#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004472.hs38DH/SS6004472.hs38DH.cram --algo AlignmentStat SGDP/SS6004472.hs38DH/QCmetrics/SS6004472.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	709795835	709795835	1.000000	0	700133366	0.986387	69478434153	640462626	63765167341	61959283291	0.000000	0.003671	0.002917	0.000211	100.000000	698451872	0.997598	0	0.500362	0.031763	0.000001	
SECOND_OF_PAIR	709795835	709795835	1.000000	0	698545395	0.984150	68976264250	638390274	63307303958	59974579041	0.000000	0.005356	0.004603	0.000212	100.000000	698451872	0.999866	0	0.499685	0.032852	0.000064	
PAIR	1419591670	1419591670	1.000000	0	1398678761	0.985268	138454698403	1278852900	127072471299	121933862332	0.000000	0.004510	0.003757	0.000211	100.000000	1396903744	0.998731	0	0.500024	0.032307	0.000032