#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004472.hs38DH/SS6004472.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004472.hs38DH/QCmetrics/SS6004472.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 20.87 7.302 21 4 0 0.041206 0.00095427 0.033721 0.00017331 0.00011992 0.076175 0.99728 0.98862 0.96044 0.84668 0.57416 0.26692 0.087361 0.0084591 0.0026991 0.0013404 0.00078785 0.00053716 0.00040492 0.00031708 0.99122 21 coverage high_quality_coverage_count 0 413892 1 302464 2 298673 3 329596 4 386672 5 478713 6 598031 7 777496 8 1034975 9 1396401 10 1880474 11 2519077 12 3315415 13 4264848 14 5324925 15 6445591 16 7514726 17 8482202 18 9245596 19 9766994 20 9996497 21 9924146 22 9591187 23 9003062 24 8219606 25 7318962 26 6365683 27 5413705 28 4521044 29 3694875 30 2961885 31 2336801 32 1814907 33 1391965 34 1057690 35 797629 36 597616 37 449262 38 338656 39 255656 40 195124 41 150249 42 118487 43 94093 44 77721 45 64365 46 54255 47 46471 48 40260 49 35143 50 31296 51 27931 52 25231 53 22638 54 20670 55 18753 56 17188 57 15905 58 14271 59 12806 60 11790 61 10993 62 10089 63 9011 64 8551 65 7794 66 7316 67 6739 68 6197 69 5566 70 5145 71 4748 72 4359 73 4196 74 4051 75 3678 76 3373 77 2987 78 2853 79 2744 80 2346 81 2366 82 2241 83 2148 84 2053 85 1941 86 1884 87 1792 88 1720 89 1624 90 1555 91 1429 92 1348 93 1359 94 1411 95 1333 96 1331 97 1197 98 1196 99 1203 100 1150 101 1149 102 1077 103 1081 104 1049 105 934 106 913 107 878 108 859 109 795 110 772 111 787 112 736 113 730 114 698 115 688 116 663 117 607 118 681 119 618 120 578 121 618 122 572 123 552 124 540 125 532 126 518 127 503 128 484 129 481 130 401 131 406 132 394 133 400 134 361 135 367 136 342 137 376 138 334 139 308 140 314 141 385 142 329 143 395 144 357 145 328 146 364 147 324 148 278 149 268 150 278 151 282 152 310 153 262 154 306 155 254 156 293 157 242 158 253 159 227 160 256 161 258 162 231 163 223 164 193 165 228 166 185 167 212 168 183 169 159 170 185 171 145 172 165 173 159 174 182 175 173 176 175 177 150 178 159 179 149 180 145 181 148 182 145 183 144 184 142 185 122 186 134 187 121 188 123 189 133 190 133 191 109 192 132 193 115 194 103 195 130 196 116 197 105 198 106 199 108 200 112 201 130 202 110 203 99 204 111 205 121 206 103 207 128 208 106 209 119 210 102 211 96 212 93 213 106 214 104 215 98 216 111 217 92 218 97 219 110 220 110 221 75 222 94 223 89 224 85 225 83 226 90 227 87 228 103 229 95 230 94 231 90 232 74 233 102 234 88 235 92 236 86 237 80 238 84 239 68 240 65 241 88 242 68 243 75 244 67 245 64 246 80 247 80 248 72 249 46 250 5345