#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004472.hs38DH/SS6004472.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004472.hs38DH/QCmetrics/SS6004472.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 26.899 30.134 22 5 0 0.20092 0.00083166 0.022316 0.00017196 0.36279 0.58703 0.99797 0.99188 0.96795 0.86633 0.62324 0.33953 0.16013 0.061296 0.046476 0.040256 0.035581 0.03117 0.027194 0.023994 0.99327 22 coverage high_quality_coverage_count 0 47981 1 32617 2 31746 3 36666 4 43032 5 55293 6 74697 7 102441 8 141204 9 191826 10 262328 11 353251 12 461483 13 589530 14 735303 15 888864 16 1033514 17 1170333 18 1285172 19 1367989 20 1411107 21 1409461 22 1373213 23 1304182 24 1207866 25 1093926 26 969835 27 844260 28 722868 29 609447 30 505983 31 414734 32 336469 33 270615 34 217011 35 173914 36 140246 37 111637 38 91098 39 74392 40 62114 41 52037 42 44405 43 38247 44 33016 45 29076 46 25913 47 23806 48 21736 49 19939 50 18438 51 17206 52 15808 53 15133 54 14375 55 14068 56 13753 57 13087 58 13024 59 12140 60 11888 61 11705 62 11386 63 11312 64 10942 65 10870 66 10700 67 10743 68 10397 69 10547 70 10526 71 10387 72 10579 73 10467 74 10607 75 10460 76 10324 77 10463 78 10284 79 10158 80 10215 81 10005 82 9828 83 9609 84 9364 85 9461 86 9205 87 8914 88 8843 89 8541 90 8349 91 8231 92 8109 93 7851 94 7634 95 7542 96 7235 97 6791 98 7011 99 6875 100 6515 101 6414 102 6246 103 5880 104 5739 105 5685 106 5552 107 5288 108 5041 109 5011 110 4688 111 4635 112 4681 113 4354 114 4175 115 4054 116 4071 117 3959 118 3833 119 3825 120 3744 121 3880 122 3648 123 3565 124 3447 125 3342 126 3321 127 3239 128 3136 129 3036 130 2925 131 2799 132 2699 133 2734 134 2658 135 2534 136 2660 137 2517 138 2483 139 2415 140 2365 141 2290 142 2258 143 2146 144 2096 145 2047 146 2058 147 1894 148 1900 149 1900 150 1863 151 1682 152 1650 153 1749 154 1730 155 1655 156 1646 157 1576 158 1523 159 1465 160 1501 161 1422 162 1501 163 1390 164 1407 165 1446 166 1354 167 1325 168 1255 169 1316 170 1286 171 1259 172 1189 173 1150 174 1130 175 1148 176 1097 177 1047 178 1081 179 1019 180 1093 181 1046 182 1049 183 1103 184 1077 185 1076 186 1064 187 1058 188 1031 189 1027 190 1008 191 979 192 1066 193 937 194 1007 195 950 196 954 197 949 198 924 199 992 200 1004 201 1013 202 1009 203 987 204 934 205 937 206 909 207 974 208 903 209 907 210 920 211 917 212 922 213 962 214 889 215 912 216 892 217 863 218 906 219 892 220 885 221 923 222 808 223 832 224 896 225 818 226 808 227 855 228 865 229 813 230 829 231 795 232 900 233 827 234 809 235 861 236 855 237 799 238 798 239 794 240 777 241 755 242 756 243 685 244 731 245 710 246 740 247 684 248 700 249 678 250 280870