#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004473.hs38DH/SS6004473.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004473.hs38DH/QCmetrics/SS6004473.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 37.811 13.712 37 6 0 0.049691 0.0011745 0.040018 0.0038121 0.022548 0.11724 0.99799 0.99417 0.98943 0.98147 0.96293 0.91427 0.80331 0.40252 0.10217 0.021178 0.0093667 0.006595 0.0050845 0.0040973 0.99592 24 coverage high_quality_coverage_count 0 5533829 1 3142095 2 2613741 3 2395181 4 2341668 5 2356746 6 2426200 7 2541907 8 2716192 9 2968507 10 3288942 11 3706471 12 4231877 13 4904389 14 5743522 15 6804198 16 8135371 17 9779323 18 11851024 19 14381726 20 17524199 21 21352714 22 25945264 23 31345149 24 37561671 25 44594908 26 52333677 27 60624082 28 69281063 29 78058938 30 86691101 31 94867471 32 102300258 33 108772689 34 113976527 35 117740941 36 119957877 37 120562856 38 119515992 39 116978591 40 113062822 41 107912728 42 101753825 43 94796814 44 87293488 45 79503582 46 71615640 47 63844388 48 56327753 49 49239617 50 42609398 51 36529816 52 31083735 53 26213157 54 21956494 55 18253644 56 15089260 57 12405142 58 10152415 59 8275859 60 6741453 61 5483125 62 4476295 63 3655155 64 3006588 65 2488379 66 2079081 67 1750036 68 1491521 69 1285937 70 1124632 71 994877 72 895234 73 812954 74 747945 75 692149 76 644222 77 602037 78 567065 79 535511 80 508669 81 483806 82 459789 83 438109 84 419347 85 401498 86 383569 87 367362 88 351963 89 336688 90 323055 91 310580 92 296971 93 285495 94 274115 95 263488 96 253461 97 244593 98 234822 99 226241 100 218467 101 210520 102 203275 103 197054 104 189421 105 182820 106 177042 107 171601 108 166289 109 160174 110 155623 111 149978 112 145072 113 140698 114 136601 115 132482 116 129063 117 124885 118 120964 119 117878 120 114519 121 111647 122 109797 123 106084 124 103950 125 101585 126 99627 127 96873 128 94453 129 92422 130 90934 131 88264 132 86042 133 85050 134 82215 135 80719 136 79045 137 77421 138 76223 139 74373 140 72840 141 71019 142 69846 143 67963 144 65870 145 64784 146 63890 147 62740 148 61177 149 59333 150 58398 151 57653 152 56487 153 54807 154 53654 155 52490 156 51965 157 50583 158 49447 159 48527 160 48274 161 47230 162 45887 163 45481 164 44760 165 44071 166 43124 167 42310 168 41520 169 41055 170 40120 171 39231 172 38748 173 37690 174 37266 175 36629 176 36290 177 35897 178 35152 179 34755 180 34424 181 33531 182 33185 183 32420 184 32205 185 31750 186 30924 187 30481 188 30134 189 29441 190 29174 191 29216 192 28412 193 28172 194 28019 195 27591 196 27108 197 26429 198 26123 199 25985 200 25395 201 25230 202 24921 203 24582 204 24192 205 23905 206 23560 207 22837 208 22539 209 22328 210 22111 211 21987 212 21462 213 21172 214 20958 215 20599 216 20182 217 20375 218 20107 219 19615 220 19397 221 19426 222 19420 223 18862 224 18732 225 18434 226 18067 227 18007 228 17917 229 17491 230 17238 231 17172 232 17023 233 16876 234 16607 235 16491 236 16475 237 16025 238 15803 239 15935 240 15541 241 15440 242 15337 243 15198 244 14769 245 14498 246 14135 247 14153 248 14140 249 13888 250 2627722