#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004473.hs38DH/SS6004473.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004473.hs38DH/QCmetrics/SS6004473.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.776 6.8194 19 4 0 0.030549 0.0013096 0.037085 0.0038102 0.00011584 0.072869 0.99656 0.98614 0.94742 0.76991 0.42893 0.15224 0.039508 0.0052263 0.0022309 0.0011965 0.00075721 0.00053194 0.00040646 0.00031867 0.98883 20 coverage high_quality_coverage_count 0 523151 1 377465 2 369878 3 392693 4 445165 5 548702 6 729574 7 1022300 8 1470188 9 2119029 10 2991079 11 4072924 12 5310184 13 6652883 14 7974141 15 9181232 16 10135173 17 10744155 18 10983903 19 10824564 20 10317290 21 9520870 22 8532753 23 7431643 24 6285675 25 5181499 26 4169211 27 3302690 28 2554769 29 1939867 30 1450012 31 1069132 32 781856 33 570377 34 414839 35 304534 36 224695 37 167933 38 129556 39 101759 40 82082 41 67778 42 57402 43 49545 44 43361 45 37999 46 33976 47 30733 48 27724 49 25049 50 22595 51 20805 52 19258 53 17605 54 15901 55 14729 56 13316 57 12159 58 10902 59 10071 60 9052 61 8449 62 7713 63 7087 64 6722 65 6239 66 5931 67 5561 68 5183 69 4888 70 4624 71 4204 72 3935 73 3715 74 3454 75 3227 76 3006 77 2925 78 2644 79 2533 80 2328 81 2242 82 2043 83 2093 84 2006 85 1805 86 1672 87 1670 88 1611 89 1618 90 1610 91 1457 92 1329 93 1355 94 1315 95 1321 96 1313 97 1225 98 1254 99 1175 100 1181 101 1077 102 982 103 933 104 835 105 829 106 741 107 761 108 713 109 746 110 737 111 693 112 685 113 670 114 706 115 674 116 676 117 673 118 586 119 601 120 633 121 534 122 554 123 519 124 535 125 558 126 507 127 479 128 473 129 500 130 486 131 491 132 483 133 439 134 421 135 399 136 458 137 409 138 442 139 396 140 425 141 383 142 346 143 361 144 326 145 313 146 311 147 307 148 291 149 308 150 308 151 284 152 329 153 293 154 257 155 285 156 259 157 259 158 242 159 263 160 243 161 269 162 245 163 269 164 261 165 239 166 268 167 231 168 217 169 216 170 205 171 160 172 182 173 196 174 181 175 202 176 203 177 184 178 196 179 206 180 211 181 184 182 200 183 196 184 173 185 187 186 174 187 179 188 193 189 178 190 160 191 173 192 169 193 164 194 164 195 163 196 139 197 142 198 150 199 155 200 148 201 130 202 133 203 155 204 125 205 126 206 142 207 109 208 133 209 130 210 122 211 154 212 113 213 124 214 122 215 105 216 95 217 89 218 97 219 84 220 106 221 80 222 69 223 74 224 90 225 66 226 94 227 87 228 70 229 91 230 66 231 65 232 82 233 64 234 63 235 54 236 70 237 71 238 52 239 63 240 59 241 67 242 57 243 73 244 61 245 78 246 58 247 64 248 47 249 58 250 4747