#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004473.hs38DH/SS6004473.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004473.hs38DH/QCmetrics/SS6004473.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 24.664 29.265 20 4 0 0.19402 0.00099272 0.024383 0.001549 0.38917 0.61011 0.99812 0.99214 0.95761 0.80152 0.50371 0.24851 0.1256 0.057154 0.037507 0.030292 0.026552 0.023779 0.021553 0.019879 0.99272 21 coverage high_quality_coverage_count 0 44360 1 24913 2 30368 3 37944 4 48162 5 67382 6 98042 7 143384 8 209745 9 297642 10 415394 11 561552 12 729267 13 905581 14 1077672 15 1239517 16 1368632 17 1452467 18 1494921 19 1483608 20 1429534 21 1340364 22 1223632 23 1090702 24 947666 25 809772 26 680357 27 566746 28 465795 29 382449 30 314293 31 257091 32 212616 33 178298 34 151114 35 129276 36 112318 37 97699 38 86888 39 78268 40 70721 41 63017 42 56801 43 51428 44 46897 45 42583 46 38710 47 34352 48 31632 49 28248 50 25076 51 22752 52 20503 53 18662 54 16787 55 15647 56 14226 57 13316 58 12192 59 11381 60 10502 61 10095 62 9770 63 9288 64 8949 65 8745 66 8068 67 7892 68 7639 69 7447 70 7358 71 7252 72 6981 73 6607 74 6416 75 6359 76 6244 77 6173 78 6132 79 6019 80 5812 81 5782 82 5632 83 5523 84 5259 85 5119 86 5056 87 4833 88 4842 89 4758 90 4685 91 4460 92 4407 93 4174 94 3914 95 3861 96 3640 97 3502 98 3459 99 3482 100 3377 101 3298 102 3092 103 3020 104 3002 105 2829 106 2699 107 2768 108 2663 109 2610 110 2473 111 2504 112 2423 113 2356 114 2221 115 2264 116 2227 117 2207 118 2078 119 2141 120 2065 121 1953 122 1877 123 1999 124 1890 125 1740 126 1747 127 1748 128 1709 129 1726 130 1714 131 1727 132 1634 133 1630 134 1569 135 1644 136 1643 137 1628 138 1494 139 1505 140 1480 141 1369 142 1458 143 1286 144 1358 145 1354 146 1326 147 1382 148 1303 149 1297 150 1325 151 1326 152 1257 153 1289 154 1234 155 1225 156 1251 157 1219 158 1139 159 1176 160 1131 161 1136 162 1099 163 1139 164 1176 165 1148 166 1135 167 1133 168 1044 169 1102 170 1039 171 1080 172 988 173 1056 174 1034 175 1075 176 1017 177 1073 178 1060 179 1043 180 1023 181 1011 182 934 183 1020 184 984 185 987 186 1041 187 1033 188 911 189 937 190 971 191 981 192 957 193 952 194 1070 195 932 196 929 197 980 198 921 199 950 200 957 201 957 202 901 203 903 204 852 205 939 206 886 207 854 208 914 209 837 210 861 211 870 212 808 213 858 214 801 215 819 216 757 217 784 218 767 219 787 220 760 221 817 222 728 223 779 224 797 225 765 226 750 227 764 228 754 229 739 230 769 231 758 232 771 233 758 234 754 235 723 236 702 237 777 238 734 239 779 240 719 241 740 242 750 243 771 244 733 245 767 246 726 247 734 248 734 249 650 250 276063