#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004474.hs38DH/SS6004474.hs38DH.cram --algo AlignmentStat SGDP/SS6004474.hs38DH/QCmetrics/SS6004474.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	625897928	625897928	1.000000	0	617668239	0.986851	61272899059	570664821	56806040973	55385606839	0.000000	0.003686	0.002896	0.000213	100.000000	616341137	0.997851	0	0.499933	0.030032	0.000003	
SECOND_OF_PAIR	625897928	625897928	1.000000	0	616469210	0.984936	60942723857	569026668	56486390638	54088314604	0.000000	0.004887	0.004105	0.000214	100.000000	616341137	0.999792	0	0.500107	0.030778	0.000342	
PAIR	1251795856	1251795856	1.000000	0	1234137449	0.985894	122215622916	1139691489	113292431611	109473921443	0.000000	0.004285	0.003499	0.000214	100.000000	1232682274	0.998821	0	0.500020	0.030405	0.000172