#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004474.hs38DH/SS6004474.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004474.hs38DH/QCmetrics/SS6004474.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 37.548 12.846 37 6 0 0.056016 0.00080697 0.030908 0.0030016 0.016082 0.10682 0.99801 0.99452 0.98998 0.98226 0.96429 0.91612 0.80308 0.39316 0.096514 0.018865 0.0078099 0.0053782 0.0041012 0.0032713 0.99615 24 coverage high_quality_coverage_count 0 5457787 1 2840588 2 2352169 3 2217012 4 2190777 5 2219674 6 2307854 7 2450172 8 2625264 9 2860241 10 3181667 11 3596251 12 4102988 13 4761598 14 5582106 15 6603622 16 7877045 17 9471020 18 11454714 19 13969274 20 17110613 21 20956869 22 25597686 23 31133724 24 37580653 25 44888908 26 52998780 27 61735230 28 70852775 29 80160035 30 89232419 31 97760327 32 105423378 33 111962298 34 117090902 35 120613941 36 122474212 37 122635369 38 121159854 39 118079687 40 113582033 41 107860527 42 101231114 43 93872485 44 86046385 45 78065649 46 70041003 47 62190339 48 54677414 49 47611339 50 41101706 51 35155805 52 29840692 53 25122988 54 21011721 55 17438705 56 14384783 57 11804966 58 9653137 59 7861393 60 6386581 61 5188916 62 4212129 63 3432240 64 2805789 65 2311657 66 1917055 67 1603464 68 1357681 69 1164879 70 1013816 71 892403 72 793347 73 713137 74 651525 75 599345 76 556840 77 518735 78 485545 79 457495 80 432285 81 411297 82 390832 83 371923 84 353989 85 336866 86 323315 87 308786 88 296330 89 283672 90 271340 91 260853 92 250845 93 239789 94 230136 95 221104 96 213321 97 205323 98 197183 99 190450 100 184175 101 177678 102 170930 103 164962 104 158486 105 153877 106 148582 107 143320 108 138205 109 133692 110 129719 111 125065 112 122603 113 118602 114 114414 115 110882 116 108207 117 104443 118 102277 119 98317 120 96570 121 92845 122 91330 123 88363 124 86267 125 84218 126 81782 127 79529 128 77391 129 75225 130 73555 131 71148 132 69281 133 67726 134 65894 135 64262 136 63044 137 61615 138 60285 139 58636 140 56944 141 55822 142 54705 143 53668 144 52423 145 50816 146 50462 147 48969 148 47814 149 46445 150 46066 151 45274 152 44463 153 43689 154 43061 155 42355 156 41564 157 40754 158 39815 159 39511 160 38790 161 38042 162 37447 163 37172 164 36268 165 35736 166 35128 167 34638 168 34341 169 33737 170 33110 171 32495 172 31837 173 31547 174 31177 175 30739 176 29916 177 29359 178 28957 179 28757 180 28335 181 27918 182 27378 183 26939 184 26487 185 26125 186 25739 187 25837 188 24818 189 24458 190 24395 191 24122 192 23611 193 23280 194 22912 195 22686 196 22294 197 21651 198 22005 199 21612 200 20914 201 21046 202 20440 203 20250 204 20091 205 19751 206 19149 207 19053 208 18795 209 18341 210 18153 211 18312 212 17652 213 17479 214 17263 215 16930 216 16868 217 16882 218 16480 219 16048 220 15897 221 15738 222 15502 223 15271 224 14950 225 14976 226 14753 227 14255 228 14483 229 14264 230 13898 231 13614 232 13428 233 13446 234 13158 235 12922 236 12681 237 12601 238 12634 239 12541 240 12270 241 12144 242 11921 243 11682 244 11578 245 11384 246 11245 247 11179 248 10896 249 10807 250 1899667