#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004474.hs38DH/SS6004474.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004474.hs38DH/QCmetrics/SS6004474.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 22.223 28.935 18 4 0 0.17229 0.00083165 0.018998 0.0012604 0.37428 0.56766 0.9982 0.98263 0.89527 0.68361 0.37786 0.15985 0.076013 0.046608 0.040121 0.035432 0.030798 0.026475 0.023099 0.020723 0.98543 18 coverage high_quality_coverage_count 0 42479 1 44699 2 66779 3 101403 4 155187 5 229288 6 311111 7 405831 8 504534 9 614100 10 731303 11 857007 12 997850 13 1140108 14 1276656 15 1380005 16 1459489 17 1494548 18 1479181 19 1413671 20 1309130 21 1179993 22 1037743 23 884873 24 741188 25 604337 26 482358 27 379423 28 292803 29 222599 30 169737 31 128795 32 97365 33 74839 34 58271 35 46274 36 37622 37 31783 38 26891 39 23448 40 20243 41 18477 42 17242 43 16064 44 15374 45 14261 46 13500 47 12951 48 12853 49 12365 50 11623 51 11249 52 11198 53 10989 54 10669 55 10845 56 10942 57 11182 58 11185 59 10948 60 11125 61 11185 62 10953 63 10953 64 11049 65 10946 66 11004 67 10772 68 10733 69 10825 70 10825 71 10934 72 10737 73 10630 74 10484 75 10364 76 9907 77 9727 78 9242 79 9325 80 9154 81 9207 82 8892 83 8444 84 8203 85 7793 86 7499 87 7068 88 7008 89 6522 90 6240 91 6120 92 6026 93 5927 94 5603 95 5559 96 5327 97 5282 98 5072 99 5012 100 4874 101 4676 102 4392 103 4459 104 4296 105 4397 106 4298 107 4233 108 4017 109 4073 110 3871 111 3871 112 3810 113 3523 114 3555 115 3476 116 3434 117 3439 118 3166 119 3167 120 3187 121 3120 122 2934 123 2939 124 2811 125 2739 126 2740 127 2734 128 2658 129 2416 130 2510 131 2448 132 2391 133 2298 134 2218 135 2217 136 2070 137 2135 138 2050 139 2043 140 1910 141 1914 142 1833 143 1704 144 1791 145 1656 146 1614 147 1581 148 1576 149 1534 150 1573 151 1571 152 1593 153 1546 154 1485 155 1518 156 1391 157 1495 158 1479 159 1399 160 1438 161 1381 162 1366 163 1291 164 1335 165 1261 166 1265 167 1257 168 1181 169 1284 170 1229 171 1162 172 1173 173 1144 174 1205 175 1194 176 1160 177 1173 178 1195 179 1160 180 1063 181 1080 182 1054 183 1069 184 975 185 998 186 1029 187 952 188 1006 189 943 190 952 191 955 192 941 193 950 194 928 195 921 196 913 197 899 198 888 199 906 200 889 201 882 202 859 203 845 204 878 205 860 206 880 207 824 208 876 209 782 210 783 211 862 212 850 213 766 214 804 215 784 216 794 217 753 218 731 219 765 220 782 221 734 222 733 223 739 224 736 225 711 226 759 227 701 228 727 229 696 230 705 231 664 232 712 233 711 234 696 235 672 236 690 237 683 238 706 239 659 240 656 241 664 242 682 243 610 244 664 245 655 246 646 247 661 248 639 249 641 250 246491