#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004475.hs38DH/SS6004475.hs38DH.cram --algo AlignmentStat SGDP/SS6004475.hs38DH/QCmetrics/SS6004475.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	663488003	663488003	1.000000	0	655030544	0.987253	64904749779	598970618	59587804279	57907692999	0.000000	0.004195	0.003304	0.000249	100.000000	653445823	0.997581	0	0.500137	0.042897	0.000003	
SECOND_OF_PAIR	663488003	663488003	1.000000	0	653591685	0.985084	64370293970	596651044	59085547792	56176719450	0.000000	0.005721	0.004819	0.000252	100.000000	653445823	0.999777	0	0.499957	0.044857	0.000238	
PAIR	1326976006	1326976006	1.000000	0	1308622229	0.986169	129275043749	1195621662	118673352071	114084412449	0.000000	0.004955	0.004058	0.000251	100.000000	1306891646	0.998678	0	0.500047	0.043876	0.000120