#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004475.hs38DH/SS6004475.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004475.hs38DH/QCmetrics/SS6004475.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 38.848 13.915 38 6 0 0.069992 0.00089077 0.034765 0.0024478 0.020473 0.12857 0.99806 0.99471 0.99058 0.98389 0.96846 0.92657 0.827 0.4437 0.12581 0.026736 0.010344 0.0069299 0.0053083 0.0042861 0.99626 24 coverage high_quality_coverage_count 0 5337051 1 2831985 2 2263112 3 2085560 4 2028946 5 2052930 6 2120838 7 2220332 8 2371132 9 2565528 10 2816286 11 3144912 12 3560022 13 4093793 14 4775129 15 5629589 16 6726211 17 8114371 18 9871791 19 12058790 20 14792878 21 18162092 22 22240721 23 27110093 24 32795375 25 39265820 26 46467443 27 54286065 28 62550208 29 71046037 30 79556863 31 87782488 32 95448360 33 102273995 34 108054119 35 112608188 36 115805862 37 117537742 38 117745540 39 116489168 40 113838803 41 109939024 42 104947310 43 99016478 44 92442009 45 85366049 46 78002030 47 70585492 48 63253373 49 56177092 50 49442732 51 43119483 52 37282502 53 31984573 54 27244854 55 23029939 56 19352975 57 16174513 58 13453430 59 11155386 60 9207150 61 7584189 62 6241173 63 5136014 64 4235772 65 3500232 66 2911533 67 2435505 68 2050805 69 1741529 70 1497087 71 1302126 72 1141144 73 1015031 74 912085 75 827018 76 754562 77 693520 78 642157 79 598300 80 559805 81 528335 82 501228 83 473237 84 449789 85 427843 86 405313 87 387909 88 369690 89 352733 90 338705 91 323069 92 308687 93 295823 94 284373 95 272927 96 261463 97 250729 98 240812 99 232531 100 223593 101 214355 102 208062 103 201036 104 193883 105 188194 106 182543 107 176349 108 169416 109 164189 110 159914 111 155307 112 150644 113 145930 114 141215 115 137982 116 133427 117 130040 118 127010 119 123553 120 120046 121 116990 122 113996 123 111475 124 109635 125 106691 126 104417 127 102489 128 99949 129 97410 130 95319 131 92704 132 90985 133 89123 134 87851 135 84875 136 83268 137 82010 138 79932 139 77629 140 76836 141 75083 142 73540 143 72268 144 70256 145 69509 146 67928 147 66668 148 64632 149 63766 150 62540 151 61018 152 60322 153 59346 154 58332 155 57345 156 56317 157 55342 158 53879 159 52810 160 51955 161 50866 162 49932 163 48948 164 48074 165 46961 166 46506 167 45379 168 44669 169 43942 170 42974 171 42474 172 41271 173 40960 174 40592 175 39727 176 38944 177 38007 178 38097 179 37048 180 36400 181 36142 182 35506 183 35078 184 34550 185 34163 186 33468 187 33058 188 32721 189 32292 190 31550 191 31457 192 30984 193 30384 194 29616 195 29628 196 29051 197 28515 198 28311 199 27772 200 27333 201 27023 202 26431 203 26196 204 26041 205 25811 206 25432 207 25237 208 24978 209 24329 210 24058 211 23601 212 23414 213 23321 214 22902 215 22569 216 22432 217 21980 218 21780 219 21546 220 21244 221 20946 222 21088 223 20602 224 20470 225 19846 226 19903 227 19493 228 19018 229 18778 230 18916 231 18417 232 18431 233 18106 234 17957 235 17407 236 17677 237 17291 238 17271 239 16963 240 16581 241 16586 242 16256 243 16229 244 16125 245 15773 246 15520 247 15255 248 15568 249 15285 250 2683478