#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004475.hs38DH/SS6004475.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004475.hs38DH/QCmetrics/SS6004475.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 19.084 6.9826 19 4 0 0.054173 0.00098243 0.031958 0.0024918 0.0001307 0.089736 0.99693 0.987 0.95086 0.78109 0.44746 0.16779 0.046827 0.0061018 0.0023887 0.001232 0.00077268 0.00054776 0.00041869 0.0003301 0.98967 20 coverage high_quality_coverage_count 0 466687 1 346554 2 354434 3 381349 4 428492 5 516724 6 679997 7 947995 8 1365302 9 1987930 10 2822485 11 3861887 12 5067711 13 6380780 14 7691697 15 8884464 16 9844812 17 10509236 18 10800192 19 10711056 20 10274010 21 9559066 22 8628042 23 7582204 24 6497778 25 5436916 26 4446838 27 3559099 28 2795170 29 2162343 30 1650717 31 1241438 32 928532 33 687043 34 510439 35 379405 36 284231 37 215942 38 166523 39 130649 40 105040 41 85428 42 71741 43 61217 44 52646 45 46355 46 41713 47 37241 48 33666 49 29764 50 26937 51 24004 52 21812 53 19317 54 17893 55 15903 56 14463 57 13089 58 11901 59 10630 60 9791 61 8810 62 8245 63 7605 64 7097 65 6539 66 6131 67 5571 68 5158 69 4930 70 4397 71 4091 72 3931 73 3629 74 3437 75 3230 76 3037 77 2958 78 2818 79 2685 80 2462 81 2377 82 2164 83 2032 84 1966 85 1895 86 1812 87 1716 88 1627 89 1582 90 1551 91 1502 92 1481 93 1443 94 1374 95 1349 96 1246 97 1254 98 1130 99 1146 100 1096 101 1093 102 1055 103 1012 104 974 105 953 106 921 107 965 108 843 109 844 110 810 111 824 112 692 113 684 114 664 115 659 116 599 117 633 118 588 119 633 120 559 121 556 122 559 123 550 124 577 125 533 126 491 127 468 128 451 129 408 130 428 131 416 132 414 133 419 134 413 135 379 136 366 137 400 138 384 139 359 140 329 141 333 142 316 143 317 144 296 145 282 146 305 147 268 148 256 149 263 150 268 151 263 152 257 153 251 154 241 155 222 156 225 157 207 158 215 159 203 160 191 161 202 162 198 163 176 164 190 165 188 166 194 167 201 168 179 169 166 170 153 171 153 172 169 173 164 174 184 175 174 176 168 177 177 178 170 179 176 180 166 181 160 182 167 183 148 184 179 185 167 186 182 187 171 188 164 189 177 190 151 191 166 192 151 193 162 194 175 195 177 196 156 197 154 198 182 199 171 200 152 201 151 202 175 203 139 204 136 205 139 206 136 207 133 208 126 209 132 210 117 211 123 212 132 213 115 214 111 215 124 216 133 217 109 218 113 219 110 220 135 221 128 222 125 223 134 224 120 225 119 226 108 227 131 228 114 229 120 230 116 231 133 232 143 233 139 234 176 235 137 236 142 237 147 238 146 239 122 240 134 241 153 242 113 243 113 244 106 245 125 246 103 247 105 248 92 249 88 250 5952