#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004475.hs38DH/SS6004475.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004475.hs38DH/QCmetrics/SS6004475.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 24.294 29.317 19 4 0 0.15027 0.00086908 0.022815 0.0011781 0.37636 0.55149 0.99691 0.9913 0.95725 0.79333 0.4774 0.21516 0.098636 0.050681 0.042312 0.037689 0.033562 0.029261 0.02505 0.021594 0.99165 21 coverage high_quality_coverage_count 0 72973 1 26034 2 27957 3 33940 4 44785 5 64286 6 93476 7 139710 8 206216 9 301143 10 424302 11 581519 12 760817 13 956883 14 1150849 15 1319151 16 1457578 17 1546420 18 1582261 19 1562167 20 1494276 21 1391910 22 1256359 23 1105006 24 950798 25 798900 26 659651 27 534573 28 425289 29 335721 30 263982 31 206978 32 161878 33 126363 34 99770 35 78542 36 63754 37 52476 38 43085 39 36658 40 31107 41 27004 42 23990 43 20864 44 19137 45 17413 46 16107 47 15032 48 14013 49 13141 50 12705 51 11913 52 11562 53 11065 54 10884 55 10707 56 10486 57 10056 58 10060 59 9841 60 9666 61 9928 62 9735 63 9731 64 9688 65 9583 66 9681 67 9884 68 9827 69 9817 70 10103 71 9844 72 10281 73 10094 74 10185 75 10246 76 10366 77 10299 78 10073 79 10179 80 10205 81 10278 82 10239 83 10309 84 10110 85 10042 86 10006 87 9797 88 9372 89 9169 90 9136 91 8959 92 8707 93 8439 94 8313 95 8238 96 7974 97 7526 98 7215 99 7177 100 6901 101 6637 102 6520 103 6093 104 5979 105 5755 106 5519 107 5156 108 4928 109 4865 110 4729 111 4504 112 4274 113 4052 114 3808 115 3730 116 3580 117 3297 118 3109 119 3087 120 2967 121 2833 122 2640 123 2624 124 2487 125 2396 126 2296 127 2221 128 2207 129 2197 130 2115 131 2102 132 1949 133 1935 134 1844 135 1855 136 1887 137 1808 138 1785 139 1692 140 1752 141 1587 142 1618 143 1531 144 1592 145 1495 146 1512 147 1412 148 1414 149 1418 150 1431 151 1390 152 1363 153 1363 154 1336 155 1278 156 1296 157 1324 158 1307 159 1224 160 1147 161 1188 162 1152 163 1140 164 1097 165 989 166 1023 167 1071 168 1103 169 1015 170 1001 171 977 172 1011 173 1028 174 996 175 956 176 1004 177 976 178 971 179 907 180 1027 181 977 182 964 183 950 184 963 185 1009 186 976 187 896 188 899 189 903 190 890 191 869 192 877 193 909 194 827 195 866 196 844 197 794 198 883 199 805 200 841 201 848 202 868 203 777 204 840 205 781 206 831 207 822 208 862 209 829 210 800 211 797 212 759 213 761 214 788 215 747 216 753 217 752 218 779 219 782 220 824 221 751 222 793 223 800 224 848 225 827 226 777 227 786 228 839 229 774 230 803 231 754 232 736 233 740 234 689 235 716 236 728 237 662 238 748 239 681 240 723 241 687 242 713 243 699 244 725 245 724 246 751 247 689 248 683 249 703 250 264135