#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004476.hs38DH/SS6004476.hs38DH.cram --algo AlignmentStat SGDP/SS6004476.hs38DH/QCmetrics/SS6004476.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	593743284	593743284	1.000000	0	585444276	0.986023	58008771178	534402943	53168470411	51892817711	0.000000	0.003778	0.002901	0.000229	100.000000	584012113	0.997554	0	0.500168	0.040077	0.000002	
SECOND_OF_PAIR	593743284	593743284	1.000000	0	584151648	0.983845	57571640817	532441181	52765915518	50588149971	0.000000	0.004905	0.004019	0.000232	100.000000	584012113	0.999761	0	0.499939	0.041948	0.000169	
PAIR	1187486568	1187486568	1.000000	0	1169595924	0.984934	115580411995	1066844124	105934385929	102480967682	0.000000	0.004339	0.003458	0.000231	100.000000	1168024226	0.998656	0	0.500054	0.041012	0.000085