#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004477.hs38DH/SS6004477.hs38DH.cram --algo AlignmentStat SGDP/SS6004477.hs38DH/QCmetrics/SS6004477.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	666131445	666131445	1.000000	0	658948716	0.989217	65363616009	607361622	60461024924	58702901832	0.000000	0.003771	0.003006	0.000219	100.000000	657566392	0.997902	0	0.499973	0.026306	0.000002	
SECOND_OF_PAIR	666131445	666131445	1.000000	0	657670245	0.987298	65067223238	605773658	60170936072	57129408412	0.000000	0.005166	0.004418	0.000219	100.000000	657566392	0.999842	0	0.500061	0.026466	0.000150	
PAIR	1332262890	1332262890	1.000000	0	1316618961	0.988258	130430839247	1213135280	120631960996	115832310244	0.000000	0.004467	0.003710	0.000219	100.000000	1315132784	0.998871	0	0.500017	0.026386	0.000076