#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004477.hs38DH/SS6004477.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004477.hs38DH/QCmetrics/SS6004477.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 25.482 29.642 20 4 0 0.1336 0.00092248 0.025288 0.0011093 0.35733 0.51824 0.99855 0.99338 0.96421 0.82982 0.54596 0.27046 0.12444 0.056405 0.044692 0.038296 0.03315 0.028567 0.024951 0.02234 0.99388 22 coverage high_quality_coverage_count 0 34332 1 21524 2 26081 3 33285 4 41324 5 57823 6 81771 7 120780 8 176674 9 252305 10 348433 11 471249 12 621321 13 781820 14 953715 15 1121064 16 1268126 17 1377223 18 1453026 19 1490021 20 1472045 21 1415930 22 1325041 23 1213754 24 1084882 25 947361 26 811288 27 679728 28 559950 29 453141 30 365722 31 290840 32 230680 33 182327 34 143279 35 114735 36 92426 37 74695 38 61785 39 51649 40 43952 41 37776 42 33030 43 29010 44 26298 45 24314 46 22846 47 21142 48 19896 49 18573 50 17523 51 16747 52 16148 53 15579 54 15164 55 14582 56 14163 57 14106 58 13767 59 13395 60 12918 61 12881 62 12563 63 12677 64 12324 65 12157 66 11856 67 11730 68 11256 69 11284 70 11669 71 11505 72 11186 73 11041 74 10976 75 10742 76 10358 77 10597 78 10227 79 10034 80 9663 81 9473 82 9253 83 8985 84 8678 85 8395 86 8013 87 7940 88 7690 89 7361 90 7084 91 6887 92 6766 93 6384 94 6342 95 6014 96 5968 97 5669 98 5477 99 5132 100 5155 101 4997 102 4988 103 4812 104 4645 105 4647 106 4416 107 4365 108 4128 109 4153 110 4092 111 4001 112 3927 113 3898 114 3768 115 3699 116 3569 117 3570 118 3463 119 3421 120 3312 121 3205 122 3246 123 3146 124 3020 125 2922 126 2829 127 2890 128 2813 129 2834 130 2791 131 2749 132 2589 133 2629 134 2544 135 2404 136 2425 137 2425 138 2325 139 2225 140 2158 141 2142 142 2122 143 2118 144 1988 145 1880 146 1831 147 1769 148 1778 149 1798 150 1691 151 1666 152 1639 153 1593 154 1479 155 1454 156 1448 157 1408 158 1420 159 1362 160 1334 161 1327 162 1255 163 1232 164 1194 165 1235 166 1208 167 1199 168 1225 169 1170 170 1164 171 1097 172 1207 173 1106 174 1065 175 1105 176 1065 177 1055 178 1086 179 1036 180 1026 181 1068 182 1034 183 1046 184 963 185 997 186 949 187 921 188 944 189 938 190 934 191 978 192 951 193 936 194 852 195 915 196 927 197 918 198 878 199 856 200 872 201 904 202 843 203 828 204 875 205 827 206 872 207 876 208 896 209 916 210 860 211 890 212 846 213 916 214 836 215 909 216 804 217 854 218 830 219 760 220 768 221 820 222 808 223 839 224 819 225 851 226 831 227 827 228 860 229 802 230 812 231 760 232 727 233 692 234 694 235 677 236 677 237 641 238 656 239 665 240 666 241 660 242 678 243 652 244 701 245 666 246 622 247 686 248 678 249 651 250 272757