#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004478.hs38DH/SS6004478.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004478.hs38DH/QCmetrics/SS6004478.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 41.112 14.228 41 6 0 0.043104 0.00079096 0.041663 0.0045388 0.016723 0.10682 0.99734 0.99383 0.98988 0.98394 0.97202 0.9436 0.87476 0.54524 0.18315 0.039286 0.012225 0.0076694 0.0058902 0.0047385 0.99546 23 coverage high_quality_coverage_count 0 7310933 1 3193322 2 2357118 3 2087306 4 2004984 5 2005340 6 2046720 7 2128113 8 2256088 9 2409542 10 2609574 11 2872843 12 3189581 13 3587433 14 4082123 15 4693129 16 5435363 17 6345552 18 7452281 19 8812305 20 10489631 21 12546805 22 15064343 23 18149711 24 21846411 25 26235878 26 31334147 27 37146615 28 43660416 29 50802510 30 58433062 31 66395661 32 74474224 33 82443915 34 89970089 35 96907963 36 102957714 37 107996233 38 111763856 39 114163696 40 115146408 41 114696855 42 112882102 43 109773457 44 105536111 45 100360212 46 94345765 47 87790178 48 80813122 49 73660757 50 66519877 51 59476686 52 52719704 53 46335483 54 40352141 55 34886139 56 29914174 57 25484691 58 21537279 59 18114851 60 15136213 61 12591377 62 10426530 63 8609688 64 7089323 65 5825799 66 4790652 67 3942890 68 3252213 69 2698033 70 2253699 71 1891786 72 1604054 73 1371501 74 1187505 75 1040607 76 919866 77 824291 78 743121 79 682362 80 629585 81 585917 82 546888 83 515351 84 488566 85 463047 86 442514 87 423593 88 405326 89 388546 90 371409 91 358508 92 344050 93 330253 94 318495 95 309955 96 298049 97 287682 98 277534 99 268752 100 260515 101 252357 102 243295 103 236572 104 228661 105 220826 106 214936 107 208398 108 202316 109 196002 110 190270 111 184530 112 179239 113 173525 114 168728 115 164233 116 158635 117 154172 118 149527 119 145902 120 141788 121 139300 122 135601 123 131458 124 128351 125 125420 126 122334 127 119090 128 116125 129 113417 130 110903 131 107810 132 105207 133 102008 134 99102 135 97610 136 95069 137 92922 138 90890 139 87864 140 86495 141 84372 142 82466 143 80952 144 79694 145 77541 146 75724 147 73731 148 72433 149 71109 150 69403 151 67866 152 66682 153 64909 154 64198 155 63196 156 62284 157 60689 158 59417 159 58570 160 57654 161 56813 162 55454 163 53848 164 53340 165 52113 166 51123 167 50194 168 49077 169 48479 170 47498 171 46838 172 45871 173 45081 174 44786 175 43803 176 42945 177 42415 178 41527 179 40961 180 39984 181 39322 182 38534 183 38016 184 37749 185 37057 186 36593 187 35645 188 35415 189 35020 190 34567 191 33879 192 33402 193 33401 194 32828 195 32207 196 31926 197 31068 198 30703 199 30419 200 30042 201 29324 202 29138 203 28695 204 28432 205 28085 206 26925 207 26833 208 26467 209 26213 210 25843 211 25280 212 25254 213 24809 214 24611 215 24263 216 23836 217 23841 218 23662 219 23036 220 22862 221 22626 222 21777 223 21718 224 21419 225 21412 226 20939 227 20762 228 20623 229 20225 230 19737 231 19627 232 19430 233 19394 234 18955 235 18655 236 18644 237 18427 238 17918 239 17788 240 17692 241 17304 242 17437 243 17132 244 16620 245 16530 246 16390 247 16078 248 15918 249 15570 250 2642940