#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004478.hs38DH/SS6004478.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004478.hs38DH/QCmetrics/SS6004478.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 3.0707 21.087 0 0 0 0.10412 0.0033945 0.032435 0.0019441 0.50966 0.65156 0.1467 0.070234 0.041488 0.028991 0.022954 0.019669 0.017618 0.014937 0.013199 0.012001 0.011149 0.010433 0.009828 0.0092981 0.10739 0 coverage high_quality_coverage_count 0 20168935 1 812014 2 439293 3 313627 4 242410 5 192445 6 158502 7 130607 8 106838 9 91049 10 78114 11 66705 12 57707 13 49880 14 42997 15 37311 16 32023 17 27327 18 24536 19 21489 20 19187 21 17098 22 15472 23 13414 24 12480 25 11428 26 10433 27 9788 28 8727 29 8097 30 7748 31 7250 32 6971 33 6616 34 6438 35 6224 36 5952 37 5838 38 5240 39 5089 40 4912 41 4630 42 4477 43 4279 44 4255 45 4027 46 3818 47 3714 48 3516 49 3441 50 3294 51 3097 52 2884 53 2994 54 2941 55 2845 56 2851 57 2683 58 2432 59 2317 60 2233 61 2107 62 2131 63 2090 64 2011 65 1992 66 1845 67 1947 68 1956 69 1818 70 1866 71 1846 72 1751 73 1834 74 1780 75 1688 76 1585 77 1567 78 1514 79 1495 80 1544 81 1561 82 1540 83 1434 84 1443 85 1429 86 1297 87 1388 88 1337 89 1323 90 1354 91 1306 92 1240 93 1197 94 1211 95 1252 96 1253 97 1252 98 1235 99 1224 100 1152 101 1193 102 1202 103 1239 104 1178 105 1146 106 1150 107 1133 108 1089 109 998 110 1056 111 1025 112 1108 113 1038 114 1057 115 1078 116 1097 117 1097 118 1063 119 981 120 1005 121 976 122 977 123 1015 124 1005 125 1019 126 994 127 1014 128 993 129 973 130 940 131 933 132 944 133 874 134 873 135 896 136 894 137 901 138 861 139 846 140 900 141 917 142 861 143 861 144 831 145 870 146 819 147 803 148 811 149 798 150 796 151 771 152 914 153 830 154 828 155 863 156 819 157 803 158 770 159 830 160 794 161 846 162 775 163 812 164 736 165 712 166 751 167 675 168 752 169 677 170 753 171 721 172 729 173 694 174 722 175 700 176 701 177 740 178 668 179 690 180 661 181 613 182 635 183 671 184 629 185 633 186 651 187 642 188 681 189 667 190 681 191 664 192 673 193 681 194 616 195 699 196 630 197 649 198 614 199 617 200 636 201 576 202 629 203 573 204 604 205 568 206 596 207 625 208 625 209 616 210 555 211 597 212 609 213 582 214 616 215 625 216 621 217 548 218 511 219 603 220 533 221 534 222 501 223 519 224 486 225 533 226 503 227 504 228 474 229 492 230 490 231 470 232 431 233 504 234 475 235 426 236 494 237 515 238 464 239 474 240 458 241 483 242 472 243 439 244 463 245 481 246 387 247 439 248 422 249 435 250 108194