#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004479.hs38DH/SS6004479.hs38DH.cram --algo AlignmentStat SGDP/SS6004479.hs38DH/QCmetrics/SS6004479.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	683984262	683984262	1.000000	0	674693590	0.986417	66744824073	614193948	61037099844	58979741668	0.000000	0.004421	0.003510	0.000233	100.000000	672068060	0.996109	0	0.500238	0.045650	0.000002	
SECOND_OF_PAIR	683984262	683984262	1.000000	0	672201508	0.982773	66138918420	611067082	60462593966	56885714262	0.000000	0.006899	0.006016	0.000244	100.000000	672068060	0.999801	0	0.499863	0.047203	0.000102	
PAIR	1367968524	1367968524	1.000000	0	1346895098	0.984595	132883742493	1225261030	121499693810	115865455930	0.000000	0.005654	0.004757	0.000238	100.000000	1344136120	0.997952	0	0.500051	0.046425	0.000052