#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004479.hs38DH/SS6004479.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004479.hs38DH/QCmetrics/SS6004479.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 36.93 13.981 36 6 0 0.11602 0.00124 0.038261 0.0033493 0.022469 0.18134 0.9975 0.99403 0.98971 0.98223 0.96477 0.91612 0.79504 0.34809 0.068961 0.016155 0.0099328 0.0078341 0.0064115 0.0053365 0.99566 24 coverage high_quality_coverage_count 0 6870225 1 3016835 2 2310699 3 2126028 4 2089492 5 2116981 6 2196538 7 2318322 8 2499821 9 2743936 10 3060730 11 3470138 12 3984832 13 4616719 14 5407469 15 6391016 16 7621318 17 9170025 18 11147491 19 13655869 20 16825311 21 20799232 22 25709303 23 31656451 24 38691767 25 46851507 26 56009145 27 65985330 28 76564762 29 87321863 30 97916965 31 107811055 32 116626636 33 123903306 34 129314982 35 132628765 36 133745219 37 132649280 38 129390707 39 124208844 40 117351113 41 109262919 42 100196295 43 90587979 44 80804576 45 71125984 46 61830601 47 53066050 48 45031466 49 37781152 50 31383713 51 25800902 52 21033114 53 17003751 54 13647270 55 10901601 56 8670792 57 6880157 58 5451455 59 4337561 60 3464748 61 2787998 62 2264724 63 1864002 64 1555350 65 1318415 66 1139392 67 1001948 68 893028 69 807534 70 737183 71 685727 72 642510 73 605174 74 574878 75 546618 76 522386 77 502785 78 484330 79 465586 80 449502 81 434226 82 419997 83 407534 84 393032 85 381695 86 370851 87 360323 88 351378 89 340502 90 332607 91 323489 92 313916 93 306842 94 297442 95 291115 96 282917 97 275777 98 268630 99 261446 100 254500 101 248254 102 241854 103 234966 104 229560 105 224037 106 218127 107 212324 108 207273 109 202612 110 198014 111 193478 112 189777 113 184374 114 180683 115 176240 116 172768 117 169041 118 164978 119 161434 120 157800 121 155216 122 151624 123 147985 124 145597 125 141346 126 138656 127 135601 128 132369 129 129204 130 126513 131 122929 132 120657 133 117760 134 115843 135 112947 136 110771 137 108793 138 106893 139 103985 140 102160 141 100150 142 98389 143 96623 144 94054 145 92576 146 91090 147 88604 148 87323 149 85651 150 84184 151 82257 152 81103 153 79461 154 78384 155 76546 156 74690 157 73211 158 71815 159 70968 160 69386 161 68735 162 67620 163 65960 164 65167 165 63806 166 62856 167 61606 168 60078 169 59485 170 58435 171 57026 172 56339 173 55333 174 54206 175 53489 176 52866 177 51688 178 51042 179 49652 180 48891 181 48371 182 47547 183 46595 184 46335 185 45238 186 44564 187 44167 188 43808 189 42353 190 42196 191 41679 192 40539 193 40322 194 39476 195 39447 196 38643 197 37782 198 37739 199 36826 200 36665 201 35812 202 35114 203 34758 204 34113 205 33446 206 33119 207 32523 208 32069 209 31926 210 31174 211 30806 212 30251 213 29974 214 29695 215 29144 216 28474 217 28375 218 28129 219 27661 220 27432 221 26835 222 26525 223 26029 224 25748 225 25448 226 24916 227 24253 228 24174 229 23857 230 23412 231 23421 232 22826 233 22525 234 22414 235 22071 236 21982 237 21775 238 21092 239 21162 240 21052 241 20314 242 20052 243 19674 244 19280 245 19452 246 19003 247 18588 248 18658 249 18228 250 2965741