#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004479.hs38DH/SS6004479.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004479.hs38DH/QCmetrics/SS6004479.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 36.131 10.846 36 5 0 0.098198 0.0012011 0.035378 0.0032328 0.00019729 0.13821 0.99869 0.99636 0.99242 0.98503 0.96702 0.9147 0.78355 0.32058 0.058129 0.013742 0.0078811 0.0055492 0.0039787 0.0028357 0.99741 26 coverage high_quality_coverage_count 0 199197 1 93875 2 84926 3 84712 4 90765 5 98753 6 105511 7 117975 8 130695 9 146251 10 166110 11 188557 12 216236 13 254408 14 299108 15 355757 16 429294 17 521330 18 640728 19 792783 20 987294 21 1227279 22 1529725 23 1892397 24 2321101 25 2811759 26 3361938 27 3966099 28 4593436 29 5217728 30 5815454 31 6365406 32 6842175 33 7225919 34 7479855 35 7607251 36 7600607 37 7455660 38 7198158 39 6833077 40 6389171 41 5881522 42 5328503 43 4751351 44 4177894 45 3622625 46 3109439 47 2636241 48 2203282 49 1822823 50 1492876 51 1212235 52 979847 53 781723 54 623345 55 497604 56 394755 57 314752 58 252135 59 202548 60 163938 61 136023 62 112846 63 96219 64 84046 65 73065 66 65320 67 58587 68 52668 69 48845 70 45104 71 41964 72 39233 73 36843 74 35226 75 33397 76 32426 77 31232 78 30297 79 28992 80 27925 81 26833 82 25661 83 24663 84 24474 85 23202 86 22577 87 21818 88 21152 89 20592 90 19999 91 19427 92 18921 93 18522 94 17737 95 16966 96 16347 97 15818 98 15123 99 14998 100 14316 101 14024 102 13041 103 12936 104 12391 105 12000 106 11649 107 11086 108 10456 109 10288 110 10037 111 9696 112 9208 113 8923 114 8676 115 8076 116 7864 117 7773 118 7361 119 7133 120 6843 121 6501 122 6464 123 6177 124 6027 125 5776 126 5748 127 5305 128 5348 129 5047 130 4847 131 4690 132 4522 133 4318 134 4418 135 4198 136 4069 137 3914 138 3708 139 3487 140 3512 141 3362 142 3278 143 3122 144 3009 145 2923 146 2843 147 2801 148 2639 149 2589 150 2533 151 2439 152 2350 153 2235 154 2151 155 2014 156 1942 157 2001 158 1892 159 1858 160 1751 161 1716 162 1595 163 1571 164 1607 165 1401 166 1476 167 1390 168 1268 169 1219 170 1143 171 1191 172 1072 173 1055 174 1047 175 1020 176 969 177 960 178 964 179 919 180 879 181 884 182 839 183 732 184 762 185 791 186 710 187 680 188 707 189 704 190 652 191 660 192 646 193 633 194 623 195 573 196 579 197 588 198 555 199 568 200 583 201 533 202 460 203 498 204 462 205 464 206 420 207 475 208 448 209 404 210 433 211 433 212 410 213 432 214 405 215 375 216 385 217 360 218 344 219 401 220 384 221 381 222 384 223 348 224 364 225 327 226 285 227 309 228 277 229 288 230 268 231 294 232 259 233 272 234 281 235 244 236 228 237 248 238 277 239 241 240 258 241 231 242 212 243 235 244 237 245 250 246 225 247 223 248 251 249 207 250 15409