#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004479.hs38DH/SS6004479.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004479.hs38DH/QCmetrics/SS6004479.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	3.2205	21.837	0	0	0	0.14888	0.0031955	0.030354	0.0017915	0.53177	0.71599	0.15422	0.070859	0.041732	0.029247	0.023583	0.02048	0.018437	0.015707	0.013938	0.012687	0.01175	0.010996	0.010354	0.0098308	0.11154	1	

coverage	high_quality_coverage_count	
0	19991233
1	922935
2	476072
3	326372
4	244889
5	194698
6	157759
7	131286
8	110829
9	93878
10	79487
11	68079
12	57953
13	48392
14	41191
15	35076
16	30208
17	26407
18	22721
19	19482
20	17694
21	15855
22	14405
23	13345
24	12036
25	11279
26	10052
27	9528
28	9025
29	8403
30	7976
31	7711
32	7247
33	6641
34	6510
35	6232
36	6042
37	5582
38	5473
39	5116
40	5040
41	4626
42	4399
43	4128
44	4074
45	4146
46	4197
47	3969
48	3666
49	3571
50	3286
51	3213
52	3039
53	3325
54	3139
55	2899
56	2779
57	2762
58	2598
59	2523
60	2505
61	2464
62	2346
63	2273
64	2232
65	2197
66	2169
67	1998
68	1978
69	1997
70	1862
71	2010
72	1941
73	1952
74	1822
75	1670
76	1716
77	1626
78	1611
79	1591
80	1590
81	1643
82	1600
83	1610
84	1553
85	1481
86	1496
87	1457
88	1377
89	1374
90	1253
91	1317
92	1309
93	1276
94	1230
95	1271
96	1234
97	1146
98	1149
99	1187
100	1116
101	1114
102	1181
103	1149
104	1140
105	1135
106	1104
107	1111
108	1092
109	1051
110	1033
111	1017
112	1100
113	1077
114	1052
115	1023
116	1012
117	1075
118	1071
119	1037
120	1093
121	1021
122	1073
123	1004
124	1045
125	945
126	987
127	963
128	965
129	991
130	984
131	933
132	880
133	930
134	865
135	940
136	940
137	934
138	883
139	839
140	837
141	856
142	851
143	832
144	855
145	864
146	858
147	791
148	812
149	849
150	759
151	827
152	808
153	773
154	835
155	803
156	776
157	802
158	768
159	767
160	761
161	759
162	780
163	787
164	723
165	802
166	719
167	776
168	737
169	733
170	798
171	746
172	718
173	778
174	709
175	739
176	702
177	733
178	727
179	758
180	663
181	679
182	753
183	740
184	680
185	660
186	726
187	770
188	737
189	707
190	663
191	707
192	642
193	593
194	630
195	603
196	627
197	654
198	679
199	611
200	640
201	644
202	641
203	654
204	653
205	651
206	638
207	609
208	591
209	598
210	646
211	575
212	608
213	594
214	598
215	631
216	595
217	579
218	570
219	606
220	559
221	586
222	550
223	566
224	574
225	553
226	555
227	563
228	550
229	512
230	538
231	499
232	544
233	531
234	558
235	500
236	548
237	553
238	535
239	546
240	529
241	537
242	552
243	519
244	532
245	550
246	532
247	546
248	541
249	518
250	118030