#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004480.hs38DH/SS6004480.hs38DH.cram --algo AlignmentStat SGDP/SS6004480.hs38DH/QCmetrics/SS6004480.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	725936258	725936258	1.000000	0	613614476	0.845273	60606085784	565070424	56023937371	53645603048	0.000000	0.004748	0.003989	0.000234	100.000000	608704830	0.991999	0	0.500205	0.053459	0.000003	
SECOND_OF_PAIR	725936258	725936258	1.000000	0	610212963	0.840588	59680310527	560623342	55118268566	51304568332	0.000000	0.008505	0.007748	0.000248	100.000000	608704830	0.997529	0	0.499872	0.058172	0.000174	
PAIR	1451872516	1451872516	1.000000	0	1223827439	0.842930	120286396311	1125693766	111142205937	104950171380	0.000000	0.006612	0.005853	0.000241	100.000000	1217409660	0.994756	0	0.500039	0.055810	0.000089