#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004480.hs38DH/SS6004480.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004480.hs38DH/QCmetrics/SS6004480.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.505 11.959 34 5 0 0.085404 0.0034289 0.048634 0.018793 0.016156 0.17242 0.998 0.99395 0.98868 0.97946 0.95665 0.88987 0.72926 0.24524 0.03613 0.0095556 0.0060843 0.0045697 0.0036413 0.0029987 0.99584 24 coverage high_quality_coverage_count 0 5494371 1 3277400 2 2735911 3 2573833 4 2535714 5 2571561 6 2689096 7 2836344 8 3048522 9 3347095 10 3734282 11 4245615 12 4889565 13 5708759 14 6763720 15 8077018 16 9751550 17 11908846 18 14690521 19 18245460 20 22755243 21 28415557 22 35367632 23 43652940 24 53303536 25 64167066 26 75953609 27 88262562 28 100601729 29 112368337 30 122992656 31 131911583 32 138601824 33 142713753 34 144020462 35 142511640 36 138397744 37 131914021 38 123443625 39 113570272 40 102733834 41 91416376 42 80097806 43 69147469 44 58795557 45 49346770 46 40872499 47 33445357 48 27071952 49 21701510 50 17243355 51 13586415 52 10658556 53 8324636 54 6489662 55 5073607 56 3975245 57 3143039 58 2506537 59 2025877 60 1665464 61 1387522 62 1182610 63 1022630 64 898122 65 804084 66 728717 67 665395 68 614117 69 570265 70 532347 71 498487 72 469321 73 443077 74 420424 75 397494 76 376834 77 358993 78 340261 79 324678 80 307664 81 294693 82 281330 83 268543 84 257505 85 247660 86 235535 87 227871 88 218804 89 211693 90 203629 91 197200 92 190408 93 184119 94 177942 95 172029 96 167617 97 162281 98 157970 99 152767 100 148981 101 144661 102 140826 103 136467 104 132766 105 128280 106 124592 107 120941 108 117607 109 115112 110 111346 111 108217 112 105101 113 101951 114 99380 115 96539 116 93461 117 91390 118 88355 119 86396 120 83904 121 81855 122 79252 123 78105 124 76194 125 74323 126 72952 127 70800 128 69433 129 67750 130 65842 131 63981 132 63289 133 61462 134 60115 135 59092 136 58380 137 56440 138 55277 139 54445 140 53220 141 52405 142 51009 143 50346 144 49187 145 48291 146 47237 147 46809 148 45932 149 45190 150 43713 151 42843 152 42209 153 41332 154 40769 155 39880 156 39428 157 38612 158 37788 159 37252 160 36294 161 35971 162 34940 163 34663 164 33291 165 33324 166 32364 167 31764 168 31516 169 30750 170 30392 171 29627 172 29319 173 28852 174 28655 175 28013 176 27738 177 27415 178 26984 179 26663 180 25869 181 25403 182 25264 183 24793 184 24239 185 23851 186 23718 187 22925 188 22791 189 22685 190 22351 191 22292 192 21581 193 21761 194 21182 195 20897 196 20615 197 20382 198 19953 199 19563 200 19410 201 18988 202 18898 203 18488 204 18576 205 18085 206 18073 207 17969 208 17440 209 17064 210 16945 211 16739 212 16483 213 16378 214 16209 215 15877 216 15631 217 15277 218 15385 219 15156 220 14998 221 14754 222 14508 223 14517 224 13994 225 14117 226 14031 227 13529 228 13741 229 13457 230 13288 231 13150 232 13107 233 12741 234 12714 235 12708 236 12249 237 12275 238 12126 239 12252 240 12090 241 11640 242 11545 243 11441 244 11276 245 11208 246 10960 247 10860 248 10841 249 10766 250 1906933