#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004480.hs38DH/SS6004480.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004480.hs38DH/QCmetrics/SS6004480.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 17.333 5.7826 17 3 0 0.072808 0.0039066 0.045487 0.018943 3.0148e-05 0.14118 0.99792 0.98963 0.94124 0.7057 0.31508 0.080831 0.01733 0.0031964 0.0012629 0.00068117 0.00043195 0.00029029 0.00020427 0.0001475 0.9907 20 coverage high_quality_coverage_count 0 315681 1 240592 2 268490 3 327147 4 424815 5 581043 6 838290 7 1254063 8 1891179 9 2797372 10 4000671 11 5478369 12 7142644 13 8840710 14 10366462 15 11557996 16 12266760 17 12413015 18 12023003 19 11157567 20 9949594 21 8542959 22 7072396 23 5666354 24 4401663 25 3326001 26 2445210 27 1761810 28 1250579 29 875700 30 612124 31 426954 32 302143 33 218596 34 161642 35 124172 36 98643 37 80385 38 67518 39 57811 40 49633 41 43092 42 37624 43 33272 44 29365 45 25704 46 22905 47 20031 48 17381 49 15109 50 13590 51 11998 52 10708 53 9521 54 8762 55 8067 56 7408 57 6695 58 6213 59 5525 60 5199 61 4695 62 4269 63 3852 64 3878 65 3524 66 3299 67 3289 68 3095 69 2809 70 2665 71 2535 72 2369 73 2295 74 2181 75 2041 76 1999 77 1883 78 1953 79 1627 80 1596 81 1564 82 1532 83 1484 84 1361 85 1169 86 1227 87 1087 88 1006 89 1059 90 1003 91 961 92 887 93 889 94 866 95 835 96 860 97 790 98 759 99 786 100 761 101 701 102 683 103 598 104 570 105 558 106 553 107 538 108 471 109 445 110 437 111 432 112 427 113 382 114 410 115 385 116 356 117 406 118 428 119 367 120 381 121 349 122 350 123 332 124 352 125 315 126 267 127 237 128 211 129 215 130 195 131 219 132 192 133 193 134 200 135 175 136 205 137 202 138 200 139 170 140 199 141 153 142 154 143 157 144 126 145 148 146 136 147 127 148 120 149 130 150 130 151 104 152 104 153 99 154 91 155 107 156 92 157 98 158 82 159 90 160 90 161 92 162 71 163 70 164 87 165 66 166 72 167 72 168 60 169 39 170 51 171 57 172 61 173 44 174 37 175 49 176 47 177 35 178 45 179 44 180 51 181 42 182 49 183 43 184 51 185 38 186 44 187 47 188 30 189 51 190 41 191 52 192 44 193 54 194 65 195 47 196 37 197 54 198 48 199 47 200 28 201 38 202 35 203 38 204 47 205 51 206 38 207 44 208 32 209 30 210 36 211 37 212 27 213 33 214 38 215 40 216 35 217 44 218 36 219 24 220 27 221 28 222 29 223 23 224 19 225 32 226 29 227 20 228 27 229 20 230 35 231 24 232 35 233 30 234 25 235 32 236 25 237 34 238 30 239 40 240 25 241 30 242 31 243 30 244 27 245 35 246 33 247 31 248 31 249 31 250 1399