#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004480.hs38DH/SS6004480.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004480.hs38DH/QCmetrics/SS6004480.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 22.455 27.653 18 4 0 0.14321 0.0023485 0.037096 0.0091066 0.33743 0.52919 0.99808 0.9919 0.95179 0.7513 0.39305 0.15118 0.071009 0.044099 0.035876 0.029397 0.024318 0.020755 0.018509 0.017217 0.99225 21 coverage high_quality_coverage_count 0 45366 1 26672 2 30920 3 37244 4 51213 5 71165 6 105820 7 162906 8 245835 9 362449 10 519937 11 715163 12 936775 13 1171699 14 1395209 15 1584393 16 1709207 17 1763010 18 1746215 19 1664911 20 1518916 21 1338296 22 1143861 23 949623 24 766262 25 603869 26 467975 27 356013 28 267854 29 199183 30 150031 31 113049 32 86127 33 66457 34 52995 35 43243 36 36932 37 32345 38 28709 39 26162 40 23886 41 22298 42 20856 43 20179 44 19378 45 18590 46 18085 47 17512 48 16912 49 16665 50 16343 51 16495 52 16152 53 15890 54 15621 55 14935 56 14894 57 14827 58 14319 59 13672 60 13612 61 13389 62 12681 63 12546 64 12272 65 12090 66 11634 67 11165 68 10533 69 10127 70 9869 71 9407 72 9081 73 9043 74 8508 75 8348 76 7949 77 7569 78 7384 79 7058 80 6637 81 6305 82 6110 83 5786 84 5389 85 5255 86 4775 87 4523 88 4178 89 4129 90 3801 91 3582 92 3497 93 3206 94 3072 95 2922 96 2803 97 2629 98 2498 99 2529 100 2563 101 2393 102 2392 103 2439 104 2215 105 2081 106 2153 107 2137 108 2092 109 2013 110 2012 111 1986 112 1870 113 1822 114 1756 115 1780 116 1695 117 1732 118 1771 119 1702 120 1660 121 1580 122 1464 123 1436 124 1515 125 1473 126 1514 127 1493 128 1487 129 1427 130 1362 131 1469 132 1320 133 1334 134 1366 135 1280 136 1268 137 1280 138 1260 139 1169 140 1222 141 1184 142 1196 143 1265 144 1199 145 1180 146 1103 147 1091 148 1169 149 1140 150 1122 151 1148 152 1095 153 1082 154 1078 155 1037 156 1074 157 1072 158 1059 159 1038 160 1029 161 1026 162 1003 163 1038 164 1024 165 1068 166 1045 167 1059 168 1024 169 996 170 1016 171 1018 172 946 173 964 174 938 175 887 176 937 177 993 178 1013 179 902 180 906 181 859 182 875 183 969 184 878 185 946 186 948 187 925 188 956 189 873 190 900 191 849 192 861 193 872 194 888 195 873 196 871 197 831 198 858 199 916 200 895 201 865 202 844 203 863 204 829 205 876 206 820 207 792 208 833 209 811 210 846 211 895 212 877 213 878 214 839 215 877 216 840 217 819 218 799 219 843 220 798 221 727 222 754 223 713 224 778 225 748 226 747 227 744 228 689 229 733 230 684 231 713 232 705 233 723 234 715 235 695 236 671 237 643 238 653 239 672 240 672 241 651 242 662 243 650 244 666 245 686 246 695 247 661 248 663 249 681 250 239916