Ocypus olens genome assembly, chromosome: 9.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 9.
sequence version: OU343055.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 57303393
topology: linear
RO_0000086: SO_0000987
location: 1..57303393
location: region:1-57303393:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57303393:1
position: 57303393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-57303393:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 9
mol type: genomic DNA

662956
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6355495..6355694
location: region:6355495-6355694:1
BFO_0000051: feature:6355495-6355694:1:region
SIO_000974: a2874f33-11f5-415f-aa6e-b495cffc354b

position:6355495:1
position: 6355495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6355694:1
position: 6355694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2874f33-11f5-415f-aa6e-b495cffc354b
SIO_000300: 1
SIO_000628: feature:6355495-6355694:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6998562..6998761
location: region:6998562-6998761:1
BFO_0000051: feature:6998562-6998761:1:region
SIO_000974: 04acec74-19cb-4ee3-864b-9db0f33225fe

position:6998562:1
position: 6998562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6998761:1
position: 6998761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6998562-6998761:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7796950..7797149
location: region:7796950-7797149:1
BFO_0000051: feature:7796950-7797149:1:region
SIO_000974: 08afacf5-dc9c-43ea-8821-1a5216faaa21

position:7796950:1
position: 7796950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7797149:1
position: 7797149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7796950-7797149:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10669888..10670087
location: region:10669888-10670087:1
BFO_0000051: feature:10669888-10670087:1:region
SIO_000974: 41a373d8-6b16-4c5d-a37e-33466c811b84

position:10669888:1
position: 10669888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10670087:1
position: 10670087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10669888-10670087:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10969646..10970145
location: region:10969646-10970145:1
BFO_0000051: feature:10969646-10970145:1:region
SIO_000974: 5ae1a4ab-1db2-4aa2-9783-99b496c40548

position:10969646:1
position: 10969646
reference: sequence
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position:10970145:1
position: 10970145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10969646-10970145:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11249152..11249351
location: region:11249152-11249351:1
BFO_0000051: feature:11249152-11249351:1:region
SIO_000974: 4bc7c124-3c4c-482e-a9ed-11f64fbc33f0

position:11249152:1
position: 11249152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11249351:1
position: 11249351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11249152-11249351:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11474617..11474816
location: region:11474617-11474816:1
BFO_0000051: feature:11474617-11474816:1:region
SIO_000974: c93b6b46-0ac6-41ea-b112-f06dec03fd4b

position:11474617:1
position: 11474617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11474816:1
position: 11474816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11474617-11474816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16592520..16593019
location: region:16592520-16593019:1
BFO_0000051: feature:16592520-16593019:1:region
SIO_000974: cfb1f0a7-0998-42e7-96f2-a0c7917ed6f5

position:16592520:1
position: 16592520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16593019:1
position: 16593019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:16592520-16593019:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31481634..31481833
location: region:31481634-31481833:1
BFO_0000051: feature:31481634-31481833:1:region
SIO_000974: 23a14963-de9b-487f-98d2-c32347b49e80

position:31481634:1
position: 31481634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31481833:1
position: 31481833
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:31481634-31481833:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31660358..31660557
location: region:31660358-31660557:1
BFO_0000051: feature:31660358-31660557:1:region
SIO_000974: cb43e36f-c50a-486d-a9d2-61fc1bcb7837

position:31660358:1
position: 31660358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31660557:1
position: 31660557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:31660358-31660557:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32224787..32224986
location: region:32224787-32224986:1
BFO_0000051: feature:32224787-32224986:1:region
SIO_000974: 1ddbdb63-b262-4cdd-b725-45ee99620dd3

position:32224787:1
position: 32224787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32224986:1
position: 32224986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:32224787-32224986:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33081977..33082176
location: region:33081977-33082176:1
BFO_0000051: feature:33081977-33082176:1:region
SIO_000974: b076ab63-5005-45fa-b2ef-82f564a80398

position:33081977:1
position: 33081977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33082176:1
position: 33082176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33081977-33082176:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34133999..34134198
location: region:34133999-34134198:1
BFO_0000051: feature:34133999-34134198:1:region
SIO_000974: f826ab66-7121-4c63-ad6b-81f595a44c99

position:34133999:1
position: 34133999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34134198:1
position: 34134198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:34133999-34134198:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37422482..37422681
location: region:37422482-37422681:1
BFO_0000051: feature:37422482-37422681:1:region
SIO_000974: c7a6b971-a136-4b37-8230-269d49189e66

position:37422482:1
position: 37422482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37422681:1
position: 37422681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:37422482-37422681:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44412972..44413171
location: region:44412972-44413171:1
BFO_0000051: feature:44412972-44413171:1:region
SIO_000974: 7481924f-c7f7-4b0a-8153-c22ce908ef90

position:44412972:1
position: 44412972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44413171:1
position: 44413171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:44412972-44413171:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 46573878..46574377
location: region:46573878-46574377:1
BFO_0000051: feature:46573878-46574377:1:region
SIO_000974: 75012e97-b979-4632-99a2-a478b6f494a8

position:46573878:1
position: 46573878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46574377:1
position: 46574377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:46573878-46574377:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47124875..47125074
location: region:47124875-47125074:1
BFO_0000051: feature:47124875-47125074:1:region
SIO_000974: 696986d4-3c65-4fce-a145-22487bd6af5a

position:47124875:1
position: 47124875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47125074:1
position: 47125074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:47124875-47125074:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47237284..47237483
location: region:47237284-47237483:1
BFO_0000051: feature:47237284-47237483:1:region
SIO_000974: 8684c8e7-596f-40c1-b841-84b7122c26d5

position:47237284:1
position: 47237284
reference: sequence
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position:47237483:1
position: 47237483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:47237284-47237483:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49601410..49601609
location: region:49601410-49601609:1
BFO_0000051: feature:49601410-49601609:1:region
SIO_000974: 6056a72d-6204-49bc-ad5e-fe1af2cf1513

position:49601410:1
position: 49601410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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position: 49601609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:49601410-49601609:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:49713075-49713274:1
BFO_0000051: feature:49713075-49713274:1:region
SIO_000974: 7f8f2869-45b6-4abc-bf33-ec27c39cde0d

position:49713075:1
position: 49713075
reference: sequence
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type: ExactPosition

position:49713274:1
position: 49713274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:49713075-49713274:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 52474095..52474594
location: region:52474095-52474594:1
BFO_0000051: feature:52474095-52474594:1:region
SIO_000974: 696d79bc-ceb8-4d05-b08d-2ef9fd5960d5

position:52474095:1
position: 52474095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52474594:1
position: 52474594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:52474095-52474594:1:region

Ocypus olens genome assembly, chromosome: 10.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 10.
sequence version: OU343056.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 56543454
topology: linear
RO_0000086: SO_0000987
location: 1..56543454
location: region:1-56543454:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56543454:1
position: 56543454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-56543454:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5537959..5538158
location: region:5537959-5538158:1
BFO_0000051: feature:5537959-5538158:1:region
SIO_000974: 4daa0621-2f68-4152-bfd6-3d53db3ed058

position:5537959:1
position: 5537959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5538158:1
position: 5538158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5537959-5538158:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5912603..5913102
location: region:5912603-5913102:1
BFO_0000051: feature:5912603-5913102:1:region
SIO_000974: f55fbe6e-d6d7-476d-90c9-a05bcebd4974

position:5912603:1
position: 5912603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5913102:1
position: 5913102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5912603-5913102:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6357230..6357729
location: region:6357230-6357729:1
BFO_0000051: feature:6357230-6357729:1:region
SIO_000974: e192bc26-884c-4957-9ced-c0761b24adc2

position:6357230:1
position: 6357230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6357729:1
position: 6357729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6357230-6357729:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7178629..7178828
location: region:7178629-7178828:1
BFO_0000051: feature:7178629-7178828:1:region
SIO_000974: aa40c966-98d8-48f8-8535-c93d2d21979b

position:7178629:1
position: 7178629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7178828:1
position: 7178828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7178629-7178828:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 20886430..20886929
location: region:20886430-20886929:1
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SIO_000300: 1
SIO_000628: feature:20886430-20886929:1:region

assembly_gap
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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 662956
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:28818012-28818211:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:29119851-29120050:1:region
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SIO_000300: 1
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RO_0002162: 662956
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:29393618-29393817:1:region
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SIO_000300: 1
SIO_000628: feature:29393618-29393817:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:29600061-29600260:1:region
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SIO_000300: 1
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RO_0002162: 662956
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:29777703-29777902:1:region
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SIO_000300: 1
SIO_000628: feature:29777703-29777902:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:29942961-29943160:1:region
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SIO_000300: 1
SIO_000628: feature:29942961-29943160:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30104925-30105124:1:region
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SIO_000300: 1
SIO_000628: feature:30104925-30105124:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30264494-30264693:1:region
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SIO_000300: 1
SIO_000628: feature:30264494-30264693:1:region

assembly_gap
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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30406332-30406531:1:region
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SIO_000300: 1
SIO_000628: feature:30406332-30406531:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30513504-30513703:1:region
SIO_000974: 4e8cb441-bd5e-4772-ac6a-175329ae6ffc

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SIO_000300: 1
SIO_000628: feature:30513504-30513703:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30616427-30616626:1:region
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SIO_000300: 1
SIO_000628: feature:30616427-30616626:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30699529-30699728:1:region
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SIO_000300: 1
SIO_000628: feature:30699529-30699728:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30782601-30782800:1:region
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SIO_000300: 1
SIO_000628: feature:30782601-30782800:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30863593-30863792:1:region
SIO_000974: 71d60de5-c500-4cd9-8fd9-396a9ca25a5a

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reference: sequence
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SIO_000300: 1
SIO_000628: feature:30863593-30863792:1:region

assembly_gap
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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30909468-30909667:1:region
SIO_000974: 3cf6b854-ba31-4222-9543-992c6270655a

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SIO_000300: 1
SIO_000628: feature:30909468-30909667:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30938634-30938833:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:30938634-30938833:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:35612680-35612879:1:region
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SIO_000300: 1
SIO_000628: feature:35612680-35612879:1:region

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RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:35837443-35837942:1:region
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SIO_000300: 1
SIO_000628: feature:35837443-35837942:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:36145719-36145918:1:region
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SIO_000300: 1
SIO_000628: feature:36145719-36145918:1:region

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RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:37842091-37842590:1:region
SIO_000974: 84091ad5-70e6-4fe5-9159-c3c6e9a2b9e5

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reference: sequence
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SIO_000300: 1
SIO_000628: feature:37842091-37842590:1:region

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RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:41612187-41612686:1:region
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SIO_000300: 1
SIO_000628: feature:41612187-41612686:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:46630368-46630567:1:region
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SIO_000300: 1
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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:46881668-46881867:1:region
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SIO_000300: 1
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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:51278549-51278748:1:region
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SIO_000300: 1
SIO_000628: feature:51278549-51278748:1:region

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RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:52281482-52281681:1:region
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SIO_000300: 1
SIO_000628: feature:52281482-52281681:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52537383..52537582
location: region:52537383-52537582:1
BFO_0000051: feature:52537383-52537582:1:region
SIO_000974: db98c142-58f1-4e77-b81f-a697c2b20cb8

position:52537383:1
position: 52537383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52537582:1
position: 52537582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db98c142-58f1-4e77-b81f-a697c2b20cb8
SIO_000300: 1
SIO_000628: feature:52537383-52537582:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 55464299..55464798
location: region:55464299-55464798:1
BFO_0000051: feature:55464299-55464798:1:region
SIO_000974: 89620ba5-8ac4-47c3-909a-c6730cb89358

position:55464299:1
position: 55464299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55464798:1
position: 55464798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

89620ba5-8ac4-47c3-909a-c6730cb89358
SIO_000300: 1
SIO_000628: feature:55464299-55464798:1:region

Ocypus olens genome assembly, chromosome: X.
type: Entry
definition: Ocypus olens genome assembly, chromosome: X.
sequence version: OU343057.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 56488273
topology: linear
RO_0000086: SO_0000987
location: 1..56488273
location: region:1-56488273:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56488273:1
position: 56488273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-56488273:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: X
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6480707..6480906
location: region:6480707-6480906:1
BFO_0000051: feature:6480707-6480906:1:region
SIO_000974: 3f25cb42-4a77-4a0e-8d1e-60fd9e85424a

position:6480707:1
position: 6480707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6480906:1
position: 6480906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3f25cb42-4a77-4a0e-8d1e-60fd9e85424a
SIO_000300: 1
SIO_000628: feature:6480707-6480906:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6962032..6962231
location: region:6962032-6962231:1
BFO_0000051: feature:6962032-6962231:1:region
SIO_000974: df4c4fef-b58b-434f-8645-e95c63a2e6b9

position:6962032:1
position: 6962032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6962231:1
position: 6962231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df4c4fef-b58b-434f-8645-e95c63a2e6b9
SIO_000300: 1
SIO_000628: feature:6962032-6962231:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16338728..16339227
location: region:16338728-16339227:1
BFO_0000051: feature:16338728-16339227:1:region
SIO_000974: 52ed7ab8-f14a-4f2c-b29f-4f0f40046af0

position:16338728:1
position: 16338728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16339227:1
position: 16339227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52ed7ab8-f14a-4f2c-b29f-4f0f40046af0
SIO_000300: 1
SIO_000628: feature:16338728-16339227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28800080..28800279
location: region:28800080-28800279:1
BFO_0000051: feature:28800080-28800279:1:region
SIO_000974: bc7c53f3-3856-4f7a-abda-0f492f8228e2

position:28800080:1
position: 28800080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28800279:1
position: 28800279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc7c53f3-3856-4f7a-abda-0f492f8228e2
SIO_000300: 1
SIO_000628: feature:28800080-28800279:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29581103..29581302
location: region:29581103-29581302:1
BFO_0000051: feature:29581103-29581302:1:region
SIO_000974: 1ecf6ffc-5a6a-4df1-a046-077bf470f3fe

position:29581103:1
position: 29581103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29581302:1
position: 29581302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ecf6ffc-5a6a-4df1-a046-077bf470f3fe
SIO_000300: 1
SIO_000628: feature:29581103-29581302:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32301849..32302048
location: region:32301849-32302048:1
BFO_0000051: feature:32301849-32302048:1:region
SIO_000974: 0bbdd8db-51e9-4be8-bb5d-71fcefc94825

position:32301849:1
position: 32301849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32302048:1
position: 32302048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0bbdd8db-51e9-4be8-bb5d-71fcefc94825
SIO_000300: 1
SIO_000628: feature:32301849-32302048:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32603199..32603398
location: region:32603199-32603398:1
BFO_0000051: feature:32603199-32603398:1:region
SIO_000974: 549dd37a-7dd0-4743-9bcf-1ed4f90a965b

position:32603199:1
position: 32603199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32603398:1
position: 32603398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

549dd37a-7dd0-4743-9bcf-1ed4f90a965b
SIO_000300: 1
SIO_000628: feature:32603199-32603398:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33971441..33971640
location: region:33971441-33971640:1
BFO_0000051: feature:33971441-33971640:1:region
SIO_000974: c5079666-281e-4eac-80b2-a681c445fa43

position:33971441:1
position: 33971441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33971640:1
position: 33971640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5079666-281e-4eac-80b2-a681c445fa43
SIO_000300: 1
SIO_000628: feature:33971441-33971640:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34766678..34766877
location: region:34766678-34766877:1
BFO_0000051: feature:34766678-34766877:1:region
SIO_000974: f89229f7-51a6-431f-92ed-8f316337bddd

position:34766678:1
position: 34766678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34766877:1
position: 34766877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:34766678-34766877:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35399663..35399862
location: region:35399663-35399862:1
BFO_0000051: feature:35399663-35399862:1:region
SIO_000974: 1247fa1d-8877-469c-9b44-a3086e9da9db

position:35399663:1
position: 35399663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35399862:1
position: 35399862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1247fa1d-8877-469c-9b44-a3086e9da9db
SIO_000300: 1
SIO_000628: feature:35399663-35399862:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 38987194..38987693
location: region:38987194-38987693:1
BFO_0000051: feature:38987194-38987693:1:region
SIO_000974: 3d4a965e-95cf-40f4-9ee2-363f229db6f6

position:38987194:1
position: 38987194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38987693:1
position: 38987693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d4a965e-95cf-40f4-9ee2-363f229db6f6
SIO_000300: 1
SIO_000628: feature:38987194-38987693:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 40125506..40126005
location: region:40125506-40126005:1
BFO_0000051: feature:40125506-40126005:1:region
SIO_000974: 363d8f0a-7226-4bd9-b8a7-0b4b820eb6d2

position:40125506:1
position: 40125506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40126005:1
position: 40126005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

363d8f0a-7226-4bd9-b8a7-0b4b820eb6d2
SIO_000300: 1
SIO_000628: feature:40125506-40126005:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 41034426..41034925
location: region:41034426-41034925:1
BFO_0000051: feature:41034426-41034925:1:region
SIO_000974: 75439582-e6f9-4c94-afcc-1b585bb38549

position:41034426:1
position: 41034426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41034925:1
position: 41034925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

75439582-e6f9-4c94-afcc-1b585bb38549
SIO_000300: 1
SIO_000628: feature:41034426-41034925:1:region

Ocypus olens genome assembly, chromosome: 12.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 12.
sequence version: OU343058.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 55638586
topology: linear
RO_0000086: SO_0000987
location: 1..55638586
location: region:1-55638586:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55638586:1
position: 55638586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-55638586:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4426813..4427312
location: region:4426813-4427312:1
BFO_0000051: feature:4426813-4427312:1:region
SIO_000974: ea956d4f-80fa-4264-b600-2a7973473ab5

position:4426813:1
position: 4426813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4427312:1
position: 4427312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ea956d4f-80fa-4264-b600-2a7973473ab5
SIO_000300: 1
SIO_000628: feature:4426813-4427312:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8036166..8036365
location: region:8036166-8036365:1
BFO_0000051: feature:8036166-8036365:1:region
SIO_000974: 56d580c9-5eb6-4b8a-b66c-089e054f8a83

position:8036166:1
position: 8036166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8036365:1
position: 8036365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56d580c9-5eb6-4b8a-b66c-089e054f8a83
SIO_000300: 1
SIO_000628: feature:8036166-8036365:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8362078..8362577
location: region:8362078-8362577:1
BFO_0000051: feature:8362078-8362577:1:region
SIO_000974: b7973ca0-1a28-4b2c-9a5a-4a58536d8e27

position:8362078:1
position: 8362078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8362577:1
position: 8362577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7973ca0-1a28-4b2c-9a5a-4a58536d8e27
SIO_000300: 1
SIO_000628: feature:8362078-8362577:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8917287..8917786
location: region:8917287-8917786:1
BFO_0000051: feature:8917287-8917786:1:region
SIO_000974: 4ef9c1bc-54e7-4339-a719-b6bebf6b6849

position:8917287:1
position: 8917287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8917786:1
position: 8917786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8917287-8917786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9384775..9384974
location: region:9384775-9384974:1
BFO_0000051: feature:9384775-9384974:1:region
SIO_000974: 2df7bbcb-d185-427e-b546-c8319a33d386

position:9384775:1
position: 9384775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9384974:1
position: 9384974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2df7bbcb-d185-427e-b546-c8319a33d386
SIO_000300: 1
SIO_000628: feature:9384775-9384974:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10735265..10735764
location: region:10735265-10735764:1
BFO_0000051: feature:10735265-10735764:1:region
SIO_000974: ac4cffa6-59c2-4dcc-a8bc-1ae6d496df8b

position:10735265:1
position: 10735265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10735764:1
position: 10735764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac4cffa6-59c2-4dcc-a8bc-1ae6d496df8b
SIO_000300: 1
SIO_000628: feature:10735265-10735764:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11000278..11000477
location: region:11000278-11000477:1
BFO_0000051: feature:11000278-11000477:1:region
SIO_000974: a8728ac6-e301-49a8-a9a6-bbad0c7a67ed

position:11000278:1
position: 11000278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11000477:1
position: 11000477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8728ac6-e301-49a8-a9a6-bbad0c7a67ed
SIO_000300: 1
SIO_000628: feature:11000278-11000477:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11652153..11652652
location: region:11652153-11652652:1
BFO_0000051: feature:11652153-11652652:1:region
SIO_000974: 34b6612d-1394-4389-8f31-101b66b5da56

position:11652153:1
position: 11652153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11652652:1
position: 11652652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34b6612d-1394-4389-8f31-101b66b5da56
SIO_000300: 1
SIO_000628: feature:11652153-11652652:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11938164..11938363
location: region:11938164-11938363:1
BFO_0000051: feature:11938164-11938363:1:region
SIO_000974: 9f133b1f-f33a-45dc-9191-27e171c6ec77

position:11938164:1
position: 11938164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11938363:1
position: 11938363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f133b1f-f33a-45dc-9191-27e171c6ec77
SIO_000300: 1
SIO_000628: feature:11938164-11938363:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21043563..21043762
location: region:21043563-21043762:1
BFO_0000051: feature:21043563-21043762:1:region
SIO_000974: cb22bbc1-a016-4564-8f81-d5c051a31228

position:21043563:1
position: 21043563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21043762:1
position: 21043762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb22bbc1-a016-4564-8f81-d5c051a31228
SIO_000300: 1
SIO_000628: feature:21043563-21043762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23248894..23249093
location: region:23248894-23249093:1
BFO_0000051: feature:23248894-23249093:1:region
SIO_000974: e59b4719-10eb-4965-870e-1511b8d98dd9

position:23248894:1
position: 23248894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23249093:1
position: 23249093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e59b4719-10eb-4965-870e-1511b8d98dd9
SIO_000300: 1
SIO_000628: feature:23248894-23249093:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24591764..24591963
location: region:24591764-24591963:1
BFO_0000051: feature:24591764-24591963:1:region
SIO_000974: 37108ac4-f597-439d-8c9b-592c4060291d

position:24591764:1
position: 24591764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24591963:1
position: 24591963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37108ac4-f597-439d-8c9b-592c4060291d
SIO_000300: 1
SIO_000628: feature:24591764-24591963:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24712240..24712439
location: region:24712240-24712439:1
BFO_0000051: feature:24712240-24712439:1:region
SIO_000974: 7d138015-bdc1-4266-b99a-5e6c7082c723

position:24712240:1
position: 24712240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24712439:1
position: 24712439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d138015-bdc1-4266-b99a-5e6c7082c723
SIO_000300: 1
SIO_000628: feature:24712240-24712439:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28141445..28141644
location: region:28141445-28141644:1
BFO_0000051: feature:28141445-28141644:1:region
SIO_000974: b97ecca4-b4ee-4842-a4a1-8e766b056c0d

position:28141445:1
position: 28141445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28141644:1
position: 28141644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b97ecca4-b4ee-4842-a4a1-8e766b056c0d
SIO_000300: 1
SIO_000628: feature:28141445-28141644:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28462410..28462609
location: region:28462410-28462609:1
BFO_0000051: feature:28462410-28462609:1:region
SIO_000974: e9540a6b-a59a-46d7-a898-83d608c7d6f0

position:28462410:1
position: 28462410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28462609:1
position: 28462609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9540a6b-a59a-46d7-a898-83d608c7d6f0
SIO_000300: 1
SIO_000628: feature:28462410-28462609:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28873560..28873759
location: region:28873560-28873759:1
BFO_0000051: feature:28873560-28873759:1:region
SIO_000974: 895f70ae-2e2a-442b-898b-685588937648

position:28873560:1
position: 28873560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28873759:1
position: 28873759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

895f70ae-2e2a-442b-898b-685588937648
SIO_000300: 1
SIO_000628: feature:28873560-28873759:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29257577..29257776
location: region:29257577-29257776:1
BFO_0000051: feature:29257577-29257776:1:region
SIO_000974: d69586fa-9867-41e6-808d-0a4ced8fd554

position:29257577:1
position: 29257577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29257776:1
position: 29257776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d69586fa-9867-41e6-808d-0a4ced8fd554
SIO_000300: 1
SIO_000628: feature:29257577-29257776:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29620603..29620802
location: region:29620603-29620802:1
BFO_0000051: feature:29620603-29620802:1:region
SIO_000974: c70019e1-1124-4d9b-acda-e77d6cb148f3

position:29620603:1
position: 29620603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29620802:1
position: 29620802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c70019e1-1124-4d9b-acda-e77d6cb148f3
SIO_000300: 1
SIO_000628: feature:29620603-29620802:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29896136..29896335
location: region:29896136-29896335:1
BFO_0000051: feature:29896136-29896335:1:region
SIO_000974: 5631d57d-404c-4565-bff9-ba41f0a9e0fc

position:29896136:1
position: 29896136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29896335:1
position: 29896335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5631d57d-404c-4565-bff9-ba41f0a9e0fc
SIO_000300: 1
SIO_000628: feature:29896136-29896335:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30112298..30112497
location: region:30112298-30112497:1
BFO_0000051: feature:30112298-30112497:1:region
SIO_000974: f6d7e0b1-0305-4440-9c1c-9091a1bdb69e

position:30112298:1
position: 30112298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30112497:1
position: 30112497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6d7e0b1-0305-4440-9c1c-9091a1bdb69e
SIO_000300: 1
SIO_000628: feature:30112298-30112497:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30220612..30220811
location: region:30220612-30220811:1
BFO_0000051: feature:30220612-30220811:1:region
SIO_000974: 1ff65dc1-e3b1-4db3-8882-10b542ff59ea

position:30220612:1
position: 30220612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30220811:1
position: 30220811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ff65dc1-e3b1-4db3-8882-10b542ff59ea
SIO_000300: 1
SIO_000628: feature:30220612-30220811:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30321489..30321688
location: region:30321489-30321688:1
BFO_0000051: feature:30321489-30321688:1:region
SIO_000974: 51ff136b-719d-4fe3-8a3e-b174b3a1b0b6

position:30321489:1
position: 30321489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30321688:1
position: 30321688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51ff136b-719d-4fe3-8a3e-b174b3a1b0b6
SIO_000300: 1
SIO_000628: feature:30321489-30321688:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48912585..48912784
location: region:48912585-48912784:1
BFO_0000051: feature:48912585-48912784:1:region
SIO_000974: 8ec49376-87be-4192-8219-e197f67ffaab

position:48912585:1
position: 48912585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48912784:1
position: 48912784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ec49376-87be-4192-8219-e197f67ffaab
SIO_000300: 1
SIO_000628: feature:48912585-48912784:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 49931082..49931581
location: region:49931082-49931581:1
BFO_0000051: feature:49931082-49931581:1:region
SIO_000974: 88e63870-989e-4d18-93a1-d48bfc27ccf6

position:49931082:1
position: 49931082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49931581:1
position: 49931581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:49931082-49931581:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50629621..50629820
location: region:50629621-50629820:1
BFO_0000051: feature:50629621-50629820:1:region
SIO_000974: 26079f99-7a12-4704-9546-d08a3907bab3

position:50629621:1
position: 50629621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50629820:1
position: 50629820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26079f99-7a12-4704-9546-d08a3907bab3
SIO_000300: 1
SIO_000628: feature:50629621-50629820:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 52581105..52581604
location: region:52581105-52581604:1
BFO_0000051: feature:52581105-52581604:1:region
SIO_000974: 108d9ffb-7c92-4be2-a218-b330188197cf

position:52581105:1
position: 52581105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52581604:1
position: 52581604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

108d9ffb-7c92-4be2-a218-b330188197cf
SIO_000300: 1
SIO_000628: feature:52581105-52581604:1:region

Ocypus olens genome assembly, chromosome: 13.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 13.
sequence version: OU343059.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 54627788
topology: linear
RO_0000086: SO_0000987
location: 1..54627788
location: region:1-54627788:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54627788:1
position: 54627788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54627788:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7860691..7860890
location: region:7860691-7860890:1
BFO_0000051: feature:7860691-7860890:1:region
SIO_000974: e2934eb9-9d5c-4a5f-8326-0a77e76c7518

position:7860691:1
position: 7860691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7860890:1
position: 7860890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2934eb9-9d5c-4a5f-8326-0a77e76c7518
SIO_000300: 1
SIO_000628: feature:7860691-7860890:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9039765..9040264
location: region:9039765-9040264:1
BFO_0000051: feature:9039765-9040264:1:region
SIO_000974: 64d277a2-607d-4583-a057-7cea763a46ec

position:9039765:1
position: 9039765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9040264:1
position: 9040264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64d277a2-607d-4583-a057-7cea763a46ec
SIO_000300: 1
SIO_000628: feature:9039765-9040264:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9752853..9753352
location: region:9752853-9753352:1
BFO_0000051: feature:9752853-9753352:1:region
SIO_000974: ce991105-3456-46c5-b0d4-c5f68a267867

position:9752853:1
position: 9752853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9753352:1
position: 9753352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ce991105-3456-46c5-b0d4-c5f68a267867
SIO_000300: 1
SIO_000628: feature:9752853-9753352:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10239949..10240148
location: region:10239949-10240148:1
BFO_0000051: feature:10239949-10240148:1:region
SIO_000974: 15b1d7f4-c568-488e-b5e6-8ac422b6e0b0

position:10239949:1
position: 10239949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10240148:1
position: 10240148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

15b1d7f4-c568-488e-b5e6-8ac422b6e0b0
SIO_000300: 1
SIO_000628: feature:10239949-10240148:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11347523..11348022
location: region:11347523-11348022:1
BFO_0000051: feature:11347523-11348022:1:region
SIO_000974: 92f15a09-599a-43d9-bc8e-95435c4ce421

position:11347523:1
position: 11347523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11348022:1
position: 11348022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92f15a09-599a-43d9-bc8e-95435c4ce421
SIO_000300: 1
SIO_000628: feature:11347523-11348022:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11977805..11978004
location: region:11977805-11978004:1
BFO_0000051: feature:11977805-11978004:1:region
SIO_000974: 66ae1352-0b57-43bc-a2e5-1e14fe84cd93

position:11977805:1
position: 11977805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11978004:1
position: 11978004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

66ae1352-0b57-43bc-a2e5-1e14fe84cd93
SIO_000300: 1
SIO_000628: feature:11977805-11978004:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16051347..16051546
location: region:16051347-16051546:1
BFO_0000051: feature:16051347-16051546:1:region
SIO_000974: 6cba00b4-774c-455d-a256-75b37de9b113

position:16051347:1
position: 16051347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16051546:1
position: 16051546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6cba00b4-774c-455d-a256-75b37de9b113
SIO_000300: 1
SIO_000628: feature:16051347-16051546:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16933553..16934052
location: region:16933553-16934052:1
BFO_0000051: feature:16933553-16934052:1:region
SIO_000974: a321cb9f-3764-48cb-ab11-d3f759835ba2

position:16933553:1
position: 16933553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16934052:1
position: 16934052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a321cb9f-3764-48cb-ab11-d3f759835ba2
SIO_000300: 1
SIO_000628: feature:16933553-16934052:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19235374..19235573
location: region:19235374-19235573:1
BFO_0000051: feature:19235374-19235573:1:region
SIO_000974: 1eb448a0-582a-4f59-a5f6-d1fdfa4407b9

position:19235374:1
position: 19235374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19235573:1
position: 19235573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1eb448a0-582a-4f59-a5f6-d1fdfa4407b9
SIO_000300: 1
SIO_000628: feature:19235374-19235573:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22424017..22424216
location: region:22424017-22424216:1
BFO_0000051: feature:22424017-22424216:1:region
SIO_000974: 0ec332ca-7e61-4b82-adaf-d5b0cea292b9

position:22424017:1
position: 22424017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22424216:1
position: 22424216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0ec332ca-7e61-4b82-adaf-d5b0cea292b9
SIO_000300: 1
SIO_000628: feature:22424017-22424216:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28215617..28215816
location: region:28215617-28215816:1
BFO_0000051: feature:28215617-28215816:1:region
SIO_000974: 3e18a415-fbb7-4985-8cdb-8c21e344f73f

position:28215617:1
position: 28215617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28215816:1
position: 28215816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e18a415-fbb7-4985-8cdb-8c21e344f73f
SIO_000300: 1
SIO_000628: feature:28215617-28215816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32695545..32695744
location: region:32695545-32695744:1
BFO_0000051: feature:32695545-32695744:1:region
SIO_000974: c4f3421a-5c50-451c-a602-cd11cc443a68

position:32695545:1
position: 32695545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32695744:1
position: 32695744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4f3421a-5c50-451c-a602-cd11cc443a68
SIO_000300: 1
SIO_000628: feature:32695545-32695744:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32852998..32853197
location: region:32852998-32853197:1
BFO_0000051: feature:32852998-32853197:1:region
SIO_000974: de9a1069-1900-41a8-ad38-56cedc4c442d

position:32852998:1
position: 32852998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32853197:1
position: 32853197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

de9a1069-1900-41a8-ad38-56cedc4c442d
SIO_000300: 1
SIO_000628: feature:32852998-32853197:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33124734..33124933
location: region:33124734-33124933:1
BFO_0000051: feature:33124734-33124933:1:region
SIO_000974: d1384365-f2df-491b-bf61-92f23c07ed1c

position:33124734:1
position: 33124734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33124933:1
position: 33124933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1384365-f2df-491b-bf61-92f23c07ed1c
SIO_000300: 1
SIO_000628: feature:33124734-33124933:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33979144..33979343
location: region:33979144-33979343:1
BFO_0000051: feature:33979144-33979343:1:region
SIO_000974: b21ca41a-18d7-4aa4-b011-2e8c4c1fe87d

position:33979144:1
position: 33979144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33979343:1
position: 33979343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b21ca41a-18d7-4aa4-b011-2e8c4c1fe87d
SIO_000300: 1
SIO_000628: feature:33979144-33979343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35036241..35036440
location: region:35036241-35036440:1
BFO_0000051: feature:35036241-35036440:1:region
SIO_000974: fd092751-f548-4ada-9e4b-0f09d11356c5

position:35036241:1
position: 35036241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35036440:1
position: 35036440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd092751-f548-4ada-9e4b-0f09d11356c5
SIO_000300: 1
SIO_000628: feature:35036241-35036440:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35521664..35521863
location: region:35521664-35521863:1
BFO_0000051: feature:35521664-35521863:1:region
SIO_000974: 62b54511-3f92-4abc-bba2-9416bc5dd92c

position:35521664:1
position: 35521664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35521863:1
position: 35521863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

62b54511-3f92-4abc-bba2-9416bc5dd92c
SIO_000300: 1
SIO_000628: feature:35521664-35521863:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36578856..36579055
location: region:36578856-36579055:1
BFO_0000051: feature:36578856-36579055:1:region
SIO_000974: 54b78b5c-d99e-4763-b930-5330e50fcb6e

position:36578856:1
position: 36578856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36579055:1
position: 36579055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

54b78b5c-d99e-4763-b930-5330e50fcb6e
SIO_000300: 1
SIO_000628: feature:36578856-36579055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36947300..36947499
location: region:36947300-36947499:1
BFO_0000051: feature:36947300-36947499:1:region
SIO_000974: 58f55734-c622-4649-a148-2b95f42f9405

position:36947300:1
position: 36947300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36947499:1
position: 36947499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

58f55734-c622-4649-a148-2b95f42f9405
SIO_000300: 1
SIO_000628: feature:36947300-36947499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40968574..40968773
location: region:40968574-40968773:1
BFO_0000051: feature:40968574-40968773:1:region
SIO_000974: 91fdba7f-0e91-4822-8fd1-af46bdff5157

position:40968574:1
position: 40968574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40968773:1
position: 40968773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

91fdba7f-0e91-4822-8fd1-af46bdff5157
SIO_000300: 1
SIO_000628: feature:40968574-40968773:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41923868..41924067
location: region:41923868-41924067:1
BFO_0000051: feature:41923868-41924067:1:region
SIO_000974: 64b7f0e8-44f9-4e46-8ee0-ce872c6d0c17

position:41923868:1
position: 41923868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41924067:1
position: 41924067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64b7f0e8-44f9-4e46-8ee0-ce872c6d0c17
SIO_000300: 1
SIO_000628: feature:41923868-41924067:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 44016953..44017452
location: region:44016953-44017452:1
BFO_0000051: feature:44016953-44017452:1:region
SIO_000974: f3ced6a6-0be8-4b55-bf3d-91cde979bda4

position:44016953:1
position: 44016953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44017452:1
position: 44017452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f3ced6a6-0be8-4b55-bf3d-91cde979bda4
SIO_000300: 1
SIO_000628: feature:44016953-44017452:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50824723..50824922
location: region:50824723-50824922:1
BFO_0000051: feature:50824723-50824922:1:region
SIO_000974: f5eb2a65-dfe1-492f-9c70-f0cb289a3424

position:50824723:1
position: 50824723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50824922:1
position: 50824922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f5eb2a65-dfe1-492f-9c70-f0cb289a3424
SIO_000300: 1
SIO_000628: feature:50824723-50824922:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51085551..51085750
location: region:51085551-51085750:1
BFO_0000051: feature:51085551-51085750:1:region
SIO_000974: 2371eab1-04da-4736-b43f-4078682438dd

position:51085551:1
position: 51085551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51085750:1
position: 51085750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2371eab1-04da-4736-b43f-4078682438dd
SIO_000300: 1
SIO_000628: feature:51085551-51085750:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51982225..51982424
location: region:51982225-51982424:1
BFO_0000051: feature:51982225-51982424:1:region
SIO_000974: 53cb982d-af38-4b93-b5d0-fb90fb19843b

position:51982225:1
position: 51982225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51982424:1
position: 51982424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53cb982d-af38-4b93-b5d0-fb90fb19843b
SIO_000300: 1
SIO_000628: feature:51982225-51982424:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52045908..52046107
location: region:52045908-52046107:1
BFO_0000051: feature:52045908-52046107:1:region
SIO_000974: 8ba172ec-b2e3-4aab-a32e-d87881977267

position:52045908:1
position: 52045908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52046107:1
position: 52046107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ba172ec-b2e3-4aab-a32e-d87881977267
SIO_000300: 1
SIO_000628: feature:52045908-52046107:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53553178..53553377
location: region:53553178-53553377:1
BFO_0000051: feature:53553178-53553377:1:region
SIO_000974: 117ca31e-3c44-4cb9-b94a-adf41ac17756

position:53553178:1
position: 53553178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53553377:1
position: 53553377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

117ca31e-3c44-4cb9-b94a-adf41ac17756
SIO_000300: 1
SIO_000628: feature:53553178-53553377:1:region

Ocypus olens genome assembly, chromosome: 14.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 14.
sequence version: OU343060.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 54471190
topology: linear
RO_0000086: SO_0000987
location: 1..54471190
location: region:1-54471190:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54471190:1
position: 54471190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54471190:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4175130..4175329
location: region:4175130-4175329:1
BFO_0000051: feature:4175130-4175329:1:region
SIO_000974: 9efc1581-1e03-4f9c-b0d9-81b5abc52084

position:4175130:1
position: 4175130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4175329:1
position: 4175329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9efc1581-1e03-4f9c-b0d9-81b5abc52084
SIO_000300: 1
SIO_000628: feature:4175130-4175329:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4667001..4667500
location: region:4667001-4667500:1
BFO_0000051: feature:4667001-4667500:1:region
SIO_000974: 0aeb8251-40e5-4afe-8176-a71af47fc2b0

position:4667001:1
position: 4667001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4667500:1
position: 4667500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0aeb8251-40e5-4afe-8176-a71af47fc2b0
SIO_000300: 1
SIO_000628: feature:4667001-4667500:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4943576..4944075
location: region:4943576-4944075:1
BFO_0000051: feature:4943576-4944075:1:region
SIO_000974: e8e3c54b-df89-4d8b-9f77-c409bfbdb2df

position:4943576:1
position: 4943576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4944075:1
position: 4944075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8e3c54b-df89-4d8b-9f77-c409bfbdb2df
SIO_000300: 1
SIO_000628: feature:4943576-4944075:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6474731..6475230
location: region:6474731-6475230:1
BFO_0000051: feature:6474731-6475230:1:region
SIO_000974: 7844221c-8eb5-430b-99de-171f2ba8568f

position:6474731:1
position: 6474731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6475230:1
position: 6475230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7844221c-8eb5-430b-99de-171f2ba8568f
SIO_000300: 1
SIO_000628: feature:6474731-6475230:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7175717..7176216
location: region:7175717-7176216:1
BFO_0000051: feature:7175717-7176216:1:region
SIO_000974: 6445d307-0d2a-4e1d-a2d9-dc1eb34f7be8

position:7175717:1
position: 7175717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7176216:1
position: 7176216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6445d307-0d2a-4e1d-a2d9-dc1eb34f7be8
SIO_000300: 1
SIO_000628: feature:7175717-7176216:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7707471..7707970
location: region:7707471-7707970:1
BFO_0000051: feature:7707471-7707970:1:region
SIO_000974: 06f70d27-0565-49b2-8c50-6dfdd03d1351

position:7707471:1
position: 7707471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7707970:1
position: 7707970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06f70d27-0565-49b2-8c50-6dfdd03d1351
SIO_000300: 1
SIO_000628: feature:7707471-7707970:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8227191..8227390
location: region:8227191-8227390:1
BFO_0000051: feature:8227191-8227390:1:region
SIO_000974: 40339d33-ac43-4d5f-a803-51000b98f336

position:8227191:1
position: 8227191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8227390:1
position: 8227390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40339d33-ac43-4d5f-a803-51000b98f336
SIO_000300: 1
SIO_000628: feature:8227191-8227390:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8843158..8843357
location: region:8843158-8843357:1
BFO_0000051: feature:8843158-8843357:1:region
SIO_000974: 759ca9da-0e15-40c4-8d84-4bc108b866ef

position:8843158:1
position: 8843158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8843357:1
position: 8843357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

759ca9da-0e15-40c4-8d84-4bc108b866ef
SIO_000300: 1
SIO_000628: feature:8843158-8843357:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21093924..21094123
location: region:21093924-21094123:1
BFO_0000051: feature:21093924-21094123:1:region
SIO_000974: 97918c1d-a3fd-45cb-8d36-93f57a7d2385

position:21093924:1
position: 21093924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21094123:1
position: 21094123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97918c1d-a3fd-45cb-8d36-93f57a7d2385
SIO_000300: 1
SIO_000628: feature:21093924-21094123:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27933753..27933952
location: region:27933753-27933952:1
BFO_0000051: feature:27933753-27933952:1:region
SIO_000974: 025dad49-7a6c-4f06-b462-153399242272

position:27933753:1
position: 27933753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27933952:1
position: 27933952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

025dad49-7a6c-4f06-b462-153399242272
SIO_000300: 1
SIO_000628: feature:27933753-27933952:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29286586..29286785
location: region:29286586-29286785:1
BFO_0000051: feature:29286586-29286785:1:region
SIO_000974: 13beee10-2564-4c51-a196-e7d821da043b

position:29286586:1
position: 29286586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29286785:1
position: 29286785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

13beee10-2564-4c51-a196-e7d821da043b
SIO_000300: 1
SIO_000628: feature:29286586-29286785:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29977154..29977353
location: region:29977154-29977353:1
BFO_0000051: feature:29977154-29977353:1:region
SIO_000974: f0f0fd68-0264-4b8a-969d-67677a3704c7

position:29977154:1
position: 29977154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29977353:1
position: 29977353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0f0fd68-0264-4b8a-969d-67677a3704c7
SIO_000300: 1
SIO_000628: feature:29977154-29977353:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35018822..35019021
location: region:35018822-35019021:1
BFO_0000051: feature:35018822-35019021:1:region
SIO_000974: c8165a94-28c2-4f7c-a9b3-8776a79047e7

position:35018822:1
position: 35018822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35019021:1
position: 35019021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8165a94-28c2-4f7c-a9b3-8776a79047e7
SIO_000300: 1
SIO_000628: feature:35018822-35019021:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 35241377..35241876
location: region:35241377-35241876:1
BFO_0000051: feature:35241377-35241876:1:region
SIO_000974: b6b3419d-1b52-484f-99d9-fe79fa20608d

position:35241377:1
position: 35241377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35241876:1
position: 35241876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6b3419d-1b52-484f-99d9-fe79fa20608d
SIO_000300: 1
SIO_000628: feature:35241377-35241876:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35564972..35565171
location: region:35564972-35565171:1
BFO_0000051: feature:35564972-35565171:1:region
SIO_000974: f283db74-ab22-4da3-b11d-8c7f754bbbc2

position:35564972:1
position: 35564972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35565171:1
position: 35565171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f283db74-ab22-4da3-b11d-8c7f754bbbc2
SIO_000300: 1
SIO_000628: feature:35564972-35565171:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39942049..39942248
location: region:39942049-39942248:1
BFO_0000051: feature:39942049-39942248:1:region
SIO_000974: b5477938-ff92-4596-949a-42b1437dfeb7

position:39942049:1
position: 39942049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39942248:1
position: 39942248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b5477938-ff92-4596-949a-42b1437dfeb7
SIO_000300: 1
SIO_000628: feature:39942049-39942248:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 40681734..40682233
location: region:40681734-40682233:1
BFO_0000051: feature:40681734-40682233:1:region
SIO_000974: 31ade05e-ac06-409d-bc87-b140a9c08bc2

position:40681734:1
position: 40681734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40682233:1
position: 40682233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31ade05e-ac06-409d-bc87-b140a9c08bc2
SIO_000300: 1
SIO_000628: feature:40681734-40682233:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 45359118..45359617
location: region:45359118-45359617:1
BFO_0000051: feature:45359118-45359617:1:region
SIO_000974: 6bb6c59f-a54c-4598-a2f7-c79f28979f8d

position:45359118:1
position: 45359118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45359617:1
position: 45359617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:45359118-45359617:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50497615..50497814
location: region:50497615-50497814:1
BFO_0000051: feature:50497615-50497814:1:region
SIO_000974: 85a6ab71-05cd-4982-bdb1-f4563a8ed14c

position:50497615:1
position: 50497615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50497814:1
position: 50497814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

85a6ab71-05cd-4982-bdb1-f4563a8ed14c
SIO_000300: 1
SIO_000628: feature:50497615-50497814:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 51389296..51389795
location: region:51389296-51389795:1
BFO_0000051: feature:51389296-51389795:1:region
SIO_000974: d2c9d3fc-7238-462e-a1b1-25067526fd08

position:51389296:1
position: 51389296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51389795:1
position: 51389795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d2c9d3fc-7238-462e-a1b1-25067526fd08
SIO_000300: 1
SIO_000628: feature:51389296-51389795:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52793337..52793536
location: region:52793337-52793536:1
BFO_0000051: feature:52793337-52793536:1:region
SIO_000974: 7f2bd26a-6e46-42c8-b5d6-15fc857c37d4

position:52793337:1
position: 52793337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52793536:1
position: 52793536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f2bd26a-6e46-42c8-b5d6-15fc857c37d4
SIO_000300: 1
SIO_000628: feature:52793337-52793536:1:region

Ocypus olens genome assembly, chromosome: 15.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 15.
sequence version: OU343061.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 52481607
topology: linear
RO_0000086: SO_0000987
location: 1..52481607
location: region:1-52481607:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52481607:1
position: 52481607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-52481607:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 546793..546992
location: region:546793-546992:1
BFO_0000051: feature:546793-546992:1:region
SIO_000974: 95565de7-cbeb-4901-b0c3-e044950ee511

position:546793:1
position: 546793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546992:1
position: 546992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95565de7-cbeb-4901-b0c3-e044950ee511
SIO_000300: 1
SIO_000628: feature:546793-546992:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2905545..2905744
location: region:2905545-2905744:1
BFO_0000051: feature:2905545-2905744:1:region
SIO_000974: 8c3c4f5f-f2af-4f29-a8dc-2f799b3d3601

position:2905545:1
position: 2905545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2905744:1
position: 2905744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c3c4f5f-f2af-4f29-a8dc-2f799b3d3601
SIO_000300: 1
SIO_000628: feature:2905545-2905744:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4311607..4311806
location: region:4311607-4311806:1
BFO_0000051: feature:4311607-4311806:1:region
SIO_000974: bfb7fb4e-934e-4d85-806a-16bf1f12da7c

position:4311607:1
position: 4311607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4311806:1
position: 4311806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bfb7fb4e-934e-4d85-806a-16bf1f12da7c
SIO_000300: 1
SIO_000628: feature:4311607-4311806:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9072651..9072850
location: region:9072651-9072850:1
BFO_0000051: feature:9072651-9072850:1:region
SIO_000974: 5c60c3f5-5d44-43b3-a0ba-125d6bb25319

position:9072651:1
position: 9072651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9072850:1
position: 9072850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5c60c3f5-5d44-43b3-a0ba-125d6bb25319
SIO_000300: 1
SIO_000628: feature:9072651-9072850:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9307341..9307840
location: region:9307341-9307840:1
BFO_0000051: feature:9307341-9307840:1:region
SIO_000974: 86066450-ab3a-4b58-8868-5b9f0f36b696

position:9307341:1
position: 9307341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9307840:1
position: 9307840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9307341-9307840:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9546140..9546339
location: region:9546140-9546339:1
BFO_0000051: feature:9546140-9546339:1:region
SIO_000974: 3a1b2e00-7669-45ec-87dd-14c109a9dbe7

position:9546140:1
position: 9546140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9546339:1
position: 9546339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a1b2e00-7669-45ec-87dd-14c109a9dbe7
SIO_000300: 1
SIO_000628: feature:9546140-9546339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20712145..20712344
location: region:20712145-20712344:1
BFO_0000051: feature:20712145-20712344:1:region
SIO_000974: cb182117-c7ec-4d64-8a18-33092a354cca

position:20712145:1
position: 20712145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20712344:1
position: 20712344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb182117-c7ec-4d64-8a18-33092a354cca
SIO_000300: 1
SIO_000628: feature:20712145-20712344:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20879955..20880154
location: region:20879955-20880154:1
BFO_0000051: feature:20879955-20880154:1:region
SIO_000974: 3c7d8303-f7d1-4388-b0a9-07f1e8bb0efa

position:20879955:1
position: 20879955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20880154:1
position: 20880154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c7d8303-f7d1-4388-b0a9-07f1e8bb0efa
SIO_000300: 1
SIO_000628: feature:20879955-20880154:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22434081..22434280
location: region:22434081-22434280:1
BFO_0000051: feature:22434081-22434280:1:region
SIO_000974: 40bc94ed-a599-4a9a-93c1-c059e05dfbf0

position:22434081:1
position: 22434081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22434280:1
position: 22434280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40bc94ed-a599-4a9a-93c1-c059e05dfbf0
SIO_000300: 1
SIO_000628: feature:22434081-22434280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22926062..22926261
location: region:22926062-22926261:1
BFO_0000051: feature:22926062-22926261:1:region
SIO_000974: 76e1f3ee-e0a6-43e9-8199-5434cf626ee4

position:22926062:1
position: 22926062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22926261:1
position: 22926261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76e1f3ee-e0a6-43e9-8199-5434cf626ee4
SIO_000300: 1
SIO_000628: feature:22926062-22926261:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23266614..23266813
location: region:23266614-23266813:1
BFO_0000051: feature:23266614-23266813:1:region
SIO_000974: d965637d-0b7d-4a4f-9c65-ac01d1de89c2

position:23266614:1
position: 23266614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23266813:1
position: 23266813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d965637d-0b7d-4a4f-9c65-ac01d1de89c2
SIO_000300: 1
SIO_000628: feature:23266614-23266813:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23997353..23997552
location: region:23997353-23997552:1
BFO_0000051: feature:23997353-23997552:1:region
SIO_000974: 5a91f65d-e1da-4834-860a-3adbb51b81c3

position:23997353:1
position: 23997353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23997552:1
position: 23997552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5a91f65d-e1da-4834-860a-3adbb51b81c3
SIO_000300: 1
SIO_000628: feature:23997353-23997552:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24575140..24575339
location: region:24575140-24575339:1
BFO_0000051: feature:24575140-24575339:1:region
SIO_000974: 893ce908-2ce1-495f-8d30-8e8f30a5ef2e

position:24575140:1
position: 24575140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24575339:1
position: 24575339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24575140-24575339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25087086..25087285
location: region:25087086-25087285:1
BFO_0000051: feature:25087086-25087285:1:region
SIO_000974: 13edbc47-a12c-4785-957a-6ad7323cd2a1

position:25087086:1
position: 25087086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25087285:1
position: 25087285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

13edbc47-a12c-4785-957a-6ad7323cd2a1
SIO_000300: 1
SIO_000628: feature:25087086-25087285:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25389661..25389860
location: region:25389661-25389860:1
BFO_0000051: feature:25389661-25389860:1:region
SIO_000974: 815e79d1-0d90-4d48-9d44-58f69c7d87e2

position:25389661:1
position: 25389661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25389860:1
position: 25389860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

815e79d1-0d90-4d48-9d44-58f69c7d87e2
SIO_000300: 1
SIO_000628: feature:25389661-25389860:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25768219..25768418
location: region:25768219-25768418:1
BFO_0000051: feature:25768219-25768418:1:region
SIO_000974: 34c854e9-f623-4860-9f94-e4bfab90445d

position:25768219:1
position: 25768219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25768418:1
position: 25768418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34c854e9-f623-4860-9f94-e4bfab90445d
SIO_000300: 1
SIO_000628: feature:25768219-25768418:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26098241..26098440
location: region:26098241-26098440:1
BFO_0000051: feature:26098241-26098440:1:region
SIO_000974: 65dbbd50-2a6d-46b6-9595-11a78e1439a8

position:26098241:1
position: 26098241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26098440:1
position: 26098440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65dbbd50-2a6d-46b6-9595-11a78e1439a8
SIO_000300: 1
SIO_000628: feature:26098241-26098440:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39464406..39464605
location: region:39464406-39464605:1
BFO_0000051: feature:39464406-39464605:1:region
SIO_000974: a2e6da8a-d153-44de-a23d-79fcf3adcfcb

position:39464406:1
position: 39464406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39464605:1
position: 39464605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2e6da8a-d153-44de-a23d-79fcf3adcfcb
SIO_000300: 1
SIO_000628: feature:39464406-39464605:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 40543201..40543700
location: region:40543201-40543700:1
BFO_0000051: feature:40543201-40543700:1:region
SIO_000974: e0acb8e9-a484-4e0d-9e1d-8dee644d4b5d

position:40543201:1
position: 40543201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40543700:1
position: 40543700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e0acb8e9-a484-4e0d-9e1d-8dee644d4b5d
SIO_000300: 1
SIO_000628: feature:40543201-40543700:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40898668..40898867
location: region:40898668-40898867:1
BFO_0000051: feature:40898668-40898867:1:region
SIO_000974: c11e77be-c6da-42d8-8732-2c0759806873

position:40898668:1
position: 40898668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40898867:1
position: 40898867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c11e77be-c6da-42d8-8732-2c0759806873
SIO_000300: 1
SIO_000628: feature:40898668-40898867:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 41603313..41603812
location: region:41603313-41603812:1
BFO_0000051: feature:41603313-41603812:1:region
SIO_000974: af2a4e5d-70b0-4c15-aab4-c4a12b5e9202

position:41603313:1
position: 41603313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41603812:1
position: 41603812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af2a4e5d-70b0-4c15-aab4-c4a12b5e9202
SIO_000300: 1
SIO_000628: feature:41603313-41603812:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42487859..42488058
location: region:42487859-42488058:1
BFO_0000051: feature:42487859-42488058:1:region
SIO_000974: ac52743a-0510-405e-a47e-6d7658454af6

position:42487859:1
position: 42487859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42488058:1
position: 42488058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac52743a-0510-405e-a47e-6d7658454af6
SIO_000300: 1
SIO_000628: feature:42487859-42488058:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 43542628..43543127
location: region:43542628-43543127:1
BFO_0000051: feature:43542628-43543127:1:region
SIO_000974: bc6403ea-120b-402f-b920-ca6fea67364b

position:43542628:1
position: 43542628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43543127:1
position: 43543127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc6403ea-120b-402f-b920-ca6fea67364b
SIO_000300: 1
SIO_000628: feature:43542628-43543127:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 44120335..44120834
location: region:44120335-44120834:1
BFO_0000051: feature:44120335-44120834:1:region
SIO_000974: 588e54fe-7c9f-45ca-b3c2-21649a08b6fe

position:44120335:1
position: 44120335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44120834:1
position: 44120834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

588e54fe-7c9f-45ca-b3c2-21649a08b6fe
SIO_000300: 1
SIO_000628: feature:44120335-44120834:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 44458430..44458929
location: region:44458430-44458929:1
BFO_0000051: feature:44458430-44458929:1:region
SIO_000974: 9247ce5d-e097-4dca-9d61-6f35ae871879

position:44458430:1
position: 44458430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44458929:1
position: 44458929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9247ce5d-e097-4dca-9d61-6f35ae871879
SIO_000300: 1
SIO_000628: feature:44458430-44458929:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 47581132..47581631
location: region:47581132-47581631:1
BFO_0000051: feature:47581132-47581631:1:region
SIO_000974: dcd82299-214d-4a09-ac81-bd4c69d913e4

position:47581132:1
position: 47581132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47581631:1
position: 47581631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dcd82299-214d-4a09-ac81-bd4c69d913e4
SIO_000300: 1
SIO_000628: feature:47581132-47581631:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48661123..48661322
location: region:48661123-48661322:1
BFO_0000051: feature:48661123-48661322:1:region
SIO_000974: 1e92e320-d957-45ee-9250-4173c7710109

position:48661123:1
position: 48661123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48661322:1
position: 48661322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1e92e320-d957-45ee-9250-4173c7710109
SIO_000300: 1
SIO_000628: feature:48661123-48661322:1:region

Ocypus olens genome assembly, chromosome: 16.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 16.
sequence version: OU343062.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 50260824
topology: linear
RO_0000086: SO_0000987
location: 1..50260824
location: region:1-50260824:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50260824:1
position: 50260824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-50260824:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2253241..2253440
location: region:2253241-2253440:1
BFO_0000051: feature:2253241-2253440:1:region
SIO_000974: 7ecb99b1-7301-4fd0-b084-d9c7dce13131

position:2253241:1
position: 2253241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2253440:1
position: 2253440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ecb99b1-7301-4fd0-b084-d9c7dce13131
SIO_000300: 1
SIO_000628: feature:2253241-2253440:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2833612..2833811
location: region:2833612-2833811:1
BFO_0000051: feature:2833612-2833811:1:region
SIO_000974: b86ce25c-9dd4-496f-ab8f-7b9a8f1f0f6d

position:2833612:1
position: 2833612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2833811:1
position: 2833811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b86ce25c-9dd4-496f-ab8f-7b9a8f1f0f6d
SIO_000300: 1
SIO_000628: feature:2833612-2833811:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3778091..3778290
location: region:3778091-3778290:1
BFO_0000051: feature:3778091-3778290:1:region
SIO_000974: bdeab27b-5c9c-4226-a946-8b4c952557bd

position:3778091:1
position: 3778091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3778290:1
position: 3778290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bdeab27b-5c9c-4226-a946-8b4c952557bd
SIO_000300: 1
SIO_000628: feature:3778091-3778290:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4244252..4244451
location: region:4244252-4244451:1
BFO_0000051: feature:4244252-4244451:1:region
SIO_000974: f3ee5781-85d9-43ad-a69f-f355532b018f

position:4244252:1
position: 4244252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4244451:1
position: 4244451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f3ee5781-85d9-43ad-a69f-f355532b018f
SIO_000300: 1
SIO_000628: feature:4244252-4244451:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4551370..4551569
location: region:4551370-4551569:1
BFO_0000051: feature:4551370-4551569:1:region
SIO_000974: df3342eb-46cc-4358-89d9-a26af28525a2

position:4551370:1
position: 4551370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4551569:1
position: 4551569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df3342eb-46cc-4358-89d9-a26af28525a2
SIO_000300: 1
SIO_000628: feature:4551370-4551569:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5409180..5409379
location: region:5409180-5409379:1
BFO_0000051: feature:5409180-5409379:1:region
SIO_000974: 6cba4b92-ac80-435f-9385-8574e56c20ce

position:5409180:1
position: 5409180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5409379:1
position: 5409379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6cba4b92-ac80-435f-9385-8574e56c20ce
SIO_000300: 1
SIO_000628: feature:5409180-5409379:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9136642..9137141
location: region:9136642-9137141:1
BFO_0000051: feature:9136642-9137141:1:region
SIO_000974: e778f9b6-8bee-4f2a-8c54-91077786a70a

position:9136642:1
position: 9136642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9137141:1
position: 9137141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e778f9b6-8bee-4f2a-8c54-91077786a70a
SIO_000300: 1
SIO_000628: feature:9136642-9137141:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16850535..16851034
location: region:16850535-16851034:1
BFO_0000051: feature:16850535-16851034:1:region
SIO_000974: 000f7641-efd1-4b91-9092-bbab8dd72c3a

position:16850535:1
position: 16850535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16851034:1
position: 16851034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

000f7641-efd1-4b91-9092-bbab8dd72c3a
SIO_000300: 1
SIO_000628: feature:16850535-16851034:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18524196..18524395
location: region:18524196-18524395:1
BFO_0000051: feature:18524196-18524395:1:region
SIO_000974: 72a1746d-a751-4294-b82e-21e524073c41

position:18524196:1
position: 18524196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18524395:1
position: 18524395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72a1746d-a751-4294-b82e-21e524073c41
SIO_000300: 1
SIO_000628: feature:18524196-18524395:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18678831..18679030
location: region:18678831-18679030:1
BFO_0000051: feature:18678831-18679030:1:region
SIO_000974: dff7b386-a624-4e10-aed0-239bd8b1519a

position:18678831:1
position: 18678831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18679030:1
position: 18679030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dff7b386-a624-4e10-aed0-239bd8b1519a
SIO_000300: 1
SIO_000628: feature:18678831-18679030:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21488488..21488687
location: region:21488488-21488687:1
BFO_0000051: feature:21488488-21488687:1:region
SIO_000974: 5d5c9f8c-b2af-4a57-a989-994e70921441

position:21488488:1
position: 21488488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21488687:1
position: 21488687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5d5c9f8c-b2af-4a57-a989-994e70921441
SIO_000300: 1
SIO_000628: feature:21488488-21488687:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22244459..22244658
location: region:22244459-22244658:1
BFO_0000051: feature:22244459-22244658:1:region
SIO_000974: 94013885-efc5-4045-82a4-154390c55bde

position:22244459:1
position: 22244459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22244658:1
position: 22244658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94013885-efc5-4045-82a4-154390c55bde
SIO_000300: 1
SIO_000628: feature:22244459-22244658:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22810709..22810908
location: region:22810709-22810908:1
BFO_0000051: feature:22810709-22810908:1:region
SIO_000974: 7859c2b3-6527-402e-939c-c3c25add8bfe

position:22810709:1
position: 22810709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22810908:1
position: 22810908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7859c2b3-6527-402e-939c-c3c25add8bfe
SIO_000300: 1
SIO_000628: feature:22810709-22810908:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24147695..24147894
location: region:24147695-24147894:1
BFO_0000051: feature:24147695-24147894:1:region
SIO_000974: 2174d96a-9f1b-4c34-bc1c-eba6b3fe8065

position:24147695:1
position: 24147695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24147894:1
position: 24147894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2174d96a-9f1b-4c34-bc1c-eba6b3fe8065
SIO_000300: 1
SIO_000628: feature:24147695-24147894:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24694769..24694968
location: region:24694769-24694968:1
BFO_0000051: feature:24694769-24694968:1:region
SIO_000974: 50d5a919-bd5b-456b-b2a4-300c2b105b2b

position:24694769:1
position: 24694769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24694968:1
position: 24694968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50d5a919-bd5b-456b-b2a4-300c2b105b2b
SIO_000300: 1
SIO_000628: feature:24694769-24694968:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25463894..25464093
location: region:25463894-25464093:1
BFO_0000051: feature:25463894-25464093:1:region
SIO_000974: e1c83dca-4a57-4534-ac5e-9948be2c2e41

position:25463894:1
position: 25463894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25464093:1
position: 25464093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e1c83dca-4a57-4534-ac5e-9948be2c2e41
SIO_000300: 1
SIO_000628: feature:25463894-25464093:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26054313..26054512
location: region:26054313-26054512:1
BFO_0000051: feature:26054313-26054512:1:region
SIO_000974: 3327010a-c3a4-4c05-a8bd-f213fb496201

position:26054313:1
position: 26054313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26054512:1
position: 26054512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3327010a-c3a4-4c05-a8bd-f213fb496201
SIO_000300: 1
SIO_000628: feature:26054313-26054512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 28004259..28004758
location: region:28004259-28004758:1
BFO_0000051: feature:28004259-28004758:1:region
SIO_000974: c8e4b687-e7e7-4050-850b-1ec9c22278de

position:28004259:1
position: 28004259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28004758:1
position: 28004758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8e4b687-e7e7-4050-850b-1ec9c22278de
SIO_000300: 1
SIO_000628: feature:28004259-28004758:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28773665..28773864
location: region:28773665-28773864:1
BFO_0000051: feature:28773665-28773864:1:region
SIO_000974: a6a77a50-33bf-44ce-97f8-9cc333a83305

position:28773665:1
position: 28773665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28773864:1
position: 28773864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a6a77a50-33bf-44ce-97f8-9cc333a83305
SIO_000300: 1
SIO_000628: feature:28773665-28773864:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 30612487..30612986
location: region:30612487-30612986:1
BFO_0000051: feature:30612487-30612986:1:region
SIO_000974: 8093650d-9687-470e-8683-b7009bac7d44

position:30612487:1
position: 30612487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30612986:1
position: 30612986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8093650d-9687-470e-8683-b7009bac7d44
SIO_000300: 1
SIO_000628: feature:30612487-30612986:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32524018..32524217
location: region:32524018-32524217:1
BFO_0000051: feature:32524018-32524217:1:region
SIO_000974: 215bcc40-2b65-4c36-8264-42da415bb2e2

position:32524018:1
position: 32524018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32524217:1
position: 32524217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

215bcc40-2b65-4c36-8264-42da415bb2e2
SIO_000300: 1
SIO_000628: feature:32524018-32524217:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32711089..32711288
location: region:32711089-32711288:1
BFO_0000051: feature:32711089-32711288:1:region
SIO_000974: 1e7cce68-0575-44df-9eb3-ccf723994d26

position:32711089:1
position: 32711089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32711288:1
position: 32711288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1e7cce68-0575-44df-9eb3-ccf723994d26
SIO_000300: 1
SIO_000628: feature:32711089-32711288:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32964368..32964567
location: region:32964368-32964567:1
BFO_0000051: feature:32964368-32964567:1:region
SIO_000974: ae335265-b9a2-4991-a7d8-f52d10a4f576

position:32964368:1
position: 32964368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32964567:1
position: 32964567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae335265-b9a2-4991-a7d8-f52d10a4f576
SIO_000300: 1
SIO_000628: feature:32964368-32964567:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 38457797..38458296
location: region:38457797-38458296:1
BFO_0000051: feature:38457797-38458296:1:region
SIO_000974: 6a56f192-93b4-49f1-8034-68ec0f5130a6

position:38457797:1
position: 38457797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38458296:1
position: 38458296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6a56f192-93b4-49f1-8034-68ec0f5130a6
SIO_000300: 1
SIO_000628: feature:38457797-38458296:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42840028..42840227
location: region:42840028-42840227:1
BFO_0000051: feature:42840028-42840227:1:region
SIO_000974: 05981d5a-0e22-40e5-9bf7-c301a28b0d80

position:42840028:1
position: 42840028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42840227:1
position: 42840227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05981d5a-0e22-40e5-9bf7-c301a28b0d80
SIO_000300: 1
SIO_000628: feature:42840028-42840227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44103650..44103849
location: region:44103650-44103849:1
BFO_0000051: feature:44103650-44103849:1:region
SIO_000974: 6762a21d-0b57-44a5-9200-292c7bce1064

position:44103650:1
position: 44103650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44103849:1
position: 44103849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:44103650-44103849:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 45352928..45353427
location: region:45352928-45353427:1
BFO_0000051: feature:45352928-45353427:1:region
SIO_000974: 5bb30e51-fcf1-42dd-8320-4e9dbdee70c1

position:45352928:1
position: 45352928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45353427:1
position: 45353427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:45352928-45353427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46760943..46761142
location: region:46760943-46761142:1
BFO_0000051: feature:46760943-46761142:1:region
SIO_000974: b22cc5e6-87e0-464a-86ec-ab8974aafecc

position:46760943:1
position: 46760943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46761142:1
position: 46761142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b22cc5e6-87e0-464a-86ec-ab8974aafecc
SIO_000300: 1
SIO_000628: feature:46760943-46761142:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46870319..46870518
location: region:46870319-46870518:1
BFO_0000051: feature:46870319-46870518:1:region
SIO_000974: 6cdd8501-0e26-4044-bdec-b7370561a0ad

position:46870319:1
position: 46870319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46870518:1
position: 46870518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:46870319-46870518:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 47508066..47508565
location: region:47508066-47508565:1
BFO_0000051: feature:47508066-47508565:1:region
SIO_000974: bffab4a1-d264-42af-975c-e832c3245f9b

position:47508066:1
position: 47508066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47508565:1
position: 47508565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bffab4a1-d264-42af-975c-e832c3245f9b
SIO_000300: 1
SIO_000628: feature:47508066-47508565:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48195931..48196130
location: region:48195931-48196130:1
BFO_0000051: feature:48195931-48196130:1:region
SIO_000974: 0df042ab-500a-4bf9-85da-d045bc821408

position:48195931:1
position: 48195931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48196130:1
position: 48196130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0df042ab-500a-4bf9-85da-d045bc821408
SIO_000300: 1
SIO_000628: feature:48195931-48196130:1:region

Ocypus olens genome assembly, chromosome: 17.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 17.
sequence version: OU343063.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 48121331
topology: linear
RO_0000086: SO_0000987
location: 1..48121331
location: region:1-48121331:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48121331:1
position: 48121331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-48121331:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3307102..3307301
location: region:3307102-3307301:1
BFO_0000051: feature:3307102-3307301:1:region
SIO_000974: f7249221-5e89-420f-9f49-1b0b4566f433

position:3307102:1
position: 3307102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3307301:1
position: 3307301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f7249221-5e89-420f-9f49-1b0b4566f433
SIO_000300: 1
SIO_000628: feature:3307102-3307301:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3605276..3605475
location: region:3605276-3605475:1
BFO_0000051: feature:3605276-3605475:1:region
SIO_000974: 2ce746c9-d7e2-456c-ae58-5998ca928826

position:3605276:1
position: 3605276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3605475:1
position: 3605475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2ce746c9-d7e2-456c-ae58-5998ca928826
SIO_000300: 1
SIO_000628: feature:3605276-3605475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4596297..4596796
location: region:4596297-4596796:1
BFO_0000051: feature:4596297-4596796:1:region
SIO_000974: b58e0fb5-5a60-4f8e-8e81-90836171d369

position:4596297:1
position: 4596297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4596796:1
position: 4596796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b58e0fb5-5a60-4f8e-8e81-90836171d369
SIO_000300: 1
SIO_000628: feature:4596297-4596796:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5374686..5374885
location: region:5374686-5374885:1
BFO_0000051: feature:5374686-5374885:1:region
SIO_000974: a5db79b3-7679-4a29-a226-769153466157

position:5374686:1
position: 5374686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5374885:1
position: 5374885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5db79b3-7679-4a29-a226-769153466157
SIO_000300: 1
SIO_000628: feature:5374686-5374885:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5988795..5988994
location: region:5988795-5988994:1
BFO_0000051: feature:5988795-5988994:1:region
SIO_000974: fbdd177a-9e6e-46da-95f5-f45a936ab219

position:5988795:1
position: 5988795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5988994:1
position: 5988994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbdd177a-9e6e-46da-95f5-f45a936ab219
SIO_000300: 1
SIO_000628: feature:5988795-5988994:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7217833..7218332
location: region:7217833-7218332:1
BFO_0000051: feature:7217833-7218332:1:region
SIO_000974: bad1c9d5-6dd4-4242-8462-cd70a7950b63

position:7217833:1
position: 7217833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7218332:1
position: 7218332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bad1c9d5-6dd4-4242-8462-cd70a7950b63
SIO_000300: 1
SIO_000628: feature:7217833-7218332:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8052789..8052988
location: region:8052789-8052988:1
BFO_0000051: feature:8052789-8052988:1:region
SIO_000974: c0e036c5-0eae-42fd-9c77-007d1813287b

position:8052789:1
position: 8052789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8052988:1
position: 8052988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0e036c5-0eae-42fd-9c77-007d1813287b
SIO_000300: 1
SIO_000628: feature:8052789-8052988:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16095460..16095659
location: region:16095460-16095659:1
BFO_0000051: feature:16095460-16095659:1:region
SIO_000974: 269b4411-0f39-470c-b495-4b0065954ce3

position:16095460:1
position: 16095460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16095659:1
position: 16095659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

269b4411-0f39-470c-b495-4b0065954ce3
SIO_000300: 1
SIO_000628: feature:16095460-16095659:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23300372..23300571
location: region:23300372-23300571:1
BFO_0000051: feature:23300372-23300571:1:region
SIO_000974: d18146ee-829e-4b7a-9483-1596652e7004

position:23300372:1
position: 23300372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23300571:1
position: 23300571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d18146ee-829e-4b7a-9483-1596652e7004
SIO_000300: 1
SIO_000628: feature:23300372-23300571:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23913800..23913999
location: region:23913800-23913999:1
BFO_0000051: feature:23913800-23913999:1:region
SIO_000974: 3e40353f-cec0-44c6-b21b-865d88d76182

position:23913800:1
position: 23913800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23913999:1
position: 23913999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e40353f-cec0-44c6-b21b-865d88d76182
SIO_000300: 1
SIO_000628: feature:23913800-23913999:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24899760..24899959
location: region:24899760-24899959:1
BFO_0000051: feature:24899760-24899959:1:region
SIO_000974: a3298a69-079a-417b-aac6-722d44b0b447

position:24899760:1
position: 24899760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24899959:1
position: 24899959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3298a69-079a-417b-aac6-722d44b0b447
SIO_000300: 1
SIO_000628: feature:24899760-24899959:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25190701..25190900
location: region:25190701-25190900:1
BFO_0000051: feature:25190701-25190900:1:region
SIO_000974: 00d75d63-d49e-4da9-92d5-bed8c93b6203

position:25190701:1
position: 25190701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25190900:1
position: 25190900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00d75d63-d49e-4da9-92d5-bed8c93b6203
SIO_000300: 1
SIO_000628: feature:25190701-25190900:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25455674..25455873
location: region:25455674-25455873:1
BFO_0000051: feature:25455674-25455873:1:region
SIO_000974: a9055e8b-2b6b-4753-bd48-969eed8126e8

position:25455674:1
position: 25455674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25455873:1
position: 25455873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9055e8b-2b6b-4753-bd48-969eed8126e8
SIO_000300: 1
SIO_000628: feature:25455674-25455873:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31043827..31044026
location: region:31043827-31044026:1
BFO_0000051: feature:31043827-31044026:1:region
SIO_000974: 76713d8e-88c9-4a9f-b2b7-afcdd62cd74b

position:31043827:1
position: 31043827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31044026:1
position: 31044026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76713d8e-88c9-4a9f-b2b7-afcdd62cd74b
SIO_000300: 1
SIO_000628: feature:31043827-31044026:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31115313..31115512
location: region:31115313-31115512:1
BFO_0000051: feature:31115313-31115512:1:region
SIO_000974: 19a7ba31-d9ca-4d11-9da1-e07173e10e10

position:31115313:1
position: 31115313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31115512:1
position: 31115512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19a7ba31-d9ca-4d11-9da1-e07173e10e10
SIO_000300: 1
SIO_000628: feature:31115313-31115512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32454086..32454285
location: region:32454086-32454285:1
BFO_0000051: feature:32454086-32454285:1:region
SIO_000974: fdc9146f-32da-461e-a757-0ddc11ca2863

position:32454086:1
position: 32454086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32454285:1
position: 32454285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fdc9146f-32da-461e-a757-0ddc11ca2863
SIO_000300: 1
SIO_000628: feature:32454086-32454285:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 40180963..40181462
location: region:40180963-40181462:1
BFO_0000051: feature:40180963-40181462:1:region
SIO_000974: b450283d-90bd-40c2-bcf5-69619ff7847c

position:40180963:1
position: 40180963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40181462:1
position: 40181462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b450283d-90bd-40c2-bcf5-69619ff7847c
SIO_000300: 1
SIO_000628: feature:40180963-40181462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 44112556..44113055
location: region:44112556-44113055:1
BFO_0000051: feature:44112556-44113055:1:region
SIO_000974: 35a2b9a4-ee70-4959-9e3e-95f9238abedf

position:44112556:1
position: 44112556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44113055:1
position: 44113055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35a2b9a4-ee70-4959-9e3e-95f9238abedf
SIO_000300: 1
SIO_000628: feature:44112556-44113055:1:region

Ocypus olens genome assembly, chromosome: 18.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 18.
sequence version: OU343064.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 42332034
topology: linear
RO_0000086: SO_0000987
location: 1..42332034
location: region:1-42332034:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42332034:1
position: 42332034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-42332034:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 456884..457383
location: region:456884-457383:1
BFO_0000051: feature:456884-457383:1:region
SIO_000974: f9804491-9ac2-4e37-a297-34da2347ca58

position:456884:1
position: 456884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457383:1
position: 457383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9804491-9ac2-4e37-a297-34da2347ca58
SIO_000300: 1
SIO_000628: feature:456884-457383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 723568..723767
location: region:723568-723767:1
BFO_0000051: feature:723568-723767:1:region
SIO_000974: 82d044a1-87c1-450a-b875-4aad195a34ec

position:723568:1
position: 723568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:723767:1
position: 723767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82d044a1-87c1-450a-b875-4aad195a34ec
SIO_000300: 1
SIO_000628: feature:723568-723767:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8933983..8934482
location: region:8933983-8934482:1
BFO_0000051: feature:8933983-8934482:1:region
SIO_000974: 7ba9c93e-2dbc-428e-8614-7260e12420d7

position:8933983:1
position: 8933983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8934482:1
position: 8934482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ba9c93e-2dbc-428e-8614-7260e12420d7
SIO_000300: 1
SIO_000628: feature:8933983-8934482:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9341439..9341938
location: region:9341439-9341938:1
BFO_0000051: feature:9341439-9341938:1:region
SIO_000974: 31a2feaa-2718-41fc-9d1e-70b81b5db35d

position:9341439:1
position: 9341439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9341938:1
position: 9341938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31a2feaa-2718-41fc-9d1e-70b81b5db35d
SIO_000300: 1
SIO_000628: feature:9341439-9341938:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10059063..10059562
location: region:10059063-10059562:1
BFO_0000051: feature:10059063-10059562:1:region
SIO_000974: 39ff9072-11ba-4107-ac55-f64018d29e29

position:10059063:1
position: 10059063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10059562:1
position: 10059562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

39ff9072-11ba-4107-ac55-f64018d29e29
SIO_000300: 1
SIO_000628: feature:10059063-10059562:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 12423390..12423889
location: region:12423390-12423889:1
BFO_0000051: feature:12423390-12423889:1:region
SIO_000974: 05d7709a-d23f-457e-a8d9-9b9c612e7627

position:12423390:1
position: 12423390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12423889:1
position: 12423889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05d7709a-d23f-457e-a8d9-9b9c612e7627
SIO_000300: 1
SIO_000628: feature:12423390-12423889:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13195316..13195515
location: region:13195316-13195515:1
BFO_0000051: feature:13195316-13195515:1:region
SIO_000974: 7893f215-0689-4423-997b-2175a0d9f13b

position:13195316:1
position: 13195316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13195515:1
position: 13195515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7893f215-0689-4423-997b-2175a0d9f13b
SIO_000300: 1
SIO_000628: feature:13195316-13195515:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13851634..13851833
location: region:13851634-13851833:1
BFO_0000051: feature:13851634-13851833:1:region
SIO_000974: f40ce719-ffac-495f-82d7-1244a3e014e6

position:13851634:1
position: 13851634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13851833:1
position: 13851833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f40ce719-ffac-495f-82d7-1244a3e014e6
SIO_000300: 1
SIO_000628: feature:13851634-13851833:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14701825..14702024
location: region:14701825-14702024:1
BFO_0000051: feature:14701825-14702024:1:region
SIO_000974: 68b2bd7b-73e2-493c-b578-1e95f6310a73

position:14701825:1
position: 14701825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14702024:1
position: 14702024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

68b2bd7b-73e2-493c-b578-1e95f6310a73
SIO_000300: 1
SIO_000628: feature:14701825-14702024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14852833..14853032
location: region:14852833-14853032:1
BFO_0000051: feature:14852833-14853032:1:region
SIO_000974: 47df17ac-cc40-40ae-9572-7d32cb0166bd

position:14852833:1
position: 14852833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14853032:1
position: 14853032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

47df17ac-cc40-40ae-9572-7d32cb0166bd
SIO_000300: 1
SIO_000628: feature:14852833-14853032:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15450635..15450834
location: region:15450635-15450834:1
BFO_0000051: feature:15450635-15450834:1:region
SIO_000974: 3edbbffd-65e9-424c-bbcb-119e39d1fbde

position:15450635:1
position: 15450635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15450834:1
position: 15450834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15450635-15450834:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15647137..15647336
location: region:15647137-15647336:1
BFO_0000051: feature:15647137-15647336:1:region
SIO_000974: dabe623f-2b7f-456b-ae01-b7d9a3680f7b

position:15647137:1
position: 15647137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15647336:1
position: 15647336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dabe623f-2b7f-456b-ae01-b7d9a3680f7b
SIO_000300: 1
SIO_000628: feature:15647137-15647336:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16160931..16161130
location: region:16160931-16161130:1
BFO_0000051: feature:16160931-16161130:1:region
SIO_000974: 1d942153-b4a9-41d1-8809-8af19cac6902

position:16160931:1
position: 16160931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16161130:1
position: 16161130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d942153-b4a9-41d1-8809-8af19cac6902
SIO_000300: 1
SIO_000628: feature:16160931-16161130:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17325990..17326189
location: region:17325990-17326189:1
BFO_0000051: feature:17325990-17326189:1:region
SIO_000974: 34377055-7337-46c1-9fb6-cf5f3dec2ab5

position:17325990:1
position: 17325990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17326189:1
position: 17326189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34377055-7337-46c1-9fb6-cf5f3dec2ab5
SIO_000300: 1
SIO_000628: feature:17325990-17326189:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17439515..17439714
location: region:17439515-17439714:1
BFO_0000051: feature:17439515-17439714:1:region
SIO_000974: 8c25de74-6617-4ba6-9801-1e870d7fd58c

position:17439515:1
position: 17439515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17439714:1
position: 17439714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c25de74-6617-4ba6-9801-1e870d7fd58c
SIO_000300: 1
SIO_000628: feature:17439515-17439714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18790504..18790703
location: region:18790504-18790703:1
BFO_0000051: feature:18790504-18790703:1:region
SIO_000974: 80f85294-18c4-4eae-9283-e94bb340d1cf

position:18790504:1
position: 18790504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18790703:1
position: 18790703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80f85294-18c4-4eae-9283-e94bb340d1cf
SIO_000300: 1
SIO_000628: feature:18790504-18790703:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18995471..18995670
location: region:18995471-18995670:1
BFO_0000051: feature:18995471-18995670:1:region
SIO_000974: dda55daf-e006-4b86-bd90-db42e4c95472

position:18995471:1
position: 18995471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18995670:1
position: 18995670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:18995471-18995670:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22286276..22286475
location: region:22286276-22286475:1
BFO_0000051: feature:22286276-22286475:1:region
SIO_000974: 5f8e3e45-6f53-4e09-b085-9d51e15c7fd3

position:22286276:1
position: 22286276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22286475:1
position: 22286475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f8e3e45-6f53-4e09-b085-9d51e15c7fd3
SIO_000300: 1
SIO_000628: feature:22286276-22286475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22597491..22597690
location: region:22597491-22597690:1
BFO_0000051: feature:22597491-22597690:1:region
SIO_000974: f914175c-604d-437b-9ba1-aa312d97c021

position:22597491:1
position: 22597491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22597690:1
position: 22597690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f914175c-604d-437b-9ba1-aa312d97c021
SIO_000300: 1
SIO_000628: feature:22597491-22597690:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25034501..25034700
location: region:25034501-25034700:1
BFO_0000051: feature:25034501-25034700:1:region
SIO_000974: 2bb45066-af95-4a3f-90b6-012fd01dd5a0

position:25034501:1
position: 25034501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25034700:1
position: 25034700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25034501-25034700:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25530282..25530481
location: region:25530282-25530481:1
BFO_0000051: feature:25530282-25530481:1:region
SIO_000974: 7f3102f2-6509-44e2-ad16-44753f564ba7

position:25530282:1
position: 25530282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25530481:1
position: 25530481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f3102f2-6509-44e2-ad16-44753f564ba7
SIO_000300: 1
SIO_000628: feature:25530282-25530481:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28928234..28928433
location: region:28928234-28928433:1
BFO_0000051: feature:28928234-28928433:1:region
SIO_000974: cdde9e1c-d9c7-4c0c-8e00-6ac0184bab0d

position:28928234:1
position: 28928234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28928433:1
position: 28928433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cdde9e1c-d9c7-4c0c-8e00-6ac0184bab0d
SIO_000300: 1
SIO_000628: feature:28928234-28928433:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35720524..35720723
location: region:35720524-35720723:1
BFO_0000051: feature:35720524-35720723:1:region
SIO_000974: 73b424e5-f65b-49ed-8163-20574bde5c96

position:35720524:1
position: 35720524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35720723:1
position: 35720723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73b424e5-f65b-49ed-8163-20574bde5c96
SIO_000300: 1
SIO_000628: feature:35720524-35720723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36699303..36699502
location: region:36699303-36699502:1
BFO_0000051: feature:36699303-36699502:1:region
SIO_000974: 7195bd0b-6b64-4dbb-8534-6aab724965be

position:36699303:1
position: 36699303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36699502:1
position: 36699502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:36699303-36699502:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37464472..37464671
location: region:37464472-37464671:1
BFO_0000051: feature:37464472-37464671:1:region
SIO_000974: 7dbca764-144c-4fa6-a9b5-4241831ac528

position:37464472:1
position: 37464472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37464671:1
position: 37464671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7dbca764-144c-4fa6-a9b5-4241831ac528
SIO_000300: 1
SIO_000628: feature:37464472-37464671:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37742100..37742299
location: region:37742100-37742299:1
BFO_0000051: feature:37742100-37742299:1:region
SIO_000974: 736600dc-6f88-4489-8568-1add3719f491

position:37742100:1
position: 37742100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37742299:1
position: 37742299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

736600dc-6f88-4489-8568-1add3719f491
SIO_000300: 1
SIO_000628: feature:37742100-37742299:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38411465..38411664
location: region:38411465-38411664:1
BFO_0000051: feature:38411465-38411664:1:region
SIO_000974: 412b2dc6-2e0f-466b-bde9-a018a1e45ca7

position:38411465:1
position: 38411465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38411664:1
position: 38411664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

412b2dc6-2e0f-466b-bde9-a018a1e45ca7
SIO_000300: 1
SIO_000628: feature:38411465-38411664:1:region

Ocypus olens genome assembly, chromosome: 19.
type: Entry
definition: Ocypus olens genome assembly, chromosome: 19.
sequence version: OU343065.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 41703288
topology: linear
RO_0000086: SO_0000987
location: 1..41703288
location: region:1-41703288:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41703288:1
position: 41703288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-41703288:1:source
BFO_0000050: sequence
organism: Ocypus olens
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 108664..108863
location: region:108664-108863:1
BFO_0000051: feature:108664-108863:1:region
SIO_000974: e9f1d0f2-1be2-4c7f-8d99-f46a2a9ca70e

position:108664:1
position: 108664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108863:1
position: 108863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9f1d0f2-1be2-4c7f-8d99-f46a2a9ca70e
SIO_000300: 1
SIO_000628: feature:108664-108863:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1381425..1381924
location: region:1381425-1381924:1
BFO_0000051: feature:1381425-1381924:1:region
SIO_000974: e1033242-029b-4fe6-a495-d10608fae8a1

position:1381425:1
position: 1381425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1381924:1
position: 1381924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e1033242-029b-4fe6-a495-d10608fae8a1
SIO_000300: 1
SIO_000628: feature:1381425-1381924:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2802143..2802642
location: region:2802143-2802642:1
BFO_0000051: feature:2802143-2802642:1:region
SIO_000974: 80435103-8644-4b30-b633-a20c26237285

position:2802143:1
position: 2802143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2802642:1
position: 2802642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80435103-8644-4b30-b633-a20c26237285
SIO_000300: 1
SIO_000628: feature:2802143-2802642:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4162948..4163447
location: region:4162948-4163447:1
BFO_0000051: feature:4162948-4163447:1:region
SIO_000974: fdc474e6-c7f0-4124-82db-eb0e53efb4ba

position:4162948:1
position: 4162948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4163447:1
position: 4163447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fdc474e6-c7f0-4124-82db-eb0e53efb4ba
SIO_000300: 1
SIO_000628: feature:4162948-4163447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4813875..4814374
location: region:4813875-4814374:1
BFO_0000051: feature:4813875-4814374:1:region
SIO_000974: 35270b41-7cf4-426c-9ecc-7bc92741baa5

position:4813875:1
position: 4813875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4814374:1
position: 4814374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35270b41-7cf4-426c-9ecc-7bc92741baa5
SIO_000300: 1
SIO_000628: feature:4813875-4814374:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5382193..5382392
location: region:5382193-5382392:1
BFO_0000051: feature:5382193-5382392:1:region
SIO_000974: 9313320a-5976-4e64-a2cb-565b3d6455ed

position:5382193:1
position: 5382193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5382392:1
position: 5382392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5382193-5382392:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5608120..5608319
location: region:5608120-5608319:1
BFO_0000051: feature:5608120-5608319:1:region
SIO_000974: 36f6d9dd-2fc4-46b2-a486-2992d2f7ce35

position:5608120:1
position: 5608120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5608319:1
position: 5608319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36f6d9dd-2fc4-46b2-a486-2992d2f7ce35
SIO_000300: 1
SIO_000628: feature:5608120-5608319:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6223263..6223462
location: region:6223263-6223462:1
BFO_0000051: feature:6223263-6223462:1:region
SIO_000974: 058d807a-66a6-46f6-a009-113e733f6a62

position:6223263:1
position: 6223263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6223462:1
position: 6223462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

058d807a-66a6-46f6-a009-113e733f6a62
SIO_000300: 1
SIO_000628: feature:6223263-6223462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6758778..6758977
location: region:6758778-6758977:1
BFO_0000051: feature:6758778-6758977:1:region
SIO_000974: a572c622-a895-45e4-88e0-58b3462dd832

position:6758778:1
position: 6758778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6758977:1
position: 6758977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a572c622-a895-45e4-88e0-58b3462dd832
SIO_000300: 1
SIO_000628: feature:6758778-6758977:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6866842..6867041
location: region:6866842-6867041:1
BFO_0000051: feature:6866842-6867041:1:region
SIO_000974: f6f28c99-bc6d-4768-b8a6-c3f2afee6fe8

position:6866842:1
position: 6866842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6867041:1
position: 6867041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6f28c99-bc6d-4768-b8a6-c3f2afee6fe8
SIO_000300: 1
SIO_000628: feature:6866842-6867041:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7239513..7239712
location: region:7239513-7239712:1
BFO_0000051: feature:7239513-7239712:1:region
SIO_000974: 2f74359d-dc3f-404d-bb21-a1adadd606f2

position:7239513:1
position: 7239513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7239712:1
position: 7239712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7239513-7239712:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7290295..7290494
location: region:7290295-7290494:1
BFO_0000051: feature:7290295-7290494:1:region
SIO_000974: 0074f184-d03e-49e5-964f-39c1ddbc8e0d

position:7290295:1
position: 7290295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7290494:1
position: 7290494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0074f184-d03e-49e5-964f-39c1ddbc8e0d
SIO_000300: 1
SIO_000628: feature:7290295-7290494:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9124858..9125057
location: region:9124858-9125057:1
BFO_0000051: feature:9124858-9125057:1:region
SIO_000974: 92671c17-7a88-4bb3-b2d8-decfc023ffe7

position:9124858:1
position: 9124858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9125057:1
position: 9125057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9124858-9125057:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10509761..10509960
location: region:10509761-10509960:1
BFO_0000051: feature:10509761-10509960:1:region
SIO_000974: b3711337-5e26-44de-8cd5-2068f0097371

position:10509761:1
position: 10509761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10509960:1
position: 10509960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b3711337-5e26-44de-8cd5-2068f0097371
SIO_000300: 1
SIO_000628: feature:10509761-10509960:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11789828..11790027
location: region:11789828-11790027:1
BFO_0000051: feature:11789828-11790027:1:region
SIO_000974: 3d5f26ec-a311-4f2c-aa80-e39719779f4a

position:11789828:1
position: 11789828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11790027:1
position: 11790027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d5f26ec-a311-4f2c-aa80-e39719779f4a
SIO_000300: 1
SIO_000628: feature:11789828-11790027:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12059811..12060010
location: region:12059811-12060010:1
BFO_0000051: feature:12059811-12060010:1:region
SIO_000974: 6c41941e-7429-4940-b343-ebc5d4b91a5f

position:12059811:1
position: 12059811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12060010:1
position: 12060010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c41941e-7429-4940-b343-ebc5d4b91a5f
SIO_000300: 1
SIO_000628: feature:12059811-12060010:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12722519..12722718
location: region:12722519-12722718:1
BFO_0000051: feature:12722519-12722718:1:region
SIO_000974: e4929f8f-d29c-4986-bb8e-99b300407f45

position:12722519:1
position: 12722519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12722718:1
position: 12722718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4929f8f-d29c-4986-bb8e-99b300407f45
SIO_000300: 1
SIO_000628: feature:12722519-12722718:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13476384..13476583
location: region:13476384-13476583:1
BFO_0000051: feature:13476384-13476583:1:region
SIO_000974: c8160956-41c4-4706-83a9-de7a99eb161a

position:13476384:1
position: 13476384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13476583:1
position: 13476583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8160956-41c4-4706-83a9-de7a99eb161a
SIO_000300: 1
SIO_000628: feature:13476384-13476583:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13797383..13797582
location: region:13797383-13797582:1
BFO_0000051: feature:13797383-13797582:1:region
SIO_000974: 45e3c5cb-0614-4874-bee0-6017445681e3

position:13797383:1
position: 13797383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13797582:1
position: 13797582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45e3c5cb-0614-4874-bee0-6017445681e3
SIO_000300: 1
SIO_000628: feature:13797383-13797582:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14098796..14098995
location: region:14098796-14098995:1
BFO_0000051: feature:14098796-14098995:1:region
SIO_000974: 4c3cf954-b4e8-4ac7-a538-ec63fe0af70b

position:14098796:1
position: 14098796
reference: sequence
type: ForwardStrandPosition
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position:14098995:1
position: 14098995
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:14098796-14098995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15250254..15250453
location: region:15250254-15250453:1
BFO_0000051: feature:15250254-15250453:1:region
SIO_000974: e0333783-943a-4b04-975f-44ef9ef8fc1a

position:15250254:1
position: 15250254
reference: sequence
type: ForwardStrandPosition
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position:15250453:1
position: 15250453
reference: sequence
type: ForwardStrandPosition
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e0333783-943a-4b04-975f-44ef9ef8fc1a
SIO_000300: 1
SIO_000628: feature:15250254-15250453:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15672228..15672427
location: region:15672228-15672427:1
BFO_0000051: feature:15672228-15672427:1:region
SIO_000974: 9ab89dc8-ab67-4766-b43d-b8444a3d2d2f

position:15672228:1
position: 15672228
reference: sequence
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position:15672427:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:15672228-15672427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:16033415-16033614:1
BFO_0000051: feature:16033415-16033614:1:region
SIO_000974: 46cd30b4-52dd-40b8-b8f6-061945dc218e

position:16033415:1
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reference: sequence
type: ForwardStrandPosition
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position:16033614:1
position: 16033614
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:16033415-16033614:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18003018-18003217:1
BFO_0000051: feature:18003018-18003217:1:region
SIO_000974: ce7a10d9-abde-4a61-b06d-f515029d030a

position:18003018:1
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reference: sequence
type: ForwardStrandPosition
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:18003018-18003217:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 18656054..18656553
location: region:18656054-18656553:1
BFO_0000051: feature:18656054-18656553:1:region
SIO_000974: 84d80d37-8b4d-4730-981b-2ac58d2e70f3

position:18656054:1
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reference: sequence
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position:18656553:1
position: 18656553
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:18656054-18656553:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:22483057-22483556:1
BFO_0000051: feature:22483057-22483556:1:region
SIO_000974: dcde089e-6d3f-4a9a-8849-d1dde2c0ee63

position:22483057:1
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reference: sequence
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position:22483556:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:22483057-22483556:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:24462262-24462761:1
BFO_0000051: feature:24462262-24462761:1:region
SIO_000974: 66ea117e-ff94-4d4e-a093-c5da59312aff

position:24462262:1
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reference: sequence
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position:24462761:1
position: 24462761
reference: sequence
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SIO_000300: 1
SIO_000628: feature:24462262-24462761:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:26018935-26019434:1
BFO_0000051: feature:26018935-26019434:1:region
SIO_000974: 7ffc4794-e6b2-408c-acad-00205e87e996

position:26018935:1
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reference: sequence
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position:26019434:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:26018935-26019434:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:29959108-29959307:1
BFO_0000051: feature:29959108-29959307:1:region
SIO_000974: 0596753c-b9df-45c9-9dd2-56a4d9260360

position:29959108:1
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reference: sequence
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:29959108-29959307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:31368145-31368344:1
BFO_0000051: feature:31368145-31368344:1:region
SIO_000974: 372cf1a4-0670-4fe7-9554-785fd2f9d517

position:31368145:1
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reference: sequence
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position:31368344:1
position: 31368344
reference: sequence
type: ForwardStrandPosition
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372cf1a4-0670-4fe7-9554-785fd2f9d517
SIO_000300: 1
SIO_000628: feature:31368145-31368344:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36493559..36493758
location: region:36493559-36493758:1
BFO_0000051: feature:36493559-36493758:1:region
SIO_000974: 18a6e8eb-129a-44a0-b4b4-4f2b0132886c

position:36493559:1
position: 36493559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36493758:1
position: 36493758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18a6e8eb-129a-44a0-b4b4-4f2b0132886c
SIO_000300: 1
SIO_000628: feature:36493559-36493758:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36659359..36659558
location: region:36659359-36659558:1
BFO_0000051: feature:36659359-36659558:1:region
SIO_000974: 0c7d10ae-337e-46c3-aae4-b465b07c895d

position:36659359:1
position: 36659359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36659558:1
position: 36659558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c7d10ae-337e-46c3-aae4-b465b07c895d
SIO_000300: 1
SIO_000628: feature:36659359-36659558:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38093207..38093406
location: region:38093207-38093406:1
BFO_0000051: feature:38093207-38093406:1:region
SIO_000974: 497a0f98-6329-4875-b369-f5149032f26f

position:38093207:1
position: 38093207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38093406:1
position: 38093406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

497a0f98-6329-4875-b369-f5149032f26f
SIO_000300: 1
SIO_000628: feature:38093207-38093406:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 38747982..38748481
location: region:38747982-38748481:1
BFO_0000051: feature:38747982-38748481:1:region
SIO_000974: 2c0d6a86-ec85-47df-b061-5457057963c9

position:38747982:1
position: 38747982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38748481:1
position: 38748481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c0d6a86-ec85-47df-b061-5457057963c9
SIO_000300: 1
SIO_000628: feature:38747982-38748481:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 662956
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39121533..39121732
location: region:39121533-39121732:1
BFO_0000051: feature:39121533-39121732:1:region
SIO_000974: bed8724d-64e7-4167-862b-f7dadfe35f6c

position:39121533:1
position: 39121533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39121732:1
position: 39121732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bed8724d-64e7-4167-862b-f7dadfe35f6c
SIO_000300: 1
SIO_000628: feature:39121533-39121732:1:region

Ocypus olens genome assembly, organelle: mitochondrion.
type: Entry
definition: Ocypus olens genome assembly, organelle: mitochondrion.
sequence version: OU343066.2
sequence date: 2022-10-12
sequence: sequence
division: INV
source: mitochondrion Ocypus olens
organism: Ocypus olens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus.
reference: 1
reference: 2
comment: The assembly icOcyOlen1.2 is based on 40x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds in the centromeric regions is less certain\nthan in\nthe rest of the assembly.

sequence
subclass of: SO_0000001
sequence length: 20223
topology: linear
RO_0000086: SO_0000987
location: 1..20223
location: region:1-20223:1
RO_0002162: 662956

1
journal: Submitted (21-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20223:1
position: 20223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20223:1:source
BFO_0000050: sequence
organism: Ocypus olens
organelle: mitochondrion
mol type: genomic DNA

Bibio marci genome assembly, chromosome: 1.
type: Entry
definition: Bibio marci genome assembly, chromosome: 1.
sequence version: OU343114.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 97962292
topology: linear
RO_0000086: SO_0000987
location: 1..97962292
location: region:1-97962292:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97962292:1
position: 97962292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-97962292:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: 1
mol type: genomic DNA

189979
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53051594..53051793
location: region:53051594-53051793:1
BFO_0000051: feature:53051594-53051793:1:region
SIO_000974: 33dd9daa-b66a-49aa-910b-19b195fcd716

position:53051594:1
position: 53051594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53051793:1
position: 53051793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

33dd9daa-b66a-49aa-910b-19b195fcd716
SIO_000300: 1
SIO_000628: feature:53051594-53051793:1:region

Bibio marci genome assembly, chromosome: 2.
type: Entry
definition: Bibio marci genome assembly, chromosome: 2.
sequence version: OU343115.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 71598514
topology: linear
RO_0000086: SO_0000987
location: 1..71598514
location: region:1-71598514:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71598514:1
position: 71598514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-71598514:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 52140443..52140942
location: region:52140443-52140942:1
BFO_0000051: feature:52140443-52140942:1:region
SIO_000974: 64666d9f-1d97-40ad-ac26-4fbeb0d7793b

position:52140443:1
position: 52140443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52140942:1
position: 52140942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64666d9f-1d97-40ad-ac26-4fbeb0d7793b
SIO_000300: 1
SIO_000628: feature:52140443-52140942:1:region

Bibio marci genome assembly, chromosome: 3.
type: Entry
definition: Bibio marci genome assembly, chromosome: 3.
sequence version: OU343116.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 54570542
topology: linear
RO_0000086: SO_0000987
location: 1..54570542
location: region:1-54570542:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54570542:1
position: 54570542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54570542:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10114170..10114669
location: region:10114170-10114669:1
BFO_0000051: feature:10114170-10114669:1:region
SIO_000974: dcdc6ce8-aa47-41c9-8a10-4433f221216d

position:10114170:1
position: 10114170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10114669:1
position: 10114669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dcdc6ce8-aa47-41c9-8a10-4433f221216d
SIO_000300: 1
SIO_000628: feature:10114170-10114669:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 31103664..31104163
location: region:31103664-31104163:1
BFO_0000051: feature:31103664-31104163:1:region
SIO_000974: 36e42f00-86ef-4596-8341-42282a171672

position:31103664:1
position: 31103664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31104163:1
position: 31104163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36e42f00-86ef-4596-8341-42282a171672
SIO_000300: 1
SIO_000628: feature:31103664-31104163:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 37138794..37139293
location: region:37138794-37139293:1
BFO_0000051: feature:37138794-37139293:1:region
SIO_000974: 68d4de78-ac90-4704-b11b-cd2fffa80cc5

position:37138794:1
position: 37138794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37139293:1
position: 37139293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

68d4de78-ac90-4704-b11b-cd2fffa80cc5
SIO_000300: 1
SIO_000628: feature:37138794-37139293:1:region

Bibio marci genome assembly, chromosome: 4.
type: Entry
definition: Bibio marci genome assembly, chromosome: 4.
sequence version: OU343117.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 49479901
topology: linear
RO_0000086: SO_0000987
location: 1..49479901
location: region:1-49479901:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49479901:1
position: 49479901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-49479901:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 13324351..13324850
location: region:13324351-13324850:1
BFO_0000051: feature:13324351-13324850:1:region
SIO_000974: db89d233-e242-49eb-9ec7-0dffecd58c4f

position:13324351:1
position: 13324351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13324850:1
position: 13324850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db89d233-e242-49eb-9ec7-0dffecd58c4f
SIO_000300: 1
SIO_000628: feature:13324351-13324850:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20466855..20467054
location: region:20466855-20467054:1
BFO_0000051: feature:20466855-20467054:1:region
SIO_000974: 805e7439-c444-43a0-9baf-df5de940b3c4

position:20466855:1
position: 20466855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20467054:1
position: 20467054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

805e7439-c444-43a0-9baf-df5de940b3c4
SIO_000300: 1
SIO_000628: feature:20466855-20467054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21400631..21400830
location: region:21400631-21400830:1
BFO_0000051: feature:21400631-21400830:1:region
SIO_000974: f195f418-c921-41c1-9a9a-76afdaca3bb6

position:21400631:1
position: 21400631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21400830:1
position: 21400830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f195f418-c921-41c1-9a9a-76afdaca3bb6
SIO_000300: 1
SIO_000628: feature:21400631-21400830:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28701739..28701938
location: region:28701739-28701938:1
BFO_0000051: feature:28701739-28701938:1:region
SIO_000974: 60906524-9d3a-4c3e-aaf0-2adbfaf969de

position:28701739:1
position: 28701739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28701938:1
position: 28701938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60906524-9d3a-4c3e-aaf0-2adbfaf969de
SIO_000300: 1
SIO_000628: feature:28701739-28701938:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30178194..30178393
location: region:30178194-30178393:1
BFO_0000051: feature:30178194-30178393:1:region
SIO_000974: dccbf9de-c799-47df-b030-40b12e631e07

position:30178194:1
position: 30178194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30178393:1
position: 30178393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dccbf9de-c799-47df-b030-40b12e631e07
SIO_000300: 1
SIO_000628: feature:30178194-30178393:1:region

Bibio marci genome assembly, chromosome: 5.
type: Entry
definition: Bibio marci genome assembly, chromosome: 5.
sequence version: OU343118.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 45408480
topology: linear
RO_0000086: SO_0000987
location: 1..45408480
location: region:1-45408480:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45408480:1
position: 45408480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45408480:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: 5
mol type: genomic DNA

Bibio marci genome assembly, chromosome: X.
type: Entry
definition: Bibio marci genome assembly, chromosome: X.
sequence version: OU343119.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 20989734
topology: linear
RO_0000086: SO_0000987
location: 1..20989734
location: region:1-20989734:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20989734:1
position: 20989734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20989734:1:source
BFO_0000050: sequence
organism: Bibio marci
chromosome: X
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 164479..164678
location: region:164479-164678:1
BFO_0000051: feature:164479-164678:1:region
SIO_000974: 954152a1-f7ce-453e-8785-ab2ce20ea73c

position:164479:1
position: 164479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164678:1
position: 164678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

954152a1-f7ce-453e-8785-ab2ce20ea73c
SIO_000300: 1
SIO_000628: feature:164479-164678:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 442133..442332
location: region:442133-442332:1
BFO_0000051: feature:442133-442332:1:region
SIO_000974: 26683e1e-290a-4cb3-ac00-f309c152b867

position:442133:1
position: 442133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442332:1
position: 442332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26683e1e-290a-4cb3-ac00-f309c152b867
SIO_000300: 1
SIO_000628: feature:442133-442332:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2129402..2129901
location: region:2129402-2129901:1
BFO_0000051: feature:2129402-2129901:1:region
SIO_000974: ac61004f-e3bf-48cc-badb-b4e0ada782b4

position:2129402:1
position: 2129402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2129901:1
position: 2129901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac61004f-e3bf-48cc-badb-b4e0ada782b4
SIO_000300: 1
SIO_000628: feature:2129402-2129901:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4315533..4315732
location: region:4315533-4315732:1
BFO_0000051: feature:4315533-4315732:1:region
SIO_000974: fe910a21-69b7-4b8e-9a7f-fbd6ac85968e

position:4315533:1
position: 4315533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4315732:1
position: 4315732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe910a21-69b7-4b8e-9a7f-fbd6ac85968e
SIO_000300: 1
SIO_000628: feature:4315533-4315732:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5415946..5416145
location: region:5415946-5416145:1
BFO_0000051: feature:5415946-5416145:1:region
SIO_000974: c76586d2-835f-4eef-bc21-0aed410df358

position:5415946:1
position: 5415946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5416145:1
position: 5416145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c76586d2-835f-4eef-bc21-0aed410df358
SIO_000300: 1
SIO_000628: feature:5415946-5416145:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12527759..12527958
location: region:12527759-12527958:1
BFO_0000051: feature:12527759-12527958:1:region
SIO_000974: 9985f58e-600f-4804-be78-68528c1eeb8d

position:12527759:1
position: 12527759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12527958:1
position: 12527958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9985f58e-600f-4804-be78-68528c1eeb8d
SIO_000300: 1
SIO_000628: feature:12527759-12527958:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19789334..19789533
location: region:19789334-19789533:1
BFO_0000051: feature:19789334-19789533:1:region
SIO_000974: 4e566ba7-6058-4376-91f6-d6e91fd52e68

position:19789334:1
position: 19789334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19789533:1
position: 19789533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e566ba7-6058-4376-91f6-d6e91fd52e68
SIO_000300: 1
SIO_000628: feature:19789334-19789533:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 189979
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 19951188..19951687
location: region:19951188-19951687:1
BFO_0000051: feature:19951188-19951687:1:region
SIO_000974: 327983a0-4e83-4912-b58f-b8d337f15ed0

position:19951188:1
position: 19951188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19951687:1
position: 19951687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

327983a0-4e83-4912-b58f-b8d337f15ed0
SIO_000300: 1
SIO_000628: feature:19951188-19951687:1:region

Bibio marci genome assembly, organelle: mitochondrion.
type: Entry
definition: Bibio marci genome assembly, organelle: mitochondrion.
sequence version: OU343120.2
sequence date: 2022-10-12
sequence: sequence
division: INV
source: mitochondrion Bibio marci (St. Mark's fly)
organism: Bibio marci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio.
reference: 1
reference: 2
comment: The assembly idBibMarc1.2 is based on 53x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using gEVAL. Chromosome-scale\nscaffolds\nconfirmed by the Hi-C data have been named in order of size.\nUnknown sex\nchromosome system, no Y found. X assembly has good contiguity and\ngood HiC\nlinking across scaffold gaps.

sequence
subclass of: SO_0000001
sequence length: 16014
topology: linear
RO_0000086: SO_0000987
location: 1..16014
location: region:1-16014:1
RO_0002162: 189979

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16014:1
position: 16014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16014:1:source
BFO_0000050: sequence
organism: Bibio marci
organelle: mitochondrion
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: Z.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: Z.
sequence version: OU343121.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26789203
topology: linear
RO_0000086: SO_0000987
location: 1..26789203
location: region:1-26789203:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26789203:1
position: 26789203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26789203:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: Z
mol type: genomic DNA

987877
type: Taxonomy
SIO_000068: taxonomy

Amphipyra berbera genome assembly, chromosome: 1.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 1.
sequence version: OU343122.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23512349
topology: linear
RO_0000086: SO_0000987
location: 1..23512349
location: region:1-23512349:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23512349:1
position: 23512349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23512349:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 1
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 2.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 2.
sequence version: OU343123.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22834236
topology: linear
RO_0000086: SO_0000987
location: 1..22834236
location: region:1-22834236:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22834236:1
position: 22834236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22834236:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987877
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18520346..18520545
location: region:18520346-18520545:1
BFO_0000051: feature:18520346-18520545:1:region
SIO_000974: 55049f23-4602-4a1a-9b8a-8effbec40838

position:18520346:1
position: 18520346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18520545:1
position: 18520545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55049f23-4602-4a1a-9b8a-8effbec40838
SIO_000300: 1
SIO_000628: feature:18520346-18520545:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987877
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18539285..18539484
location: region:18539285-18539484:1
BFO_0000051: feature:18539285-18539484:1:region
SIO_000974: 8de99b48-34ee-4705-afbe-7eb75ec42e52

position:18539285:1
position: 18539285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18539484:1
position: 18539484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8de99b48-34ee-4705-afbe-7eb75ec42e52
SIO_000300: 1
SIO_000628: feature:18539285-18539484:1:region

Amphipyra berbera genome assembly, chromosome: 3.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 3.
sequence version: OU343124.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22621865
topology: linear
RO_0000086: SO_0000987
location: 1..22621865
location: region:1-22621865:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22621865:1
position: 22621865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22621865:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 3
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 4.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 4.
sequence version: OU343125.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22008524
topology: linear
RO_0000086: SO_0000987
location: 1..22008524
location: region:1-22008524:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22008524:1
position: 22008524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22008524:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 4
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 5.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 5.
sequence version: OU343126.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21938945
topology: linear
RO_0000086: SO_0000987
location: 1..21938945
location: region:1-21938945:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21938945:1
position: 21938945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21938945:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987877
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18635701..18635900
location: region:18635701-18635900:1
BFO_0000051: feature:18635701-18635900:1:region
SIO_000974: 2ec08df5-7d81-4bac-b121-b75ac34c3f06

position:18635701:1
position: 18635701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18635900:1
position: 18635900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2ec08df5-7d81-4bac-b121-b75ac34c3f06
SIO_000300: 1
SIO_000628: feature:18635701-18635900:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987877
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18657311..18657510
location: region:18657311-18657510:1
BFO_0000051: feature:18657311-18657510:1:region
SIO_000974: 17f8b7f7-35fc-41d4-9f3b-b771d1b51ef4

position:18657311:1
position: 18657311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18657510:1
position: 18657510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17f8b7f7-35fc-41d4-9f3b-b771d1b51ef4
SIO_000300: 1
SIO_000628: feature:18657311-18657510:1:region

Amphipyra berbera genome assembly, chromosome: 6.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 6.
sequence version: OU343127.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21875227
topology: linear
RO_0000086: SO_0000987
location: 1..21875227
location: region:1-21875227:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21875227:1
position: 21875227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21875227:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 6
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 7.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 7.
sequence version: OU343128.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21870261
topology: linear
RO_0000086: SO_0000987
location: 1..21870261
location: region:1-21870261:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21870261:1
position: 21870261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21870261:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 7
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 8.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 8.
sequence version: OU343129.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21689008
topology: linear
RO_0000086: SO_0000987
location: 1..21689008
location: region:1-21689008:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21689008:1
position: 21689008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21689008:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 8
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 9.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 9.
sequence version: OU343130.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21688464
topology: linear
RO_0000086: SO_0000987
location: 1..21688464
location: region:1-21688464:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21688464:1
position: 21688464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21688464:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 9
mol type: genomic DNA

Amphipyra berbera genome assembly, chromosome: 10.
type: Entry
definition: Amphipyra berbera genome assembly, chromosome: 10.
sequence version: OU343131.1
sequence date: 2022-02-09
sequence: sequence
division: INV
source: Amphipyra berbera
organism: Amphipyra berbera
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra.
reference: 1
reference: 2
comment: The assembly ilAmpBerb1.2 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21367993
topology: linear
RO_0000086: SO_0000987
location: 1..21367993
location: region:1-21367993:1
RO_0002162: 987877

1
journal: Submitted (25-JUN-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (05-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21367993:1
position: 21367993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21367993:1:source
BFO_0000050: sequence
organism: Amphipyra berbera
chromosome: 10
mol type: genomic DNA