Sarcophaga variegata genome assembly, chromosome: 3.
type: Entry
definition: Sarcophaga variegata genome assembly, chromosome: 3.
sequence version: OW026360.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 130241815
topology: linear
RO_0000086: SO_0000987
location: 1..130241815
location: region:1-130241815:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130241815:1
position: 130241815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-130241815:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
chromosome: 3
mol type: genomic DNA

236851
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9157045..9157544
location: region:9157045-9157544:1
BFO_0000051: feature:9157045-9157544:1:region
SIO_000974: 14d9a693-1367-458d-8df1-71d72adefdc5

position:9157045:1
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position:9157544:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:9157045-9157544:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:10533975-10534474:1
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SIO_000974: e61ce853-0e7d-4dfb-a414-38ac5f7ed16f

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reference: sequence
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reference: sequence
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assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:11085673-11086172:1
BFO_0000051: feature:11085673-11086172:1:region
SIO_000974: 57081587-517b-47a6-bf48-b53bab0bf8b2

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assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
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estimated length: 500
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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gap type: unknown
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assembly_gap
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estimated length: 200
gap type: unknown
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assembly_gap
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estimated length: 500
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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estimated length: 500
gap type: unknown
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assembly_gap
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estimated length: 500
gap type: unknown
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assembly_gap
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gap type: unknown
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assembly_gap
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estimated length: 200
gap type: unknown
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assembly_gap
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subclass of: SO_0000730
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estimated length: 500
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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gap type: unknown
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assembly_gap
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gap type: unknown
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assembly_gap
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estimated length: 200
gap type: unknown
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estimated length: 200
gap type: unknown
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assembly_gap
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estimated length: 200
gap type: unknown
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assembly_gap
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subclass of: SO_0000730
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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subclass of: SO_0000730
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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assembly_gap
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gap type: unknown
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BFO_0000051: feature:72412330-72412829:1:region
SIO_000974: ee8247a8-be43-4370-b9d7-a34b6339ef78

position:72412330:1
position: 72412330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72412829:1
position: 72412829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee8247a8-be43-4370-b9d7-a34b6339ef78
SIO_000300: 1
SIO_000628: feature:72412330-72412829:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 72669617..72669816
location: region:72669617-72669816:1
BFO_0000051: feature:72669617-72669816:1:region
SIO_000974: 314aebb2-d4de-4a86-a777-e6e1ff0aa5fc

position:72669617:1
position: 72669617
reference: sequence
type: ForwardStrandPosition
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position:72669816:1
position: 72669816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

314aebb2-d4de-4a86-a777-e6e1ff0aa5fc
SIO_000300: 1
SIO_000628: feature:72669617-72669816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 73789197..73789696
location: region:73789197-73789696:1
BFO_0000051: feature:73789197-73789696:1:region
SIO_000974: 1085f958-dd42-44f1-9655-654d75d26307

position:73789197:1
position: 73789197
reference: sequence
type: ForwardStrandPosition
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position:73789696:1
position: 73789696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1085f958-dd42-44f1-9655-654d75d26307
SIO_000300: 1
SIO_000628: feature:73789197-73789696:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 75107749..75108248
location: region:75107749-75108248:1
BFO_0000051: feature:75107749-75108248:1:region
SIO_000974: 2c96521a-6ad7-4eec-9b3d-2a6ba68dabf6

position:75107749:1
position: 75107749
reference: sequence
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position:75108248:1
position: 75108248
reference: sequence
type: ForwardStrandPosition
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2c96521a-6ad7-4eec-9b3d-2a6ba68dabf6
SIO_000300: 1
SIO_000628: feature:75107749-75108248:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 78615320..78615519
location: region:78615320-78615519:1
BFO_0000051: feature:78615320-78615519:1:region
SIO_000974: c2a565a0-a78c-4ca1-a946-c09b25e038b3

position:78615320:1
position: 78615320
reference: sequence
type: ForwardStrandPosition
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position:78615519:1
position: 78615519
reference: sequence
type: ForwardStrandPosition
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c2a565a0-a78c-4ca1-a946-c09b25e038b3
SIO_000300: 1
SIO_000628: feature:78615320-78615519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 79425736..79425935
location: region:79425736-79425935:1
BFO_0000051: feature:79425736-79425935:1:region
SIO_000974: 5adc5deb-db30-49b8-a362-f60da1635cac

position:79425736:1
position: 79425736
reference: sequence
type: ForwardStrandPosition
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position:79425935:1
position: 79425935
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:79425736-79425935:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 85930045..85930244
location: region:85930045-85930244:1
BFO_0000051: feature:85930045-85930244:1:region
SIO_000974: 65220c5e-b9bb-4eba-a39b-68e576269b65

position:85930045:1
position: 85930045
reference: sequence
type: ForwardStrandPosition
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position:85930244:1
position: 85930244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:85930045-85930244:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 86205944..86206143
location: region:86205944-86206143:1
BFO_0000051: feature:86205944-86206143:1:region
SIO_000974: 1e8b3100-ba43-4eb1-a6ae-f5ac8ab9369d

position:86205944:1
position: 86205944
reference: sequence
type: ForwardStrandPosition
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position:86206143:1
position: 86206143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1e8b3100-ba43-4eb1-a6ae-f5ac8ab9369d
SIO_000300: 1
SIO_000628: feature:86205944-86206143:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 86816908..86817107
location: region:86816908-86817107:1
BFO_0000051: feature:86816908-86817107:1:region
SIO_000974: dc7b82c5-d0bf-4df9-9b8d-658d720bdbfc

position:86816908:1
position: 86816908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86817107:1
position: 86817107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc7b82c5-d0bf-4df9-9b8d-658d720bdbfc
SIO_000300: 1
SIO_000628: feature:86816908-86817107:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 90153204..90153403
location: region:90153204-90153403:1
BFO_0000051: feature:90153204-90153403:1:region
SIO_000974: a107ec36-b532-4fb5-8560-9206372f5b86

position:90153204:1
position: 90153204
reference: sequence
type: ForwardStrandPosition
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position:90153403:1
position: 90153403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:90153204-90153403:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 91968731..91968930
location: region:91968731-91968930:1
BFO_0000051: feature:91968731-91968930:1:region
SIO_000974: 9b8a19cc-dd5d-42f6-903c-5870895551e5

position:91968731:1
position: 91968731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91968930:1
position: 91968930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b8a19cc-dd5d-42f6-903c-5870895551e5
SIO_000300: 1
SIO_000628: feature:91968731-91968930:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 93039373..93039572
location: region:93039373-93039572:1
BFO_0000051: feature:93039373-93039572:1:region
SIO_000974: f7adb122-550b-46a0-ba98-5af865526daa

position:93039373:1
position: 93039373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93039572:1
position: 93039572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f7adb122-550b-46a0-ba98-5af865526daa
SIO_000300: 1
SIO_000628: feature:93039373-93039572:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 94749605..94749804
location: region:94749605-94749804:1
BFO_0000051: feature:94749605-94749804:1:region
SIO_000974: 28888893-ef5f-4df0-b67e-879f2a75d88a

position:94749605:1
position: 94749605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94749804:1
position: 94749804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:94749605-94749804:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 95524861..95525060
location: region:95524861-95525060:1
BFO_0000051: feature:95524861-95525060:1:region
SIO_000974: 93627dca-f759-4251-afc9-8fa81371cdc2

position:95524861:1
position: 95524861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95525060:1
position: 95525060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93627dca-f759-4251-afc9-8fa81371cdc2
SIO_000300: 1
SIO_000628: feature:95524861-95525060:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 96148649..96148848
location: region:96148649-96148848:1
BFO_0000051: feature:96148649-96148848:1:region
SIO_000974: f2ba2e99-a27a-4b8f-ba07-0eac59c59528

position:96148649:1
position: 96148649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96148848:1
position: 96148848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2ba2e99-a27a-4b8f-ba07-0eac59c59528
SIO_000300: 1
SIO_000628: feature:96148649-96148848:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 98449465..98449664
location: region:98449465-98449664:1
BFO_0000051: feature:98449465-98449664:1:region
SIO_000974: a4249964-e9f8-4774-97d7-1a53d3dcb698

position:98449465:1
position: 98449465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98449664:1
position: 98449664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:98449465-98449664:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 103998718..103999217
location: region:103998718-103999217:1
BFO_0000051: feature:103998718-103999217:1:region
SIO_000974: d07d121e-4f28-4ac1-9b82-0f20bf3bc573

position:103998718:1
position: 103998718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103999217:1
position: 103999217
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:103998718-103999217:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 106727308..106727807
location: region:106727308-106727807:1
BFO_0000051: feature:106727308-106727807:1:region
SIO_000974: 5a23c5d0-362e-4361-81f0-974ce071cbe8

position:106727308:1
position: 106727308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106727807:1
position: 106727807
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:106727308-106727807:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 113549147..113549646
location: region:113549147-113549646:1
BFO_0000051: feature:113549147-113549646:1:region
SIO_000974: a72adefd-1858-4628-af24-f291724f5160

position:113549147:1
position: 113549147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113549646:1
position: 113549646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:113549147-113549646:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 117263053..117263552
location: region:117263053-117263552:1
BFO_0000051: feature:117263053-117263552:1:region
SIO_000974: 22b3fe91-8046-4f30-8eec-98f5d8934b94

position:117263053:1
position: 117263053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117263552:1
position: 117263552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22b3fe91-8046-4f30-8eec-98f5d8934b94
SIO_000300: 1
SIO_000628: feature:117263053-117263552:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 125936756..125937255
location: region:125936756-125937255:1
BFO_0000051: feature:125936756-125937255:1:region
SIO_000974: 2665e982-e7a1-4ef6-bea3-8cde06332148

position:125936756:1
position: 125936756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125937255:1
position: 125937255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2665e982-e7a1-4ef6-bea3-8cde06332148
SIO_000300: 1
SIO_000628: feature:125936756-125937255:1:region

Sarcophaga variegata genome assembly, chromosome: 4.
type: Entry
definition: Sarcophaga variegata genome assembly, chromosome: 4.
sequence version: OW026361.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 129560050
topology: linear
RO_0000086: SO_0000987
location: 1..129560050
location: region:1-129560050:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129560050:1
position: 129560050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-129560050:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10555928..10556127
location: region:10555928-10556127:1
BFO_0000051: feature:10555928-10556127:1:region
SIO_000974: 74437e9d-e31c-41ed-8533-5c26e1a6fa8a

position:10555928:1
position: 10555928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10556127:1
position: 10556127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74437e9d-e31c-41ed-8533-5c26e1a6fa8a
SIO_000300: 1
SIO_000628: feature:10555928-10556127:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10903246..10903445
location: region:10903246-10903445:1
BFO_0000051: feature:10903246-10903445:1:region
SIO_000974: 29e732a8-e1fa-426b-ab72-d846e3f3963a

position:10903246:1
position: 10903246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10903445:1
position: 10903445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29e732a8-e1fa-426b-ab72-d846e3f3963a
SIO_000300: 1
SIO_000628: feature:10903246-10903445:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16247980..16248479
location: region:16247980-16248479:1
BFO_0000051: feature:16247980-16248479:1:region
SIO_000974: e6b4f8df-eb3d-466a-88cc-5a7649732905

position:16247980:1
position: 16247980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16248479:1
position: 16248479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6b4f8df-eb3d-466a-88cc-5a7649732905
SIO_000300: 1
SIO_000628: feature:16247980-16248479:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23885904..23886103
location: region:23885904-23886103:1
BFO_0000051: feature:23885904-23886103:1:region
SIO_000974: 41acff89-92e3-4d44-93b0-b70c30896ecf

position:23885904:1
position: 23885904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23886103:1
position: 23886103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41acff89-92e3-4d44-93b0-b70c30896ecf
SIO_000300: 1
SIO_000628: feature:23885904-23886103:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24063449..24063648
location: region:24063449-24063648:1
BFO_0000051: feature:24063449-24063648:1:region
SIO_000974: cf9cb86d-7c0a-45ee-9b26-4362d68f2f51

position:24063449:1
position: 24063449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24063648:1
position: 24063648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24063449-24063648:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24202008..24202207
location: region:24202008-24202207:1
BFO_0000051: feature:24202008-24202207:1:region
SIO_000974: d8472c6d-e5f5-41dd-ba83-f3ff3aa0d3ea

position:24202008:1
position: 24202008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24202207:1
position: 24202207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8472c6d-e5f5-41dd-ba83-f3ff3aa0d3ea
SIO_000300: 1
SIO_000628: feature:24202008-24202207:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24320336..24320535
location: region:24320336-24320535:1
BFO_0000051: feature:24320336-24320535:1:region
SIO_000974: 3ba02b0b-7819-40ca-9843-4b7728c0cd87

position:24320336:1
position: 24320336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24320535:1
position: 24320535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ba02b0b-7819-40ca-9843-4b7728c0cd87
SIO_000300: 1
SIO_000628: feature:24320336-24320535:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24527296..24527495
location: region:24527296-24527495:1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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location: region:55789144-55789343:1
BFO_0000051: feature:55789144-55789343:1:region
SIO_000974: 9f329051-e0ca-4792-a120-64cec55a44af

position:55789144:1
position: 55789144
reference: sequence
type: ForwardStrandPosition
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position:55789343:1
position: 55789343
reference: sequence
type: ForwardStrandPosition
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9f329051-e0ca-4792-a120-64cec55a44af
SIO_000300: 1
SIO_000628: feature:55789144-55789343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 55870094..55870293
location: region:55870094-55870293:1
BFO_0000051: feature:55870094-55870293:1:region
SIO_000974: 7c61360c-1d9b-4594-a5a6-d26caf0ebf34

position:55870094:1
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reference: sequence
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position:55870293:1
position: 55870293
reference: sequence
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7c61360c-1d9b-4594-a5a6-d26caf0ebf34
SIO_000300: 1
SIO_000628: feature:55870094-55870293:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:55944138-55944337:1
BFO_0000051: feature:55944138-55944337:1:region
SIO_000974: 69364402-114a-45fb-85cf-5cc8f0dec989

position:55944138:1
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reference: sequence
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position:55944337:1
position: 55944337
reference: sequence
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SIO_000300: 1
SIO_000628: feature:55944138-55944337:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56021187-56021386:1
BFO_0000051: feature:56021187-56021386:1:region
SIO_000974: aa6d7295-b7bc-4267-91ad-62a79e5e15e6

position:56021187:1
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reference: sequence
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position:56021386:1
position: 56021386
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56021187-56021386:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56092212-56092411:1
BFO_0000051: feature:56092212-56092411:1:region
SIO_000974: f98b783b-779f-46b5-9c42-e899b7a38b4f

position:56092212:1
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reference: sequence
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position:56092411:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56092212-56092411:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56161810-56162009:1
BFO_0000051: feature:56161810-56162009:1:region
SIO_000974: b4d8076d-deec-4e21-8553-b34d26453c62

position:56161810:1
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reference: sequence
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position:56162009:1
position: 56162009
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56161810-56162009:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56227985-56228184:1
BFO_0000051: feature:56227985-56228184:1:region
SIO_000974: 6d282a7d-8f59-4f84-a321-58f42577a006

position:56227985:1
position: 56227985
reference: sequence
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position:56228184:1
position: 56228184
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56227985-56228184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56293162-56293361:1
BFO_0000051: feature:56293162-56293361:1:region
SIO_000974: d21297c6-3128-4929-b4eb-a41e17e562a9

position:56293162:1
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reference: sequence
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position:56293361:1
position: 56293361
reference: sequence
type: ForwardStrandPosition
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d21297c6-3128-4929-b4eb-a41e17e562a9
SIO_000300: 1
SIO_000628: feature:56293162-56293361:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56356268-56356467:1
BFO_0000051: feature:56356268-56356467:1:region
SIO_000974: a3c40a50-ef92-49f6-a9d7-e6dfb9516c7d

position:56356268:1
position: 56356268
reference: sequence
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position:56356467:1
position: 56356467
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56356268-56356467:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56417665-56417864:1
BFO_0000051: feature:56417665-56417864:1:region
SIO_000974: ea0462a8-415b-4dbe-ad73-dc92a1c5a6e5

position:56417665:1
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reference: sequence
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position:56417864:1
position: 56417864
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56417665-56417864:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56478765..56478964
location: region:56478765-56478964:1
BFO_0000051: feature:56478765-56478964:1:region
SIO_000974: e155df6c-0f7e-4e91-af10-ef73a9e012f7

position:56478765:1
position: 56478765
reference: sequence
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position:56478964:1
position: 56478964
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56478765-56478964:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56538661-56538860:1
BFO_0000051: feature:56538661-56538860:1:region
SIO_000974: b5fd6d56-2a6c-4d94-a3ec-4bf553811375

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reference: sequence
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position:56538860:1
position: 56538860
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56538661-56538860:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56597397-56597596:1
BFO_0000051: feature:56597397-56597596:1:region
SIO_000974: 01f353f8-26ab-4cc8-94d9-62aa2f4733c7

position:56597397:1
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reference: sequence
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position:56597596:1
position: 56597596
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56597397-56597596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56653580-56653779:1
BFO_0000051: feature:56653580-56653779:1:region
SIO_000974: a8895cdf-2a95-4b77-92f3-60a6b1610173

position:56653580:1
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reference: sequence
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position:56653779:1
position: 56653779
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56653580-56653779:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56709141-56709340:1
BFO_0000051: feature:56709141-56709340:1:region
SIO_000974: 70952ced-3e54-408d-a2c1-df1bc16dd2df

position:56709141:1
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reference: sequence
type: ForwardStrandPosition
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position:56709340:1
position: 56709340
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56709141-56709340:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56764014-56764213:1
BFO_0000051: feature:56764014-56764213:1:region
SIO_000974: 4a7747c2-19e3-4d8b-ade0-38bb4d453450

position:56764014:1
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reference: sequence
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position:56764213:1
position: 56764213
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56764014-56764213:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56818656-56818855:1
BFO_0000051: feature:56818656-56818855:1:region
SIO_000974: 14552b79-9dd1-4ba9-bd90-34c5f7aa5bb0

position:56818656:1
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reference: sequence
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position:56818855:1
position: 56818855
reference: sequence
type: ForwardStrandPosition
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14552b79-9dd1-4ba9-bd90-34c5f7aa5bb0
SIO_000300: 1
SIO_000628: feature:56818656-56818855:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56872170-56872369:1
BFO_0000051: feature:56872170-56872369:1:region
SIO_000974: 4c84f83a-507e-4782-b372-1dae10c9004e

position:56872170:1
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reference: sequence
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position:56872369:1
position: 56872369
reference: sequence
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SIO_000300: 1
SIO_000628: feature:56872170-56872369:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56925543-56925742:1
BFO_0000051: feature:56925543-56925742:1:region
SIO_000974: 711de7bf-ad56-4188-b289-3f504e77ad6c

position:56925543:1
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reference: sequence
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position:56925742:1
position: 56925742
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56925543-56925742:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:56978047-56978246:1
BFO_0000051: feature:56978047-56978246:1:region
SIO_000974: afd5e564-46d2-47cc-b030-b1fda1bc5ddc

position:56978047:1
position: 56978047
reference: sequence
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position:56978246:1
position: 56978246
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:56978047-56978246:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57030548-57030747:1
BFO_0000051: feature:57030548-57030747:1:region
SIO_000974: fd699616-2706-43fd-b620-3b997a691594

position:57030548:1
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reference: sequence
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position:57030747:1
position: 57030747
reference: sequence
type: ForwardStrandPosition
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fd699616-2706-43fd-b620-3b997a691594
SIO_000300: 1
SIO_000628: feature:57030548-57030747:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57082245-57082444:1
BFO_0000051: feature:57082245-57082444:1:region
SIO_000974: db7c3033-4f5d-4d6c-9204-b3450c704fa4

position:57082245:1
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reference: sequence
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position:57082444:1
position: 57082444
reference: sequence
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db7c3033-4f5d-4d6c-9204-b3450c704fa4
SIO_000300: 1
SIO_000628: feature:57082245-57082444:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57133564-57133763:1
BFO_0000051: feature:57133564-57133763:1:region
SIO_000974: ff34525c-3123-4d1b-a325-e7da32356442

position:57133564:1
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reference: sequence
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position:57133763:1
position: 57133763
reference: sequence
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SIO_000300: 1
SIO_000628: feature:57133564-57133763:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57184349-57184548:1
BFO_0000051: feature:57184349-57184548:1:region
SIO_000974: 486f0bf8-be95-4394-9acd-21511938c071

position:57184349:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57184349-57184548:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57234749-57234948:1
BFO_0000051: feature:57234749-57234948:1:region
SIO_000974: df918eca-fd1a-4204-abd8-63061d5a3c76

position:57234749:1
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position:57234948:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57234749-57234948:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57284225-57284424:1
BFO_0000051: feature:57284225-57284424:1:region
SIO_000974: 88b57284-b27f-46b8-b2f6-2dac5a2196ce

position:57284225:1
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reference: sequence
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position:57284424:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57284225-57284424:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57333685-57333884:1
BFO_0000051: feature:57333685-57333884:1:region
SIO_000974: b65cf544-ca55-4354-a0c3-f7852d1ed940

position:57333685:1
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reference: sequence
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position:57333884:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57333685-57333884:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57382825-57383024:1
BFO_0000051: feature:57382825-57383024:1:region
SIO_000974: 376a806f-19b3-4325-9d46-f9cf5cfa3628

position:57382825:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57382825-57383024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57431346-57431545:1
BFO_0000051: feature:57431346-57431545:1:region
SIO_000974: 062a0e13-3939-4e1d-9e38-1ba3881a0801

position:57431346:1
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reference: sequence
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position:57431545:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57431346-57431545:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57479756-57479955:1
BFO_0000051: feature:57479756-57479955:1:region
SIO_000974: da937671-64a2-4ff3-80a3-ef573c8f429a

position:57479756:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57479756-57479955:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:57529230-57529429:1
BFO_0000051: feature:57529230-57529429:1:region
SIO_000974: d74622be-7230-4a33-bd82-dd5e79f48e5d

position:57529230:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:57529230-57529429:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000051: feature:57844945-57845144:1:region
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:57888553-57888752:1:region

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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:58060992-58061191:1:region
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SIO_000300: 1
SIO_000628: feature:58060992-58061191:1:region

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RO_0002162: 236851
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BFO_0000050: sequence
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BFO_0000051: feature:58103773-58103972:1:region
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SIO_000300: 1
SIO_000628: feature:58103773-58103972:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:58146133-58146332:1:region
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SIO_000300: 1
SIO_000628: feature:58146133-58146332:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:58354615-58354814:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:58395331-58395530:1:region
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SIO_000300: 1
SIO_000628: feature:58395331-58395530:1:region

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estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:58434811-58435010:1:region
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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BFO_0000051: feature:58474251-58474450:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:58630385-58630584:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000051: feature:58707609-58707808:1:region
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SIO_000300: 1
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gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:58784510-58784709:1:region
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SIO_000300: 1
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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estimated length: 200
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SIO_000300: 1
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RO_0002162: 236851
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000628: feature:59727658-59727857:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:59862549-59862748:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:59896034-59896233:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:59929327-59929526:1:region
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09d90d8f-5ca7-43e6-9c02-cdd5f559bca9
SIO_000300: 1
SIO_000628: feature:59929327-59929526:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:59962564-59962763:1:region
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SIO_000300: 1
SIO_000628: feature:59962564-59962763:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:59995774-59995973:1:region
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SIO_000300: 1
SIO_000628: feature:59995774-59995973:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60028650-60028849:1:region
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:60061386-60061585:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60093849-60094048:1:region
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SIO_000300: 1
SIO_000628: feature:60093849-60094048:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60126151-60126350:1:region
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SIO_000300: 1
SIO_000628: feature:60126151-60126350:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60158391-60158590:1:region
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SIO_000300: 1
SIO_000628: feature:60158391-60158590:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60190621-60190820:1:region
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SIO_000300: 1
SIO_000628: feature:60190621-60190820:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60222613-60222812:1:region
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SIO_000300: 1
SIO_000628: feature:60222613-60222812:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60254528-60254727:1:region
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SIO_000300: 1
SIO_000628: feature:60254528-60254727:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60286255-60286454:1:region
SIO_000974: 391fb121-829e-4f9c-a666-5a873e91c496

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SIO_000300: 1
SIO_000628: feature:60286255-60286454:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60317700-60317899:1:region
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SIO_000300: 1
SIO_000628: feature:60317700-60317899:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60349143-60349342:1:region
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SIO_000300: 1
SIO_000628: feature:60349143-60349342:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60380546-60380745:1:region
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SIO_000300: 1
SIO_000628: feature:60380546-60380745:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60411938-60412137:1:region
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SIO_000300: 1
SIO_000628: feature:60411938-60412137:1:region

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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:60443178-60443377:1
BFO_0000051: feature:60443178-60443377:1:region
SIO_000974: ebba584a-4f58-4b5a-8948-5c8dfa429ce1

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SIO_000300: 1
SIO_000628: feature:60443178-60443377:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60474182-60474381:1:region
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SIO_000300: 1
SIO_000628: feature:60474182-60474381:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60504950-60505149:1:region
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SIO_000300: 1
SIO_000628: feature:60504950-60505149:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60535502-60535701:1:region
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SIO_000300: 1
SIO_000628: feature:60535502-60535701:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60565942-60566141:1:region
SIO_000974: a4664ca2-2a01-41cd-9192-779558c0ba9a

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reference: sequence
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SIO_000300: 1
SIO_000628: feature:60565942-60566141:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60596375-60596574:1:region
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SIO_000300: 1
SIO_000628: feature:60596375-60596574:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60626741-60626940:1:region
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SIO_000300: 1
SIO_000628: feature:60626741-60626940:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60657071-60657270:1:region
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SIO_000300: 1
SIO_000628: feature:60657071-60657270:1:region

assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60687276-60687475:1:region
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SIO_000300: 1
SIO_000628: feature:60687276-60687475:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60717466-60717665:1:region
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SIO_000300: 1
SIO_000628: feature:60717466-60717665:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60747422-60747621:1:region
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:60777225-60777424:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60807004-60807203:1:region
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SIO_000300: 1
SIO_000628: feature:60807004-60807203:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60836579-60836778:1:region
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SIO_000300: 1
SIO_000628: feature:60836579-60836778:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:60865985-60866184:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:60865985-60866184:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000628: feature:60895314-60895513:1:region

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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000628: feature:60924613-60924812:1:region

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BFO_0000050: sequence
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SIO_000628: feature:61012085-61012284:1:region

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BFO_0000050: sequence
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SIO_000628: feature:61127360-61127559:1:region

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RO_0002162: 236851
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gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:61155155-61155354:1:region
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SIO_000628: feature:61155155-61155354:1:region

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RO_0002162: 236851
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:61182932-61183131:1:region

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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:61210559-61210758:1:region
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SIO_000300: 1
SIO_000628: feature:61210559-61210758:1:region

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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:61293251-61293450:1:region

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gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:61320707-61320906:1:region
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SIO_000300: 1
SIO_000628: feature:61320707-61320906:1:region

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BFO_0000050: sequence
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SIO_000628: feature:61348052-61348251:1:region

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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000628: feature:61428884-61429083:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:61455257-61455456:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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assembly_gap
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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:61738932-61739131:1:region

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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000628: feature:61813705-61813904:1:region

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SIO_000628: feature:61838394-61838593:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:61887178-61887377:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:61935877-61936076:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:61984141-61984340:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:62008119-62008318:1:region
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SIO_000300: 1
SIO_000628: feature:62008119-62008318:1:region

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estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:62032071-62032270:1:region
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SIO_000300: 1
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estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:62055827-62056026:1:region
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SIO_000300: 1
SIO_000628: feature:62055827-62056026:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:62079318-62079517:1:region
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SIO_000300: 1
SIO_000628: feature:62079318-62079517:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:62102657-62102856:1:region
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SIO_000300: 1
SIO_000628: feature:62102657-62102856:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:62125644-62125843:1:region
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SIO_000300: 1
SIO_000628: feature:62125644-62125843:1:region

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RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:62148190-62148389:1:region
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SIO_000300: 1
SIO_000628: feature:62148190-62148389:1:region

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RO_0002162: 236851
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:62170602-62170801:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:62259373-62259572:1:region

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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:62281269-62281468:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:62302537-62302736:1:region
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SIO_000300: 1
SIO_000628: feature:62302537-62302736:1:region

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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:62364521-62364720:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236851
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BFO_0000050: sequence
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BFO_0000051: feature:62404332-62404531:1:region
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SIO_000300: 1
SIO_000628: feature:62404332-62404531:1:region

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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:62423912-62424111:1:region
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5b981832-cb02-4e52-98a1-4dee9280bdfb
SIO_000300: 1
SIO_000628: feature:62423912-62424111:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 62443351..62443550
location: region:62443351-62443550:1
BFO_0000051: feature:62443351-62443550:1:region
SIO_000974: b9a9edc7-2bba-48c3-b939-d098523401bb

position:62443351:1
position: 62443351
reference: sequence
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position:62443550:1
position: 62443550
reference: sequence
type: ForwardStrandPosition
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b9a9edc7-2bba-48c3-b939-d098523401bb
SIO_000300: 1
SIO_000628: feature:62443351-62443550:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 62461644..62461843
location: region:62461644-62461843:1
BFO_0000051: feature:62461644-62461843:1:region
SIO_000974: 644fa83c-85be-46aa-95d3-00832b0d4c22

position:62461644:1
position: 62461644
reference: sequence
type: ForwardStrandPosition
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position:62461843:1
position: 62461843
reference: sequence
type: ForwardStrandPosition
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644fa83c-85be-46aa-95d3-00832b0d4c22
SIO_000300: 1
SIO_000628: feature:62461644-62461843:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:62478058-62478257:1
BFO_0000051: feature:62478058-62478257:1:region
SIO_000974: 3aa1d6a5-4cdc-4393-82b5-e49471700094

position:62478058:1
position: 62478058
reference: sequence
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position:62478257:1
position: 62478257
reference: sequence
type: ForwardStrandPosition
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3aa1d6a5-4cdc-4393-82b5-e49471700094
SIO_000300: 1
SIO_000628: feature:62478058-62478257:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 62485046..62485245
location: region:62485046-62485245:1
BFO_0000051: feature:62485046-62485245:1:region
SIO_000974: 53b2aba2-c3f8-40d1-82fb-8d50236b8b41

position:62485046:1
position: 62485046
reference: sequence
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position:62485245:1
position: 62485245
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:62485046-62485245:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:63204224-63204423:1
BFO_0000051: feature:63204224-63204423:1:region
SIO_000974: 8935be00-1b24-466d-9ecb-33f25bf9410f

position:63204224:1
position: 63204224
reference: sequence
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position: 63204423
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:63204224-63204423:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:63365607-63366106:1
BFO_0000051: feature:63365607-63366106:1:region
SIO_000974: 497ad915-dd5e-4e70-a6ce-58575f935658

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reference: sequence
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position: 63366106
reference: sequence
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SIO_000300: 1
SIO_000628: feature:63365607-63366106:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:63514960-63515159:1
BFO_0000051: feature:63514960-63515159:1:region
SIO_000974: 14810cdc-fe71-4277-afdf-c61ab95121c5

position:63514960:1
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position: 63515159
reference: sequence
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14810cdc-fe71-4277-afdf-c61ab95121c5
SIO_000300: 1
SIO_000628: feature:63514960-63515159:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:63611472-63611671:1
BFO_0000051: feature:63611472-63611671:1:region
SIO_000974: 8a29e307-809c-4b55-8815-c60f732d0360

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position: 63611671
reference: sequence
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8a29e307-809c-4b55-8815-c60f732d0360
SIO_000300: 1
SIO_000628: feature:63611472-63611671:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:63894416-63894615:1
BFO_0000051: feature:63894416-63894615:1:region
SIO_000974: d2de8305-9b9a-4c70-8274-512eb1781444

position:63894416:1
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reference: sequence
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position: 63894615
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:63894416-63894615:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:64324592-64324791:1
BFO_0000051: feature:64324592-64324791:1:region
SIO_000974: 4a7474cd-ea1b-4808-94b1-e21fe1f9b7b8

position:64324592:1
position: 64324592
reference: sequence
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position:64324791:1
position: 64324791
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:64324592-64324791:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:64737697-64737896:1
BFO_0000051: feature:64737697-64737896:1:region
SIO_000974: bd0f5ced-0fdb-4f9c-a595-3165f966c655

position:64737697:1
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reference: sequence
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position: 64737896
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:64737697-64737896:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:65252887-65253386:1
BFO_0000051: feature:65252887-65253386:1:region
SIO_000974: e1d9ee8d-f1e0-4b7e-a600-972ac3db4dec

position:65252887:1
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reference: sequence
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position:65253386:1
position: 65253386
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:65252887-65253386:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:65498039-65498538:1
BFO_0000051: feature:65498039-65498538:1:region
SIO_000974: 23b5eec0-cfc0-4736-8ba5-48b6c027fd52

position:65498039:1
position: 65498039
reference: sequence
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position: 65498538
reference: sequence
type: ForwardStrandPosition
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23b5eec0-cfc0-4736-8ba5-48b6c027fd52
SIO_000300: 1
SIO_000628: feature:65498039-65498538:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:67057772-67057971:1
BFO_0000051: feature:67057772-67057971:1:region
SIO_000974: ffa3b6c7-e2d0-4895-98ee-2aa4b15d0a0e

position:67057772:1
position: 67057772
reference: sequence
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position:67057971:1
position: 67057971
reference: sequence
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SIO_000300: 1
SIO_000628: feature:67057772-67057971:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:69155714-69156213:1
BFO_0000051: feature:69155714-69156213:1:region
SIO_000974: d3b2a064-bc8c-4307-a4a2-24e406c5f0bb

position:69155714:1
position: 69155714
reference: sequence
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position:69156213:1
position: 69156213
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:69155714-69156213:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:73709994-73710193:1
BFO_0000051: feature:73709994-73710193:1:region
SIO_000974: 5c5acf5f-2dbb-4983-8b06-bcf02be9cfdb

position:73709994:1
position: 73709994
reference: sequence
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position:73710193:1
position: 73710193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:73709994-73710193:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 74345221..74345420
location: region:74345221-74345420:1
BFO_0000051: feature:74345221-74345420:1:region
SIO_000974: 7785300b-9a80-4f56-a12e-8249a5dba241

position:74345221:1
position: 74345221
reference: sequence
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position:74345420:1
position: 74345420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:74345221-74345420:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:74399039-74399238:1
BFO_0000051: feature:74399039-74399238:1:region
SIO_000974: 333f8796-fae9-434d-9f20-0863b65f5106

position:74399039:1
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reference: sequence
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position:74399238:1
position: 74399238
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:74399039-74399238:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 75619550..75620049
location: region:75619550-75620049:1
BFO_0000051: feature:75619550-75620049:1:region
SIO_000974: e623b254-4ec1-4e68-95f2-b3aa8573863d

position:75619550:1
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reference: sequence
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position:75620049:1
position: 75620049
reference: sequence
type: ForwardStrandPosition
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e623b254-4ec1-4e68-95f2-b3aa8573863d
SIO_000300: 1
SIO_000628: feature:75619550-75620049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 76628787..76629286
location: region:76628787-76629286:1
BFO_0000051: feature:76628787-76629286:1:region
SIO_000974: aa0c870c-a6e0-4d81-9360-5ef8c61fdc44

position:76628787:1
position: 76628787
reference: sequence
type: ForwardStrandPosition
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position:76629286:1
position: 76629286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:76628787-76629286:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 84243086..84243585
location: region:84243086-84243585:1
BFO_0000051: feature:84243086-84243585:1:region
SIO_000974: 2342d14f-b9fb-4ae5-9e97-02001441aac3

position:84243086:1
position: 84243086
reference: sequence
type: ForwardStrandPosition
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position:84243585:1
position: 84243585
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:84243086-84243585:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
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location: region:88038730-88039229:1
BFO_0000051: feature:88038730-88039229:1:region
SIO_000974: eb97c0b3-9345-4dcf-949b-c241963e4946

position:88038730:1
position: 88038730
reference: sequence
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position:88039229:1
position: 88039229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:88038730-88039229:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 100809026..100809525
location: region:100809026-100809525:1
BFO_0000051: feature:100809026-100809525:1:region
SIO_000974: b6cf464f-0fa1-468e-9a92-d8a76d58a77f

position:100809026:1
position: 100809026
reference: sequence
type: ForwardStrandPosition
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position:100809525:1
position: 100809525
reference: sequence
type: ForwardStrandPosition
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b6cf464f-0fa1-468e-9a92-d8a76d58a77f
SIO_000300: 1
SIO_000628: feature:100809026-100809525:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 111283543..111283742
location: region:111283543-111283742:1
BFO_0000051: feature:111283543-111283742:1:region
SIO_000974: a39f4a56-e644-4c35-9f30-d4bc44451ab0

position:111283543:1
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reference: sequence
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position:111283742:1
position: 111283742
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:111283543-111283742:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 111366021..111366220
location: region:111366021-111366220:1
BFO_0000051: feature:111366021-111366220:1:region
SIO_000974: 0a97a39d-8e0a-4ac3-8e71-3126710e9630

position:111366021:1
position: 111366021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111366220:1
position: 111366220
reference: sequence
type: ForwardStrandPosition
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0a97a39d-8e0a-4ac3-8e71-3126710e9630
SIO_000300: 1
SIO_000628: feature:111366021-111366220:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 115633448..115633947
location: region:115633448-115633947:1
BFO_0000051: feature:115633448-115633947:1:region
SIO_000974: c83906ef-5ce7-4453-b879-8777f0fb634c

position:115633448:1
position: 115633448
reference: sequence
type: ForwardStrandPosition
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position:115633947:1
position: 115633947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c83906ef-5ce7-4453-b879-8777f0fb634c
SIO_000300: 1
SIO_000628: feature:115633448-115633947:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 119890890..119891089
location: region:119890890-119891089:1
BFO_0000051: feature:119890890-119891089:1:region
SIO_000974: 64a23cdd-a372-4739-9999-55819777957d

position:119890890:1
position: 119890890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119891089:1
position: 119891089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64a23cdd-a372-4739-9999-55819777957d
SIO_000300: 1
SIO_000628: feature:119890890-119891089:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 120018992..120019191
location: region:120018992-120019191:1
BFO_0000051: feature:120018992-120019191:1:region
SIO_000974: ac5cacd6-53ee-4f70-b877-f47b875bbac8

position:120018992:1
position: 120018992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120019191:1
position: 120019191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac5cacd6-53ee-4f70-b877-f47b875bbac8
SIO_000300: 1
SIO_000628: feature:120018992-120019191:1:region

Sarcophaga variegata genome assembly, chromosome: 5.
type: Entry
definition: Sarcophaga variegata genome assembly, chromosome: 5.
sequence version: OW026362.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 116879514
topology: linear
RO_0000086: SO_0000987
location: 1..116879514
location: region:1-116879514:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116879514:1
position: 116879514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-116879514:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 636106..636605
location: region:636106-636605:1
BFO_0000051: feature:636106-636605:1:region
SIO_000974: 08aaad19-1830-4b13-9b56-9434c8924518

position:636106:1
position: 636106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:636605:1
position: 636605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:636106-636605:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6575389..6575588
location: region:6575389-6575588:1
BFO_0000051: feature:6575389-6575588:1:region
SIO_000974: 7822462f-6267-44ac-99d7-efabd688cbd1

position:6575389:1
position: 6575389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6575588:1
position: 6575588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6575389-6575588:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7628463..7628662
location: region:7628463-7628662:1
BFO_0000051: feature:7628463-7628662:1:region
SIO_000974: 949dbdc3-f1c9-4ffa-9f27-c01d4cab9ad4

position:7628463:1
position: 7628463
reference: sequence
type: ForwardStrandPosition
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position:7628662:1
position: 7628662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7628463-7628662:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34714911..34715110
location: region:34714911-34715110:1
BFO_0000051: feature:34714911-34715110:1:region
SIO_000974: b0d11ec4-583c-4dc5-90ec-f3c57cc4bfe8

position:34714911:1
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reference: sequence
type: ForwardStrandPosition
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position:34715110:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:34714911-34715110:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:35916907-35917106:1
BFO_0000051: feature:35916907-35917106:1:region
SIO_000974: da3f35a3-7c01-4883-9bf3-d79973cf2b2f

position:35916907:1
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reference: sequence
type: ForwardStrandPosition
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position:35917106:1
position: 35917106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:35916907-35917106:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 36393596..36394095
location: region:36393596-36394095:1
BFO_0000051: feature:36393596-36394095:1:region
SIO_000974: a8d31c6c-f5c6-490c-b8e1-28d0765be8d6

position:36393596:1
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reference: sequence
type: ForwardStrandPosition
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position:36394095:1
position: 36394095
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:36393596-36394095:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36960522..36960721
location: region:36960522-36960721:1
BFO_0000051: feature:36960522-36960721:1:region
SIO_000974: 954aebc0-985c-4b48-8b07-b62c9cbfd196

position:36960522:1
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reference: sequence
type: ForwardStrandPosition
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position:36960721:1
position: 36960721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:36960522-36960721:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39136889..39137088
location: region:39136889-39137088:1
BFO_0000051: feature:39136889-39137088:1:region
SIO_000974: e409edc5-0530-45b9-9d4c-f1fd0ba38ea0

position:39136889:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39137088:1
position: 39137088
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:39136889-39137088:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39457064..39457263
location: region:39457064-39457263:1
BFO_0000051: feature:39457064-39457263:1:region
SIO_000974: db648b67-d7e1-4f4a-b870-7b2f4b232ff6

position:39457064:1
position: 39457064
reference: sequence
type: ForwardStrandPosition
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position:39457263:1
position: 39457263
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:39457064-39457263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 41193889..41194388
location: region:41193889-41194388:1
BFO_0000051: feature:41193889-41194388:1:region
SIO_000974: 967c2d6f-d372-40e2-a4ef-04256c8eb7cf

position:41193889:1
position: 41193889
reference: sequence
type: ForwardStrandPosition
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position:41194388:1
position: 41194388
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:41193889-41194388:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53714615..53714814
location: region:53714615-53714814:1
BFO_0000051: feature:53714615-53714814:1:region
SIO_000974: e77ffe26-e04c-4c21-adc0-714b016d2c3b

position:53714615:1
position: 53714615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53714814:1
position: 53714814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:53714615-53714814:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 55918620..55918819
location: region:55918620-55918819:1
BFO_0000051: feature:55918620-55918819:1:region
SIO_000974: 8e6e7459-ff0b-4fd3-a143-65436fc55fe4

position:55918620:1
position: 55918620
reference: sequence
type: ForwardStrandPosition
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position:55918819:1
position: 55918819
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:55918620-55918819:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63830978..63831177
location: region:63830978-63831177:1
BFO_0000051: feature:63830978-63831177:1:region
SIO_000974: 3df5665c-9864-4983-a4f5-daf2aa5e8738

position:63830978:1
position: 63830978
reference: sequence
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position:63831177:1
position: 63831177
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:63830978-63831177:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 65544718..65544917
location: region:65544718-65544917:1
BFO_0000051: feature:65544718-65544917:1:region
SIO_000974: e61dc14e-d121-442d-8ea5-3077b805353b

position:65544718:1
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reference: sequence
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position: 65544917
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:65544718-65544917:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 79353093..79353592
location: region:79353093-79353592:1
BFO_0000051: feature:79353093-79353592:1:region
SIO_000974: 1649b9c1-3166-4df0-9cc5-c408d3f52ea9

position:79353093:1
position: 79353093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79353592:1
position: 79353592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:79353093-79353592:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 85630062..85630561
location: region:85630062-85630561:1
BFO_0000051: feature:85630062-85630561:1:region
SIO_000974: a5a130b2-99d0-45fb-99f5-2230f4b266ea

position:85630062:1
position: 85630062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85630561:1
position: 85630561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5a130b2-99d0-45fb-99f5-2230f4b266ea
SIO_000300: 1
SIO_000628: feature:85630062-85630561:1:region

Sarcophaga variegata genome assembly, chromosome: X.
type: Entry
definition: Sarcophaga variegata genome assembly, chromosome: X.
sequence version: OW026363.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 10724851
topology: linear
RO_0000086: SO_0000987
location: 1..10724851
location: region:1-10724851:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10724851:1
position: 10724851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10724851:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
chromosome: X
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 294856..295055
location: region:294856-295055:1
BFO_0000051: feature:294856-295055:1:region
SIO_000974: 53e4a537-e73d-4594-932c-6c60a081df71

position:294856:1
position: 294856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295055:1
position: 295055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53e4a537-e73d-4594-932c-6c60a081df71
SIO_000300: 1
SIO_000628: feature:294856-295055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 806299..806498
location: region:806299-806498:1
BFO_0000051: feature:806299-806498:1:region
SIO_000974: d6229416-6fbe-4ec1-9414-da23b66cece8

position:806299:1
position: 806299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:806498:1
position: 806498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d6229416-6fbe-4ec1-9414-da23b66cece8
SIO_000300: 1
SIO_000628: feature:806299-806498:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1002397..1002596
location: region:1002397-1002596:1
BFO_0000051: feature:1002397-1002596:1:region
SIO_000974: 6ae57071-27c7-4987-bfd9-5d10603fc466

position:1002397:1
position: 1002397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1002596:1
position: 1002596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1002397-1002596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1033340..1033539
location: region:1033340-1033539:1
BFO_0000051: feature:1033340-1033539:1:region
SIO_000974: c293f00e-37bb-4846-99de-2022c3f3fde2

position:1033340:1
position: 1033340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1033539:1
position: 1033539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c293f00e-37bb-4846-99de-2022c3f3fde2
SIO_000300: 1
SIO_000628: feature:1033340-1033539:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1236764..1237263
location: region:1236764-1237263:1
BFO_0000051: feature:1236764-1237263:1:region
SIO_000974: 195ed3b5-df2e-4f0a-9630-e8fc038711d2

position:1236764:1
position: 1236764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1237263:1
position: 1237263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1236764-1237263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1546559..1547058
location: region:1546559-1547058:1
BFO_0000051: feature:1546559-1547058:1:region
SIO_000974: 69e8ba84-a00e-4f6e-81d6-8713d205874c

position:1546559:1
position: 1546559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1547058:1
position: 1547058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1546559-1547058:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2403122..2403621
location: region:2403122-2403621:1
BFO_0000051: feature:2403122-2403621:1:region
SIO_000974: d3880023-e2f4-47dc-bbce-4e354ecd83d4

position:2403122:1
position: 2403122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2403621:1
position: 2403621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2403122-2403621:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3422742..3422941
location: region:3422742-3422941:1
BFO_0000051: feature:3422742-3422941:1:region
SIO_000974: 3e4af8cc-bc0c-4363-a77b-e0027fe5453f

position:3422742:1
position: 3422742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3422941:1
position: 3422941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3422742-3422941:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4243491..4243690
location: region:4243491-4243690:1
BFO_0000051: feature:4243491-4243690:1:region
SIO_000974: 01311dd3-8c83-400d-831a-9a3577d47353

position:4243491:1
position: 4243491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4243690:1
position: 4243690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01311dd3-8c83-400d-831a-9a3577d47353
SIO_000300: 1
SIO_000628: feature:4243491-4243690:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4428610..4429109
location: region:4428610-4429109:1
BFO_0000051: feature:4428610-4429109:1:region
SIO_000974: 0893ed3a-055c-4039-a8dc-3ca69c64d908

position:4428610:1
position: 4428610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4429109:1
position: 4429109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0893ed3a-055c-4039-a8dc-3ca69c64d908
SIO_000300: 1
SIO_000628: feature:4428610-4429109:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4967468..4967667
location: region:4967468-4967667:1
BFO_0000051: feature:4967468-4967667:1:region
SIO_000974: 5c2837b6-0b82-43f0-a25f-4969794383e2

position:4967468:1
position: 4967468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4967667:1
position: 4967667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4967468-4967667:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5125289..5125488
location: region:5125289-5125488:1
BFO_0000051: feature:5125289-5125488:1:region
SIO_000974: 796e6e00-df5c-4db0-a336-1f7aebcd6d1e

position:5125289:1
position: 5125289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5125488:1
position: 5125488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

796e6e00-df5c-4db0-a336-1f7aebcd6d1e
SIO_000300: 1
SIO_000628: feature:5125289-5125488:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5349364..5349863
location: region:5349364-5349863:1
BFO_0000051: feature:5349364-5349863:1:region
SIO_000974: a2cd901e-1764-488c-8327-c06a4f946079

position:5349364:1
position: 5349364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5349863:1
position: 5349863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2cd901e-1764-488c-8327-c06a4f946079
SIO_000300: 1
SIO_000628: feature:5349364-5349863:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5943129..5943628
location: region:5943129-5943628:1
BFO_0000051: feature:5943129-5943628:1:region
SIO_000974: 431d6eb4-94b8-482c-9fe2-4dd009c3da14

position:5943129:1
position: 5943129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5943628:1
position: 5943628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

431d6eb4-94b8-482c-9fe2-4dd009c3da14
SIO_000300: 1
SIO_000628: feature:5943129-5943628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6517620..6517819
location: region:6517620-6517819:1
BFO_0000051: feature:6517620-6517819:1:region
SIO_000974: e401a1fe-e23a-4332-94b3-2fabbb3e9625

position:6517620:1
position: 6517620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6517819:1
position: 6517819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e401a1fe-e23a-4332-94b3-2fabbb3e9625
SIO_000300: 1
SIO_000628: feature:6517620-6517819:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6701360..6701859
location: region:6701360-6701859:1
BFO_0000051: feature:6701360-6701859:1:region
SIO_000974: ecea818d-164b-4267-bf0b-4bbcb0e222be

position:6701360:1
position: 6701360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6701859:1
position: 6701859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ecea818d-164b-4267-bf0b-4bbcb0e222be
SIO_000300: 1
SIO_000628: feature:6701360-6701859:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6863410..6863609
location: region:6863410-6863609:1
BFO_0000051: feature:6863410-6863609:1:region
SIO_000974: b0dfa72f-3e23-426e-be4e-cc6a08490410

position:6863410:1
position: 6863410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6863609:1
position: 6863609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0dfa72f-3e23-426e-be4e-cc6a08490410
SIO_000300: 1
SIO_000628: feature:6863410-6863609:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6927531..6927730
location: region:6927531-6927730:1
BFO_0000051: feature:6927531-6927730:1:region
SIO_000974: 39ac2d35-2e87-4d1a-9759-c39c3f661fe6

position:6927531:1
position: 6927531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6927730:1
position: 6927730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

39ac2d35-2e87-4d1a-9759-c39c3f661fe6
SIO_000300: 1
SIO_000628: feature:6927531-6927730:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6981929..6982428
location: region:6981929-6982428:1
BFO_0000051: feature:6981929-6982428:1:region
SIO_000974: fbd4a1a4-f377-433c-87f2-90a26a9e8f8a

position:6981929:1
position: 6981929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6982428:1
position: 6982428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbd4a1a4-f377-433c-87f2-90a26a9e8f8a
SIO_000300: 1
SIO_000628: feature:6981929-6982428:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7311941..7312140
location: region:7311941-7312140:1
BFO_0000051: feature:7311941-7312140:1:region
SIO_000974: 3141917d-c1dc-4339-b887-4b082b91dbb2

position:7311941:1
position: 7311941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7312140:1
position: 7312140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3141917d-c1dc-4339-b887-4b082b91dbb2
SIO_000300: 1
SIO_000628: feature:7311941-7312140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7879898..7880097
location: region:7879898-7880097:1
BFO_0000051: feature:7879898-7880097:1:region
SIO_000974: 86dd2a8e-6a42-4dd4-924c-673f28b8bcdb

position:7879898:1
position: 7879898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7880097:1
position: 7880097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86dd2a8e-6a42-4dd4-924c-673f28b8bcdb
SIO_000300: 1
SIO_000628: feature:7879898-7880097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8101982..8102181
location: region:8101982-8102181:1
BFO_0000051: feature:8101982-8102181:1:region
SIO_000974: ba1cae34-2266-4a8b-96cc-cbed7a934ef1

position:8101982:1
position: 8101982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8102181:1
position: 8102181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba1cae34-2266-4a8b-96cc-cbed7a934ef1
SIO_000300: 1
SIO_000628: feature:8101982-8102181:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8203583..8203782
location: region:8203583-8203782:1
BFO_0000051: feature:8203583-8203782:1:region
SIO_000974: 3ee01523-09c9-4471-9f7d-0f6c795560ae

position:8203583:1
position: 8203583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8203782:1
position: 8203782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ee01523-09c9-4471-9f7d-0f6c795560ae
SIO_000300: 1
SIO_000628: feature:8203583-8203782:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8322740..8322939
location: region:8322740-8322939:1
BFO_0000051: feature:8322740-8322939:1:region
SIO_000974: 826bce66-e7ff-483f-984e-23df90f8bfc1

position:8322740:1
position: 8322740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8322939:1
position: 8322939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

826bce66-e7ff-483f-984e-23df90f8bfc1
SIO_000300: 1
SIO_000628: feature:8322740-8322939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8466271..8466470
location: region:8466271-8466470:1
BFO_0000051: feature:8466271-8466470:1:region
SIO_000974: 455e386f-d612-489f-be1d-a8ed85712d08

position:8466271:1
position: 8466271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8466470:1
position: 8466470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

455e386f-d612-489f-be1d-a8ed85712d08
SIO_000300: 1
SIO_000628: feature:8466271-8466470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8678680..8678879
location: region:8678680-8678879:1
BFO_0000051: feature:8678680-8678879:1:region
SIO_000974: e53caf8a-c58a-4c8c-837d-d09cb8e4f37e

position:8678680:1
position: 8678680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8678879:1
position: 8678879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e53caf8a-c58a-4c8c-837d-d09cb8e4f37e
SIO_000300: 1
SIO_000628: feature:8678680-8678879:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9184565..9184764
location: region:9184565-9184764:1
BFO_0000051: feature:9184565-9184764:1:region
SIO_000974: ffe98917-9438-4703-874e-64b0d20fe907

position:9184565:1
position: 9184565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9184764:1
position: 9184764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ffe98917-9438-4703-874e-64b0d20fe907
SIO_000300: 1
SIO_000628: feature:9184565-9184764:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10430024..10430523
location: region:10430024-10430523:1
BFO_0000051: feature:10430024-10430523:1:region
SIO_000974: f9010eb0-830f-4c66-ac9d-3604ee5067eb

position:10430024:1
position: 10430024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10430523:1
position: 10430523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9010eb0-830f-4c66-ac9d-3604ee5067eb
SIO_000300: 1
SIO_000628: feature:10430024-10430523:1:region

Sarcophaga variegata genome assembly, chromosome: Y.
type: Entry
definition: Sarcophaga variegata genome assembly, chromosome: Y.
sequence version: OW026364.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 3572267
topology: linear
RO_0000086: SO_0000987
location: 1..3572267
location: region:1-3572267:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3572267:1
position: 3572267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3572267:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
chromosome: Y
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 82800..82999
location: region:82800-82999:1
BFO_0000051: feature:82800-82999:1:region
SIO_000974: 6e42d273-d06f-4e9b-b3e0-62a2ef3cf2d7

position:82800:1
position: 82800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82999:1
position: 82999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6e42d273-d06f-4e9b-b3e0-62a2ef3cf2d7
SIO_000300: 1
SIO_000628: feature:82800-82999:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 390315..390814
location: region:390315-390814:1
BFO_0000051: feature:390315-390814:1:region
SIO_000974: db445b41-68c4-4fcc-bc7d-48b805981aea

position:390315:1
position: 390315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390814:1
position: 390814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db445b41-68c4-4fcc-bc7d-48b805981aea
SIO_000300: 1
SIO_000628: feature:390315-390814:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 452961..453460
location: region:452961-453460:1
BFO_0000051: feature:452961-453460:1:region
SIO_000974: 12137b84-3245-464c-adfd-7f6c0cb9a0d4

position:452961:1
position: 452961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453460:1
position: 453460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

12137b84-3245-464c-adfd-7f6c0cb9a0d4
SIO_000300: 1
SIO_000628: feature:452961-453460:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 549926..550125
location: region:549926-550125:1
BFO_0000051: feature:549926-550125:1:region
SIO_000974: fa451bad-dbdf-4455-b4d9-c1755ad960cf

position:549926:1
position: 549926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550125:1
position: 550125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fa451bad-dbdf-4455-b4d9-c1755ad960cf
SIO_000300: 1
SIO_000628: feature:549926-550125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1032066..1032265
location: region:1032066-1032265:1
BFO_0000051: feature:1032066-1032265:1:region
SIO_000974: e2be9831-0a3c-4aaa-aa86-a6007d210a21

position:1032066:1
position: 1032066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1032265:1
position: 1032265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2be9831-0a3c-4aaa-aa86-a6007d210a21
SIO_000300: 1
SIO_000628: feature:1032066-1032265:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1089028..1089227
location: region:1089028-1089227:1
BFO_0000051: feature:1089028-1089227:1:region
SIO_000974: 24528658-d338-4977-a7e9-55ff83341cd2

position:1089028:1
position: 1089028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1089227:1
position: 1089227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24528658-d338-4977-a7e9-55ff83341cd2
SIO_000300: 1
SIO_000628: feature:1089028-1089227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1186096..1186295
location: region:1186096-1186295:1
BFO_0000051: feature:1186096-1186295:1:region
SIO_000974: 473efc81-1ae6-4391-af1f-5b99a742b9e3

position:1186096:1
position: 1186096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186295:1
position: 1186295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

473efc81-1ae6-4391-af1f-5b99a742b9e3
SIO_000300: 1
SIO_000628: feature:1186096-1186295:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1323433..1323632
location: region:1323433-1323632:1
BFO_0000051: feature:1323433-1323632:1:region
SIO_000974: fa5772e2-2750-4a12-a0cf-d38f7c63e496

position:1323433:1
position: 1323433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1323632:1
position: 1323632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fa5772e2-2750-4a12-a0cf-d38f7c63e496
SIO_000300: 1
SIO_000628: feature:1323433-1323632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1792317..1792816
location: region:1792317-1792816:1
BFO_0000051: feature:1792317-1792816:1:region
SIO_000974: f82cbdf8-7531-426d-bfbe-5ff17c978af8

position:1792317:1
position: 1792317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1792816:1
position: 1792816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f82cbdf8-7531-426d-bfbe-5ff17c978af8
SIO_000300: 1
SIO_000628: feature:1792317-1792816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2174112..2174611
location: region:2174112-2174611:1
BFO_0000051: feature:2174112-2174611:1:region
SIO_000974: ec5574a9-6324-4492-91c9-9c8bd9a18fa6

position:2174112:1
position: 2174112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2174611:1
position: 2174611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec5574a9-6324-4492-91c9-9c8bd9a18fa6
SIO_000300: 1
SIO_000628: feature:2174112-2174611:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2818869..2819368
location: region:2818869-2819368:1
BFO_0000051: feature:2818869-2819368:1:region
SIO_000974: dd2c8f40-6a10-4323-8dac-9acb0e0e8731

position:2818869:1
position: 2818869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2819368:1
position: 2819368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd2c8f40-6a10-4323-8dac-9acb0e0e8731
SIO_000300: 1
SIO_000628: feature:2818869-2819368:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236851
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3287425..3287624
location: region:3287425-3287624:1
BFO_0000051: feature:3287425-3287624:1:region
SIO_000974: 30bcd644-a9c6-4c25-8fe7-893d224f3d7a

position:3287425:1
position: 3287425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3287624:1
position: 3287624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

30bcd644-a9c6-4c25-8fe7-893d224f3d7a
SIO_000300: 1
SIO_000628: feature:3287425-3287624:1:region

Sarcophaga variegata genome assembly, organelle: mitochondrion.
type: Entry
definition: Sarcophaga variegata genome assembly, organelle: mitochondrion.
sequence version: OW026365.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: mitochondrion Sarcophaga variegata
organism: Sarcophaga variegata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
comment: The assembly idSarVari1.1 is based on 35x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size. Order\nand\norientation of scaffolds is uncertain, chromosome 4 53.2-62.5mb,\nchromosome\n5 39.1-41.2mb.

sequence
subclass of: SO_0000001
sequence length: 18672
topology: linear
RO_0000086: SO_0000987
location: 1..18672
location: region:1-18672:1
RO_0002162: 236851

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18672:1
position: 18672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18672:1:source
BFO_0000050: sequence
organism: Sarcophaga variegata
organelle: mitochondrion
mol type: genomic DNA

Leucozona laternaria genome assembly, chromosome: 1.
type: Entry
definition: Leucozona laternaria genome assembly, chromosome: 1.
sequence version: OW026366.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 283143227
topology: linear
RO_0000086: SO_0000987
location: 1..283143227
location: region:1-283143227:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283143227:1
position: 283143227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-283143227:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
chromosome: 1
mol type: genomic DNA

323312
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9470931..9471130
location: region:9470931-9471130:1
BFO_0000051: feature:9470931-9471130:1:region
SIO_000974: 35a05126-4292-4367-ac1c-8e8c351fcf76

position:9470931:1
position: 9470931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9471130:1
position: 9471130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35a05126-4292-4367-ac1c-8e8c351fcf76
SIO_000300: 1
SIO_000628: feature:9470931-9471130:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20250976..20251175
location: region:20250976-20251175:1
BFO_0000051: feature:20250976-20251175:1:region
SIO_000974: 81ba98f2-d891-45d6-ac2b-554e47dce27d

position:20250976:1
position: 20250976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20251175:1
position: 20251175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

81ba98f2-d891-45d6-ac2b-554e47dce27d
SIO_000300: 1
SIO_000628: feature:20250976-20251175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20376326..20376525
location: region:20376326-20376525:1
BFO_0000051: feature:20376326-20376525:1:region
SIO_000974: 1a392ca9-bec7-4bd3-987f-b3ae7f6cb8c6

position:20376326:1
position: 20376326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20376525:1
position: 20376525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a392ca9-bec7-4bd3-987f-b3ae7f6cb8c6
SIO_000300: 1
SIO_000628: feature:20376326-20376525:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33128230..33128429
location: region:33128230-33128429:1
BFO_0000051: feature:33128230-33128429:1:region
SIO_000974: 1d6ea980-590d-4b49-970d-ed1cd8d949e4

position:33128230:1
position: 33128230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33128429:1
position: 33128429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d6ea980-590d-4b49-970d-ed1cd8d949e4
SIO_000300: 1
SIO_000628: feature:33128230-33128429:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35236149..35236348
location: region:35236149-35236348:1
BFO_0000051: feature:35236149-35236348:1:region
SIO_000974: 02dad545-8493-44a1-a204-defc4ec65062

position:35236149:1
position: 35236149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35236348:1
position: 35236348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02dad545-8493-44a1-a204-defc4ec65062
SIO_000300: 1
SIO_000628: feature:35236149-35236348:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35869026..35869225
location: region:35869026-35869225:1
BFO_0000051: feature:35869026-35869225:1:region
SIO_000974: 48b0daa3-2c06-4f49-8950-bea7e5f180dd

position:35869026:1
position: 35869026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35869225:1
position: 35869225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

48b0daa3-2c06-4f49-8950-bea7e5f180dd
SIO_000300: 1
SIO_000628: feature:35869026-35869225:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40917201..40917400
location: region:40917201-40917400:1
BFO_0000051: feature:40917201-40917400:1:region
SIO_000974: d8682598-51b6-4259-97d3-ecdf66d12573

position:40917201:1
position: 40917201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40917400:1
position: 40917400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8682598-51b6-4259-97d3-ecdf66d12573
SIO_000300: 1
SIO_000628: feature:40917201-40917400:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42974256..42974455
location: region:42974256-42974455:1
BFO_0000051: feature:42974256-42974455:1:region
SIO_000974: fd427310-6a77-4f34-afcc-6f1f997e949e

position:42974256:1
position: 42974256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42974455:1
position: 42974455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd427310-6a77-4f34-afcc-6f1f997e949e
SIO_000300: 1
SIO_000628: feature:42974256-42974455:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44467025..44467224
location: region:44467025-44467224:1
BFO_0000051: feature:44467025-44467224:1:region
SIO_000974: 9354ac2d-101f-4cb5-b532-0f9299ae3fbf

position:44467025:1
position: 44467025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44467224:1
position: 44467224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9354ac2d-101f-4cb5-b532-0f9299ae3fbf
SIO_000300: 1
SIO_000628: feature:44467025-44467224:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45868819..45869018
location: region:45868819-45869018:1
BFO_0000051: feature:45868819-45869018:1:region
SIO_000974: 521f3c24-c33f-432e-a6c0-596b4e6d47a8

position:45868819:1
position: 45868819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45869018:1
position: 45869018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

521f3c24-c33f-432e-a6c0-596b4e6d47a8
SIO_000300: 1
SIO_000628: feature:45868819-45869018:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46484596..46484795
location: region:46484596-46484795:1
BFO_0000051: feature:46484596-46484795:1:region
SIO_000974: dc9c0c6a-4759-4170-9ae6-50dcb3ce6ee8

position:46484596:1
position: 46484596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46484795:1
position: 46484795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc9c0c6a-4759-4170-9ae6-50dcb3ce6ee8
SIO_000300: 1
SIO_000628: feature:46484596-46484795:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47523174..47523373
location: region:47523174-47523373:1
BFO_0000051: feature:47523174-47523373:1:region
SIO_000974: bf5686ef-dfe2-4f92-9c3c-42a3adc0a854

position:47523174:1
position: 47523174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47523373:1
position: 47523373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bf5686ef-dfe2-4f92-9c3c-42a3adc0a854
SIO_000300: 1
SIO_000628: feature:47523174-47523373:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48363592..48363791
location: region:48363592-48363791:1
BFO_0000051: feature:48363592-48363791:1:region
SIO_000974: 072c5a6e-6875-4ecc-b1b7-7e76d240df97

position:48363592:1
position: 48363592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48363791:1
position: 48363791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

072c5a6e-6875-4ecc-b1b7-7e76d240df97
SIO_000300: 1
SIO_000628: feature:48363592-48363791:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53164471..53164670
location: region:53164471-53164670:1
BFO_0000051: feature:53164471-53164670:1:region
SIO_000974: ab286163-cfbd-40a6-a9d3-84727b3b3c46

position:53164471:1
position: 53164471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53164670:1
position: 53164670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab286163-cfbd-40a6-a9d3-84727b3b3c46
SIO_000300: 1
SIO_000628: feature:53164471-53164670:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61322267..61322466
location: region:61322267-61322466:1
BFO_0000051: feature:61322267-61322466:1:region
SIO_000974: c89c185a-f7d2-46fb-bc83-e105414d1907

position:61322267:1
position: 61322267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61322466:1
position: 61322466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c89c185a-f7d2-46fb-bc83-e105414d1907
SIO_000300: 1
SIO_000628: feature:61322267-61322466:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61774891..61775090
location: region:61774891-61775090:1
BFO_0000051: feature:61774891-61775090:1:region
SIO_000974: 4b08c977-72ae-4b82-a84a-485b15855313

position:61774891:1
position: 61774891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61775090:1
position: 61775090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b08c977-72ae-4b82-a84a-485b15855313
SIO_000300: 1
SIO_000628: feature:61774891-61775090:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61805565..61805764
location: region:61805565-61805764:1
BFO_0000051: feature:61805565-61805764:1:region
SIO_000974: bc1f26ed-c27e-438d-ae1c-9b2228db24b8

position:61805565:1
position: 61805565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61805764:1
position: 61805764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc1f26ed-c27e-438d-ae1c-9b2228db24b8
SIO_000300: 1
SIO_000628: feature:61805565-61805764:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64297878..64298077
location: region:64297878-64298077:1
BFO_0000051: feature:64297878-64298077:1:region
SIO_000974: 72031f91-9d9a-4212-bb99-a3457d5427af

position:64297878:1
position: 64297878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64298077:1
position: 64298077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72031f91-9d9a-4212-bb99-a3457d5427af
SIO_000300: 1
SIO_000628: feature:64297878-64298077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64369449..64369648
location: region:64369449-64369648:1
BFO_0000051: feature:64369449-64369648:1:region
SIO_000974: dce1eb2f-e651-47f9-83c7-1ffc88a5d565

position:64369449:1
position: 64369449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64369648:1
position: 64369648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dce1eb2f-e651-47f9-83c7-1ffc88a5d565
SIO_000300: 1
SIO_000628: feature:64369449-64369648:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64409123..64409322
location: region:64409123-64409322:1
BFO_0000051: feature:64409123-64409322:1:region
SIO_000974: df765bd0-ab63-4372-b8ba-c383c7355d28

position:64409123:1
position: 64409123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64409322:1
position: 64409322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df765bd0-ab63-4372-b8ba-c383c7355d28
SIO_000300: 1
SIO_000628: feature:64409123-64409322:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64645376..64645575
location: region:64645376-64645575:1
BFO_0000051: feature:64645376-64645575:1:region
SIO_000974: 9a0990f5-1988-4657-b226-e5b8e458b879

position:64645376:1
position: 64645376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64645575:1
position: 64645575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a0990f5-1988-4657-b226-e5b8e458b879
SIO_000300: 1
SIO_000628: feature:64645376-64645575:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 66963383..66963582
location: region:66963383-66963582:1
BFO_0000051: feature:66963383-66963582:1:region
SIO_000974: 9279ef44-6c52-4a81-b6ca-861a7e1b67b8

position:66963383:1
position: 66963383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66963582:1
position: 66963582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:66963383-66963582:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 67716670..67716869
location: region:67716670-67716869:1
BFO_0000051: feature:67716670-67716869:1:region
SIO_000974: d9338920-4904-4136-bd1a-aed85d251e3c

position:67716670:1
position: 67716670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67716869:1
position: 67716869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9338920-4904-4136-bd1a-aed85d251e3c
SIO_000300: 1
SIO_000628: feature:67716670-67716869:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 68032509..68032708
location: region:68032509-68032708:1
BFO_0000051: feature:68032509-68032708:1:region
SIO_000974: 9d405d4b-8b7c-4a68-a873-7b6961cc3e54

position:68032509:1
position: 68032509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68032708:1
position: 68032708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d405d4b-8b7c-4a68-a873-7b6961cc3e54
SIO_000300: 1
SIO_000628: feature:68032509-68032708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 68820494..68820693
location: region:68820494-68820693:1
BFO_0000051: feature:68820494-68820693:1:region
SIO_000974: a2270efd-4f4a-4e63-b11a-a1549b004403

position:68820494:1
position: 68820494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68820693:1
position: 68820693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2270efd-4f4a-4e63-b11a-a1549b004403
SIO_000300: 1
SIO_000628: feature:68820494-68820693:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 69276292..69276491
location: region:69276292-69276491:1
BFO_0000051: feature:69276292-69276491:1:region
SIO_000974: a498bd78-b3bf-476d-a45e-ef3f68cb2e38

position:69276292:1
position: 69276292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69276491:1
position: 69276491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000051: feature:118548562-118548761:1:region
SIO_000974: ca108260-e164-4541-a6bd-d6204cb417d2

position:118548562:1
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position:118548761:1
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reference: sequence
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ca108260-e164-4541-a6bd-d6204cb417d2
SIO_000300: 1
SIO_000628: feature:118548562-118548761:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:119125993-119126192:1
BFO_0000051: feature:119125993-119126192:1:region
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SIO_000300: 1
SIO_000628: feature:119125993-119126192:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:119325007-119325206:1:region
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SIO_000300: 1
SIO_000628: feature:119325007-119325206:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:119556890-119557089:1:region
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SIO_000300: 1
SIO_000628: feature:119556890-119557089:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:119626691-119626890:1:region
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SIO_000300: 1
SIO_000628: feature:119626691-119626890:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:119759740-119759939:1:region
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SIO_000300: 1
SIO_000628: feature:119759740-119759939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:123358364-123358563:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:123358364-123358563:1:region

assembly_gap
type: Assembly Gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:125207530-125207729:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:125207530-125207729:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:128148166-128148365:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:128148166-128148365:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:130121474-130121673:1:region
SIO_000974: d0b676ef-aaf6-4d34-9d59-208db463b821

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SIO_000300: 1
SIO_000628: feature:130121474-130121673:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:130294469-130294668:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:130294469-130294668:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:130343337-130343536:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:130343337-130343536:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:130805392-130805591:1
BFO_0000051: feature:130805392-130805591:1:region
SIO_000974: b31541ca-0848-4350-849e-d49a6faf8857

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reference: sequence
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SIO_000300: 1
SIO_000628: feature:130805392-130805591:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:131959395-131959594:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:131959395-131959594:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:132308403-132308602:1:region
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:132308403-132308602:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:133430686-133430885:1:region
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SIO_000300: 1
SIO_000628: feature:133430686-133430885:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:134961595-134961794:1:region
SIO_000974: ba54d1cb-ca0d-4b35-93c9-306535faef0e

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reference: sequence
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SIO_000300: 1
SIO_000628: feature:134961595-134961794:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:137837158-137837357:1:region
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SIO_000300: 1
SIO_000628: feature:137837158-137837357:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:139926247-139926446:1
BFO_0000051: feature:139926247-139926446:1:region
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SIO_000300: 1
SIO_000628: feature:139926247-139926446:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:141107381-141107580:1
BFO_0000051: feature:141107381-141107580:1:region
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SIO_000300: 1
SIO_000628: feature:141107381-141107580:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:142185870-142186069:1:region
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SIO_000300: 1
SIO_000628: feature:142185870-142186069:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:142304070-142304269:1:region
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SIO_000300: 1
SIO_000628: feature:142304070-142304269:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:142566352-142566551:1:region
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SIO_000300: 1
SIO_000628: feature:142566352-142566551:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:144997299-144997498:1:region
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SIO_000300: 1
SIO_000628: feature:144997299-144997498:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:145205475-145205674:1:region
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SIO_000300: 1
SIO_000628: feature:145205475-145205674:1:region

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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:147899346-147899545:1:region
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SIO_000300: 1
SIO_000628: feature:147899346-147899545:1:region

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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:148319907-148320106:1:region
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SIO_000300: 1
SIO_000628: feature:148319907-148320106:1:region

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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:148544836-148545035:1:region
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SIO_000300: 1
SIO_000628: feature:148544836-148545035:1:region

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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:148828862-148829061:1:region
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SIO_000300: 1
SIO_000628: feature:148828862-148829061:1:region

assembly_gap
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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:149119876-149120075:1:region
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SIO_000300: 1
SIO_000628: feature:149119876-149120075:1:region

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RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:149976349-149976548:1:region
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 206872179..206872378
location: region:206872179-206872378:1
BFO_0000051: feature:206872179-206872378:1:region
SIO_000974: fc2208fe-c83b-4e27-a912-abe83986b4e1

position:206872179:1
position: 206872179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206872378:1
position: 206872378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc2208fe-c83b-4e27-a912-abe83986b4e1
SIO_000300: 1
SIO_000628: feature:206872179-206872378:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 207106101..207106300
location: region:207106101-207106300:1
BFO_0000051: feature:207106101-207106300:1:region
SIO_000974: c5f9d0d5-ef9f-414e-a29d-7dd81fa2cd02

position:207106101:1
position: 207106101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207106300:1
position: 207106300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5f9d0d5-ef9f-414e-a29d-7dd81fa2cd02
SIO_000300: 1
SIO_000628: feature:207106101-207106300:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 212023702..212023901
location: region:212023702-212023901:1
BFO_0000051: feature:212023702-212023901:1:region
SIO_000974: 38c8e118-b518-4e01-b06d-6a04323a6526

position:212023702:1
position: 212023702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212023901:1
position: 212023901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38c8e118-b518-4e01-b06d-6a04323a6526
SIO_000300: 1
SIO_000628: feature:212023702-212023901:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 230378668..230378867
location: region:230378668-230378867:1
BFO_0000051: feature:230378668-230378867:1:region
SIO_000974: eae0b7b6-1b6a-40da-8216-b48dc4e09207

position:230378668:1
position: 230378668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230378867:1
position: 230378867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eae0b7b6-1b6a-40da-8216-b48dc4e09207
SIO_000300: 1
SIO_000628: feature:230378668-230378867:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 236024018..236024217
location: region:236024018-236024217:1
BFO_0000051: feature:236024018-236024217:1:region
SIO_000974: 721eb1e9-2da6-432b-b9fa-7bb74522c4b8

position:236024018:1
position: 236024018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236024217:1
position: 236024217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

721eb1e9-2da6-432b-b9fa-7bb74522c4b8
SIO_000300: 1
SIO_000628: feature:236024018-236024217:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 240651353..240651552
location: region:240651353-240651552:1
BFO_0000051: feature:240651353-240651552:1:region
SIO_000974: f8765945-0b8e-4eac-a0cd-43491b256626

position:240651353:1
position: 240651353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:240651552:1
position: 240651552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f8765945-0b8e-4eac-a0cd-43491b256626
SIO_000300: 1
SIO_000628: feature:240651353-240651552:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 250785738..250785937
location: region:250785738-250785937:1
BFO_0000051: feature:250785738-250785937:1:region
SIO_000974: 692a38a6-7c11-4c31-a6e1-776c422bba5a

position:250785738:1
position: 250785738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250785937:1
position: 250785937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

692a38a6-7c11-4c31-a6e1-776c422bba5a
SIO_000300: 1
SIO_000628: feature:250785738-250785937:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 257901789..257901988
location: region:257901789-257901988:1
BFO_0000051: feature:257901789-257901988:1:region
SIO_000974: f6d4598f-2083-4258-85b4-3d22aeaff62c

position:257901789:1
position: 257901789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257901988:1
position: 257901988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6d4598f-2083-4258-85b4-3d22aeaff62c
SIO_000300: 1
SIO_000628: feature:257901789-257901988:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 260053916..260054115
location: region:260053916-260054115:1
BFO_0000051: feature:260053916-260054115:1:region
SIO_000974: 956dc4d6-d568-4cd8-9bfd-20adc4fb3565

position:260053916:1
position: 260053916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260054115:1
position: 260054115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:260053916-260054115:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 260524424..260524623
location: region:260524424-260524623:1
BFO_0000051: feature:260524424-260524623:1:region
SIO_000974: b44f0cb2-ff16-4ce0-9ae3-7c3faee589fe

position:260524424:1
position: 260524424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260524623:1
position: 260524623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b44f0cb2-ff16-4ce0-9ae3-7c3faee589fe
SIO_000300: 1
SIO_000628: feature:260524424-260524623:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 267985624..267985823
location: region:267985624-267985823:1
BFO_0000051: feature:267985624-267985823:1:region
SIO_000974: 4c43d245-e1e6-4610-900d-5d9afa39b23a

position:267985624:1
position: 267985624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267985823:1
position: 267985823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c43d245-e1e6-4610-900d-5d9afa39b23a
SIO_000300: 1
SIO_000628: feature:267985624-267985823:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 268389769..268389968
location: region:268389769-268389968:1
BFO_0000051: feature:268389769-268389968:1:region
SIO_000974: 38907e8e-32f4-4128-ad67-ea86ebc4fbe8

position:268389769:1
position: 268389769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268389968:1
position: 268389968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38907e8e-32f4-4128-ad67-ea86ebc4fbe8
SIO_000300: 1
SIO_000628: feature:268389769-268389968:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 276518969..276519168
location: region:276518969-276519168:1
BFO_0000051: feature:276518969-276519168:1:region
SIO_000974: 9f963c5a-c7a9-42ed-ab6c-8ac2c70498b0

position:276518969:1
position: 276518969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276519168:1
position: 276519168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f963c5a-c7a9-42ed-ab6c-8ac2c70498b0
SIO_000300: 1
SIO_000628: feature:276518969-276519168:1:region

Leucozona laternaria genome assembly, chromosome: 2.
type: Entry
definition: Leucozona laternaria genome assembly, chromosome: 2.
sequence version: OW026367.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 134260815
topology: linear
RO_0000086: SO_0000987
location: 1..134260815
location: region:1-134260815:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134260815:1
position: 134260815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-134260815:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 699578..699777
location: region:699578-699777:1
BFO_0000051: feature:699578-699777:1:region
SIO_000974: 8db25ca5-4ea1-45c0-b80c-380d35abad4b

position:699578:1
position: 699578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699777:1
position: 699777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8db25ca5-4ea1-45c0-b80c-380d35abad4b
SIO_000300: 1
SIO_000628: feature:699578-699777:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7210987..7211186
location: region:7210987-7211186:1
BFO_0000051: feature:7210987-7211186:1:region
SIO_000974: faf92a35-2cf8-4062-9373-fe3d3b283c3d

position:7210987:1
position: 7210987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7211186:1
position: 7211186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

faf92a35-2cf8-4062-9373-fe3d3b283c3d
SIO_000300: 1
SIO_000628: feature:7210987-7211186:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24528914..24529113
location: region:24528914-24529113:1
BFO_0000051: feature:24528914-24529113:1:region
SIO_000974: 7263cce9-f1e4-41a4-a008-64bd08d33f7d

position:24528914:1
position: 24528914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24529113:1
position: 24529113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7263cce9-f1e4-41a4-a008-64bd08d33f7d
SIO_000300: 1
SIO_000628: feature:24528914-24529113:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47626850..47627049
location: region:47626850-47627049:1
BFO_0000051: feature:47626850-47627049:1:region
SIO_000974: 1bfaa392-f1ae-47c5-8866-3cd79721bfc3

position:47626850:1
position: 47626850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47627049:1
position: 47627049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1bfaa392-f1ae-47c5-8866-3cd79721bfc3
SIO_000300: 1
SIO_000628: feature:47626850-47627049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57591872..57592071
location: region:57591872-57592071:1
BFO_0000051: feature:57591872-57592071:1:region
SIO_000974: f2df9db5-e2e0-4909-b9e2-b050ace758de

position:57591872:1
position: 57591872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57592071:1
position: 57592071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2df9db5-e2e0-4909-b9e2-b050ace758de
SIO_000300: 1
SIO_000628: feature:57591872-57592071:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58595834..58596033
location: region:58595834-58596033:1
BFO_0000051: feature:58595834-58596033:1:region
SIO_000974: c6f52e52-144e-4e6a-aa52-a569ba0f79e8

position:58595834:1
position: 58595834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58596033:1
position: 58596033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c6f52e52-144e-4e6a-aa52-a569ba0f79e8
SIO_000300: 1
SIO_000628: feature:58595834-58596033:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 65031857..65032056
location: region:65031857-65032056:1
BFO_0000051: feature:65031857-65032056:1:region
SIO_000974: 6fba066b-a9bc-427d-a54e-05347c8cf1e1

position:65031857:1
position: 65031857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65032056:1
position: 65032056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fba066b-a9bc-427d-a54e-05347c8cf1e1
SIO_000300: 1
SIO_000628: feature:65031857-65032056:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 67774495..67774694
location: region:67774495-67774694:1
BFO_0000051: feature:67774495-67774694:1:region
SIO_000974: 5c20556b-4655-4cad-a4d4-24e84ee1a797

position:67774495:1
position: 67774495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67774694:1
position: 67774694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5c20556b-4655-4cad-a4d4-24e84ee1a797
SIO_000300: 1
SIO_000628: feature:67774495-67774694:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 72605126..72605325
location: region:72605126-72605325:1
BFO_0000051: feature:72605126-72605325:1:region
SIO_000974: c3b34564-db83-46f1-b705-f768fb70d950

position:72605126:1
position: 72605126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72605325:1
position: 72605325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3b34564-db83-46f1-b705-f768fb70d950
SIO_000300: 1
SIO_000628: feature:72605126-72605325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 83880304..83880503
location: region:83880304-83880503:1
BFO_0000051: feature:83880304-83880503:1:region
SIO_000974: 0c9f9d30-094a-43d3-a4a1-b37f4b002cd8

position:83880304:1
position: 83880304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83880503:1
position: 83880503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c9f9d30-094a-43d3-a4a1-b37f4b002cd8
SIO_000300: 1
SIO_000628: feature:83880304-83880503:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 85436820..85437019
location: region:85436820-85437019:1
BFO_0000051: feature:85436820-85437019:1:region
SIO_000974: 3c1433a1-1975-45c4-83f3-5c38c0dd1e0e

position:85436820:1
position: 85436820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85437019:1
position: 85437019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c1433a1-1975-45c4-83f3-5c38c0dd1e0e
SIO_000300: 1
SIO_000628: feature:85436820-85437019:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 92915946..92916145
location: region:92915946-92916145:1
BFO_0000051: feature:92915946-92916145:1:region
SIO_000974: b680fa2c-f21d-41b7-9610-efdd0c1bb4f3

position:92915946:1
position: 92915946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92916145:1
position: 92916145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b680fa2c-f21d-41b7-9610-efdd0c1bb4f3
SIO_000300: 1
SIO_000628: feature:92915946-92916145:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 93497194..93497393
location: region:93497194-93497393:1
BFO_0000051: feature:93497194-93497393:1:region
SIO_000974: f33c1bbf-7fcb-4651-bf14-c4e454e8513f

position:93497194:1
position: 93497194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93497393:1
position: 93497393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f33c1bbf-7fcb-4651-bf14-c4e454e8513f
SIO_000300: 1
SIO_000628: feature:93497194-93497393:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 94785166..94785365
location: region:94785166-94785365:1
BFO_0000051: feature:94785166-94785365:1:region
SIO_000974: 5e323783-c5ed-4482-b96b-81a89dba6a9e

position:94785166:1
position: 94785166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94785365:1
position: 94785365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e323783-c5ed-4482-b96b-81a89dba6a9e
SIO_000300: 1
SIO_000628: feature:94785166-94785365:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 101046877..101047076
location: region:101046877-101047076:1
BFO_0000051: feature:101046877-101047076:1:region
SIO_000974: 5bbfd294-1b5b-41b2-9e1f-9b17135fc84f

position:101046877:1
position: 101046877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101047076:1
position: 101047076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5bbfd294-1b5b-41b2-9e1f-9b17135fc84f
SIO_000300: 1
SIO_000628: feature:101046877-101047076:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 109174485..109174684
location: region:109174485-109174684:1
BFO_0000051: feature:109174485-109174684:1:region
SIO_000974: 6617bc6b-fb81-4353-b025-163743d55b73

position:109174485:1
position: 109174485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109174684:1
position: 109174684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6617bc6b-fb81-4353-b025-163743d55b73
SIO_000300: 1
SIO_000628: feature:109174485-109174684:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 114868528..114868727
location: region:114868528-114868727:1
BFO_0000051: feature:114868528-114868727:1:region
SIO_000974: cf9523e5-aa73-4947-8d20-c847bcfdca7b

position:114868528:1
position: 114868528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114868727:1
position: 114868727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf9523e5-aa73-4947-8d20-c847bcfdca7b
SIO_000300: 1
SIO_000628: feature:114868528-114868727:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 132200247..132200446
location: region:132200247-132200446:1
BFO_0000051: feature:132200247-132200446:1:region
SIO_000974: f1181f67-72e0-4ccf-97ba-544e94685bbe

position:132200247:1
position: 132200247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132200446:1
position: 132200446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1181f67-72e0-4ccf-97ba-544e94685bbe
SIO_000300: 1
SIO_000628: feature:132200247-132200446:1:region

Leucozona laternaria genome assembly, chromosome: 3.
type: Entry
definition: Leucozona laternaria genome assembly, chromosome: 3.
sequence version: OW026368.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 115525467
topology: linear
RO_0000086: SO_0000987
location: 1..115525467
location: region:1-115525467:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:115525467:1
position: 115525467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-115525467:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6051011..6051210
location: region:6051011-6051210:1
BFO_0000051: feature:6051011-6051210:1:region
SIO_000974: e8fdd8fc-826e-452a-ad23-70cbdde6f368

position:6051011:1
position: 6051011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6051210:1
position: 6051210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8fdd8fc-826e-452a-ad23-70cbdde6f368
SIO_000300: 1
SIO_000628: feature:6051011-6051210:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6773501..6773700
location: region:6773501-6773700:1
BFO_0000051: feature:6773501-6773700:1:region
SIO_000974: bb7bfb9d-614f-40bc-86f9-8957a703cb42

position:6773501:1
position: 6773501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6773700:1
position: 6773700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb7bfb9d-614f-40bc-86f9-8957a703cb42
SIO_000300: 1
SIO_000628: feature:6773501-6773700:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22816512..22816711
location: region:22816512-22816711:1
BFO_0000051: feature:22816512-22816711:1:region
SIO_000974: eb007f2b-050f-4e23-906a-a82503a19e00

position:22816512:1
position: 22816512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22816711:1
position: 22816711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb007f2b-050f-4e23-906a-a82503a19e00
SIO_000300: 1
SIO_000628: feature:22816512-22816711:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24594454..24594653
location: region:24594454-24594653:1
BFO_0000051: feature:24594454-24594653:1:region
SIO_000974: 6c03f7e6-c0a2-4efd-a51a-c38091e6458c

position:24594454:1
position: 24594454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24594653:1
position: 24594653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c03f7e6-c0a2-4efd-a51a-c38091e6458c
SIO_000300: 1
SIO_000628: feature:24594454-24594653:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33652342..33652541
location: region:33652342-33652541:1
BFO_0000051: feature:33652342-33652541:1:region
SIO_000974: efdbff46-abc5-4f00-ba46-692c0ea0b6c7

position:33652342:1
position: 33652342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33652541:1
position: 33652541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efdbff46-abc5-4f00-ba46-692c0ea0b6c7
SIO_000300: 1
SIO_000628: feature:33652342-33652541:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48527587..48527786
location: region:48527587-48527786:1
BFO_0000051: feature:48527587-48527786:1:region
SIO_000974: 7856330c-cde0-4ecf-98c0-b7bda316c841

position:48527587:1
position: 48527587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48527786:1
position: 48527786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7856330c-cde0-4ecf-98c0-b7bda316c841
SIO_000300: 1
SIO_000628: feature:48527587-48527786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61612191..61612390
location: region:61612191-61612390:1
BFO_0000051: feature:61612191-61612390:1:region
SIO_000974: 5e9345a1-28d3-4f2d-ab82-68b89620c7ea

position:61612191:1
position: 61612191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61612390:1
position: 61612390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e9345a1-28d3-4f2d-ab82-68b89620c7ea
SIO_000300: 1
SIO_000628: feature:61612191-61612390:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 87160620..87160819
location: region:87160620-87160819:1
BFO_0000051: feature:87160620-87160819:1:region
SIO_000974: 867ae016-49c7-4c67-ab12-3e1e8be5ac5f

position:87160620:1
position: 87160620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87160819:1
position: 87160819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

867ae016-49c7-4c67-ab12-3e1e8be5ac5f
SIO_000300: 1
SIO_000628: feature:87160620-87160819:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 90601763..90601962
location: region:90601763-90601962:1
BFO_0000051: feature:90601763-90601962:1:region
SIO_000974: a7bac07a-871e-40e3-b5f3-348b8cf64402

position:90601763:1
position: 90601763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90601962:1
position: 90601962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a7bac07a-871e-40e3-b5f3-348b8cf64402
SIO_000300: 1
SIO_000628: feature:90601763-90601962:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 92752427..92752626
location: region:92752427-92752626:1
BFO_0000051: feature:92752427-92752626:1:region
SIO_000974: b8464cf1-c497-4c18-a8b1-f490651853b4

position:92752427:1
position: 92752427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92752626:1
position: 92752626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8464cf1-c497-4c18-a8b1-f490651853b4
SIO_000300: 1
SIO_000628: feature:92752427-92752626:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 99686414..99686613
location: region:99686414-99686613:1
BFO_0000051: feature:99686414-99686613:1:region
SIO_000974: 59321a12-7d82-46f9-b4ad-ebfad4e9fdd8

position:99686414:1
position: 99686414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99686613:1
position: 99686613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59321a12-7d82-46f9-b4ad-ebfad4e9fdd8
SIO_000300: 1
SIO_000628: feature:99686414-99686613:1:region

Leucozona laternaria genome assembly, chromosome: 4.
type: Entry
definition: Leucozona laternaria genome assembly, chromosome: 4.
sequence version: OW026369.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 69176382
topology: linear
RO_0000086: SO_0000987
location: 1..69176382
location: region:1-69176382:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69176382:1
position: 69176382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-69176382:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4781153..4781352
location: region:4781153-4781352:1
BFO_0000051: feature:4781153-4781352:1:region
SIO_000974: b7c7cbee-e4b3-4156-a1d8-0e45111194c5

position:4781153:1
position: 4781153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4781352:1
position: 4781352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7c7cbee-e4b3-4156-a1d8-0e45111194c5
SIO_000300: 1
SIO_000628: feature:4781153-4781352:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5052776..5052975
location: region:5052776-5052975:1
BFO_0000051: feature:5052776-5052975:1:region
SIO_000974: 32cc4d76-caae-4fce-8f62-0b1885dc40b4

position:5052776:1
position: 5052776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5052975:1
position: 5052975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32cc4d76-caae-4fce-8f62-0b1885dc40b4
SIO_000300: 1
SIO_000628: feature:5052776-5052975:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8699976..8700175
location: region:8699976-8700175:1
BFO_0000051: feature:8699976-8700175:1:region
SIO_000974: d9340773-7767-4e5e-9529-321d6733e0b8

position:8699976:1
position: 8699976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8700175:1
position: 8700175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9340773-7767-4e5e-9529-321d6733e0b8
SIO_000300: 1
SIO_000628: feature:8699976-8700175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16672722..16672921
location: region:16672722-16672921:1
BFO_0000051: feature:16672722-16672921:1:region
SIO_000974: 4d19fb05-cd14-4d49-8cc7-fef8e7e83c60

position:16672722:1
position: 16672722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16672921:1
position: 16672921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4d19fb05-cd14-4d49-8cc7-fef8e7e83c60
SIO_000300: 1
SIO_000628: feature:16672722-16672921:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23208602..23208801
location: region:23208602-23208801:1
BFO_0000051: feature:23208602-23208801:1:region
SIO_000974: 803be37d-f8df-4383-b94a-eaf56f60d98c

position:23208602:1
position: 23208602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23208801:1
position: 23208801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

803be37d-f8df-4383-b94a-eaf56f60d98c
SIO_000300: 1
SIO_000628: feature:23208602-23208801:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30855361..30855560
location: region:30855361-30855560:1
BFO_0000051: feature:30855361-30855560:1:region
SIO_000974: 65e41d3f-e61d-4785-8bd4-67ac3d6539dc

position:30855361:1
position: 30855361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30855560:1
position: 30855560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65e41d3f-e61d-4785-8bd4-67ac3d6539dc
SIO_000300: 1
SIO_000628: feature:30855361-30855560:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37812883..37813082
location: region:37812883-37813082:1
BFO_0000051: feature:37812883-37813082:1:region
SIO_000974: 0cdb30b6-8b67-489c-bcbe-fe2484b7728f

position:37812883:1
position: 37812883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37813082:1
position: 37813082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0cdb30b6-8b67-489c-bcbe-fe2484b7728f
SIO_000300: 1
SIO_000628: feature:37812883-37813082:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39056069..39056268
location: region:39056069-39056268:1
BFO_0000051: feature:39056069-39056268:1:region
SIO_000974: 53ca16d9-9667-4b79-acd8-bb8afff4d4fe

position:39056069:1
position: 39056069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39056268:1
position: 39056268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53ca16d9-9667-4b79-acd8-bb8afff4d4fe
SIO_000300: 1
SIO_000628: feature:39056069-39056268:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40064181..40064380
location: region:40064181-40064380:1
BFO_0000051: feature:40064181-40064380:1:region
SIO_000974: b0f4c03a-8289-4698-a8f1-73e0a8e52092

position:40064181:1
position: 40064181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40064380:1
position: 40064380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0f4c03a-8289-4698-a8f1-73e0a8e52092
SIO_000300: 1
SIO_000628: feature:40064181-40064380:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41726377..41726576
location: region:41726377-41726576:1
BFO_0000051: feature:41726377-41726576:1:region
SIO_000974: 9da37af9-1742-4957-8111-23f7e66991b2

position:41726377:1
position: 41726377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41726576:1
position: 41726576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9da37af9-1742-4957-8111-23f7e66991b2
SIO_000300: 1
SIO_000628: feature:41726377-41726576:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42930442..42930641
location: region:42930442-42930641:1
BFO_0000051: feature:42930442-42930641:1:region
SIO_000974: ad9aff1d-3ed0-4d47-8c67-e495ea17843b

position:42930442:1
position: 42930442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42930641:1
position: 42930641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad9aff1d-3ed0-4d47-8c67-e495ea17843b
SIO_000300: 1
SIO_000628: feature:42930442-42930641:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50980349..50980548
location: region:50980349-50980548:1
BFO_0000051: feature:50980349-50980548:1:region
SIO_000974: 8a9faf36-51fa-4044-bae7-0bc41b96d8df

position:50980349:1
position: 50980349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50980548:1
position: 50980548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a9faf36-51fa-4044-bae7-0bc41b96d8df
SIO_000300: 1
SIO_000628: feature:50980349-50980548:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63413111..63413310
location: region:63413111-63413310:1
BFO_0000051: feature:63413111-63413310:1:region
SIO_000974: bfc64a47-395e-4b75-bbf7-86adf0a92c6c

position:63413111:1
position: 63413111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63413310:1
position: 63413310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bfc64a47-395e-4b75-bbf7-86adf0a92c6c
SIO_000300: 1
SIO_000628: feature:63413111-63413310:1:region

Leucozona laternaria genome assembly, chromosome: X.
type: Entry
definition: Leucozona laternaria genome assembly, chromosome: X.
sequence version: OW026370.1
sequence date: 2022-10-12
sequence: sequence
division: INV
source: Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 9571910
topology: linear
RO_0000086: SO_0000987
location: 1..9571910
location: region:1-9571910:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9571910:1
position: 9571910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9571910:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
chromosome: X
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1880599..1880798
location: region:1880599-1880798:1
BFO_0000051: feature:1880599-1880798:1:region
SIO_000974: 58b5f893-3013-49cd-9ab9-f7f3c90b1fd3

position:1880599:1
position: 1880599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1880798:1
position: 1880798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

58b5f893-3013-49cd-9ab9-f7f3c90b1fd3
SIO_000300: 1
SIO_000628: feature:1880599-1880798:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2414994..2415193
location: region:2414994-2415193:1
BFO_0000051: feature:2414994-2415193:1:region
SIO_000974: 49909467-330e-4bb8-aa21-7735c2133bd6

position:2414994:1
position: 2414994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2415193:1
position: 2415193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

49909467-330e-4bb8-aa21-7735c2133bd6
SIO_000300: 1
SIO_000628: feature:2414994-2415193:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7536187..7536386
location: region:7536187-7536386:1
BFO_0000051: feature:7536187-7536386:1:region
SIO_000974: 2467b9c7-50b4-49dd-a5a8-96eb545d3d9b

position:7536187:1
position: 7536187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7536386:1
position: 7536386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2467b9c7-50b4-49dd-a5a8-96eb545d3d9b
SIO_000300: 1
SIO_000628: feature:7536187-7536386:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8462228..8462427
location: region:8462228-8462427:1
BFO_0000051: feature:8462228-8462427:1:region
SIO_000974: 0fb5f24f-7517-4eb2-8b3e-d7fb8cb6a2c1

position:8462228:1
position: 8462228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8462427:1
position: 8462427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0fb5f24f-7517-4eb2-8b3e-d7fb8cb6a2c1
SIO_000300: 1
SIO_000628: feature:8462228-8462427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 323312
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8971146..8971345
location: region:8971146-8971345:1
BFO_0000051: feature:8971146-8971345:1:region
SIO_000974: 71d9dcdc-9ff6-4a0b-bfa3-f4f1d928a47c

position:8971146:1
position: 8971146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8971345:1
position: 8971345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

71d9dcdc-9ff6-4a0b-bfa3-f4f1d928a47c
SIO_000300: 1
SIO_000628: feature:8971146-8971345:1:region

Leucozona laternaria genome assembly, organelle: mitochondrion.
type: Entry
definition: Leucozona laternaria genome assembly, organelle: mitochondrion.
sequence version: OW026371.2
sequence date: 2022-10-12
sequence: sequence
division: INV
source: mitochondrion Leucozona laternaria
organism: Leucozona laternaria
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Leucozona.
reference: 1
reference: 2
comment: The assembly idLeuLate1.2 is based on 25x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the primary assembly\nwas\nanalysed and manually improved using rapid curation.\nChromosome-scale\nscaffolds are named by synteny based on Chrysotoxum bicinctum\n(flies)\nGCA_911387755.1.

sequence
subclass of: SO_0000001
sequence length: 18293
topology: linear
RO_0000086: SO_0000987
location: 1..18293
location: region:1-18293:1
RO_0002162: 323312

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (11-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18293:1
position: 18293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18293:1:source
BFO_0000050: sequence
organism: Leucozona laternaria
organelle: mitochondrion
mol type: genomic DNA

Diarsia rubi genome assembly, chromosome: Z.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: Z.
sequence version: OW026411.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32634975
topology: linear
RO_0000086: SO_0000987
location: 1..32634975
location: region:1-32634975:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32634975:1
position: 32634975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32634975:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: Z
mol type: genomic DNA

987925
type: Taxonomy
SIO_000068: taxonomy

Diarsia rubi genome assembly, chromosome: 1.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: 1.
sequence version: OW026412.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24774880
topology: linear
RO_0000086: SO_0000987
location: 1..24774880
location: region:1-24774880:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24774880:1
position: 24774880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24774880:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: 1
mol type: genomic DNA

Diarsia rubi genome assembly, chromosome: 2.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: 2.
sequence version: OW026413.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24634593
topology: linear
RO_0000086: SO_0000987
location: 1..24634593
location: region:1-24634593:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24634593:1
position: 24634593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24634593:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: 2
mol type: genomic DNA

Diarsia rubi genome assembly, chromosome: 3.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: 3.
sequence version: OW026414.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23715147
topology: linear
RO_0000086: SO_0000987
location: 1..23715147
location: region:1-23715147:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23715147:1
position: 23715147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23715147:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: 3
mol type: genomic DNA

Diarsia rubi genome assembly, chromosome: 4.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: 4.
sequence version: OW026415.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22993970
topology: linear
RO_0000086: SO_0000987
location: 1..22993970
location: region:1-22993970:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22993970:1
position: 22993970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22993970:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: 4
mol type: genomic DNA

Diarsia rubi genome assembly, chromosome: 5.
type: Entry
definition: Diarsia rubi genome assembly, chromosome: 5.
sequence version: OW026416.1
sequence date: 2022-03-08
sequence: sequence
division: INV
source: Diarsia rubi
organism: Diarsia rubi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Diarsia.
reference: 1
comment: The assembly ilDiaRubi1.1 is based on 33x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22834243
topology: linear
RO_0000086: SO_0000987
location: 1..22834243
location: region:1-22834243:1
RO_0002162: 987925

1
journal: Submitted (26-FEB-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22834243:1
position: 22834243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22834243:1:source
BFO_0000050: sequence
organism: Diarsia rubi
chromosome: 5
mol type: genomic DNA