Glyphotaelius pellucidus genome assembly, chromosome: 3.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 3.
sequence version: OW386539.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 45545766
topology: linear
RO_0000086: SO_0000987
location: 1..45545766
location: region:1-45545766:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45545766:1
position: 45545766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45545766:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 3
mol type: genomic DNA

1271742
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6821347..6821546
location: region:6821347-6821546:1
BFO_0000051: feature:6821347-6821546:1:region
SIO_000974: 45b18de4-bb50-4c23-9c78-620281a05c6c

position:6821347:1
position: 6821347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6821546:1
position: 6821546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6821347-6821546:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21284547..21284746
location: region:21284547-21284746:1
BFO_0000051: feature:21284547-21284746:1:region
SIO_000974: 817c521c-ba9b-4cf3-807d-a4a387337472

position:21284547:1
position: 21284547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21284746:1
position: 21284746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:21284547-21284746:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21890747..21890946
location: region:21890747-21890946:1
BFO_0000051: feature:21890747-21890946:1:region
SIO_000974: a443e2a3-56e9-40d6-9e7d-76eb6f9f5b63

position:21890747:1
position: 21890747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21890946:1
position: 21890946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:21890747-21890946:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22588324..22588523
location: region:22588324-22588523:1
BFO_0000051: feature:22588324-22588523:1:region
SIO_000974: 78919a77-50ce-4fd8-9fd2-303fc5119daf

position:22588324:1
position: 22588324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22588523:1
position: 22588523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

78919a77-50ce-4fd8-9fd2-303fc5119daf
SIO_000300: 1
SIO_000628: feature:22588324-22588523:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33247738..33247937
location: region:33247738-33247937:1
BFO_0000051: feature:33247738-33247937:1:region
SIO_000974: dde66293-fa48-4b5b-a2eb-a162ae369f9d

position:33247738:1
position: 33247738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33247937:1
position: 33247937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dde66293-fa48-4b5b-a2eb-a162ae369f9d
SIO_000300: 1
SIO_000628: feature:33247738-33247937:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38720843..38721042
location: region:38720843-38721042:1
BFO_0000051: feature:38720843-38721042:1:region
SIO_000974: 93c292b6-1e3f-4baf-a5e4-c0648eb4a49c

position:38720843:1
position: 38720843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38721042:1
position: 38721042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:38720843-38721042:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43296107..43296306
location: region:43296107-43296306:1
BFO_0000051: feature:43296107-43296306:1:region
SIO_000974: f0d43918-c122-41b5-ac85-b823c086f66a

position:43296107:1
position: 43296107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43296306:1
position: 43296306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0d43918-c122-41b5-ac85-b823c086f66a
SIO_000300: 1
SIO_000628: feature:43296107-43296306:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 4.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 4.
sequence version: OW386540.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 45536073
topology: linear
RO_0000086: SO_0000987
location: 1..45536073
location: region:1-45536073:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45536073:1
position: 45536073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45536073:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16336050..16336249
location: region:16336050-16336249:1
BFO_0000051: feature:16336050-16336249:1:region
SIO_000974: 1c1c3b45-f8d8-490e-b122-c8416d89cc5e

position:16336050:1
position: 16336050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16336249:1
position: 16336249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c1c3b45-f8d8-490e-b122-c8416d89cc5e
SIO_000300: 1
SIO_000628: feature:16336050-16336249:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18473420..18473619
location: region:18473420-18473619:1
BFO_0000051: feature:18473420-18473619:1:region
SIO_000974: ab58710a-e840-4dac-b99a-c08ae254b39f

position:18473420:1
position: 18473420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18473619:1
position: 18473619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab58710a-e840-4dac-b99a-c08ae254b39f
SIO_000300: 1
SIO_000628: feature:18473420-18473619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19605755..19605954
location: region:19605755-19605954:1
BFO_0000051: feature:19605755-19605954:1:region
SIO_000974: 03bd9628-428b-467e-9c8b-66e6be2e32b3

position:19605755:1
position: 19605755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19605954:1
position: 19605954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19605755-19605954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24255201..24255400
location: region:24255201-24255400:1
BFO_0000051: feature:24255201-24255400:1:region
SIO_000974: 4dcdd30e-9a6c-4954-9e03-f1f8ad7577a3

position:24255201:1
position: 24255201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24255400:1
position: 24255400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24255201-24255400:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33218921..33219120
location: region:33218921-33219120:1
BFO_0000051: feature:33218921-33219120:1:region
SIO_000974: 0c8f5d45-21d4-407e-84e0-71572441e45c

position:33218921:1
position: 33218921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33219120:1
position: 33219120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c8f5d45-21d4-407e-84e0-71572441e45c
SIO_000300: 1
SIO_000628: feature:33218921-33219120:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33797647..33797846
location: region:33797647-33797846:1
BFO_0000051: feature:33797647-33797846:1:region
SIO_000974: 2900f586-d804-4d81-91b0-f1a22a77c9d4

position:33797647:1
position: 33797647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33797846:1
position: 33797846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33797647-33797846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43412601..43412800
location: region:43412601-43412800:1
BFO_0000051: feature:43412601-43412800:1:region
SIO_000974: e1819fda-d207-4abe-8009-4d76ef859192

position:43412601:1
position: 43412601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43412800:1
position: 43412800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e1819fda-d207-4abe-8009-4d76ef859192
SIO_000300: 1
SIO_000628: feature:43412601-43412800:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 5.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 5.
sequence version: OW386541.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 44822593
topology: linear
RO_0000086: SO_0000987
location: 1..44822593
location: region:1-44822593:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44822593:1
position: 44822593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-44822593:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4058877..4059076
location: region:4058877-4059076:1
BFO_0000051: feature:4058877-4059076:1:region
SIO_000974: 6a661a30-1999-4636-af6d-a2d81f5be827

position:4058877:1
position: 4058877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4059076:1
position: 4059076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6a661a30-1999-4636-af6d-a2d81f5be827
SIO_000300: 1
SIO_000628: feature:4058877-4059076:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7549721..7549920
location: region:7549721-7549920:1
BFO_0000051: feature:7549721-7549920:1:region
SIO_000974: 1fa2d676-aef1-4f91-8ef0-b042a4be9151

position:7549721:1
position: 7549721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7549920:1
position: 7549920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fa2d676-aef1-4f91-8ef0-b042a4be9151
SIO_000300: 1
SIO_000628: feature:7549721-7549920:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19135996..19136195
location: region:19135996-19136195:1
BFO_0000051: feature:19135996-19136195:1:region
SIO_000974: 12a8e768-51aa-41b4-a787-270a8d5b976c

position:19135996:1
position: 19135996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19136195:1
position: 19136195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

12a8e768-51aa-41b4-a787-270a8d5b976c
SIO_000300: 1
SIO_000628: feature:19135996-19136195:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20649600..20649799
location: region:20649600-20649799:1
BFO_0000051: feature:20649600-20649799:1:region
SIO_000974: a60568b6-986f-4d4f-9194-cc488c9ea7c9

position:20649600:1
position: 20649600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20649799:1
position: 20649799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a60568b6-986f-4d4f-9194-cc488c9ea7c9
SIO_000300: 1
SIO_000628: feature:20649600-20649799:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25003643..25003842
location: region:25003643-25003842:1
BFO_0000051: feature:25003643-25003842:1:region
SIO_000974: c7a65a46-135d-4f97-89a1-75b77c26433a

position:25003643:1
position: 25003643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25003842:1
position: 25003842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7a65a46-135d-4f97-89a1-75b77c26433a
SIO_000300: 1
SIO_000628: feature:25003643-25003842:1:region

Glyphotaelius pellucidus genome assembly, chromosome: Z.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: Z.
sequence version: OW386542.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 43270781
topology: linear
RO_0000086: SO_0000987
location: 1..43270781
location: region:1-43270781:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43270781:1
position: 43270781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-43270781:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: Z
mol type: genomic DNA

Glyphotaelius pellucidus genome assembly, chromosome: 6.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 6.
sequence version: OW386543.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 42952221
topology: linear
RO_0000086: SO_0000987
location: 1..42952221
location: region:1-42952221:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42952221:1
position: 42952221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-42952221:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56114..56313
location: region:56114-56313:1
BFO_0000051: feature:56114-56313:1:region
SIO_000974: b0e15341-2abb-4cb4-bc7c-baf535fa2bb2

position:56114:1
position: 56114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56313:1
position: 56313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0e15341-2abb-4cb4-bc7c-baf535fa2bb2
SIO_000300: 1
SIO_000628: feature:56114-56313:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 219760..219959
location: region:219760-219959:1
BFO_0000051: feature:219760-219959:1:region
SIO_000974: 0bf56922-b213-45b9-84d4-47a689b707b7

position:219760:1
position: 219760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219959:1
position: 219959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0bf56922-b213-45b9-84d4-47a689b707b7
SIO_000300: 1
SIO_000628: feature:219760-219959:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2844958..2845157
location: region:2844958-2845157:1
BFO_0000051: feature:2844958-2845157:1:region
SIO_000974: 4bbe91e0-88dd-485d-9e82-401b43828c44

position:2844958:1
position: 2844958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2845157:1
position: 2845157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4bbe91e0-88dd-485d-9e82-401b43828c44
SIO_000300: 1
SIO_000628: feature:2844958-2845157:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5638286..5638485
location: region:5638286-5638485:1
BFO_0000051: feature:5638286-5638485:1:region
SIO_000974: db4531c0-8d74-47e7-8d8d-647cb9032f65

position:5638286:1
position: 5638286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5638485:1
position: 5638485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db4531c0-8d74-47e7-8d8d-647cb9032f65
SIO_000300: 1
SIO_000628: feature:5638286-5638485:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23293327..23293526
location: region:23293327-23293526:1
BFO_0000051: feature:23293327-23293526:1:region
SIO_000974: 38e4634a-6943-44f7-b770-ac636e444d24

position:23293327:1
position: 23293327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23293526:1
position: 23293526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38e4634a-6943-44f7-b770-ac636e444d24
SIO_000300: 1
SIO_000628: feature:23293327-23293526:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23750527..23750726
location: region:23750527-23750726:1
BFO_0000051: feature:23750527-23750726:1:region
SIO_000974: a3c692d9-d7a0-4de2-b966-39e1f9c64097

position:23750527:1
position: 23750527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23750726:1
position: 23750726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3c692d9-d7a0-4de2-b966-39e1f9c64097
SIO_000300: 1
SIO_000628: feature:23750527-23750726:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25480694..25480893
location: region:25480694-25480893:1
BFO_0000051: feature:25480694-25480893:1:region
SIO_000974: 9d08d7a2-aac6-49c1-aa55-bcd251b16918

position:25480694:1
position: 25480694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25480893:1
position: 25480893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d08d7a2-aac6-49c1-aa55-bcd251b16918
SIO_000300: 1
SIO_000628: feature:25480694-25480893:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26644524..26644723
location: region:26644524-26644723:1
BFO_0000051: feature:26644524-26644723:1:region
SIO_000974: 7c7998c9-e267-463b-94b6-ea2d2c19a928

position:26644524:1
position: 26644524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26644723:1
position: 26644723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7c7998c9-e267-463b-94b6-ea2d2c19a928
SIO_000300: 1
SIO_000628: feature:26644524-26644723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27751117..27751316
location: region:27751117-27751316:1
BFO_0000051: feature:27751117-27751316:1:region
SIO_000974: 4b2131c8-1589-4b30-b9b9-7aab129af9f1

position:27751117:1
position: 27751117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27751316:1
position: 27751316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b2131c8-1589-4b30-b9b9-7aab129af9f1
SIO_000300: 1
SIO_000628: feature:27751117-27751316:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29761323..29761522
location: region:29761323-29761522:1
BFO_0000051: feature:29761323-29761522:1:region
SIO_000974: 6b8adb8c-aec6-4a2b-8336-6d2856cfb982

position:29761323:1
position: 29761323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29761522:1
position: 29761522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b8adb8c-aec6-4a2b-8336-6d2856cfb982
SIO_000300: 1
SIO_000628: feature:29761323-29761522:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31854523..31854722
location: region:31854523-31854722:1
BFO_0000051: feature:31854523-31854722:1:region
SIO_000974: 8dfdec10-0c63-41ac-97ce-82d651b9e9c8

position:31854523:1
position: 31854523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31854722:1
position: 31854722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8dfdec10-0c63-41ac-97ce-82d651b9e9c8
SIO_000300: 1
SIO_000628: feature:31854523-31854722:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32430430..32430629
location: region:32430430-32430629:1
BFO_0000051: feature:32430430-32430629:1:region
SIO_000974: fef662cf-ef00-4295-8952-f944210a9be3

position:32430430:1
position: 32430430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32430629:1
position: 32430629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fef662cf-ef00-4295-8952-f944210a9be3
SIO_000300: 1
SIO_000628: feature:32430430-32430629:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34003298..34003497
location: region:34003298-34003497:1
BFO_0000051: feature:34003298-34003497:1:region
SIO_000974: 1718e183-bc26-4020-b816-452e4d096875

position:34003298:1
position: 34003298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34003497:1
position: 34003497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1718e183-bc26-4020-b816-452e4d096875
SIO_000300: 1
SIO_000628: feature:34003298-34003497:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37603800..37603999
location: region:37603800-37603999:1
BFO_0000051: feature:37603800-37603999:1:region
SIO_000974: 32647abc-7580-479a-900b-6918c3fb27a9

position:37603800:1
position: 37603800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37603999:1
position: 37603999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32647abc-7580-479a-900b-6918c3fb27a9
SIO_000300: 1
SIO_000628: feature:37603800-37603999:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37701319..37701518
location: region:37701319-37701518:1
BFO_0000051: feature:37701319-37701518:1:region
SIO_000974: 62c48d59-407e-4acd-a58f-ff0a34403aac

position:37701319:1
position: 37701319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37701518:1
position: 37701518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

62c48d59-407e-4acd-a58f-ff0a34403aac
SIO_000300: 1
SIO_000628: feature:37701319-37701518:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 7.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 7.
sequence version: OW386544.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 40161649
topology: linear
RO_0000086: SO_0000987
location: 1..40161649
location: region:1-40161649:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40161649:1
position: 40161649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-40161649:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 347804..348003
location: region:347804-348003:1
BFO_0000051: feature:347804-348003:1:region
SIO_000974: fe1adb92-9f4c-4e75-bcab-68f57844c85e

position:347804:1
position: 347804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348003:1
position: 348003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe1adb92-9f4c-4e75-bcab-68f57844c85e
SIO_000300: 1
SIO_000628: feature:347804-348003:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1081359..1081558
location: region:1081359-1081558:1
BFO_0000051: feature:1081359-1081558:1:region
SIO_000974: 67a187de-c639-449e-8716-33c87ae3d293

position:1081359:1
position: 1081359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1081558:1
position: 1081558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

67a187de-c639-449e-8716-33c87ae3d293
SIO_000300: 1
SIO_000628: feature:1081359-1081558:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1581459..1581658
location: region:1581459-1581658:1
BFO_0000051: feature:1581459-1581658:1:region
SIO_000974: e71dc04c-3a4a-4540-9d5c-1ed4e83bea67

position:1581459:1
position: 1581459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1581658:1
position: 1581658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e71dc04c-3a4a-4540-9d5c-1ed4e83bea67
SIO_000300: 1
SIO_000628: feature:1581459-1581658:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5219738..5219937
location: region:5219738-5219937:1
BFO_0000051: feature:5219738-5219937:1:region
SIO_000974: f23b8e90-4b91-440f-a6d8-d696c167a87d

position:5219738:1
position: 5219738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5219937:1
position: 5219937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f23b8e90-4b91-440f-a6d8-d696c167a87d
SIO_000300: 1
SIO_000628: feature:5219738-5219937:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24855983..24856182
location: region:24855983-24856182:1
BFO_0000051: feature:24855983-24856182:1:region
SIO_000974: a8d76519-5837-4388-bc3a-65ae2d2998a9

position:24855983:1
position: 24855983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24856182:1
position: 24856182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8d76519-5837-4388-bc3a-65ae2d2998a9
SIO_000300: 1
SIO_000628: feature:24855983-24856182:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28631142..28631341
location: region:28631142-28631341:1
BFO_0000051: feature:28631142-28631341:1:region
SIO_000974: 23605b9a-7d39-4428-a3da-3edcdae64604

position:28631142:1
position: 28631142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28631341:1
position: 28631341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

23605b9a-7d39-4428-a3da-3edcdae64604
SIO_000300: 1
SIO_000628: feature:28631142-28631341:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32791240..32791439
location: region:32791240-32791439:1
BFO_0000051: feature:32791240-32791439:1:region
SIO_000974: 65628748-823a-4944-8119-eb08a469a1ca

position:32791240:1
position: 32791240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32791439:1
position: 32791439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65628748-823a-4944-8119-eb08a469a1ca
SIO_000300: 1
SIO_000628: feature:32791240-32791439:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 8.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 8.
sequence version: OW386545.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 39851893
topology: linear
RO_0000086: SO_0000987
location: 1..39851893
location: region:1-39851893:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39851893:1
position: 39851893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39851893:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3593561..3593760
location: region:3593561-3593760:1
BFO_0000051: feature:3593561-3593760:1:region
SIO_000974: b08877ee-ea77-42c4-8af5-c524e3c65d8e

position:3593561:1
position: 3593561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3593760:1
position: 3593760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b08877ee-ea77-42c4-8af5-c524e3c65d8e
SIO_000300: 1
SIO_000628: feature:3593561-3593760:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12967197..12967396
location: region:12967197-12967396:1
BFO_0000051: feature:12967197-12967396:1:region
SIO_000974: 4a6f398c-f9b6-489b-adf3-8102160fdd3d

position:12967197:1
position: 12967197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12967396:1
position: 12967396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4a6f398c-f9b6-489b-adf3-8102160fdd3d
SIO_000300: 1
SIO_000628: feature:12967197-12967396:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14374013..14374212
location: region:14374013-14374212:1
BFO_0000051: feature:14374013-14374212:1:region
SIO_000974: 9c4cc5cc-826f-45a8-9dbd-2a2bf4f3a337

position:14374013:1
position: 14374013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14374212:1
position: 14374212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c4cc5cc-826f-45a8-9dbd-2a2bf4f3a337
SIO_000300: 1
SIO_000628: feature:14374013-14374212:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15541184..15541383
location: region:15541184-15541383:1
BFO_0000051: feature:15541184-15541383:1:region
SIO_000974: 950db197-5a49-4d94-b127-e6cb37d41f08

position:15541184:1
position: 15541184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15541383:1
position: 15541383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

950db197-5a49-4d94-b127-e6cb37d41f08
SIO_000300: 1
SIO_000628: feature:15541184-15541383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17382297..17382496
location: region:17382297-17382496:1
BFO_0000051: feature:17382297-17382496:1:region
SIO_000974: 40266486-7c40-4545-93e2-23eba32ad32c

position:17382297:1
position: 17382297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17382496:1
position: 17382496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40266486-7c40-4545-93e2-23eba32ad32c
SIO_000300: 1
SIO_000628: feature:17382297-17382496:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20193940..20194139
location: region:20193940-20194139:1
BFO_0000051: feature:20193940-20194139:1:region
SIO_000974: c79cb4a6-9e4d-4dc3-b60b-0b84d215baec

position:20193940:1
position: 20193940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20194139:1
position: 20194139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c79cb4a6-9e4d-4dc3-b60b-0b84d215baec
SIO_000300: 1
SIO_000628: feature:20193940-20194139:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32601140..32601339
location: region:32601140-32601339:1
BFO_0000051: feature:32601140-32601339:1:region
SIO_000974: e5b1c477-152f-4d10-bffe-736bf51d58c5

position:32601140:1
position: 32601140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32601339:1
position: 32601339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5b1c477-152f-4d10-bffe-736bf51d58c5
SIO_000300: 1
SIO_000628: feature:32601140-32601339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35136052..35136251
location: region:35136052-35136251:1
BFO_0000051: feature:35136052-35136251:1:region
SIO_000974: 1bfc9b37-464a-4b3d-94ad-f6cd84bb9884

position:35136052:1
position: 35136052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35136251:1
position: 35136251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:35136052-35136251:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 9.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 9.
sequence version: OW386546.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 38677407
topology: linear
RO_0000086: SO_0000987
location: 1..38677407
location: region:1-38677407:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38677407:1
position: 38677407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38677407:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17891147..17891346
location: region:17891147-17891346:1
BFO_0000051: feature:17891147-17891346:1:region
SIO_000974: f72731b0-9790-412e-b032-4822a35a5afb

position:17891147:1
position: 17891147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17891346:1
position: 17891346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f72731b0-9790-412e-b032-4822a35a5afb
SIO_000300: 1
SIO_000628: feature:17891147-17891346:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18349308..18349507
location: region:18349308-18349507:1
BFO_0000051: feature:18349308-18349507:1:region
SIO_000974: 6c4dbb6d-23f5-4d9e-8bb5-babb99056a04

position:18349308:1
position: 18349308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18349507:1
position: 18349507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c4dbb6d-23f5-4d9e-8bb5-babb99056a04
SIO_000300: 1
SIO_000628: feature:18349308-18349507:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19521301..19521500
location: region:19521301-19521500:1
BFO_0000051: feature:19521301-19521500:1:region
SIO_000974: f0b7adc0-4c52-4d19-b2c0-9cadbe2be2b5

position:19521301:1
position: 19521301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19521500:1
position: 19521500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0b7adc0-4c52-4d19-b2c0-9cadbe2be2b5
SIO_000300: 1
SIO_000628: feature:19521301-19521500:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28584023..28584222
location: region:28584023-28584222:1
BFO_0000051: feature:28584023-28584222:1:region
SIO_000974: 307ec73e-f9c9-4c09-a5e9-37a22e0ec068

position:28584023:1
position: 28584023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28584222:1
position: 28584222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

307ec73e-f9c9-4c09-a5e9-37a22e0ec068
SIO_000300: 1
SIO_000628: feature:28584023-28584222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28663357..28663556
location: region:28663357-28663556:1
BFO_0000051: feature:28663357-28663556:1:region
SIO_000974: 349be39d-2bb3-43fb-a314-2af1b9c62718

position:28663357:1
position: 28663357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28663556:1
position: 28663556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

349be39d-2bb3-43fb-a314-2af1b9c62718
SIO_000300: 1
SIO_000628: feature:28663357-28663556:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32819991..32820190
location: region:32819991-32820190:1
BFO_0000051: feature:32819991-32820190:1:region
SIO_000974: da27fd32-4129-4af9-8373-d069ad63c573

position:32819991:1
position: 32819991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32820190:1
position: 32820190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da27fd32-4129-4af9-8373-d069ad63c573
SIO_000300: 1
SIO_000628: feature:32819991-32820190:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35585498..35585697
location: region:35585498-35585697:1
BFO_0000051: feature:35585498-35585697:1:region
SIO_000974: c8ad530b-f7cb-41d8-8964-362f5da42ee7

position:35585498:1
position: 35585498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35585697:1
position: 35585697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8ad530b-f7cb-41d8-8964-362f5da42ee7
SIO_000300: 1
SIO_000628: feature:35585498-35585697:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 10.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 10.
sequence version: OW386547.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 37443075
topology: linear
RO_0000086: SO_0000987
location: 1..37443075
location: region:1-37443075:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37443075:1
position: 37443075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37443075:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5159524..5159723
location: region:5159524-5159723:1
BFO_0000051: feature:5159524-5159723:1:region
SIO_000974: 93c24990-1d9d-45cc-9c19-b86900ce4906

position:5159524:1
position: 5159524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5159723:1
position: 5159723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93c24990-1d9d-45cc-9c19-b86900ce4906
SIO_000300: 1
SIO_000628: feature:5159524-5159723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5226753..5226952
location: region:5226753-5226952:1
BFO_0000051: feature:5226753-5226952:1:region
SIO_000974: 80cb5464-9619-480e-a519-bf71a250ae8e

position:5226753:1
position: 5226753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5226952:1
position: 5226952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80cb5464-9619-480e-a519-bf71a250ae8e
SIO_000300: 1
SIO_000628: feature:5226753-5226952:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5784164..5784363
location: region:5784164-5784363:1
BFO_0000051: feature:5784164-5784363:1:region
SIO_000974: e5303412-bb7b-4ebe-8078-6f81e52fb269

position:5784164:1
position: 5784164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5784363:1
position: 5784363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5303412-bb7b-4ebe-8078-6f81e52fb269
SIO_000300: 1
SIO_000628: feature:5784164-5784363:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28195617..28195816
location: region:28195617-28195816:1
BFO_0000051: feature:28195617-28195816:1:region
SIO_000974: 7acdbda8-2b14-4779-b175-eed385d3d418

position:28195617:1
position: 28195617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28195816:1
position: 28195816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7acdbda8-2b14-4779-b175-eed385d3d418
SIO_000300: 1
SIO_000628: feature:28195617-28195816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30935673..30935872
location: region:30935673-30935872:1
BFO_0000051: feature:30935673-30935872:1:region
SIO_000974: ba883175-7b98-4f3c-b06c-0b4c51d09713

position:30935673:1
position: 30935673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30935872:1
position: 30935872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba883175-7b98-4f3c-b06c-0b4c51d09713
SIO_000300: 1
SIO_000628: feature:30935673-30935872:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33193118..33193317
location: region:33193118-33193317:1
BFO_0000051: feature:33193118-33193317:1:region
SIO_000974: d46dd101-857e-4817-b274-a425023e3d26

position:33193118:1
position: 33193118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33193317:1
position: 33193317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d46dd101-857e-4817-b274-a425023e3d26
SIO_000300: 1
SIO_000628: feature:33193118-33193317:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33306745..33306944
location: region:33306745-33306944:1
BFO_0000051: feature:33306745-33306944:1:region
SIO_000974: e053618e-81c6-4479-9918-6ff1e9b390aa

position:33306745:1
position: 33306745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33306944:1
position: 33306944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e053618e-81c6-4479-9918-6ff1e9b390aa
SIO_000300: 1
SIO_000628: feature:33306745-33306944:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 11.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 11.
sequence version: OW386548.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36927982
topology: linear
RO_0000086: SO_0000987
location: 1..36927982
location: region:1-36927982:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36927982:1
position: 36927982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36927982:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1094306..1094505
location: region:1094306-1094505:1
BFO_0000051: feature:1094306-1094505:1:region
SIO_000974: ac351f72-6582-4677-b758-7f0e67dfa5b6

position:1094306:1
position: 1094306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1094505:1
position: 1094505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac351f72-6582-4677-b758-7f0e67dfa5b6
SIO_000300: 1
SIO_000628: feature:1094306-1094505:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6249232..6249431
location: region:6249232-6249431:1
BFO_0000051: feature:6249232-6249431:1:region
SIO_000974: bd81bc07-c72f-4c31-ab8a-0f090f13c862

position:6249232:1
position: 6249232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6249431:1
position: 6249431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd81bc07-c72f-4c31-ab8a-0f090f13c862
SIO_000300: 1
SIO_000628: feature:6249232-6249431:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14722013..14722212
location: region:14722013-14722212:1
BFO_0000051: feature:14722013-14722212:1:region
SIO_000974: 6920c581-1626-409e-b520-0d3177b74f16

position:14722013:1
position: 14722013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14722212:1
position: 14722212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6920c581-1626-409e-b520-0d3177b74f16
SIO_000300: 1
SIO_000628: feature:14722013-14722212:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28284119..28284318
location: region:28284119-28284318:1
BFO_0000051: feature:28284119-28284318:1:region
SIO_000974: 82b8ead7-df33-4617-8f20-c4c0525f4306

position:28284119:1
position: 28284119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28284318:1
position: 28284318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82b8ead7-df33-4617-8f20-c4c0525f4306
SIO_000300: 1
SIO_000628: feature:28284119-28284318:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28631103..28631302
location: region:28631103-28631302:1
BFO_0000051: feature:28631103-28631302:1:region
SIO_000974: 057e9444-7e19-4b3a-91ff-05b4fc86356d

position:28631103:1
position: 28631103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28631302:1
position: 28631302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

057e9444-7e19-4b3a-91ff-05b4fc86356d
SIO_000300: 1
SIO_000628: feature:28631103-28631302:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 12.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 12.
sequence version: OW386549.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36814344
topology: linear
RO_0000086: SO_0000987
location: 1..36814344
location: region:1-36814344:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36814344:1
position: 36814344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36814344:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3730941..3731140
location: region:3730941-3731140:1
BFO_0000051: feature:3730941-3731140:1:region
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reference: sequence
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:3730941-3731140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:6022141-6022340:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:6022141-6022340:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:7641577-7641776:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:7641577-7641776:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:10863402-10863601:1
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SIO_000974: b539bc5e-8618-4c5f-ab5d-5fd98e7fdf6e

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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:10863402-10863601:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:11876648-11876847:1
BFO_0000051: feature:11876648-11876847:1:region
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:11876648-11876847:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13438835..13439034
location: region:13438835-13439034:1
BFO_0000051: feature:13438835-13439034:1:region
SIO_000974: 094ed4c8-db0d-44e5-ac1a-febf7d23e628

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reference: sequence
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reference: sequence
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SIO_000300: 1
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assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:13529347-13529546:1
BFO_0000051: feature:13529347-13529546:1:region
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:13529347-13529546:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17706827..17707026
location: region:17706827-17707026:1
BFO_0000051: feature:17706827-17707026:1:region
SIO_000974: 7647e103-6527-4e40-ac90-0524718790d9

position:17706827:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:17706827-17707026:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17736317..17736516
location: region:17736317-17736516:1
BFO_0000051: feature:17736317-17736516:1:region
SIO_000974: a66880ee-bc70-47be-8117-71ee16e34128

position:17736317:1
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reference: sequence
type: ForwardStrandPosition
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:17736317-17736516:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24847112..24847311
location: region:24847112-24847311:1
BFO_0000051: feature:24847112-24847311:1:region
SIO_000974: 53773676-d5b3-4486-a861-0117d70ce58f

position:24847112:1
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reference: sequence
type: ForwardStrandPosition
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:24847112-24847311:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27807856..27808055
location: region:27807856-27808055:1
BFO_0000051: feature:27807856-27808055:1:region
SIO_000974: 1a4d6054-b830-40e8-b45a-3d032cc6f559

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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:27807856-27808055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28308385..28308584
location: region:28308385-28308584:1
BFO_0000051: feature:28308385-28308584:1:region
SIO_000974: 9eed67e6-abd5-4aee-8b31-99155a850eb6

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position: 28308385
reference: sequence
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:28308385-28308584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30333616..30333815
location: region:30333616-30333815:1
BFO_0000051: feature:30333616-30333815:1:region
SIO_000974: 37d0188b-7147-410c-baf8-27228efc7c16

position:30333616:1
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reference: sequence
type: ForwardStrandPosition
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position: 30333815
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:30333616-30333815:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33011517..33011716
location: region:33011517-33011716:1
BFO_0000051: feature:33011517-33011716:1:region
SIO_000974: e0b3fe65-7495-4316-a528-7f8a8992a11e

position:33011517:1
position: 33011517
reference: sequence
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position: 33011716
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:33011517-33011716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33757620..33757819
location: region:33757620-33757819:1
BFO_0000051: feature:33757620-33757819:1:region
SIO_000974: 1d840746-1d6a-4e72-ba12-dd941efea30e

position:33757620:1
position: 33757620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33757819:1
position: 33757819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33757620-33757819:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 13.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 13.
sequence version: OW386550.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36772261
topology: linear
RO_0000086: SO_0000987
location: 1..36772261
location: region:1-36772261:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36772261:1
position: 36772261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36772261:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9412433..9412632
location: region:9412433-9412632:1
BFO_0000051: feature:9412433-9412632:1:region
SIO_000974: 83cd8db5-0440-47df-9aee-03fb9f9a808f

position:9412433:1
position: 9412433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9412632:1
position: 9412632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9412433-9412632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17597691..17597890
location: region:17597691-17597890:1
BFO_0000051: feature:17597691-17597890:1:region
SIO_000974: a8744a1d-7c6a-4334-8ebb-d99140084a7a

position:17597691:1
position: 17597691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17597890:1
position: 17597890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17597691-17597890:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21925248..21925447
location: region:21925248-21925447:1
BFO_0000051: feature:21925248-21925447:1:region
SIO_000974: 7f4c14a1-8f0e-4f74-8537-59818b87ec9f

position:21925248:1
position: 21925248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21925447:1
position: 21925447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:21925248-21925447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28516082..28516281
location: region:28516082-28516281:1
BFO_0000051: feature:28516082-28516281:1:region
SIO_000974: e1963663-2caf-4699-99bc-681fbf854429

position:28516082:1
position: 28516082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28516281:1
position: 28516281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:28516082-28516281:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30165205..30165404
location: region:30165205-30165404:1
BFO_0000051: feature:30165205-30165404:1:region
SIO_000974: ab57b722-9af6-4968-9e8b-8bf6ee97177d

position:30165205:1
position: 30165205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30165404:1
position: 30165404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:30165205-30165404:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32291186..32291385
location: region:32291186-32291385:1
BFO_0000051: feature:32291186-32291385:1:region
SIO_000974: 94773671-4586-48cd-85d4-15d443ba6809

position:32291186:1
position: 32291186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32291385:1
position: 32291385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94773671-4586-48cd-85d4-15d443ba6809
SIO_000300: 1
SIO_000628: feature:32291186-32291385:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 14.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 14.
sequence version: OW386551.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36478969
topology: linear
RO_0000086: SO_0000987
location: 1..36478969
location: region:1-36478969:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36478969:1
position: 36478969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36478969:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 389001..389200
location: region:389001-389200:1
BFO_0000051: feature:389001-389200:1:region
SIO_000974: 3b63d8d8-272d-4365-bb15-19eb9b637ca0

position:389001:1
position: 389001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389200:1
position: 389200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b63d8d8-272d-4365-bb15-19eb9b637ca0
SIO_000300: 1
SIO_000628: feature:389001-389200:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 15.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 15.
sequence version: OW386552.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36321845
topology: linear
RO_0000086: SO_0000987
location: 1..36321845
location: region:1-36321845:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36321845:1
position: 36321845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36321845:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10179342..10179541
location: region:10179342-10179541:1
BFO_0000051: feature:10179342-10179541:1:region
SIO_000974: dd3b82da-89cd-490c-a9f2-4ec5530ae90f

position:10179342:1
position: 10179342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10179541:1
position: 10179541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd3b82da-89cd-490c-a9f2-4ec5530ae90f
SIO_000300: 1
SIO_000628: feature:10179342-10179541:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10213758..10213957
location: region:10213758-10213957:1
BFO_0000051: feature:10213758-10213957:1:region
SIO_000974: 803d4234-9a6c-422f-a1ae-541fd65e7fd9

position:10213758:1
position: 10213758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10213957:1
position: 10213957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

803d4234-9a6c-422f-a1ae-541fd65e7fd9
SIO_000300: 1
SIO_000628: feature:10213758-10213957:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17297513..17297712
location: region:17297513-17297712:1
BFO_0000051: feature:17297513-17297712:1:region
SIO_000974: 03d4aa61-6eda-4e7b-b504-e934d6bc77ac

position:17297513:1
position: 17297513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17297712:1
position: 17297712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03d4aa61-6eda-4e7b-b504-e934d6bc77ac
SIO_000300: 1
SIO_000628: feature:17297513-17297712:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 16.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 16.
sequence version: OW386553.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36202071
topology: linear
RO_0000086: SO_0000987
location: 1..36202071
location: region:1-36202071:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36202071:1
position: 36202071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36202071:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 997676..997875
location: region:997676-997875:1
BFO_0000051: feature:997676-997875:1:region
SIO_000974: 4375f4c9-45e0-43aa-aa22-fdd1248a67ea

position:997676:1
position: 997676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:997875:1
position: 997875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4375f4c9-45e0-43aa-aa22-fdd1248a67ea
SIO_000300: 1
SIO_000628: feature:997676-997875:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1428655..1428854
location: region:1428655-1428854:1
BFO_0000051: feature:1428655-1428854:1:region
SIO_000974: 9fa4ad1d-510f-451b-af5d-a35ddba1e477

position:1428655:1
position: 1428655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1428854:1
position: 1428854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9fa4ad1d-510f-451b-af5d-a35ddba1e477
SIO_000300: 1
SIO_000628: feature:1428655-1428854:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2292278..2292477
location: region:2292278-2292477:1
BFO_0000051: feature:2292278-2292477:1:region
SIO_000974: 10c76859-d918-4297-b9ed-1324dbbe1fc1

position:2292278:1
position: 2292278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2292477:1
position: 2292477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10c76859-d918-4297-b9ed-1324dbbe1fc1
SIO_000300: 1
SIO_000628: feature:2292278-2292477:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2768197..2768396
location: region:2768197-2768396:1
BFO_0000051: feature:2768197-2768396:1:region
SIO_000974: 0367aab9-58f5-414a-8351-f52c58a7e8aa

position:2768197:1
position: 2768197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2768396:1
position: 2768396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0367aab9-58f5-414a-8351-f52c58a7e8aa
SIO_000300: 1
SIO_000628: feature:2768197-2768396:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4416879..4417078
location: region:4416879-4417078:1
BFO_0000051: feature:4416879-4417078:1:region
SIO_000974: 11dd5a78-90c4-4ff5-9e6e-53a53d06f0ff

position:4416879:1
position: 4416879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4417078:1
position: 4417078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

11dd5a78-90c4-4ff5-9e6e-53a53d06f0ff
SIO_000300: 1
SIO_000628: feature:4416879-4417078:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6613459..6613658
location: region:6613459-6613658:1
BFO_0000051: feature:6613459-6613658:1:region
SIO_000974: fc58ac43-08e2-4687-9a84-5869750f22e7

position:6613459:1
position: 6613459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6613658:1
position: 6613658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc58ac43-08e2-4687-9a84-5869750f22e7
SIO_000300: 1
SIO_000628: feature:6613459-6613658:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11041647..11041846
location: region:11041647-11041846:1
BFO_0000051: feature:11041647-11041846:1:region
SIO_000974: f19c1d8c-8454-45e3-bdb7-67486db46c8c

position:11041647:1
position: 11041647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11041846:1
position: 11041846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f19c1d8c-8454-45e3-bdb7-67486db46c8c
SIO_000300: 1
SIO_000628: feature:11041647-11041846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18950687..18950886
location: region:18950687-18950886:1
BFO_0000051: feature:18950687-18950886:1:region
SIO_000974: 07c57add-b3e2-4870-a0ae-40af851f07f6

position:18950687:1
position: 18950687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18950886:1
position: 18950886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07c57add-b3e2-4870-a0ae-40af851f07f6
SIO_000300: 1
SIO_000628: feature:18950687-18950886:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19961568..19961767
location: region:19961568-19961767:1
BFO_0000051: feature:19961568-19961767:1:region
SIO_000974: b245ac4d-bf2f-47e9-929f-f63fef85cdef

position:19961568:1
position: 19961568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19961767:1
position: 19961767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b245ac4d-bf2f-47e9-929f-f63fef85cdef
SIO_000300: 1
SIO_000628: feature:19961568-19961767:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26793477..26793676
location: region:26793477-26793676:1
BFO_0000051: feature:26793477-26793676:1:region
SIO_000974: f9ccabc9-d448-4c3c-859b-6b905c2c2e3c

position:26793477:1
position: 26793477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26793676:1
position: 26793676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9ccabc9-d448-4c3c-859b-6b905c2c2e3c
SIO_000300: 1
SIO_000628: feature:26793477-26793676:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29197726..29197925
location: region:29197726-29197925:1
BFO_0000051: feature:29197726-29197925:1:region
SIO_000974: 36cf1181-f9f1-4e83-a38f-c2d19e0eb088

position:29197726:1
position: 29197726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29197925:1
position: 29197925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36cf1181-f9f1-4e83-a38f-c2d19e0eb088
SIO_000300: 1
SIO_000628: feature:29197726-29197925:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29266926..29267125
location: region:29266926-29267125:1
BFO_0000051: feature:29266926-29267125:1:region
SIO_000974: cd798dfe-0699-414d-a94e-0a233b286cf7

position:29266926:1
position: 29266926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29267125:1
position: 29267125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cd798dfe-0699-414d-a94e-0a233b286cf7
SIO_000300: 1
SIO_000628: feature:29266926-29267125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29317749..29317948
location: region:29317749-29317948:1
BFO_0000051: feature:29317749-29317948:1:region
SIO_000974: b9d11682-dea6-44ab-b210-dc961ce0dc25

position:29317749:1
position: 29317749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29317948:1
position: 29317948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9d11682-dea6-44ab-b210-dc961ce0dc25
SIO_000300: 1
SIO_000628: feature:29317749-29317948:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30380948..30381147
location: region:30380948-30381147:1
BFO_0000051: feature:30380948-30381147:1:region
SIO_000974: f1d13e1c-eed8-4f92-9bdc-1dbbc8f18d2d

position:30380948:1
position: 30380948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30381147:1
position: 30381147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1d13e1c-eed8-4f92-9bdc-1dbbc8f18d2d
SIO_000300: 1
SIO_000628: feature:30380948-30381147:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32336076..32336275
location: region:32336076-32336275:1
BFO_0000051: feature:32336076-32336275:1:region
SIO_000974: ccd3c161-f7d5-4d4b-9cfa-71d1ed47e3c9

position:32336076:1
position: 32336076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32336275:1
position: 32336275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccd3c161-f7d5-4d4b-9cfa-71d1ed47e3c9
SIO_000300: 1
SIO_000628: feature:32336076-32336275:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32995391..32995590
location: region:32995391-32995590:1
BFO_0000051: feature:32995391-32995590:1:region
SIO_000974: 4000109d-5b91-49b0-9c6d-b2caff6e5459

position:32995391:1
position: 32995391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32995590:1
position: 32995590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4000109d-5b91-49b0-9c6d-b2caff6e5459
SIO_000300: 1
SIO_000628: feature:32995391-32995590:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 17.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 17.
sequence version: OW386554.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36143664
topology: linear
RO_0000086: SO_0000987
location: 1..36143664
location: region:1-36143664:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36143664:1
position: 36143664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36143664:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2291174..2291373
location: region:2291174-2291373:1
BFO_0000051: feature:2291174-2291373:1:region
SIO_000974: 0338ad85-974e-47f4-90c0-91ffe77e7684

position:2291174:1
position: 2291174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2291373:1
position: 2291373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0338ad85-974e-47f4-90c0-91ffe77e7684
SIO_000300: 1
SIO_000628: feature:2291174-2291373:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6082982..6083181
location: region:6082982-6083181:1
BFO_0000051: feature:6082982-6083181:1:region
SIO_000974: 95db9c79-a095-445f-9277-118d6f7b350b

position:6082982:1
position: 6082982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6083181:1
position: 6083181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95db9c79-a095-445f-9277-118d6f7b350b
SIO_000300: 1
SIO_000628: feature:6082982-6083181:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6206853..6207052
location: region:6206853-6207052:1
BFO_0000051: feature:6206853-6207052:1:region
SIO_000974: 7d2ae026-a261-4d57-a744-5827d1b63529

position:6206853:1
position: 6206853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6207052:1
position: 6207052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d2ae026-a261-4d57-a744-5827d1b63529
SIO_000300: 1
SIO_000628: feature:6206853-6207052:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7796670..7796869
location: region:7796670-7796869:1
BFO_0000051: feature:7796670-7796869:1:region
SIO_000974: 4ac32d6a-0c9d-45c4-916e-c2cee6c7a52a

position:7796670:1
position: 7796670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7796869:1
position: 7796869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4ac32d6a-0c9d-45c4-916e-c2cee6c7a52a
SIO_000300: 1
SIO_000628: feature:7796670-7796869:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8515340..8515539
location: region:8515340-8515539:1
BFO_0000051: feature:8515340-8515539:1:region
SIO_000974: 764119bc-72ea-44fb-b566-0f51e99a9808

position:8515340:1
position: 8515340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8515539:1
position: 8515539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

764119bc-72ea-44fb-b566-0f51e99a9808
SIO_000300: 1
SIO_000628: feature:8515340-8515539:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13318299..13318498
location: region:13318299-13318498:1
BFO_0000051: feature:13318299-13318498:1:region
SIO_000974: 90e77a2a-00a0-4bb8-98c9-428143f143d3

position:13318299:1
position: 13318299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13318498:1
position: 13318498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

90e77a2a-00a0-4bb8-98c9-428143f143d3
SIO_000300: 1
SIO_000628: feature:13318299-13318498:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23065244..23065443
location: region:23065244-23065443:1
BFO_0000051: feature:23065244-23065443:1:region
SIO_000974: 586affed-e2d4-4ace-ab8b-e2555e6bda6a

position:23065244:1
position: 23065244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23065443:1
position: 23065443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

586affed-e2d4-4ace-ab8b-e2555e6bda6a
SIO_000300: 1
SIO_000628: feature:23065244-23065443:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23346721..23346920
location: region:23346721-23346920:1
BFO_0000051: feature:23346721-23346920:1:region
SIO_000974: 53f12b1b-7f8c-4763-ba50-5ca6be884201

position:23346721:1
position: 23346721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23346920:1
position: 23346920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53f12b1b-7f8c-4763-ba50-5ca6be884201
SIO_000300: 1
SIO_000628: feature:23346721-23346920:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23853230..23853429
location: region:23853230-23853429:1
BFO_0000051: feature:23853230-23853429:1:region
SIO_000974: 3473d023-c0c5-486a-bc74-3df64ee491fd

position:23853230:1
position: 23853230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23853429:1
position: 23853429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3473d023-c0c5-486a-bc74-3df64ee491fd
SIO_000300: 1
SIO_000628: feature:23853230-23853429:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24601747..24601946
location: region:24601747-24601946:1
BFO_0000051: feature:24601747-24601946:1:region
SIO_000974: 50c0aeff-dfab-4351-b09c-fa77f3dee338

position:24601747:1
position: 24601747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24601946:1
position: 24601946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50c0aeff-dfab-4351-b09c-fa77f3dee338
SIO_000300: 1
SIO_000628: feature:24601747-24601946:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26687130..26687329
location: region:26687130-26687329:1
BFO_0000051: feature:26687130-26687329:1:region
SIO_000974: 6fbe79eb-5f60-47be-a00b-59c1a265f6cd

position:26687130:1
position: 26687130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26687329:1
position: 26687329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:26687130-26687329:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30888562..30888761
location: region:30888562-30888761:1
BFO_0000051: feature:30888562-30888761:1:region
SIO_000974: e587d734-0a67-4ce1-a3e0-41326114ff53

position:30888562:1
position: 30888562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30888761:1
position: 30888761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:30888562-30888761:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32868942..32869141
location: region:32868942-32869141:1
BFO_0000051: feature:32868942-32869141:1:region
SIO_000974: 11cb4b20-5b36-48df-b5b9-fa6dd03f0101

position:32868942:1
position: 32868942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32869141:1
position: 32869141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:32868942-32869141:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33977645..33977844
location: region:33977645-33977844:1
BFO_0000051: feature:33977645-33977844:1:region
SIO_000974: 5039c6c6-fa42-4247-b628-f2f9b4c8c206

position:33977645:1
position: 33977645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33977844:1
position: 33977844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33977645-33977844:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35054472..35054671
location: region:35054472-35054671:1
BFO_0000051: feature:35054472-35054671:1:region
SIO_000974: c61f259a-12db-4a22-a0d4-f2ec2c57196e

position:35054472:1
position: 35054472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35054671:1
position: 35054671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:35054472-35054671:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 18.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 18.
sequence version: OW386555.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32118461
topology: linear
RO_0000086: SO_0000987
location: 1..32118461
location: region:1-32118461:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32118461:1
position: 32118461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32118461:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 557422..557621
location: region:557422-557621:1
BFO_0000051: feature:557422-557621:1:region
SIO_000974: fed697c1-0e59-461e-9e38-0f3926594733

position:557422:1
position: 557422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:557621:1
position: 557621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:557422-557621:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1473683..1473882
location: region:1473683-1473882:1
BFO_0000051: feature:1473683-1473882:1:region
SIO_000974: 1a141a5f-5adf-43a8-bb39-664388ee735e

position:1473683:1
position: 1473683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1473882:1
position: 1473882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1473683-1473882:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1638391..1638590
location: region:1638391-1638590:1
BFO_0000051: feature:1638391-1638590:1:region
SIO_000974: 0c41f52f-919b-4faa-85e3-59e60d44374b

position:1638391:1
position: 1638391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1638590:1
position: 1638590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1638391-1638590:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3868672..3868871
location: region:3868672-3868871:1
BFO_0000051: feature:3868672-3868871:1:region
SIO_000974: 30b54a1b-b297-4a76-a6fa-1f7ed0522e2b

position:3868672:1
position: 3868672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3868871:1
position: 3868871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3868672-3868871:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7606876..7607075
location: region:7606876-7607075:1
BFO_0000051: feature:7606876-7607075:1:region
SIO_000974: f21ba834-1688-40d9-b3ef-eea8c06d05d6

position:7606876:1
position: 7606876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7607075:1
position: 7607075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7606876-7607075:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8656076..8656275
location: region:8656076-8656275:1
BFO_0000051: feature:8656076-8656275:1:region
SIO_000974: 37c43c79-3c41-438c-aec2-e42985d9bda2

position:8656076:1
position: 8656076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8656275:1
position: 8656275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8656076-8656275:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11554276..11554475
location: region:11554276-11554475:1
BFO_0000051: feature:11554276-11554475:1:region
SIO_000974: 792da93a-de73-4574-9644-e87cbc2f56c9

position:11554276:1
position: 11554276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11554475:1
position: 11554475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11554276-11554475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11973257..11973456
location: region:11973257-11973456:1
BFO_0000051: feature:11973257-11973456:1:region
SIO_000974: 63221941-c5d6-4ed0-bb73-ed190d0baf45

position:11973257:1
position: 11973257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11973456:1
position: 11973456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11973257-11973456:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18093773..18093972
location: region:18093773-18093972:1
BFO_0000051: feature:18093773-18093972:1:region
SIO_000974: 50d8df0e-c1e5-4d7f-936f-8c00bfbbfa5d

position:18093773:1
position: 18093773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18093972:1
position: 18093972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:18093773-18093972:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19145890..19146089
location: region:19145890-19146089:1
BFO_0000051: feature:19145890-19146089:1:region
SIO_000974: 8c124a5e-06a6-4997-8be4-6d3f30d263d8

position:19145890:1
position: 19145890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19146089:1
position: 19146089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19145890-19146089:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20427969..20428168
location: region:20427969-20428168:1
BFO_0000051: feature:20427969-20428168:1:region
SIO_000974: ef1dc699-ef34-4b2f-8377-d3c93e75bed5

position:20427969:1
position: 20427969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20428168:1
position: 20428168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:20427969-20428168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20554660..20554859
location: region:20554660-20554859:1
BFO_0000051: feature:20554660-20554859:1:region
SIO_000974: 1423ef5b-2141-4c6b-96d0-7d8fc96a42fa

position:20554660:1
position: 20554660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20554859:1
position: 20554859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1423ef5b-2141-4c6b-96d0-7d8fc96a42fa
SIO_000300: 1
SIO_000628: feature:20554660-20554859:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21519058..21519257
location: region:21519058-21519257:1
BFO_0000051: feature:21519058-21519257:1:region
SIO_000974: c46dd592-cac5-430e-a741-e6fd3e590afa

position:21519058:1
position: 21519058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21519257:1
position: 21519257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c46dd592-cac5-430e-a741-e6fd3e590afa
SIO_000300: 1
SIO_000628: feature:21519058-21519257:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25310029..25310228
location: region:25310029-25310228:1
BFO_0000051: feature:25310029-25310228:1:region
SIO_000974: 9cd32d01-d199-4bf0-9573-4cc9015ff964

position:25310029:1
position: 25310029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25310228:1
position: 25310228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9cd32d01-d199-4bf0-9573-4cc9015ff964
SIO_000300: 1
SIO_000628: feature:25310029-25310228:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25411974..25412173
location: region:25411974-25412173:1
BFO_0000051: feature:25411974-25412173:1:region
SIO_000974: 884032ad-b1fb-4b42-bb9f-e594c131b2f5

position:25411974:1
position: 25411974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25412173:1
position: 25412173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25411974-25412173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25842507..25842706
location: region:25842507-25842706:1
BFO_0000051: feature:25842507-25842706:1:region
SIO_000974: 2ada6f6d-4525-4551-9597-b78723069163

position:25842507:1
position: 25842507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25842706:1
position: 25842706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25842507-25842706:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27557538..27557737
location: region:27557538-27557737:1
BFO_0000051: feature:27557538-27557737:1:region
SIO_000974: 1ba69de3-2881-4d46-85f1-2ddff6d2aefe

position:27557538:1
position: 27557538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27557737:1
position: 27557737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ba69de3-2881-4d46-85f1-2ddff6d2aefe
SIO_000300: 1
SIO_000628: feature:27557538-27557737:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28596365..28596564
location: region:28596365-28596564:1
BFO_0000051: feature:28596365-28596564:1:region
SIO_000974: ec9d4400-de64-4f07-9a78-c4c793f497e8

position:28596365:1
position: 28596365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28596564:1
position: 28596564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec9d4400-de64-4f07-9a78-c4c793f497e8
SIO_000300: 1
SIO_000628: feature:28596365-28596564:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 19.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 19.
sequence version: OW386556.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 30158372
topology: linear
RO_0000086: SO_0000987
location: 1..30158372
location: region:1-30158372:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30158372:1
position: 30158372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30158372:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7208001..7208200
location: region:7208001-7208200:1
BFO_0000051: feature:7208001-7208200:1:region
SIO_000974: b7a2af97-bbef-47f3-b48d-bffecdbbdb83

position:7208001:1
position: 7208001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7208200:1
position: 7208200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7a2af97-bbef-47f3-b48d-bffecdbbdb83
SIO_000300: 1
SIO_000628: feature:7208001-7208200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17249201..17249400
location: region:17249201-17249400:1
BFO_0000051: feature:17249201-17249400:1:region
SIO_000974: e5552b5d-e80a-42b2-8799-123408174d95

position:17249201:1
position: 17249201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17249400:1
position: 17249400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5552b5d-e80a-42b2-8799-123408174d95
SIO_000300: 1
SIO_000628: feature:17249201-17249400:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22890401..22890600
location: region:22890401-22890600:1
BFO_0000051: feature:22890401-22890600:1:region
SIO_000974: 141fae8e-526c-4f11-85ff-13bd88f4c493

position:22890401:1
position: 22890401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22890600:1
position: 22890600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

141fae8e-526c-4f11-85ff-13bd88f4c493
SIO_000300: 1
SIO_000628: feature:22890401-22890600:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22960996..22961195
location: region:22960996-22961195:1
BFO_0000051: feature:22960996-22961195:1:region
SIO_000974: de80aa10-97d5-4ab2-bb50-03dd9fca400d

position:22960996:1
position: 22960996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22961195:1
position: 22961195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

de80aa10-97d5-4ab2-bb50-03dd9fca400d
SIO_000300: 1
SIO_000628: feature:22960996-22961195:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23283405..23283604
location: region:23283405-23283604:1
BFO_0000051: feature:23283405-23283604:1:region
SIO_000974: 9d7c3510-f281-4051-bcc5-177343824281

position:23283405:1
position: 23283405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23283604:1
position: 23283604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d7c3510-f281-4051-bcc5-177343824281
SIO_000300: 1
SIO_000628: feature:23283405-23283604:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25136015..25136214
location: region:25136015-25136214:1
BFO_0000051: feature:25136015-25136214:1:region
SIO_000974: d2974e00-60d8-4fa4-89b2-60961f25ff6c

position:25136015:1
position: 25136015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25136214:1
position: 25136214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d2974e00-60d8-4fa4-89b2-60961f25ff6c
SIO_000300: 1
SIO_000628: feature:25136015-25136214:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25596370..25596569
location: region:25596370-25596569:1
BFO_0000051: feature:25596370-25596569:1:region
SIO_000974: 9190f15f-7748-4ca1-9d56-2b97c4906b3d

position:25596370:1
position: 25596370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25596569:1
position: 25596569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25596370-25596569:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27180217..27180416
location: region:27180217-27180416:1
BFO_0000051: feature:27180217-27180416:1:region
SIO_000974: f82e04ed-a505-41fa-83b0-fdb36eee5ad2

position:27180217:1
position: 27180217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27180416:1
position: 27180416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f82e04ed-a505-41fa-83b0-fdb36eee5ad2
SIO_000300: 1
SIO_000628: feature:27180217-27180416:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 20.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 20.
sequence version: OW386557.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29981750
topology: linear
RO_0000086: SO_0000987
location: 1..29981750
location: region:1-29981750:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29981750:1
position: 29981750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29981750:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3884835..3885034
location: region:3884835-3885034:1
BFO_0000051: feature:3884835-3885034:1:region
SIO_000974: bde0741b-46b8-4813-a2a0-e9abb952e814

position:3884835:1
position: 3884835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3885034:1
position: 3885034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bde0741b-46b8-4813-a2a0-e9abb952e814
SIO_000300: 1
SIO_000628: feature:3884835-3885034:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4937223..4937422
location: region:4937223-4937422:1
BFO_0000051: feature:4937223-4937422:1:region
SIO_000974: 9c3154eb-9ffc-4ee7-88b1-85d223e7c252

position:4937223:1
position: 4937223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4937422:1
position: 4937422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c3154eb-9ffc-4ee7-88b1-85d223e7c252
SIO_000300: 1
SIO_000628: feature:4937223-4937422:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15171755..15171954
location: region:15171755-15171954:1
BFO_0000051: feature:15171755-15171954:1:region
SIO_000974: 28720413-c65c-4b95-9f3d-43dda572ebf0

position:15171755:1
position: 15171755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15171954:1
position: 15171954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

28720413-c65c-4b95-9f3d-43dda572ebf0
SIO_000300: 1
SIO_000628: feature:15171755-15171954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15597026..15597225
location: region:15597026-15597225:1
BFO_0000051: feature:15597026-15597225:1:region
SIO_000974: 5bdb077c-2d8c-4969-bf5c-0d098f644e68

position:15597026:1
position: 15597026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15597225:1
position: 15597225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5bdb077c-2d8c-4969-bf5c-0d098f644e68
SIO_000300: 1
SIO_000628: feature:15597026-15597225:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16235976..16236175
location: region:16235976-16236175:1
BFO_0000051: feature:16235976-16236175:1:region
SIO_000974: b5a80c6c-0403-4813-a7d8-bccc4871a86e

position:16235976:1
position: 16235976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16236175:1
position: 16236175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b5a80c6c-0403-4813-a7d8-bccc4871a86e
SIO_000300: 1
SIO_000628: feature:16235976-16236175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18004078..18004277
location: region:18004078-18004277:1
BFO_0000051: feature:18004078-18004277:1:region
SIO_000974: 46001805-b968-4b44-b1b4-d5f494586678

position:18004078:1
position: 18004078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18004277:1
position: 18004277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

46001805-b968-4b44-b1b4-d5f494586678
SIO_000300: 1
SIO_000628: feature:18004078-18004277:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22335278..22335477
location: region:22335278-22335477:1
BFO_0000051: feature:22335278-22335477:1:region
SIO_000974: ff54b885-de77-4efa-9c54-95a4037ad517

position:22335278:1
position: 22335278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22335477:1
position: 22335477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff54b885-de77-4efa-9c54-95a4037ad517
SIO_000300: 1
SIO_000628: feature:22335278-22335477:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 21.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 21.
sequence version: OW386558.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29809913
topology: linear
RO_0000086: SO_0000987
location: 1..29809913
location: region:1-29809913:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29809913:1
position: 29809913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29809913:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1006344..1006543
location: region:1006344-1006543:1
BFO_0000051: feature:1006344-1006543:1:region
SIO_000974: ced6cf29-fda4-4721-84f7-c97d0b1ba34e

position:1006344:1
position: 1006344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006543:1
position: 1006543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ced6cf29-fda4-4721-84f7-c97d0b1ba34e
SIO_000300: 1
SIO_000628: feature:1006344-1006543:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6297137..6297336
location: region:6297137-6297336:1
BFO_0000051: feature:6297137-6297336:1:region
SIO_000974: 0314700f-f688-4e13-9c87-e906e16e6865

position:6297137:1
position: 6297137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6297336:1
position: 6297336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0314700f-f688-4e13-9c87-e906e16e6865
SIO_000300: 1
SIO_000628: feature:6297137-6297336:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11305529..11305728
location: region:11305529-11305728:1
BFO_0000051: feature:11305529-11305728:1:region
SIO_000974: d427ec92-da76-46e8-afc4-99b1273ae2ef

position:11305529:1
position: 11305529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11305728:1
position: 11305728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d427ec92-da76-46e8-afc4-99b1273ae2ef
SIO_000300: 1
SIO_000628: feature:11305529-11305728:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11766040..11766239
location: region:11766040-11766239:1
BFO_0000051: feature:11766040-11766239:1:region
SIO_000974: 5a58d096-312d-4d37-870a-ccea9afe98bc

position:11766040:1
position: 11766040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11766239:1
position: 11766239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5a58d096-312d-4d37-870a-ccea9afe98bc
SIO_000300: 1
SIO_000628: feature:11766040-11766239:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12582618..12582817
location: region:12582618-12582817:1
BFO_0000051: feature:12582618-12582817:1:region
SIO_000974: ee23638c-99d9-43b3-8688-a3f05a9aaffa

position:12582618:1
position: 12582618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12582817:1
position: 12582817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee23638c-99d9-43b3-8688-a3f05a9aaffa
SIO_000300: 1
SIO_000628: feature:12582618-12582817:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18265206..18265405
location: region:18265206-18265405:1
BFO_0000051: feature:18265206-18265405:1:region
SIO_000974: 6b1d250c-2973-4ebc-8b33-59afa87416d4

position:18265206:1
position: 18265206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18265405:1
position: 18265405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b1d250c-2973-4ebc-8b33-59afa87416d4
SIO_000300: 1
SIO_000628: feature:18265206-18265405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20696443..20696642
location: region:20696443-20696642:1
BFO_0000051: feature:20696443-20696642:1:region
SIO_000974: d61a0639-41d3-4f05-b170-c2461000a575

position:20696443:1
position: 20696443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20696642:1
position: 20696642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d61a0639-41d3-4f05-b170-c2461000a575
SIO_000300: 1
SIO_000628: feature:20696443-20696642:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20798676..20798875
location: region:20798676-20798875:1
BFO_0000051: feature:20798676-20798875:1:region
SIO_000974: 01448bb1-3254-40c5-a68c-548bdf95828d

position:20798676:1
position: 20798676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20798875:1
position: 20798875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01448bb1-3254-40c5-a68c-548bdf95828d
SIO_000300: 1
SIO_000628: feature:20798676-20798875:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26004876..26005075
location: region:26004876-26005075:1
BFO_0000051: feature:26004876-26005075:1:region
SIO_000974: 19466c79-475a-44a9-84f8-1fbbe7ee8b63

position:26004876:1
position: 26004876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26005075:1
position: 26005075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19466c79-475a-44a9-84f8-1fbbe7ee8b63
SIO_000300: 1
SIO_000628: feature:26004876-26005075:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27095349..27095548
location: region:27095349-27095548:1
BFO_0000051: feature:27095349-27095548:1:region
SIO_000974: 45112b38-ad83-47b5-b1ea-6d9b3f8af684

position:27095349:1
position: 27095349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27095548:1
position: 27095548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45112b38-ad83-47b5-b1ea-6d9b3f8af684
SIO_000300: 1
SIO_000628: feature:27095349-27095548:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28105963..28106162
location: region:28105963-28106162:1
BFO_0000051: feature:28105963-28106162:1:region
SIO_000974: 03be4b77-b322-4aea-8cdb-c38232d27d9e

position:28105963:1
position: 28105963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28106162:1
position: 28106162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03be4b77-b322-4aea-8cdb-c38232d27d9e
SIO_000300: 1
SIO_000628: feature:28105963-28106162:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 22.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 22.
sequence version: OW386559.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 28061381
topology: linear
RO_0000086: SO_0000987
location: 1..28061381
location: region:1-28061381:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28061381:1
position: 28061381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28061381:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 173448..173647
location: region:173448-173647:1
BFO_0000051: feature:173448-173647:1:region
SIO_000974: 6483831e-928e-4b94-bc2c-0f8001dec711

position:173448:1
position: 173448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173647:1
position: 173647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6483831e-928e-4b94-bc2c-0f8001dec711
SIO_000300: 1
SIO_000628: feature:173448-173647:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5568064..5568263
location: region:5568064-5568263:1
BFO_0000051: feature:5568064-5568263:1:region
SIO_000974: 826bad34-0d7a-4ef1-bbed-e5ddeda363b3

position:5568064:1
position: 5568064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5568263:1
position: 5568263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

826bad34-0d7a-4ef1-bbed-e5ddeda363b3
SIO_000300: 1
SIO_000628: feature:5568064-5568263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11919148..11919347
location: region:11919148-11919347:1
BFO_0000051: feature:11919148-11919347:1:region
SIO_000974: f701a9ba-aea8-4b2e-bffe-ef248e7f08c3

position:11919148:1
position: 11919148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11919347:1
position: 11919347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f701a9ba-aea8-4b2e-bffe-ef248e7f08c3
SIO_000300: 1
SIO_000628: feature:11919148-11919347:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 23.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 23.
sequence version: OW386560.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 28001913
topology: linear
RO_0000086: SO_0000987
location: 1..28001913
location: region:1-28001913:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28001913:1
position: 28001913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28001913:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6006001..6006200
location: region:6006001-6006200:1
BFO_0000051: feature:6006001-6006200:1:region
SIO_000974: 908ad301-80b4-492e-9d6d-b6ac4c936a4f

position:6006001:1
position: 6006001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6006200:1
position: 6006200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6006001-6006200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8869826..8870025
location: region:8869826-8870025:1
BFO_0000051: feature:8869826-8870025:1:region
SIO_000974: aeea6c1a-748a-4bd3-b7ea-a8c3c1e7079f

position:8869826:1
position: 8869826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8870025:1
position: 8870025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8869826-8870025:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9768915..9769114
location: region:9768915-9769114:1
BFO_0000051: feature:9768915-9769114:1:region
SIO_000974: 4bcef5c8-a35e-42c6-b113-90a44ba175c7

position:9768915:1
position: 9768915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9769114:1
position: 9769114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4bcef5c8-a35e-42c6-b113-90a44ba175c7
SIO_000300: 1
SIO_000628: feature:9768915-9769114:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9807467..9807666
location: region:9807467-9807666:1
BFO_0000051: feature:9807467-9807666:1:region
SIO_000974: e5d0b326-d1be-4443-ab9f-bf384afff48e

position:9807467:1
position: 9807467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9807666:1
position: 9807666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5d0b326-d1be-4443-ab9f-bf384afff48e
SIO_000300: 1
SIO_000628: feature:9807467-9807666:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9850453..9850652
location: region:9850453-9850652:1
BFO_0000051: feature:9850453-9850652:1:region
SIO_000974: 88b38952-8dde-472a-92bd-e5559c3febbc

position:9850453:1
position: 9850453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9850652:1
position: 9850652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88b38952-8dde-472a-92bd-e5559c3febbc
SIO_000300: 1
SIO_000628: feature:9850453-9850652:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16092770..16092969
location: region:16092770-16092969:1
BFO_0000051: feature:16092770-16092969:1:region
SIO_000974: ecf59448-c650-4f35-afd1-6ecabc1751d8

position:16092770:1
position: 16092770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16092969:1
position: 16092969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ecf59448-c650-4f35-afd1-6ecabc1751d8
SIO_000300: 1
SIO_000628: feature:16092770-16092969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27784749..27784948
location: region:27784749-27784948:1
BFO_0000051: feature:27784749-27784948:1:region
SIO_000974: dc42778c-21df-4ff6-8fda-97be9e104248

position:27784749:1
position: 27784749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27784948:1
position: 27784948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc42778c-21df-4ff6-8fda-97be9e104248
SIO_000300: 1
SIO_000628: feature:27784749-27784948:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 24.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 24.
sequence version: OW386561.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23677478
topology: linear
RO_0000086: SO_0000987
location: 1..23677478
location: region:1-23677478:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23677478:1
position: 23677478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23677478:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 150472..150671
location: region:150472-150671:1
BFO_0000051: feature:150472-150671:1:region
SIO_000974: 44e56c8d-c6c3-42f4-9cf0-269eaa070fef

position:150472:1
position: 150472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150671:1
position: 150671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44e56c8d-c6c3-42f4-9cf0-269eaa070fef
SIO_000300: 1
SIO_000628: feature:150472-150671:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10640672..10640871
location: region:10640672-10640871:1
BFO_0000051: feature:10640672-10640871:1:region
SIO_000974: cdb96736-2204-4760-8304-0f38038e833f

position:10640672:1
position: 10640672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10640871:1
position: 10640871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cdb96736-2204-4760-8304-0f38038e833f
SIO_000300: 1
SIO_000628: feature:10640672-10640871:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20325372..20325571
location: region:20325372-20325571:1
BFO_0000051: feature:20325372-20325571:1:region
SIO_000974: 8d3ad042-4d81-450f-9307-0e06221b7328

position:20325372:1
position: 20325372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20325571:1
position: 20325571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d3ad042-4d81-450f-9307-0e06221b7328
SIO_000300: 1
SIO_000628: feature:20325372-20325571:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22436436..22436635
location: region:22436436-22436635:1
BFO_0000051: feature:22436436-22436635:1:region
SIO_000974: d84ba82d-cfa6-4e27-9556-c15a614892df

position:22436436:1
position: 22436436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22436635:1
position: 22436635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d84ba82d-cfa6-4e27-9556-c15a614892df
SIO_000300: 1
SIO_000628: feature:22436436-22436635:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 25.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 25.
sequence version: OW386562.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22469345
topology: linear
RO_0000086: SO_0000987
location: 1..22469345
location: region:1-22469345:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22469345:1
position: 22469345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22469345:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 210435..210634
location: region:210435-210634:1
BFO_0000051: feature:210435-210634:1:region
SIO_000974: 49a23cec-e6a0-4a13-8c12-7a9c2c9b932b

position:210435:1
position: 210435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210634:1
position: 210634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

49a23cec-e6a0-4a13-8c12-7a9c2c9b932b
SIO_000300: 1
SIO_000628: feature:210435-210634:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11618635..11618834
location: region:11618635-11618834:1
BFO_0000051: feature:11618635-11618834:1:region
SIO_000974: 3ff447ad-8f26-4920-84fe-69dedab90c84

position:11618635:1
position: 11618635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11618834:1
position: 11618834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ff447ad-8f26-4920-84fe-69dedab90c84
SIO_000300: 1
SIO_000628: feature:11618635-11618834:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13751825..13752024
location: region:13751825-13752024:1
BFO_0000051: feature:13751825-13752024:1:region
SIO_000974: 5aae3278-ed11-424b-a34f-1e1d83d640fb

position:13751825:1
position: 13751825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13752024:1
position: 13752024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5aae3278-ed11-424b-a34f-1e1d83d640fb
SIO_000300: 1
SIO_000628: feature:13751825-13752024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14249846..14250045
location: region:14249846-14250045:1
BFO_0000051: feature:14249846-14250045:1:region
SIO_000974: dc478ff6-8d34-4f44-bc16-772b484831d4

position:14249846:1
position: 14249846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14250045:1
position: 14250045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc478ff6-8d34-4f44-bc16-772b484831d4
SIO_000300: 1
SIO_000628: feature:14249846-14250045:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17677046..17677245
location: region:17677046-17677245:1
BFO_0000051: feature:17677046-17677245:1:region
SIO_000974: cffddcc3-05fd-4ba4-86b3-1f5281958d79

position:17677046:1
position: 17677046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17677245:1
position: 17677245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cffddcc3-05fd-4ba4-86b3-1f5281958d79
SIO_000300: 1
SIO_000628: feature:17677046-17677245:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17773246..17773445
location: region:17773246-17773445:1
BFO_0000051: feature:17773246-17773445:1:region
SIO_000974: 76a7dea4-f30a-41ce-a0d9-63eb9c12c263

position:17773246:1
position: 17773246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17773445:1
position: 17773445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76a7dea4-f30a-41ce-a0d9-63eb9c12c263
SIO_000300: 1
SIO_000628: feature:17773246-17773445:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17828744..17828943
location: region:17828744-17828943:1
BFO_0000051: feature:17828744-17828943:1:region
SIO_000974: dd1abb92-2618-4b94-b268-6a0179d9c81c

position:17828744:1
position: 17828744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17828943:1
position: 17828943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd1abb92-2618-4b94-b268-6a0179d9c81c
SIO_000300: 1
SIO_000628: feature:17828744-17828943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22447476..22447675
location: region:22447476-22447675:1
BFO_0000051: feature:22447476-22447675:1:region
SIO_000974: 6391a23d-43eb-474b-b637-cfa432c21551

position:22447476:1
position: 22447476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22447675:1
position: 22447675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6391a23d-43eb-474b-b637-cfa432c21551
SIO_000300: 1
SIO_000628: feature:22447476-22447675:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 26.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 26.
sequence version: OW386563.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20591287
topology: linear
RO_0000086: SO_0000987
location: 1..20591287
location: region:1-20591287:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20591287:1
position: 20591287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20591287:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 235618..235817
location: region:235618-235817:1
BFO_0000051: feature:235618-235817:1:region
SIO_000974: efba4529-0a86-40ef-b048-fea9fb0f008b

position:235618:1
position: 235618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235817:1
position: 235817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efba4529-0a86-40ef-b048-fea9fb0f008b
SIO_000300: 1
SIO_000628: feature:235618-235817:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1150469..1150668
location: region:1150469-1150668:1
BFO_0000051: feature:1150469-1150668:1:region
SIO_000974: 70638d96-7671-47a2-bd16-cdb0cfb48c67

position:1150469:1
position: 1150469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1150668:1
position: 1150668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

70638d96-7671-47a2-bd16-cdb0cfb48c67
SIO_000300: 1
SIO_000628: feature:1150469-1150668:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1373885..1374084
location: region:1373885-1374084:1
BFO_0000051: feature:1373885-1374084:1:region
SIO_000974: 373c938d-ec79-4bf8-9fb7-c058b7ac108e

position:1373885:1
position: 1373885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1374084:1
position: 1374084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

373c938d-ec79-4bf8-9fb7-c058b7ac108e
SIO_000300: 1
SIO_000628: feature:1373885-1374084:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1499572..1499771
location: region:1499572-1499771:1
BFO_0000051: feature:1499572-1499771:1:region
SIO_000974: 3a73ea28-5594-465a-968e-aa52d4c30409

position:1499572:1
position: 1499572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1499771:1
position: 1499771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a73ea28-5594-465a-968e-aa52d4c30409
SIO_000300: 1
SIO_000628: feature:1499572-1499771:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1613853..1614052
location: region:1613853-1614052:1
BFO_0000051: feature:1613853-1614052:1:region
SIO_000974: 0e66bf97-271b-4700-9fed-42313226b464

position:1613853:1
position: 1613853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1614052:1
position: 1614052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e66bf97-271b-4700-9fed-42313226b464
SIO_000300: 1
SIO_000628: feature:1613853-1614052:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2110487..2110686
location: region:2110487-2110686:1
BFO_0000051: feature:2110487-2110686:1:region
SIO_000974: eeb98d1b-f52f-4fb4-abd8-65c97b2a7477

position:2110487:1
position: 2110487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2110686:1
position: 2110686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eeb98d1b-f52f-4fb4-abd8-65c97b2a7477
SIO_000300: 1
SIO_000628: feature:2110487-2110686:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6978548..6978747
location: region:6978548-6978747:1
BFO_0000051: feature:6978548-6978747:1:region
SIO_000974: 6d43a3a3-3ddc-47a5-96f2-8fd2ea5f257d

position:6978548:1
position: 6978548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6978747:1
position: 6978747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d43a3a3-3ddc-47a5-96f2-8fd2ea5f257d
SIO_000300: 1
SIO_000628: feature:6978548-6978747:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11074494..11074693
location: region:11074494-11074693:1
BFO_0000051: feature:11074494-11074693:1:region
SIO_000974: 843ed171-57d3-4af2-8ccc-9339915f6e52

position:11074494:1
position: 11074494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11074693:1
position: 11074693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

843ed171-57d3-4af2-8ccc-9339915f6e52
SIO_000300: 1
SIO_000628: feature:11074494-11074693:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18249203..18249402
location: region:18249203-18249402:1
BFO_0000051: feature:18249203-18249402:1:region
SIO_000974: eda3a5f7-2c87-4d8e-9d5b-e58410e18737

position:18249203:1
position: 18249203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18249402:1
position: 18249402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eda3a5f7-2c87-4d8e-9d5b-e58410e18737
SIO_000300: 1
SIO_000628: feature:18249203-18249402:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18746226..18746425
location: region:18746226-18746425:1
BFO_0000051: feature:18746226-18746425:1:region
SIO_000974: a42f44b9-87a2-4c4f-9988-9430e4a826c2

position:18746226:1
position: 18746226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18746425:1
position: 18746425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a42f44b9-87a2-4c4f-9988-9430e4a826c2
SIO_000300: 1
SIO_000628: feature:18746226-18746425:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19253605..19253804
location: region:19253605-19253804:1
BFO_0000051: feature:19253605-19253804:1:region
SIO_000974: 45e33021-da78-49c8-8e36-4e07d6681226

position:19253605:1
position: 19253605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19253804:1
position: 19253804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45e33021-da78-49c8-8e36-4e07d6681226
SIO_000300: 1
SIO_000628: feature:19253605-19253804:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 27.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 27.
sequence version: OW386564.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19352389
topology: linear
RO_0000086: SO_0000987
location: 1..19352389
location: region:1-19352389:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19352389:1
position: 19352389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19352389:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1168001..1168200
location: region:1168001-1168200:1
BFO_0000051: feature:1168001-1168200:1:region
SIO_000974: a779ab44-808a-4db5-892f-2dbd3c33de0f

position:1168001:1
position: 1168001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1168200:1
position: 1168200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a779ab44-808a-4db5-892f-2dbd3c33de0f
SIO_000300: 1
SIO_000628: feature:1168001-1168200:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 28.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 28.
sequence version: OW386565.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18934950
topology: linear
RO_0000086: SO_0000987
location: 1..18934950
location: region:1-18934950:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18934950:1
position: 18934950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18934950:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3795320..3795519
location: region:3795320-3795519:1
BFO_0000051: feature:3795320-3795519:1:region
SIO_000974: b440f3d1-d34b-4039-9f93-f460c77e03a0

position:3795320:1
position: 3795320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3795519:1
position: 3795519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b440f3d1-d34b-4039-9f93-f460c77e03a0
SIO_000300: 1
SIO_000628: feature:3795320-3795519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9073059..9073258
location: region:9073059-9073258:1
BFO_0000051: feature:9073059-9073258:1:region
SIO_000974: 86168ef0-ed1c-4463-bf14-4ba9eb4e0271

position:9073059:1
position: 9073059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9073258:1
position: 9073258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86168ef0-ed1c-4463-bf14-4ba9eb4e0271
SIO_000300: 1
SIO_000628: feature:9073059-9073258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9151878..9152077
location: region:9151878-9152077:1
BFO_0000051: feature:9151878-9152077:1:region
SIO_000974: 8a5c5894-bca9-4d70-8039-4cc9a9693584

position:9151878:1
position: 9151878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9152077:1
position: 9152077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a5c5894-bca9-4d70-8039-4cc9a9693584
SIO_000300: 1
SIO_000628: feature:9151878-9152077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10835520..10835719
location: region:10835520-10835719:1
BFO_0000051: feature:10835520-10835719:1:region
SIO_000974: d9faecbe-06fc-49e4-9e8d-84cb9a8f08bf

position:10835520:1
position: 10835520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10835719:1
position: 10835719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9faecbe-06fc-49e4-9e8d-84cb9a8f08bf
SIO_000300: 1
SIO_000628: feature:10835520-10835719:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1271742
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16405683..16405882
location: region:16405683-16405882:1
BFO_0000051: feature:16405683-16405882:1:region
SIO_000974: 652e46d6-6e8a-4cad-9e27-8465b53d126d

position:16405683:1
position: 16405683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16405882:1
position: 16405882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

652e46d6-6e8a-4cad-9e27-8465b53d126d
SIO_000300: 1
SIO_000628: feature:16405683-16405882:1:region

Glyphotaelius pellucidus genome assembly, chromosome: 29.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, chromosome: 29.
sequence version: OW386566.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18422727
topology: linear
RO_0000086: SO_0000987
location: 1..18422727
location: region:1-18422727:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18422727:1
position: 18422727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18422727:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
chromosome: 29
mol type: genomic DNA

Glyphotaelius pellucidus genome assembly, organelle: mitochondrion.
type: Entry
definition: Glyphotaelius pellucidus genome assembly, organelle: mitochondrion.
sequence version: OW386567.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: mitochondrion Glyphotaelius pellucidus
organism: Glyphotaelius pellucidus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Glyphotaelius.
reference: 1
comment: The assembly iiGlyPell1.1 is based on 37x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16043
topology: linear
RO_0000086: SO_0000987
location: 1..16043
location: region:1-16043:1
RO_0002162: 1271742

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16043:1
position: 16043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16043:1:source
BFO_0000050: sequence
organism: Glyphotaelius pellucidus
organelle: mitochondrion
mol type: genomic DNA

Nowickia ferox genome assembly, chromosome: 1.
type: Entry
definition: Nowickia ferox genome assembly, chromosome: 1.
sequence version: OW387023.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Nowickia ferox
organism: Nowickia ferox
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Tachininae; Tachinini; Nowickia.
reference: 1
comment: The assembly idNowFero1.1 is based on 41x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the assembly was analysed and manually improved\nusing\nrapid curation. Chromosome-scale scaffolds confirmed by the Hi-C\ndata have\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 154429712
topology: linear
RO_0000086: SO_0000987
location: 1..154429712
location: region:1-154429712:1
RO_0002162: 613196

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154429712:1
position: 154429712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-154429712:1:source
BFO_0000050: sequence
organism: Nowickia ferox
chromosome: 1
mol type: genomic DNA

613196
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43576227..43576426
location: region:43576227-43576426:1
BFO_0000051: feature:43576227-43576426:1:region
SIO_000974: f0849157-2ab1-47cb-895b-272a61ce8493

position:43576227:1
position: 43576227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43576426:1
position: 43576426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0849157-2ab1-47cb-895b-272a61ce8493
SIO_000300: 1
SIO_000628: feature:43576227-43576426:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52413250..52413449
location: region:52413250-52413449:1
BFO_0000051: feature:52413250-52413449:1:region
SIO_000974: 34c30515-205d-421d-bf7a-e50f465c0e01

position:52413250:1
position: 52413250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52413449:1
position: 52413449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34c30515-205d-421d-bf7a-e50f465c0e01
SIO_000300: 1
SIO_000628: feature:52413250-52413449:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53195695..53195894
location: region:53195695-53195894:1
BFO_0000051: feature:53195695-53195894:1:region
SIO_000974: d213f464-eb52-4eff-bdaf-6ff523ba9636

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BFO_0000050: sequence
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BFO_0000050: sequence
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gap type: unknown
BFO_0000050: sequence
location: 76608029..76608228
location: region:76608029-76608228:1
BFO_0000051: feature:76608029-76608228:1:region
SIO_000974: d19fa749-57a7-479c-9b1c-d2633df518dd

position:76608029:1
position: 76608029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76608228:1
position: 76608228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d19fa749-57a7-479c-9b1c-d2633df518dd
SIO_000300: 1
SIO_000628: feature:76608029-76608228:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 77563248..77563447
location: region:77563248-77563447:1
BFO_0000051: feature:77563248-77563447:1:region
SIO_000974: 3ec7e7b1-2c5c-4414-b551-b0e36ce940ad

position:77563248:1
position: 77563248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77563447:1
position: 77563447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ec7e7b1-2c5c-4414-b551-b0e36ce940ad
SIO_000300: 1
SIO_000628: feature:77563248-77563447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 78659596..78659795
location: region:78659596-78659795:1
BFO_0000051: feature:78659596-78659795:1:region
SIO_000974: 27d9c7d3-53cd-4877-a930-300cd7b5dc7d

position:78659596:1
position: 78659596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78659795:1
position: 78659795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27d9c7d3-53cd-4877-a930-300cd7b5dc7d
SIO_000300: 1
SIO_000628: feature:78659596-78659795:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 79117599..79117798
location: region:79117599-79117798:1
BFO_0000051: feature:79117599-79117798:1:region
SIO_000974: 3f1a05d2-8b3d-4cef-acab-8edc18ba7323

position:79117599:1
position: 79117599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79117798:1
position: 79117798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3f1a05d2-8b3d-4cef-acab-8edc18ba7323
SIO_000300: 1
SIO_000628: feature:79117599-79117798:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 79492345..79492544
location: region:79492345-79492544:1
BFO_0000051: feature:79492345-79492544:1:region
SIO_000974: 1c4056d0-ff4a-4090-9a65-5990beefa1d4

position:79492345:1
position: 79492345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79492544:1
position: 79492544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c4056d0-ff4a-4090-9a65-5990beefa1d4
SIO_000300: 1
SIO_000628: feature:79492345-79492544:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 79954386..79954585
location: region:79954386-79954585:1
BFO_0000051: feature:79954386-79954585:1:region
SIO_000974: 6482df7e-da21-4ef4-9caf-6cdec58d315a

position:79954386:1
position: 79954386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79954585:1
position: 79954585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6482df7e-da21-4ef4-9caf-6cdec58d315a
SIO_000300: 1
SIO_000628: feature:79954386-79954585:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 82732589..82732788
location: region:82732589-82732788:1
BFO_0000051: feature:82732589-82732788:1:region
SIO_000974: 3c9b2d9f-6883-4035-afa1-b948bde20d66

position:82732589:1
position: 82732589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82732788:1
position: 82732788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c9b2d9f-6883-4035-afa1-b948bde20d66
SIO_000300: 1
SIO_000628: feature:82732589-82732788:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 84498429..84498628
location: region:84498429-84498628:1
BFO_0000051: feature:84498429-84498628:1:region
SIO_000974: c0c00a1f-c715-42fa-89aa-6ddc4fb7c6e6

position:84498429:1
position: 84498429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84498628:1
position: 84498628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0c00a1f-c715-42fa-89aa-6ddc4fb7c6e6
SIO_000300: 1
SIO_000628: feature:84498429-84498628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 613196
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 122105020..122105219
location: region:122105020-122105219:1
BFO_0000051: feature:122105020-122105219:1:region
SIO_000974: 514495ab-b53c-4360-869f-1fc2dbdd7463

position:122105020:1
position: 122105020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122105219:1
position: 122105219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

514495ab-b53c-4360-869f-1fc2dbdd7463
SIO_000300: 1
SIO_000628: feature:122105020-122105219:1:region