Lepidonotus clava genome assembly, chromosome: 12.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 12.
sequence version: OW387144.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 51728667
topology: linear
RO_0000086: SO_0000987
location: 1..51728667
location: region:1-51728667:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51728667:1
position: 51728667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-51728667:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 12
mol type: genomic DNA

1210411
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8369679..8369878
location: region:8369679-8369878:1
BFO_0000051: feature:8369679-8369878:1:region
SIO_000974: 1116491a-9282-4a98-9279-e9039fe32767

position:8369679:1
position: 8369679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8369878:1
position: 8369878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1116491a-9282-4a98-9279-e9039fe32767
SIO_000300: 1
SIO_000628: feature:8369679-8369878:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8397420..8397619
location: region:8397420-8397619:1
BFO_0000051: feature:8397420-8397619:1:region
SIO_000974: 3e3a9c5f-d722-45bd-8d73-917ceeff48d2

position:8397420:1
position: 8397420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8397619:1
position: 8397619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8397420-8397619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8802251..8802450
location: region:8802251-8802450:1
BFO_0000051: feature:8802251-8802450:1:region
SIO_000974: e23db3bf-bf01-496d-95db-112767b0df6d

position:8802251:1
position: 8802251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8802450:1
position: 8802450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e23db3bf-bf01-496d-95db-112767b0df6d
SIO_000300: 1
SIO_000628: feature:8802251-8802450:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19235427..19235626
location: region:19235427-19235626:1
BFO_0000051: feature:19235427-19235626:1:region
SIO_000974: d3d6404d-ad96-4ed5-99c1-7564b32f0f94

position:19235427:1
position: 19235427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19235626:1
position: 19235626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19235427-19235626:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19370446..19370645
location: region:19370446-19370645:1
BFO_0000051: feature:19370446-19370645:1:region
SIO_000974: 91308b20-6a7a-444d-a62b-37c682cb18e1

position:19370446:1
position: 19370446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19370645:1
position: 19370645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19370446-19370645:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22600655..22600854
location: region:22600655-22600854:1
BFO_0000051: feature:22600655-22600854:1:region
SIO_000974: 18d21283-b7ee-435d-9a80-af831bb03865

position:22600655:1
position: 22600655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22600854:1
position: 22600854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:22600655-22600854:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24611397..24611596
location: region:24611397-24611596:1
BFO_0000051: feature:24611397-24611596:1:region
SIO_000974: c0a51dda-f0e7-423d-8e2b-70e9615ecb3d

position:24611397:1
position: 24611397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24611596:1
position: 24611596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0a51dda-f0e7-423d-8e2b-70e9615ecb3d
SIO_000300: 1
SIO_000628: feature:24611397-24611596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24653776..24653975
location: region:24653776-24653975:1
BFO_0000051: feature:24653776-24653975:1:region
SIO_000974: 6030a8bf-9f80-48ec-a650-650f12291ff8

position:24653776:1
position: 24653776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24653975:1
position: 24653975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24653776-24653975:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24709621..24709820
location: region:24709621-24709820:1
BFO_0000051: feature:24709621-24709820:1:region
SIO_000974: a1b62ccc-e485-4cbd-9dae-af28c675a958

position:24709621:1
position: 24709621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24709820:1
position: 24709820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24709621-24709820:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36914821..36915020
location: region:36914821-36915020:1
BFO_0000051: feature:36914821-36915020:1:region
SIO_000974: 52e756af-6f10-44c9-a665-190b7cc63ce6

position:36914821:1
position: 36914821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36915020:1
position: 36915020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52e756af-6f10-44c9-a665-190b7cc63ce6
SIO_000300: 1
SIO_000628: feature:36914821-36915020:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39645472..39645671
location: region:39645472-39645671:1
BFO_0000051: feature:39645472-39645671:1:region
SIO_000974: 9cc8ff07-c126-4e88-9115-336ed5f2178a

position:39645472:1
position: 39645472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39645671:1
position: 39645671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39645472-39645671:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39716002..39716201
location: region:39716002-39716201:1
BFO_0000051: feature:39716002-39716201:1:region
SIO_000974: 2bd22ba6-d9ed-4bab-8327-477863ebb2bd

position:39716002:1
position: 39716002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39716201:1
position: 39716201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39716002-39716201:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40624328..40624527
location: region:40624328-40624527:1
BFO_0000051: feature:40624328-40624527:1:region
SIO_000974: 480a2df8-9feb-44dc-9b7e-7a0efc06320c

position:40624328:1
position: 40624328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40624527:1
position: 40624527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:40624328-40624527:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40681305..40681504
location: region:40681305-40681504:1
BFO_0000051: feature:40681305-40681504:1:region
SIO_000974: e82a3eae-d0c9-4961-b967-693ff23a4bac

position:40681305:1
position: 40681305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40681504:1
position: 40681504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e82a3eae-d0c9-4961-b967-693ff23a4bac
SIO_000300: 1
SIO_000628: feature:40681305-40681504:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44827821..44828020
location: region:44827821-44828020:1
BFO_0000051: feature:44827821-44828020:1:region
SIO_000974: 4ced9816-047a-45bf-bd05-da58ecf471b6

position:44827821:1
position: 44827821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44828020:1
position: 44828020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:44827821-44828020:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45857634..45857833
location: region:45857634-45857833:1
BFO_0000051: feature:45857634-45857833:1:region
SIO_000974: 386cdecd-89ab-4618-b855-a62a559b39fc

position:45857634:1
position: 45857634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45857833:1
position: 45857833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

386cdecd-89ab-4618-b855-a62a559b39fc
SIO_000300: 1
SIO_000628: feature:45857634-45857833:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51334499..51334698
location: region:51334499-51334698:1
BFO_0000051: feature:51334499-51334698:1:region
SIO_000974: 34a3d010-a472-4771-8c86-8770a6b14fc8

position:51334499:1
position: 51334499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51334698:1
position: 51334698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34a3d010-a472-4771-8c86-8770a6b14fc8
SIO_000300: 1
SIO_000628: feature:51334499-51334698:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51555863..51556062
location: region:51555863-51556062:1
BFO_0000051: feature:51555863-51556062:1:region
SIO_000974: 261ab3ca-7757-4f92-beeb-b8600c337484

position:51555863:1
position: 51555863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51556062:1
position: 51556062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:51555863-51556062:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51643204..51643403
location: region:51643204-51643403:1
BFO_0000051: feature:51643204-51643403:1:region
SIO_000974: 55165605-3ee0-40e4-bc8b-dedeb072aee2

position:51643204:1
position: 51643204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51643403:1
position: 51643403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55165605-3ee0-40e4-bc8b-dedeb072aee2
SIO_000300: 1
SIO_000628: feature:51643204-51643403:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51670947..51671146
location: region:51670947-51671146:1
BFO_0000051: feature:51670947-51671146:1:region
SIO_000974: fce4cfdf-ee85-483a-b98e-b47e557260f3

position:51670947:1
position: 51670947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51671146:1
position: 51671146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:51670947-51671146:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51707252..51707451
location: region:51707252-51707451:1
BFO_0000051: feature:51707252-51707451:1:region
SIO_000974: 1568b588-2658-4788-8b06-16b9a605fe15

position:51707252:1
position: 51707252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51707451:1
position: 51707451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1568b588-2658-4788-8b06-16b9a605fe15
SIO_000300: 1
SIO_000628: feature:51707252-51707451:1:region

Lepidonotus clava genome assembly, chromosome: 13.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 13.
sequence version: OW387145.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 51086976
topology: linear
RO_0000086: SO_0000987
location: 1..51086976
location: region:1-51086976:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51086976:1
position: 51086976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-51086976:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14969..15168
location: region:14969-15168:1
BFO_0000051: feature:14969-15168:1:region
SIO_000974: 0a31f563-6b52-44a7-98c6-04aac7231a37

position:14969:1
position: 14969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15168:1
position: 15168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a31f563-6b52-44a7-98c6-04aac7231a37
SIO_000300: 1
SIO_000628: feature:14969-15168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42116..42315
location: region:42116-42315:1
BFO_0000051: feature:42116-42315:1:region
SIO_000974: d675621e-9ca5-4e1e-a30f-83b941e6084f

position:42116:1
position: 42116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42315:1
position: 42315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:42116-42315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 69259..69458
location: region:69259-69458:1
BFO_0000051: feature:69259-69458:1:region
SIO_000974: e87c956c-6da4-4b02-8304-4b27f950f964

position:69259:1
position: 69259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69458:1
position: 69458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e87c956c-6da4-4b02-8304-4b27f950f964
SIO_000300: 1
SIO_000628: feature:69259-69458:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 172624..172823
location: region:172624-172823:1
BFO_0000051: feature:172624-172823:1:region
SIO_000974: f2a5bc4a-9367-4573-ab18-fc7815495af1

position:172624:1
position: 172624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172823:1
position: 172823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2a5bc4a-9367-4573-ab18-fc7815495af1
SIO_000300: 1
SIO_000628: feature:172624-172823:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2524081..2524280
location: region:2524081-2524280:1
BFO_0000051: feature:2524081-2524280:1:region
SIO_000974: b31e5c7b-ec67-4efc-82f9-43fdf8278262

position:2524081:1
position: 2524081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2524280:1
position: 2524280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2524081-2524280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3038565..3038764
location: region:3038565-3038764:1
BFO_0000051: feature:3038565-3038764:1:region
SIO_000974: 3e39d9ae-26de-4fdc-b8e9-ba92810018a5

position:3038565:1
position: 3038565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3038764:1
position: 3038764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e39d9ae-26de-4fdc-b8e9-ba92810018a5
SIO_000300: 1
SIO_000628: feature:3038565-3038764:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4875940..4876139
location: region:4875940-4876139:1
BFO_0000051: feature:4875940-4876139:1:region
SIO_000974: 80230f9a-6512-4ee2-8401-bb307a895338

position:4875940:1
position: 4875940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4876139:1
position: 4876139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80230f9a-6512-4ee2-8401-bb307a895338
SIO_000300: 1
SIO_000628: feature:4875940-4876139:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4938000..4938199
location: region:4938000-4938199:1
BFO_0000051: feature:4938000-4938199:1:region
SIO_000974: 3c5aef69-e5c2-4b9b-a468-a241a24bcd9a

position:4938000:1
position: 4938000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4938199:1
position: 4938199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c5aef69-e5c2-4b9b-a468-a241a24bcd9a
SIO_000300: 1
SIO_000628: feature:4938000-4938199:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5000863..5001062
location: region:5000863-5001062:1
BFO_0000051: feature:5000863-5001062:1:region
SIO_000974: de1f8ef5-943a-4534-a673-eabecbbf973e

position:5000863:1
position: 5000863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5001062:1
position: 5001062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

de1f8ef5-943a-4534-a673-eabecbbf973e
SIO_000300: 1
SIO_000628: feature:5000863-5001062:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5029855..5030054
location: region:5029855-5030054:1
BFO_0000051: feature:5029855-5030054:1:region
SIO_000974: e680e208-ac8e-4df0-8faf-f58e9e622e21

position:5029855:1
position: 5029855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5030054:1
position: 5030054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e680e208-ac8e-4df0-8faf-f58e9e622e21
SIO_000300: 1
SIO_000628: feature:5029855-5030054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6563769..6563968
location: region:6563769-6563968:1
BFO_0000051: feature:6563769-6563968:1:region
SIO_000974: c7fcb95e-e00b-41aa-be38-b613d8c43b2c

position:6563769:1
position: 6563769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6563968:1
position: 6563968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7fcb95e-e00b-41aa-be38-b613d8c43b2c
SIO_000300: 1
SIO_000628: feature:6563769-6563968:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6878834..6879033
location: region:6878834-6879033:1
BFO_0000051: feature:6878834-6879033:1:region
SIO_000974: f3de49bf-750d-471c-ad8e-408d6aeabf80

position:6878834:1
position: 6878834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6879033:1
position: 6879033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f3de49bf-750d-471c-ad8e-408d6aeabf80
SIO_000300: 1
SIO_000628: feature:6878834-6879033:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7528961..7529160
location: region:7528961-7529160:1
BFO_0000051: feature:7528961-7529160:1:region
SIO_000974: 87669b25-a0f3-48b6-89b3-1d51eeb6bfb1

position:7528961:1
position: 7528961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7529160:1
position: 7529160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

87669b25-a0f3-48b6-89b3-1d51eeb6bfb1
SIO_000300: 1
SIO_000628: feature:7528961-7529160:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9175196..9175395
location: region:9175196-9175395:1
BFO_0000051: feature:9175196-9175395:1:region
SIO_000974: ceef34af-6c66-488a-8735-03b3b146feef

position:9175196:1
position: 9175196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9175395:1
position: 9175395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceef34af-6c66-488a-8735-03b3b146feef
SIO_000300: 1
SIO_000628: feature:9175196-9175395:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17520156..17520355
location: region:17520156-17520355:1
BFO_0000051: feature:17520156-17520355:1:region
SIO_000974: 0a0fab02-2469-4129-be12-aba68d386367

position:17520156:1
position: 17520156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17520355:1
position: 17520355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a0fab02-2469-4129-be12-aba68d386367
SIO_000300: 1
SIO_000628: feature:17520156-17520355:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24740875..24741074
location: region:24740875-24741074:1
BFO_0000051: feature:24740875-24741074:1:region
SIO_000974: ccf0fd6d-3189-4679-85ca-073987da467e

position:24740875:1
position: 24740875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24741074:1
position: 24741074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccf0fd6d-3189-4679-85ca-073987da467e
SIO_000300: 1
SIO_000628: feature:24740875-24741074:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28705514..28705713
location: region:28705514-28705713:1
BFO_0000051: feature:28705514-28705713:1:region
SIO_000974: 82785a3f-e7a7-4b86-bd85-d70cbd48a917

position:28705514:1
position: 28705514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28705713:1
position: 28705713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82785a3f-e7a7-4b86-bd85-d70cbd48a917
SIO_000300: 1
SIO_000628: feature:28705514-28705713:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31152387..31152586
location: region:31152387-31152586:1
BFO_0000051: feature:31152387-31152586:1:region
SIO_000974: e792c9ed-6a53-4494-88c0-731f8c5133a5

position:31152387:1
position: 31152387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31152586:1
position: 31152586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e792c9ed-6a53-4494-88c0-731f8c5133a5
SIO_000300: 1
SIO_000628: feature:31152387-31152586:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33255455..33255654
location: region:33255455-33255654:1
BFO_0000051: feature:33255455-33255654:1:region
SIO_000974: f3d39595-d142-496e-a0a1-018cef7f9c1c

position:33255455:1
position: 33255455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33255654:1
position: 33255654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f3d39595-d142-496e-a0a1-018cef7f9c1c
SIO_000300: 1
SIO_000628: feature:33255455-33255654:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35695549..35695748
location: region:35695549-35695748:1
BFO_0000051: feature:35695549-35695748:1:region
SIO_000974: 341308c6-19b3-4cb6-a883-629568a572d6

position:35695549:1
position: 35695549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35695748:1
position: 35695748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

341308c6-19b3-4cb6-a883-629568a572d6
SIO_000300: 1
SIO_000628: feature:35695549-35695748:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35752774..35752973
location: region:35752774-35752973:1
BFO_0000051: feature:35752774-35752973:1:region
SIO_000974: fbc14110-38ac-45bb-ab08-54bf44fdd9a5

position:35752774:1
position: 35752774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35752973:1
position: 35752973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbc14110-38ac-45bb-ab08-54bf44fdd9a5
SIO_000300: 1
SIO_000628: feature:35752774-35752973:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39059726..39059925
location: region:39059726-39059925:1
BFO_0000051: feature:39059726-39059925:1:region
SIO_000974: 17aa6557-bef3-4c5c-b2bc-dd74e0509fba

position:39059726:1
position: 39059726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39059925:1
position: 39059925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17aa6557-bef3-4c5c-b2bc-dd74e0509fba
SIO_000300: 1
SIO_000628: feature:39059726-39059925:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40200325..40200524
location: region:40200325-40200524:1
BFO_0000051: feature:40200325-40200524:1:region
SIO_000974: e778a9fb-af1c-4767-9585-466c917dad9c

position:40200325:1
position: 40200325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40200524:1
position: 40200524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e778a9fb-af1c-4767-9585-466c917dad9c
SIO_000300: 1
SIO_000628: feature:40200325-40200524:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47031350..47031549
location: region:47031350-47031549:1
BFO_0000051: feature:47031350-47031549:1:region
SIO_000974: bb230d03-5ae0-4b41-88bf-306b172b0e92

position:47031350:1
position: 47031350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47031549:1
position: 47031549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb230d03-5ae0-4b41-88bf-306b172b0e92
SIO_000300: 1
SIO_000628: feature:47031350-47031549:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47059804..47060003
location: region:47059804-47060003:1
BFO_0000051: feature:47059804-47060003:1:region
SIO_000974: 8983b292-1369-4072-bc52-b747ee130da2

position:47059804:1
position: 47059804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47060003:1
position: 47060003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8983b292-1369-4072-bc52-b747ee130da2
SIO_000300: 1
SIO_000628: feature:47059804-47060003:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47469513..47469712
location: region:47469513-47469712:1
BFO_0000051: feature:47469513-47469712:1:region
SIO_000974: 9ea9bc71-3054-4382-82f9-e1ebfceda6ad

position:47469513:1
position: 47469513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47469712:1
position: 47469712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9ea9bc71-3054-4382-82f9-e1ebfceda6ad
SIO_000300: 1
SIO_000628: feature:47469513-47469712:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47899343..47899542
location: region:47899343-47899542:1
BFO_0000051: feature:47899343-47899542:1:region
SIO_000974: d7026f74-72bb-4080-97dd-d6b12020d9b3

position:47899343:1
position: 47899343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47899542:1
position: 47899542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7026f74-72bb-4080-97dd-d6b12020d9b3
SIO_000300: 1
SIO_000628: feature:47899343-47899542:1:region

Lepidonotus clava genome assembly, chromosome: 14.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 14.
sequence version: OW387146.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 50058431
topology: linear
RO_0000086: SO_0000987
location: 1..50058431
location: region:1-50058431:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50058431:1
position: 50058431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-50058431:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 309036..309235
location: region:309036-309235:1
BFO_0000051: feature:309036-309235:1:region
SIO_000974: 4759dd3b-6e72-4c36-a452-792572a9f875

position:309036:1
position: 309036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309235:1
position: 309235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4759dd3b-6e72-4c36-a452-792572a9f875
SIO_000300: 1
SIO_000628: feature:309036-309235:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13203055..13203254
location: region:13203055-13203254:1
BFO_0000051: feature:13203055-13203254:1:region
SIO_000974: 8a708613-99f5-4d60-a394-09f217f7de88

position:13203055:1
position: 13203055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13203254:1
position: 13203254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a708613-99f5-4d60-a394-09f217f7de88
SIO_000300: 1
SIO_000628: feature:13203055-13203254:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14253655..14253854
location: region:14253655-14253854:1
BFO_0000051: feature:14253655-14253854:1:region
SIO_000974: 7b35e849-8e68-4300-8d2f-912b1ceafd11

position:14253655:1
position: 14253655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14253854:1
position: 14253854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b35e849-8e68-4300-8d2f-912b1ceafd11
SIO_000300: 1
SIO_000628: feature:14253655-14253854:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14946133..14946332
location: region:14946133-14946332:1
BFO_0000051: feature:14946133-14946332:1:region
SIO_000974: c4fd3e4b-ea74-4809-b550-3f9c4b0ce708

position:14946133:1
position: 14946133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14946332:1
position: 14946332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4fd3e4b-ea74-4809-b550-3f9c4b0ce708
SIO_000300: 1
SIO_000628: feature:14946133-14946332:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19274223..19274422
location: region:19274223-19274422:1
BFO_0000051: feature:19274223-19274422:1:region
SIO_000974: 9a694516-2bee-4c8f-ba0e-2a3362a92d56

position:19274223:1
position: 19274223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19274422:1
position: 19274422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a694516-2bee-4c8f-ba0e-2a3362a92d56
SIO_000300: 1
SIO_000628: feature:19274223-19274422:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19344311..19344510
location: region:19344311-19344510:1
BFO_0000051: feature:19344311-19344510:1:region
SIO_000974: d386fd25-c135-4e9e-8905-f3325303b5cd

position:19344311:1
position: 19344311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19344510:1
position: 19344510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d386fd25-c135-4e9e-8905-f3325303b5cd
SIO_000300: 1
SIO_000628: feature:19344311-19344510:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20026258..20026457
location: region:20026258-20026457:1
BFO_0000051: feature:20026258-20026457:1:region
SIO_000974: 916f67c7-d74c-4950-a0f7-8f133e68f288

position:20026258:1
position: 20026258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20026457:1
position: 20026457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

916f67c7-d74c-4950-a0f7-8f133e68f288
SIO_000300: 1
SIO_000628: feature:20026258-20026457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21707055..21707254
location: region:21707055-21707254:1
BFO_0000051: feature:21707055-21707254:1:region
SIO_000974: 01b6df61-9ea0-4edf-a2f0-77473134d248

position:21707055:1
position: 21707055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21707254:1
position: 21707254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01b6df61-9ea0-4edf-a2f0-77473134d248
SIO_000300: 1
SIO_000628: feature:21707055-21707254:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23584262..23584461
location: region:23584262-23584461:1
BFO_0000051: feature:23584262-23584461:1:region
SIO_000974: 5b2f073f-13d8-46ea-8c77-6b628f666319

position:23584262:1
position: 23584262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23584461:1
position: 23584461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b2f073f-13d8-46ea-8c77-6b628f666319
SIO_000300: 1
SIO_000628: feature:23584262-23584461:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25547509..25547708
location: region:25547509-25547708:1
BFO_0000051: feature:25547509-25547708:1:region
SIO_000974: 522d6dd6-222d-426f-9c34-ac0a7794b075

position:25547509:1
position: 25547509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25547708:1
position: 25547708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

522d6dd6-222d-426f-9c34-ac0a7794b075
SIO_000300: 1
SIO_000628: feature:25547509-25547708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27185954..27186153
location: region:27185954-27186153:1
BFO_0000051: feature:27185954-27186153:1:region
SIO_000974: a7d53a05-50d2-4ed4-8912-3f7d365d6107

position:27185954:1
position: 27185954
reference: sequence
type: ForwardStrandPosition
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position:27186153:1
position: 27186153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a7d53a05-50d2-4ed4-8912-3f7d365d6107
SIO_000300: 1
SIO_000628: feature:27185954-27186153:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27201962..27202161
location: region:27201962-27202161:1
BFO_0000051: feature:27201962-27202161:1:region
SIO_000974: 98686da5-cddb-455b-94c5-1d34ca9a56db

position:27201962:1
position: 27201962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27202161:1
position: 27202161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:27201962-27202161:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28378314..28378513
location: region:28378314-28378513:1
BFO_0000051: feature:28378314-28378513:1:region
SIO_000974: ec5573ea-951e-4f06-a855-dcb38c30a4e7

position:28378314:1
position: 28378314
reference: sequence
type: ForwardStrandPosition
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position:28378513:1
position: 28378513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:28378314-28378513:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29036109..29036308
location: region:29036109-29036308:1
BFO_0000051: feature:29036109-29036308:1:region
SIO_000974: 26ae3a63-8d9b-4cef-a098-bb1355ac8c13

position:29036109:1
position: 29036109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29036308:1
position: 29036308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26ae3a63-8d9b-4cef-a098-bb1355ac8c13
SIO_000300: 1
SIO_000628: feature:29036109-29036308:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29136480..29136679
location: region:29136480-29136679:1
BFO_0000051: feature:29136480-29136679:1:region
SIO_000974: d70c76a1-cab1-4088-b149-cc6bb23d3c8b

position:29136480:1
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reference: sequence
type: ForwardStrandPosition
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position:29136679:1
position: 29136679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:29136480-29136679:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29477343..29477542
location: region:29477343-29477542:1
BFO_0000051: feature:29477343-29477542:1:region
SIO_000974: 062f30c0-b246-497e-b8a9-8536178a6d88

position:29477343:1
position: 29477343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29477542:1
position: 29477542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

062f30c0-b246-497e-b8a9-8536178a6d88
SIO_000300: 1
SIO_000628: feature:29477343-29477542:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29738131..29738330
location: region:29738131-29738330:1
BFO_0000051: feature:29738131-29738330:1:region
SIO_000974: 64f1ee9c-2ced-49be-b479-a76fa19038ac

position:29738131:1
position: 29738131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29738330:1
position: 29738330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:29738131-29738330:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29772783..29772982
location: region:29772783-29772982:1
BFO_0000051: feature:29772783-29772982:1:region
SIO_000974: 89e91135-bde1-4316-b4f4-64978680c1ce

position:29772783:1
position: 29772783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29772982:1
position: 29772982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:29772783-29772982:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29825070..29825269
location: region:29825070-29825269:1
BFO_0000051: feature:29825070-29825269:1:region
SIO_000974: f84e8dd0-cfb0-420e-b81c-7a661b36b3a9

position:29825070:1
position: 29825070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29825269:1
position: 29825269
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:29825070-29825269:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39642479..39642678
location: region:39642479-39642678:1
BFO_0000051: feature:39642479-39642678:1:region
SIO_000974: 67ca3318-6db5-4984-b9a7-3478c0d9e2b7

position:39642479:1
position: 39642479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39642678:1
position: 39642678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39642479-39642678:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40716442..40716641
location: region:40716442-40716641:1
BFO_0000051: feature:40716442-40716641:1:region
SIO_000974: dbb2be70-e545-4823-9b1a-ab596838d6b3

position:40716442:1
position: 40716442
reference: sequence
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type: ExactPosition

position:40716641:1
position: 40716641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:40716442-40716641:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44496642..44496841
location: region:44496642-44496841:1
BFO_0000051: feature:44496642-44496841:1:region
SIO_000974: 4d2d6cec-9c5e-4ff6-aa8c-f985cea3093b

position:44496642:1
position: 44496642
reference: sequence
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type: ExactPosition

position:44496841:1
position: 44496841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:44496642-44496841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46676226..46676425
location: region:46676226-46676425:1
BFO_0000051: feature:46676226-46676425:1:region
SIO_000974: e4629ba3-21c2-4950-85c6-87e9889978d8

position:46676226:1
position: 46676226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46676425:1
position: 46676425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4629ba3-21c2-4950-85c6-87e9889978d8
SIO_000300: 1
SIO_000628: feature:46676226-46676425:1:region

Lepidonotus clava genome assembly, chromosome: 15.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 15.
sequence version: OW387147.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 49309449
topology: linear
RO_0000086: SO_0000987
location: 1..49309449
location: region:1-49309449:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49309449:1
position: 49309449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-49309449:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1402375..1402574
location: region:1402375-1402574:1
BFO_0000051: feature:1402375-1402574:1:region
SIO_000974: 620b9aa4-226e-4810-944e-eb9c6c4c99f2

position:1402375:1
position: 1402375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1402574:1
position: 1402574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

620b9aa4-226e-4810-944e-eb9c6c4c99f2
SIO_000300: 1
SIO_000628: feature:1402375-1402574:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2391077..2391276
location: region:2391077-2391276:1
BFO_0000051: feature:2391077-2391276:1:region
SIO_000974: 9c5f6552-21be-47b6-97b9-bf50c918232d

position:2391077:1
position: 2391077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2391276:1
position: 2391276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2391077-2391276:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3365978..3366177
location: region:3365978-3366177:1
BFO_0000051: feature:3365978-3366177:1:region
SIO_000974: f5ebd958-b7c9-4f12-b098-45e559deae83

position:3365978:1
position: 3365978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3366177:1
position: 3366177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f5ebd958-b7c9-4f12-b098-45e559deae83
SIO_000300: 1
SIO_000628: feature:3365978-3366177:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4728583..4728782
location: region:4728583-4728782:1
BFO_0000051: feature:4728583-4728782:1:region
SIO_000974: 6a3348b5-8303-4b5b-9cd9-d7b0ddcbfbd9

position:4728583:1
position: 4728583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4728782:1
position: 4728782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6a3348b5-8303-4b5b-9cd9-d7b0ddcbfbd9
SIO_000300: 1
SIO_000628: feature:4728583-4728782:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5025113..5025312
location: region:5025113-5025312:1
BFO_0000051: feature:5025113-5025312:1:region
SIO_000974: f738f466-bb15-4b3e-946b-7ea9409175be

position:5025113:1
position: 5025113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5025312:1
position: 5025312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5025113-5025312:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11141300..11141499
location: region:11141300-11141499:1
BFO_0000051: feature:11141300-11141499:1:region
SIO_000974: 02b87fe7-3b76-4ba3-a010-d6e0ac0a6095

position:11141300:1
position: 11141300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11141499:1
position: 11141499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02b87fe7-3b76-4ba3-a010-d6e0ac0a6095
SIO_000300: 1
SIO_000628: feature:11141300-11141499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12308401..12308600
location: region:12308401-12308600:1
BFO_0000051: feature:12308401-12308600:1:region
SIO_000974: d8b28eb5-62ed-4248-90d6-63f8e13e027f

position:12308401:1
position: 12308401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12308600:1
position: 12308600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12308401-12308600:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12370855..12371054
location: region:12370855-12371054:1
BFO_0000051: feature:12370855-12371054:1:region
SIO_000974: e3e3870d-f0ca-433a-bffd-4280631cb833

position:12370855:1
position: 12370855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12371054:1
position: 12371054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e3e3870d-f0ca-433a-bffd-4280631cb833
SIO_000300: 1
SIO_000628: feature:12370855-12371054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13668796..13668995
location: region:13668796-13668995:1
BFO_0000051: feature:13668796-13668995:1:region
SIO_000974: 7eebf6b9-eb23-4931-9c94-80adf8880d8c

position:13668796:1
position: 13668796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13668995:1
position: 13668995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7eebf6b9-eb23-4931-9c94-80adf8880d8c
SIO_000300: 1
SIO_000628: feature:13668796-13668995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13698589..13698788
location: region:13698589-13698788:1
BFO_0000051: feature:13698589-13698788:1:region
SIO_000974: 9865478c-c4c0-4b06-adbb-2029bf0723d6

position:13698589:1
position: 13698589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13698788:1
position: 13698788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9865478c-c4c0-4b06-adbb-2029bf0723d6
SIO_000300: 1
SIO_000628: feature:13698589-13698788:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 17
gap type: unknown
BFO_0000050: sequence
location: 13728761..13728777
location: region:13728761-13728777:1
BFO_0000051: feature:13728761-13728777:1:region
SIO_000974: 62a3e207-6647-4960-b24e-2d6b9df46980

position:13728761:1
position: 13728761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13728777:1
position: 13728777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

62a3e207-6647-4960-b24e-2d6b9df46980
SIO_000300: 1
SIO_000628: feature:13728761-13728777:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13729337..13729536
location: region:13729337-13729536:1
BFO_0000051: feature:13729337-13729536:1:region
SIO_000974: cc4b7973-3b31-4139-a9e3-b0d0ef63abaf

position:13729337:1
position: 13729337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13729536:1
position: 13729536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cc4b7973-3b31-4139-a9e3-b0d0ef63abaf
SIO_000300: 1
SIO_000628: feature:13729337-13729536:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13774081..13774280
location: region:13774081-13774280:1
BFO_0000051: feature:13774081-13774280:1:region
SIO_000974: 74d41a2a-dd3d-4ec5-ab9a-dd2258f67413

position:13774081:1
position: 13774081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13774280:1
position: 13774280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74d41a2a-dd3d-4ec5-ab9a-dd2258f67413
SIO_000300: 1
SIO_000628: feature:13774081-13774280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13806395..13806594
location: region:13806395-13806594:1
BFO_0000051: feature:13806395-13806594:1:region
SIO_000974: c0b8179e-518a-470d-9862-b439d09b7add

position:13806395:1
position: 13806395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13806594:1
position: 13806594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0b8179e-518a-470d-9862-b439d09b7add
SIO_000300: 1
SIO_000628: feature:13806395-13806594:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13838644..13838843
location: region:13838644-13838843:1
BFO_0000051: feature:13838644-13838843:1:region
SIO_000974: 11c69799-a675-4847-8f3a-255f4dbb5aa5

position:13838644:1
position: 13838644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13838843:1
position: 13838843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

11c69799-a675-4847-8f3a-255f4dbb5aa5
SIO_000300: 1
SIO_000628: feature:13838644-13838843:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13887567..13887766
location: region:13887567-13887766:1
BFO_0000051: feature:13887567-13887766:1:region
SIO_000974: 11bb944b-f6de-4ca9-8a1d-086b8a324c3c

position:13887567:1
position: 13887567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13887766:1
position: 13887766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

11bb944b-f6de-4ca9-8a1d-086b8a324c3c
SIO_000300: 1
SIO_000628: feature:13887567-13887766:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13985314..13985513
location: region:13985314-13985513:1
BFO_0000051: feature:13985314-13985513:1:region
SIO_000974: 372e4002-6739-4b99-857f-371c1d3f2bbe

position:13985314:1
position: 13985314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13985513:1
position: 13985513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

372e4002-6739-4b99-857f-371c1d3f2bbe
SIO_000300: 1
SIO_000628: feature:13985314-13985513:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14099429..14099628
location: region:14099429-14099628:1
BFO_0000051: feature:14099429-14099628:1:region
SIO_000974: 619080d6-9728-4487-ba0c-4bd01d06c6b4

position:14099429:1
position: 14099429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14099628:1
position: 14099628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

619080d6-9728-4487-ba0c-4bd01d06c6b4
SIO_000300: 1
SIO_000628: feature:14099429-14099628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17259748..17259947
location: region:17259748-17259947:1
BFO_0000051: feature:17259748-17259947:1:region
SIO_000974: f608cc25-f32e-412c-86ef-3cd1f55b9f93

position:17259748:1
position: 17259748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17259947:1
position: 17259947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f608cc25-f32e-412c-86ef-3cd1f55b9f93
SIO_000300: 1
SIO_000628: feature:17259748-17259947:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18744586..18744785
location: region:18744586-18744785:1
BFO_0000051: feature:18744586-18744785:1:region
SIO_000974: 921b8817-0c42-476f-a79d-98ee41a7fadb

position:18744586:1
position: 18744586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18744785:1
position: 18744785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

921b8817-0c42-476f-a79d-98ee41a7fadb
SIO_000300: 1
SIO_000628: feature:18744586-18744785:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18799753..18799952
location: region:18799753-18799952:1
BFO_0000051: feature:18799753-18799952:1:region
SIO_000974: 4aba6cd4-1943-4d69-9682-9bf850c7def9

position:18799753:1
position: 18799753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18799952:1
position: 18799952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4aba6cd4-1943-4d69-9682-9bf850c7def9
SIO_000300: 1
SIO_000628: feature:18799753-18799952:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20002392..20002591
location: region:20002392-20002591:1
BFO_0000051: feature:20002392-20002591:1:region
SIO_000974: 80f714d5-48f4-4f35-8975-7c9f29e63a76

position:20002392:1
position: 20002392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20002591:1
position: 20002591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80f714d5-48f4-4f35-8975-7c9f29e63a76
SIO_000300: 1
SIO_000628: feature:20002392-20002591:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27658592..27658791
location: region:27658592-27658791:1
BFO_0000051: feature:27658592-27658791:1:region
SIO_000974: ab1383d7-4fdb-4993-9480-cb260ff27e62

position:27658592:1
position: 27658592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27658791:1
position: 27658791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab1383d7-4fdb-4993-9480-cb260ff27e62
SIO_000300: 1
SIO_000628: feature:27658592-27658791:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37107470..37107669
location: region:37107470-37107669:1
BFO_0000051: feature:37107470-37107669:1:region
SIO_000974: 1651d05a-635c-4d99-92ce-0e7bde6121cc

position:37107470:1
position: 37107470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37107669:1
position: 37107669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1651d05a-635c-4d99-92ce-0e7bde6121cc
SIO_000300: 1
SIO_000628: feature:37107470-37107669:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37162864..37163063
location: region:37162864-37163063:1
BFO_0000051: feature:37162864-37163063:1:region
SIO_000974: e9cbf881-7f1e-4a31-bc2c-b7620c8ed0aa

position:37162864:1
position: 37162864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37163063:1
position: 37163063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9cbf881-7f1e-4a31-bc2c-b7620c8ed0aa
SIO_000300: 1
SIO_000628: feature:37162864-37163063:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38459065..38459264
location: region:38459065-38459264:1
BFO_0000051: feature:38459065-38459264:1:region
SIO_000974: cb44710a-564e-4e7b-88dc-d01baf5667ce

position:38459065:1
position: 38459065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38459264:1
position: 38459264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb44710a-564e-4e7b-88dc-d01baf5667ce
SIO_000300: 1
SIO_000628: feature:38459065-38459264:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43010187..43010386
location: region:43010187-43010386:1
BFO_0000051: feature:43010187-43010386:1:region
SIO_000974: 8e9596c5-d51d-4534-93ba-e78cd3fa5a8b

position:43010187:1
position: 43010187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43010386:1
position: 43010386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e9596c5-d51d-4534-93ba-e78cd3fa5a8b
SIO_000300: 1
SIO_000628: feature:43010187-43010386:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44162387..44162586
location: region:44162387-44162586:1
BFO_0000051: feature:44162387-44162586:1:region
SIO_000974: 34b7f27a-5f55-4cc8-a243-af3783af9d88

position:44162387:1
position: 44162387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44162586:1
position: 44162586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34b7f27a-5f55-4cc8-a243-af3783af9d88
SIO_000300: 1
SIO_000628: feature:44162387-44162586:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44263427..44263626
location: region:44263427-44263626:1
BFO_0000051: feature:44263427-44263626:1:region
SIO_000974: 40753ee8-0b28-4a69-a6d6-7f3e53d7ebd2

position:44263427:1
position: 44263427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44263626:1
position: 44263626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40753ee8-0b28-4a69-a6d6-7f3e53d7ebd2
SIO_000300: 1
SIO_000628: feature:44263427-44263626:1:region

Lepidonotus clava genome assembly, chromosome: 16.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 16.
sequence version: OW387148.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 45382685
topology: linear
RO_0000086: SO_0000987
location: 1..45382685
location: region:1-45382685:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45382685:1
position: 45382685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45382685:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32753..32952
location: region:32753-32952:1
BFO_0000051: feature:32753-32952:1:region
SIO_000974: d533ff12-28e7-4ee6-9a24-ae7ffb732c47

position:32753:1
position: 32753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32952:1
position: 32952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d533ff12-28e7-4ee6-9a24-ae7ffb732c47
SIO_000300: 1
SIO_000628: feature:32753-32952:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 67004..67203
location: region:67004-67203:1
BFO_0000051: feature:67004-67203:1:region
SIO_000974: ea92f087-8345-4253-9539-dd97f6f50f7e

position:67004:1
position: 67004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67203:1
position: 67203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ea92f087-8345-4253-9539-dd97f6f50f7e
SIO_000300: 1
SIO_000628: feature:67004-67203:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 104692..104891
location: region:104692-104891:1
BFO_0000051: feature:104692-104891:1:region
SIO_000974: 7a032355-1098-449e-a414-9e46cb3a7c46

position:104692:1
position: 104692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104891:1
position: 104891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a032355-1098-449e-a414-9e46cb3a7c46
SIO_000300: 1
SIO_000628: feature:104692-104891:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 117414..117613
location: region:117414-117613:1
BFO_0000051: feature:117414-117613:1:region
SIO_000974: 74deae1c-64f7-44a5-ad0e-29d342b49288

position:117414:1
position: 117414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117613:1
position: 117613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74deae1c-64f7-44a5-ad0e-29d342b49288
SIO_000300: 1
SIO_000628: feature:117414-117613:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 144191..144390
location: region:144191-144390:1
BFO_0000051: feature:144191-144390:1:region
SIO_000974: a0c9a3b6-c13b-4f41-a4ca-c9a7fec5bd23

position:144191:1
position: 144191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144390:1
position: 144390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0c9a3b6-c13b-4f41-a4ca-c9a7fec5bd23
SIO_000300: 1
SIO_000628: feature:144191-144390:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 225002..225201
location: region:225002-225201:1
BFO_0000051: feature:225002-225201:1:region
SIO_000974: 29ce5f10-c3a6-4c2c-9332-38e8ca316a6b

position:225002:1
position: 225002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225201:1
position: 225201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29ce5f10-c3a6-4c2c-9332-38e8ca316a6b
SIO_000300: 1
SIO_000628: feature:225002-225201:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 603557..603756
location: region:603557-603756:1
BFO_0000051: feature:603557-603756:1:region
SIO_000974: 2b85967b-1ffa-49b8-919d-733cf6f516ed

position:603557:1
position: 603557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:603756:1
position: 603756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b85967b-1ffa-49b8-919d-733cf6f516ed
SIO_000300: 1
SIO_000628: feature:603557-603756:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3957102..3957301
location: region:3957102-3957301:1
BFO_0000051: feature:3957102-3957301:1:region
SIO_000974: 0e2a65aa-3a3a-4202-b0c0-caabb0d9e076

position:3957102:1
position: 3957102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3957301:1
position: 3957301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e2a65aa-3a3a-4202-b0c0-caabb0d9e076
SIO_000300: 1
SIO_000628: feature:3957102-3957301:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3988637..3988836
location: region:3988637-3988836:1
BFO_0000051: feature:3988637-3988836:1:region
SIO_000974: 91f7a91f-0f6a-473c-8934-2b383120de8d

position:3988637:1
position: 3988637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3988836:1
position: 3988836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

91f7a91f-0f6a-473c-8934-2b383120de8d
SIO_000300: 1
SIO_000628: feature:3988637-3988836:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7776891..7777090
location: region:7776891-7777090:1
BFO_0000051: feature:7776891-7777090:1:region
SIO_000974: 687c3afc-2b17-407e-b291-ccfe985dda0e

position:7776891:1
position: 7776891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7777090:1
position: 7777090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

687c3afc-2b17-407e-b291-ccfe985dda0e
SIO_000300: 1
SIO_000628: feature:7776891-7777090:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9245983..9246182
location: region:9245983-9246182:1
BFO_0000051: feature:9245983-9246182:1:region
SIO_000974: f329a4dc-e474-483e-92fc-c9c2836cbd61

position:9245983:1
position: 9245983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9246182:1
position: 9246182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f329a4dc-e474-483e-92fc-c9c2836cbd61
SIO_000300: 1
SIO_000628: feature:9245983-9246182:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9355229..9355428
location: region:9355229-9355428:1
BFO_0000051: feature:9355229-9355428:1:region
SIO_000974: 4763bfb0-9db6-4f37-aaba-3fcd1f244908

position:9355229:1
position: 9355229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9355428:1
position: 9355428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4763bfb0-9db6-4f37-aaba-3fcd1f244908
SIO_000300: 1
SIO_000628: feature:9355229-9355428:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11897761..11897960
location: region:11897761-11897960:1
BFO_0000051: feature:11897761-11897960:1:region
SIO_000974: 726d42de-5690-4631-be9d-ff4e74155e62

position:11897761:1
position: 11897761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11897960:1
position: 11897960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

726d42de-5690-4631-be9d-ff4e74155e62
SIO_000300: 1
SIO_000628: feature:11897761-11897960:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14713965..14714164
location: region:14713965-14714164:1
BFO_0000051: feature:14713965-14714164:1:region
SIO_000974: 86746236-71b3-49af-83c4-e46b7d9a222f

position:14713965:1
position: 14713965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14714164:1
position: 14714164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86746236-71b3-49af-83c4-e46b7d9a222f
SIO_000300: 1
SIO_000628: feature:14713965-14714164:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16094165..16094364
location: region:16094165-16094364:1
BFO_0000051: feature:16094165-16094364:1:region
SIO_000974: ce9dfa48-ae59-464c-8785-380b8598c1de

position:16094165:1
position: 16094165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16094364:1
position: 16094364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ce9dfa48-ae59-464c-8785-380b8598c1de
SIO_000300: 1
SIO_000628: feature:16094165-16094364:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23199798..23199997
location: region:23199798-23199997:1
BFO_0000051: feature:23199798-23199997:1:region
SIO_000974: 5981a522-910f-4d6f-9941-20aba41cb7a5

position:23199798:1
position: 23199798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23199997:1
position: 23199997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5981a522-910f-4d6f-9941-20aba41cb7a5
SIO_000300: 1
SIO_000628: feature:23199798-23199997:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24506078..24506277
location: region:24506078-24506277:1
BFO_0000051: feature:24506078-24506277:1:region
SIO_000974: 2c3e42af-2b72-4474-bb4d-fd954dbd8aa9

position:24506078:1
position: 24506078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24506277:1
position: 24506277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c3e42af-2b72-4474-bb4d-fd954dbd8aa9
SIO_000300: 1
SIO_000628: feature:24506078-24506277:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25277314..25277513
location: region:25277314-25277513:1
BFO_0000051: feature:25277314-25277513:1:region
SIO_000974: d33cad55-8f5d-4346-82c8-aef94cd4fca3

position:25277314:1
position: 25277314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25277513:1
position: 25277513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d33cad55-8f5d-4346-82c8-aef94cd4fca3
SIO_000300: 1
SIO_000628: feature:25277314-25277513:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26431614..26431813
location: region:26431614-26431813:1
BFO_0000051: feature:26431614-26431813:1:region
SIO_000974: 9e00220a-f0d2-4258-9064-3970dd1b7191

position:26431614:1
position: 26431614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26431813:1
position: 26431813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9e00220a-f0d2-4258-9064-3970dd1b7191
SIO_000300: 1
SIO_000628: feature:26431614-26431813:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30964297..30964496
location: region:30964297-30964496:1
BFO_0000051: feature:30964297-30964496:1:region
SIO_000974: 4d709fea-843d-4b27-98f9-f36f3d4dc875

position:30964297:1
position: 30964297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30964496:1
position: 30964496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4d709fea-843d-4b27-98f9-f36f3d4dc875
SIO_000300: 1
SIO_000628: feature:30964297-30964496:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36181974..36182173
location: region:36181974-36182173:1
BFO_0000051: feature:36181974-36182173:1:region
SIO_000974: 17ee46fb-358a-4f48-9601-939451b873f1

position:36181974:1
position: 36181974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36182173:1
position: 36182173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17ee46fb-358a-4f48-9601-939451b873f1
SIO_000300: 1
SIO_000628: feature:36181974-36182173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36221051..36221250
location: region:36221051-36221250:1
BFO_0000051: feature:36221051-36221250:1:region
SIO_000974: d1e24038-a03a-4ffd-a6b2-6543db8e60e3

position:36221051:1
position: 36221051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36221250:1
position: 36221250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1e24038-a03a-4ffd-a6b2-6543db8e60e3
SIO_000300: 1
SIO_000628: feature:36221051-36221250:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36260163..36260362
location: region:36260163-36260362:1
BFO_0000051: feature:36260163-36260362:1:region
SIO_000974: 55074523-b3af-4cc4-b5a6-5cd700c74176

position:36260163:1
position: 36260163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36260362:1
position: 36260362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55074523-b3af-4cc4-b5a6-5cd700c74176
SIO_000300: 1
SIO_000628: feature:36260163-36260362:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36319745..36319944
location: region:36319745-36319944:1
BFO_0000051: feature:36319745-36319944:1:region
SIO_000974: f7124014-a25a-440d-949c-23415a44f80d

position:36319745:1
position: 36319745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36319944:1
position: 36319944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f7124014-a25a-440d-949c-23415a44f80d
SIO_000300: 1
SIO_000628: feature:36319745-36319944:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36490803..36491002
location: region:36490803-36491002:1
BFO_0000051: feature:36490803-36491002:1:region
SIO_000974: d50f56a3-8310-4098-b51f-21cca878cf45

position:36490803:1
position: 36490803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36491002:1
position: 36491002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d50f56a3-8310-4098-b51f-21cca878cf45
SIO_000300: 1
SIO_000628: feature:36490803-36491002:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43469969..43470168
location: region:43469969-43470168:1
BFO_0000051: feature:43469969-43470168:1:region
SIO_000974: dde2ab32-f865-4545-b15a-f5971aed4949

position:43469969:1
position: 43469969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43470168:1
position: 43470168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dde2ab32-f865-4545-b15a-f5971aed4949
SIO_000300: 1
SIO_000628: feature:43469969-43470168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43506628..43506827
location: region:43506628-43506827:1
BFO_0000051: feature:43506628-43506827:1:region
SIO_000974: 3d82e23b-786b-4141-a6ee-d8a3d1f44fd9

position:43506628:1
position: 43506628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43506827:1
position: 43506827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d82e23b-786b-4141-a6ee-d8a3d1f44fd9
SIO_000300: 1
SIO_000628: feature:43506628-43506827:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43625498..43625697
location: region:43625498-43625697:1
BFO_0000051: feature:43625498-43625697:1:region
SIO_000974: 02f8a77c-d564-4e37-b672-c28ae891e4d6

position:43625498:1
position: 43625498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43625697:1
position: 43625697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02f8a77c-d564-4e37-b672-c28ae891e4d6
SIO_000300: 1
SIO_000628: feature:43625498-43625697:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45182826..45183025
location: region:45182826-45183025:1
BFO_0000051: feature:45182826-45183025:1:region
SIO_000974: bc7b4184-98c8-4435-a10b-00d9a9179ff2

position:45182826:1
position: 45182826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45183025:1
position: 45183025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc7b4184-98c8-4435-a10b-00d9a9179ff2
SIO_000300: 1
SIO_000628: feature:45182826-45183025:1:region

Lepidonotus clava genome assembly, chromosome: 17.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 17.
sequence version: OW387149.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 43840983
topology: linear
RO_0000086: SO_0000987
location: 1..43840983
location: region:1-43840983:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43840983:1
position: 43840983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-43840983:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1845914..1846113
location: region:1845914-1846113:1
BFO_0000051: feature:1845914-1846113:1:region
SIO_000974: 3d5c0cf5-17f7-4c64-a31e-b700c52c4678

position:1845914:1
position: 1845914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1846113:1
position: 1846113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d5c0cf5-17f7-4c64-a31e-b700c52c4678
SIO_000300: 1
SIO_000628: feature:1845914-1846113:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4631986..4632185
location: region:4631986-4632185:1
BFO_0000051: feature:4631986-4632185:1:region
SIO_000974: 821d73b3-89cb-4cad-b19c-e6f9698d8b1c

position:4631986:1
position: 4631986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4632185:1
position: 4632185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

821d73b3-89cb-4cad-b19c-e6f9698d8b1c
SIO_000300: 1
SIO_000628: feature:4631986-4632185:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6186852..6187051
location: region:6186852-6187051:1
BFO_0000051: feature:6186852-6187051:1:region
SIO_000974: 29f70915-2af1-4d4d-8fd4-44fced6a9d6b

position:6186852:1
position: 6186852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6187051:1
position: 6187051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29f70915-2af1-4d4d-8fd4-44fced6a9d6b
SIO_000300: 1
SIO_000628: feature:6186852-6187051:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6219995..6220194
location: region:6219995-6220194:1
BFO_0000051: feature:6219995-6220194:1:region
SIO_000974: 32417a41-6e84-49d1-a881-6747c9d5225f

position:6219995:1
position: 6219995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6220194:1
position: 6220194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32417a41-6e84-49d1-a881-6747c9d5225f
SIO_000300: 1
SIO_000628: feature:6219995-6220194:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6251198..6251397
location: region:6251198-6251397:1
BFO_0000051: feature:6251198-6251397:1:region
SIO_000974: 06da6ce5-563a-4f10-a08b-60aaffc3314f

position:6251198:1
position: 6251198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6251397:1
position: 6251397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06da6ce5-563a-4f10-a08b-60aaffc3314f
SIO_000300: 1
SIO_000628: feature:6251198-6251397:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6307025..6307224
location: region:6307025-6307224:1
BFO_0000051: feature:6307025-6307224:1:region
SIO_000974: e90d7316-dc2b-41b2-8ae6-dba84348350a

position:6307025:1
position: 6307025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6307224:1
position: 6307224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e90d7316-dc2b-41b2-8ae6-dba84348350a
SIO_000300: 1
SIO_000628: feature:6307025-6307224:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14189048..14189247
location: region:14189048-14189247:1
BFO_0000051: feature:14189048-14189247:1:region
SIO_000974: e14e7bf5-77c0-4d1b-a21e-cf4f49662513

position:14189048:1
position: 14189048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14189247:1
position: 14189247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e14e7bf5-77c0-4d1b-a21e-cf4f49662513
SIO_000300: 1
SIO_000628: feature:14189048-14189247:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16050195..16050394
location: region:16050195-16050394:1
BFO_0000051: feature:16050195-16050394:1:region
SIO_000974: 7061826a-471f-47eb-926e-5db14de05864

position:16050195:1
position: 16050195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16050394:1
position: 16050394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7061826a-471f-47eb-926e-5db14de05864
SIO_000300: 1
SIO_000628: feature:16050195-16050394:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17246378..17246577
location: region:17246378-17246577:1
BFO_0000051: feature:17246378-17246577:1:region
SIO_000974: 223229ff-3461-4c77-b849-fb94e0897f54

position:17246378:1
position: 17246378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17246577:1
position: 17246577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

223229ff-3461-4c77-b849-fb94e0897f54
SIO_000300: 1
SIO_000628: feature:17246378-17246577:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17760258..17760457
location: region:17760258-17760457:1
BFO_0000051: feature:17760258-17760457:1:region
SIO_000974: 5e658dc7-49aa-4f71-914e-c3b96b5c0841

position:17760258:1
position: 17760258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17760457:1
position: 17760457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e658dc7-49aa-4f71-914e-c3b96b5c0841
SIO_000300: 1
SIO_000628: feature:17760258-17760457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19534363..19534562
location: region:19534363-19534562:1
BFO_0000051: feature:19534363-19534562:1:region
SIO_000974: ad609e92-021f-4a9e-a378-d7e429e5c587

position:19534363:1
position: 19534363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19534562:1
position: 19534562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad609e92-021f-4a9e-a378-d7e429e5c587
SIO_000300: 1
SIO_000628: feature:19534363-19534562:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22569592..22569791
location: region:22569592-22569791:1
BFO_0000051: feature:22569592-22569791:1:region
SIO_000974: 8c86114f-2bb5-403f-b705-388191fb4713

position:22569592:1
position: 22569592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22569791:1
position: 22569791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c86114f-2bb5-403f-b705-388191fb4713
SIO_000300: 1
SIO_000628: feature:22569592-22569791:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23256266..23256465
location: region:23256266-23256465:1
BFO_0000051: feature:23256266-23256465:1:region
SIO_000974: 36d14396-8cd9-448e-9270-2cff7af9b7e7

position:23256266:1
position: 23256266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23256465:1
position: 23256465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36d14396-8cd9-448e-9270-2cff7af9b7e7
SIO_000300: 1
SIO_000628: feature:23256266-23256465:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23288806..23289005
location: region:23288806-23289005:1
BFO_0000051: feature:23288806-23289005:1:region
SIO_000974: c351004e-4004-427b-83ae-a2483da3f3c9

position:23288806:1
position: 23288806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23289005:1
position: 23289005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c351004e-4004-427b-83ae-a2483da3f3c9
SIO_000300: 1
SIO_000628: feature:23288806-23289005:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25525617..25525816
location: region:25525617-25525816:1
BFO_0000051: feature:25525617-25525816:1:region
SIO_000974: 009e6ef9-c8fb-4081-9ada-a8cc6f2e51ad

position:25525617:1
position: 25525617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25525816:1
position: 25525816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

009e6ef9-c8fb-4081-9ada-a8cc6f2e51ad
SIO_000300: 1
SIO_000628: feature:25525617-25525816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25563313..25563512
location: region:25563313-25563512:1
BFO_0000051: feature:25563313-25563512:1:region
SIO_000974: 31524ec8-4c1f-4a78-81ab-a93fc2727fe2

position:25563313:1
position: 25563313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25563512:1
position: 25563512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31524ec8-4c1f-4a78-81ab-a93fc2727fe2
SIO_000300: 1
SIO_000628: feature:25563313-25563512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25601346..25601545
location: region:25601346-25601545:1
BFO_0000051: feature:25601346-25601545:1:region
SIO_000974: 696e61c5-0dae-46ed-99dc-46f8190b1ba1

position:25601346:1
position: 25601346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25601545:1
position: 25601545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

696e61c5-0dae-46ed-99dc-46f8190b1ba1
SIO_000300: 1
SIO_000628: feature:25601346-25601545:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25657893..25658092
location: region:25657893-25658092:1
BFO_0000051: feature:25657893-25658092:1:region
SIO_000974: caf6233d-a477-4332-acf8-e108d900f2a8

position:25657893:1
position: 25657893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25658092:1
position: 25658092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

caf6233d-a477-4332-acf8-e108d900f2a8
SIO_000300: 1
SIO_000628: feature:25657893-25658092:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25806951..25807150
location: region:25806951-25807150:1
BFO_0000051: feature:25806951-25807150:1:region
SIO_000974: 5def5e00-eb2b-479e-a5e4-1aa66e0b600d

position:25806951:1
position: 25806951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25807150:1
position: 25807150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5def5e00-eb2b-479e-a5e4-1aa66e0b600d
SIO_000300: 1
SIO_000628: feature:25806951-25807150:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26256766..26256965
location: region:26256766-26256965:1
BFO_0000051: feature:26256766-26256965:1:region
SIO_000974: ae360734-97a4-4eb0-b52f-9942822c2281

position:26256766:1
position: 26256766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26256965:1
position: 26256965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae360734-97a4-4eb0-b52f-9942822c2281
SIO_000300: 1
SIO_000628: feature:26256766-26256965:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31745959..31746158
location: region:31745959-31746158:1
BFO_0000051: feature:31745959-31746158:1:region
SIO_000974: 29ef842a-2b68-4d9e-b37f-ff21d6f4ab1b

position:31745959:1
position: 31745959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31746158:1
position: 31746158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29ef842a-2b68-4d9e-b37f-ff21d6f4ab1b
SIO_000300: 1
SIO_000628: feature:31745959-31746158:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41202336..41202535
location: region:41202336-41202535:1
BFO_0000051: feature:41202336-41202535:1:region
SIO_000974: 94b83236-34d9-412b-8c85-ca3465eb830e

position:41202336:1
position: 41202336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41202535:1
position: 41202535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94b83236-34d9-412b-8c85-ca3465eb830e
SIO_000300: 1
SIO_000628: feature:41202336-41202535:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41230433..41230632
location: region:41230433-41230632:1
BFO_0000051: feature:41230433-41230632:1:region
SIO_000974: b2d6ad16-204a-4a67-bf83-3bb393e3b737

position:41230433:1
position: 41230433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41230632:1
position: 41230632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b2d6ad16-204a-4a67-bf83-3bb393e3b737
SIO_000300: 1
SIO_000628: feature:41230433-41230632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41258008..41258207
location: region:41258008-41258207:1
BFO_0000051: feature:41258008-41258207:1:region
SIO_000974: 61564e94-6e11-446a-b23d-e930a25a0d4e

position:41258008:1
position: 41258008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41258207:1
position: 41258207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

61564e94-6e11-446a-b23d-e930a25a0d4e
SIO_000300: 1
SIO_000628: feature:41258008-41258207:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41285520..41285719
location: region:41285520-41285719:1
BFO_0000051: feature:41285520-41285719:1:region
SIO_000974: a1eb443a-433b-480c-9f4a-a3db434bc8b2

position:41285520:1
position: 41285520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41285719:1
position: 41285719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a1eb443a-433b-480c-9f4a-a3db434bc8b2
SIO_000300: 1
SIO_000628: feature:41285520-41285719:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41312465..41312664
location: region:41312465-41312664:1
BFO_0000051: feature:41312465-41312664:1:region
SIO_000974: d59420a2-bd30-419b-b162-c576fde92669

position:41312465:1
position: 41312465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41312664:1
position: 41312664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d59420a2-bd30-419b-b162-c576fde92669
SIO_000300: 1
SIO_000628: feature:41312465-41312664:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41339481..41339680
location: region:41339481-41339680:1
BFO_0000051: feature:41339481-41339680:1:region
SIO_000974: e848a87e-4407-4034-bdb9-6f1c470d3dac

position:41339481:1
position: 41339481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41339680:1
position: 41339680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e848a87e-4407-4034-bdb9-6f1c470d3dac
SIO_000300: 1
SIO_000628: feature:41339481-41339680:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41509578..41509777
location: region:41509578-41509777:1
BFO_0000051: feature:41509578-41509777:1:region
SIO_000974: b7268c41-6a79-4adf-8747-413f2ec98783

position:41509578:1
position: 41509578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41509777:1
position: 41509777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7268c41-6a79-4adf-8747-413f2ec98783
SIO_000300: 1
SIO_000628: feature:41509578-41509777:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43750610..43750809
location: region:43750610-43750809:1
BFO_0000051: feature:43750610-43750809:1:region
SIO_000974: 80fa6570-0973-425b-8e08-09386ed4bc1c

position:43750610:1
position: 43750610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43750809:1
position: 43750809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80fa6570-0973-425b-8e08-09386ed4bc1c
SIO_000300: 1
SIO_000628: feature:43750610-43750809:1:region

Lepidonotus clava genome assembly, chromosome: 18.
type: Entry
definition: Lepidonotus clava genome assembly, chromosome: 18.
sequence version: OW387150.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 39411759
topology: linear
RO_0000086: SO_0000987
location: 1..39411759
location: region:1-39411759:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39411759:1
position: 39411759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39411759:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37847..38046
location: region:37847-38046:1
BFO_0000051: feature:37847-38046:1:region
SIO_000974: 1f73c1b8-d1df-4b20-ae04-0b7deb695cdc

position:37847:1
position: 37847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38046:1
position: 38046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f73c1b8-d1df-4b20-ae04-0b7deb695cdc
SIO_000300: 1
SIO_000628: feature:37847-38046:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 100405..100604
location: region:100405-100604:1
BFO_0000051: feature:100405-100604:1:region
SIO_000974: 2d4a473d-85ab-4910-b48e-d2c1960e9bbb

position:100405:1
position: 100405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100604:1
position: 100604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d4a473d-85ab-4910-b48e-d2c1960e9bbb
SIO_000300: 1
SIO_000628: feature:100405-100604:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 120594..120793
location: region:120594-120793:1
BFO_0000051: feature:120594-120793:1:region
SIO_000974: 3c2135cd-7f79-4760-8893-72887cbfa84a

position:120594:1
position: 120594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120793:1
position: 120793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c2135cd-7f79-4760-8893-72887cbfa84a
SIO_000300: 1
SIO_000628: feature:120594-120793:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 141284..141483
location: region:141284-141483:1
BFO_0000051: feature:141284-141483:1:region
SIO_000974: 02d751e0-5d24-4601-bab6-55166ff21267

position:141284:1
position: 141284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141483:1
position: 141483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02d751e0-5d24-4601-bab6-55166ff21267
SIO_000300: 1
SIO_000628: feature:141284-141483:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 211068..211267
location: region:211068-211267:1
BFO_0000051: feature:211068-211267:1:region
SIO_000974: a06e0176-af88-4d2e-8940-b0a2a34bda5c

position:211068:1
position: 211068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211267:1
position: 211267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a06e0176-af88-4d2e-8940-b0a2a34bda5c
SIO_000300: 1
SIO_000628: feature:211068-211267:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 250379..250578
location: region:250379-250578:1
BFO_0000051: feature:250379-250578:1:region
SIO_000974: 2841e49d-622e-43bc-bc13-5784f6c4f207

position:250379:1
position: 250379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250578:1
position: 250578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2841e49d-622e-43bc-bc13-5784f6c4f207
SIO_000300: 1
SIO_000628: feature:250379-250578:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 300214..300413
location: region:300214-300413:1
BFO_0000051: feature:300214-300413:1:region
SIO_000974: 34100235-c046-410f-9c8c-fa72ae03174b

position:300214:1
position: 300214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300413:1
position: 300413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34100235-c046-410f-9c8c-fa72ae03174b
SIO_000300: 1
SIO_000628: feature:300214-300413:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 339770..339969
location: region:339770-339969:1
BFO_0000051: feature:339770-339969:1:region
SIO_000974: e6f33110-81a0-45a7-b8e6-245d388da44c

position:339770:1
position: 339770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339969:1
position: 339969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6f33110-81a0-45a7-b8e6-245d388da44c
SIO_000300: 1
SIO_000628: feature:339770-339969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 442358..442557
location: region:442358-442557:1
BFO_0000051: feature:442358-442557:1:region
SIO_000974: 6c8457b2-f46a-4f7f-b5ca-63c3bf49d419

position:442358:1
position: 442358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442557:1
position: 442557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c8457b2-f46a-4f7f-b5ca-63c3bf49d419
SIO_000300: 1
SIO_000628: feature:442358-442557:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 470277..470476
location: region:470277-470476:1
BFO_0000051: feature:470277-470476:1:region
SIO_000974: b15d47af-2465-4751-8157-5ed130dec21a

position:470277:1
position: 470277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470476:1
position: 470476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b15d47af-2465-4751-8157-5ed130dec21a
SIO_000300: 1
SIO_000628: feature:470277-470476:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9742952..9743151
location: region:9742952-9743151:1
BFO_0000051: feature:9742952-9743151:1:region
SIO_000974: 4ab78093-1f67-4496-9b3e-8f81894a7ea4

position:9742952:1
position: 9742952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9743151:1
position: 9743151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4ab78093-1f67-4496-9b3e-8f81894a7ea4
SIO_000300: 1
SIO_000628: feature:9742952-9743151:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24570326..24570525
location: region:24570326-24570525:1
BFO_0000051: feature:24570326-24570525:1:region
SIO_000974: eef83f01-33f9-4f7b-a86b-e2f20f2855e9

position:24570326:1
position: 24570326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24570525:1
position: 24570525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eef83f01-33f9-4f7b-a86b-e2f20f2855e9
SIO_000300: 1
SIO_000628: feature:24570326-24570525:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28451218..28451417
location: region:28451218-28451417:1
BFO_0000051: feature:28451218-28451417:1:region
SIO_000974: c9f4a1be-2139-41fb-902f-fe0326c0cbd5

position:28451218:1
position: 28451218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28451417:1
position: 28451417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9f4a1be-2139-41fb-902f-fe0326c0cbd5
SIO_000300: 1
SIO_000628: feature:28451218-28451417:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28562240..28562439
location: region:28562240-28562439:1
BFO_0000051: feature:28562240-28562439:1:region
SIO_000974: 4c2d2212-09a9-4a48-81c4-a7244c7511f2

position:28562240:1
position: 28562240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28562439:1
position: 28562439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c2d2212-09a9-4a48-81c4-a7244c7511f2
SIO_000300: 1
SIO_000628: feature:28562240-28562439:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1210411
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29621595..29621794
location: region:29621595-29621794:1
BFO_0000051: feature:29621595-29621794:1:region
SIO_000974: c2e568aa-646b-4953-b1ad-58f8e4ba9c54

position:29621595:1
position: 29621595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29621794:1
position: 29621794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2e568aa-646b-4953-b1ad-58f8e4ba9c54
SIO_000300: 1
SIO_000628: feature:29621595-29621794:1:region

Lepidonotus clava genome assembly, organelle: mitochondrion.
type: Entry
definition: Lepidonotus clava genome assembly, organelle: mitochondrion.
sequence version: OW387151.1
sequence date: 2022-04-11
sequence: sequence
division: INV
source: mitochondrion Lepidonotus clava
organism: Lepidonotus clava
taxonomy: Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Annelida; Polychaeta; Errantia; Phyllodocida; Polynoidae; Lepidonotus.
reference: 1
comment: The assembly wpLepClav1.1 is based on 48x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with YaHS. The\nmitochondrial\ngenome was assembled using MitoHiFi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size. Repetitive scaffolds\ninserted\ninto chromosome 15 (~13.7Mb), order and orientation of these\nscaffolds is\nunclear.

sequence
subclass of: SO_0000001
sequence length: 15577
topology: linear
RO_0000086: SO_0000987
location: 1..15577
location: region:1-15577:1
RO_0002162: 1210411

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15577:1
position: 15577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15577:1:source
BFO_0000050: sequence
organism: Lepidonotus clava
organelle: mitochondrion
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: Z.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: Z.
sequence version: OW387776.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17284882
topology: linear
RO_0000086: SO_0000987
location: 1..17284882
location: region:1-17284882:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17284882:1
position: 17284882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17284882:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: Z
mol type: genomic DNA

1108569
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5407341..5407540
location: region:5407341-5407540:1
BFO_0000051: feature:5407341-5407540:1:region
SIO_000974: 4042b19a-4dea-4460-b8a6-358ea8ea82af

position:5407341:1
position: 5407341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5407540:1
position: 5407540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4042b19a-4dea-4460-b8a6-358ea8ea82af
SIO_000300: 1
SIO_000628: feature:5407341-5407540:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13559543..13559742
location: region:13559543-13559742:1
BFO_0000051: feature:13559543-13559742:1:region
SIO_000974: 6ebb999d-fbb6-4c0b-8753-8191b5f04aad

position:13559543:1
position: 13559543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13559742:1
position: 13559742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6ebb999d-fbb6-4c0b-8753-8191b5f04aad
SIO_000300: 1
SIO_000628: feature:13559543-13559742:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14631013..14631212
location: region:14631013-14631212:1
BFO_0000051: feature:14631013-14631212:1:region
SIO_000974: deef7789-f7e5-4f4b-8eec-1ad55dbe7280

position:14631013:1
position: 14631013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14631212:1
position: 14631212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

deef7789-f7e5-4f4b-8eec-1ad55dbe7280
SIO_000300: 1
SIO_000628: feature:14631013-14631212:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14741433..14741632
location: region:14741433-14741632:1
BFO_0000051: feature:14741433-14741632:1:region
SIO_000974: 3c6b7b40-fa4c-49ab-8365-dcf90348fbf7

position:14741433:1
position: 14741433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14741632:1
position: 14741632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c6b7b40-fa4c-49ab-8365-dcf90348fbf7
SIO_000300: 1
SIO_000628: feature:14741433-14741632:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 1.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 1.
sequence version: OW387777.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15865797
topology: linear
RO_0000086: SO_0000987
location: 1..15865797
location: region:1-15865797:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15865797:1
position: 15865797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15865797:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12675049..12675248
location: region:12675049-12675248:1
BFO_0000051: feature:12675049-12675248:1:region
SIO_000974: e9249b98-7c9f-4a27-890b-68d6c091af40

position:12675049:1
position: 12675049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12675248:1
position: 12675248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9249b98-7c9f-4a27-890b-68d6c091af40
SIO_000300: 1
SIO_000628: feature:12675049-12675248:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 2.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 2.
sequence version: OW387778.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15547541
topology: linear
RO_0000086: SO_0000987
location: 1..15547541
location: region:1-15547541:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15547541:1
position: 15547541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15547541:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 2
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 3.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 3.
sequence version: OW387779.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14714630
topology: linear
RO_0000086: SO_0000987
location: 1..14714630
location: region:1-14714630:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14714630:1
position: 14714630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14714630:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 3
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 4.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 4.
sequence version: OW387780.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14659999
topology: linear
RO_0000086: SO_0000987
location: 1..14659999
location: region:1-14659999:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14659999:1
position: 14659999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14659999:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 4
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 5.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 5.
sequence version: OW387781.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14559695
topology: linear
RO_0000086: SO_0000987
location: 1..14559695
location: region:1-14559695:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14559695:1
position: 14559695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14559695:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 5
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 6.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 6.
sequence version: OW387782.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13855819
topology: linear
RO_0000086: SO_0000987
location: 1..13855819
location: region:1-13855819:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13855819:1
position: 13855819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13855819:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 6
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 7.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 7.
sequence version: OW387783.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13505424
topology: linear
RO_0000086: SO_0000987
location: 1..13505424
location: region:1-13505424:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13505424:1
position: 13505424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13505424:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 7
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 8.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 8.
sequence version: OW387784.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13480289
topology: linear
RO_0000086: SO_0000987
location: 1..13480289
location: region:1-13480289:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13480289:1
position: 13480289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13480289:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5960001..5960200
location: region:5960001-5960200:1
BFO_0000051: feature:5960001-5960200:1:region
SIO_000974: 7ced3232-0979-4cb5-9cbb-207c9dcc7973

position:5960001:1
position: 5960001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5960200:1
position: 5960200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ced3232-0979-4cb5-9cbb-207c9dcc7973
SIO_000300: 1
SIO_000628: feature:5960001-5960200:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 9.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 9.
sequence version: OW387785.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13104625
topology: linear
RO_0000086: SO_0000987
location: 1..13104625
location: region:1-13104625:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13104625:1
position: 13104625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13104625:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11337417..11337616
location: region:11337417-11337616:1
BFO_0000051: feature:11337417-11337616:1:region
SIO_000974: 1f1953bd-9093-4273-8cc3-fa4bc5bfc4ae

position:11337417:1
position: 11337417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11337616:1
position: 11337616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f1953bd-9093-4273-8cc3-fa4bc5bfc4ae
SIO_000300: 1
SIO_000628: feature:11337417-11337616:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 10.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 10.
sequence version: OW387786.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12938525
topology: linear
RO_0000086: SO_0000987
location: 1..12938525
location: region:1-12938525:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12938525:1
position: 12938525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12938525:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 10
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 11.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 11.
sequence version: OW387787.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12752707
topology: linear
RO_0000086: SO_0000987
location: 1..12752707
location: region:1-12752707:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12752707:1
position: 12752707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12752707:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 334039..334238
location: region:334039-334238:1
BFO_0000051: feature:334039-334238:1:region
SIO_000974: 18ff2f3a-f9cd-4e3e-80ee-5f81b60ee721

position:334039:1
position: 334039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334238:1
position: 334238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18ff2f3a-f9cd-4e3e-80ee-5f81b60ee721
SIO_000300: 1
SIO_000628: feature:334039-334238:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10288703..10288902
location: region:10288703-10288902:1
BFO_0000051: feature:10288703-10288902:1:region
SIO_000974: 37d9027d-050a-4715-ad0a-945551777100

position:10288703:1
position: 10288703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10288902:1
position: 10288902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37d9027d-050a-4715-ad0a-945551777100
SIO_000300: 1
SIO_000628: feature:10288703-10288902:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 12.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 12.
sequence version: OW387788.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12440847
topology: linear
RO_0000086: SO_0000987
location: 1..12440847
location: region:1-12440847:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12440847:1
position: 12440847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12440847:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8192706..8192905
location: region:8192706-8192905:1
BFO_0000051: feature:8192706-8192905:1:region
SIO_000974: 22931165-0731-42f2-8124-14cf6dc6473c

position:8192706:1
position: 8192706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8192905:1
position: 8192905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22931165-0731-42f2-8124-14cf6dc6473c
SIO_000300: 1
SIO_000628: feature:8192706-8192905:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 13.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 13.
sequence version: OW387789.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12372849
topology: linear
RO_0000086: SO_0000987
location: 1..12372849
location: region:1-12372849:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12372849:1
position: 12372849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12372849:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12079650..12079849
location: region:12079650-12079849:1
BFO_0000051: feature:12079650-12079849:1:region
SIO_000974: ef46e6b5-673e-4e2f-8ce8-4accb81a71a8

position:12079650:1
position: 12079650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12079849:1
position: 12079849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ef46e6b5-673e-4e2f-8ce8-4accb81a71a8
SIO_000300: 1
SIO_000628: feature:12079650-12079849:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 14.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 14.
sequence version: OW387790.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12318000
topology: linear
RO_0000086: SO_0000987
location: 1..12318000
location: region:1-12318000:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12318000:1
position: 12318000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12318000:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 14
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 15.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 15.
sequence version: OW387791.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12128890
topology: linear
RO_0000086: SO_0000987
location: 1..12128890
location: region:1-12128890:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12128890:1
position: 12128890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12128890:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2831881..2832080
location: region:2831881-2832080:1
BFO_0000051: feature:2831881-2832080:1:region
SIO_000974: 3965fcf7-12bd-4baa-bbd2-e00d88ffb9f8

position:2831881:1
position: 2831881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2832080:1
position: 2832080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3965fcf7-12bd-4baa-bbd2-e00d88ffb9f8
SIO_000300: 1
SIO_000628: feature:2831881-2832080:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 16.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 16.
sequence version: OW387792.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11765226
topology: linear
RO_0000086: SO_0000987
location: 1..11765226
location: region:1-11765226:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11765226:1
position: 11765226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11765226:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3975470..3975669
location: region:3975470-3975669:1
BFO_0000051: feature:3975470-3975669:1:region
SIO_000974: 73cb6e32-1dca-458d-b76b-4f93e4124f1b

position:3975470:1
position: 3975470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3975669:1
position: 3975669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73cb6e32-1dca-458d-b76b-4f93e4124f1b
SIO_000300: 1
SIO_000628: feature:3975470-3975669:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6219157..6219356
location: region:6219157-6219356:1
BFO_0000051: feature:6219157-6219356:1:region
SIO_000974: 0b2bf0f6-38ba-4a44-9789-fdcc0411039f

position:6219157:1
position: 6219157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6219356:1
position: 6219356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0b2bf0f6-38ba-4a44-9789-fdcc0411039f
SIO_000300: 1
SIO_000628: feature:6219157-6219356:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 17.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 17.
sequence version: OW387793.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11339429
topology: linear
RO_0000086: SO_0000987
location: 1..11339429
location: region:1-11339429:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11339429:1
position: 11339429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11339429:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 17
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 18.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 18.
sequence version: OW387794.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11332549
topology: linear
RO_0000086: SO_0000987
location: 1..11332549
location: region:1-11332549:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11332549:1
position: 11332549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11332549:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 18
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 19.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 19.
sequence version: OW387795.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10560084
topology: linear
RO_0000086: SO_0000987
location: 1..10560084
location: region:1-10560084:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10560084:1
position: 10560084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10560084:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 19
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 20.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 20.
sequence version: OW387796.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9644414
topology: linear
RO_0000086: SO_0000987
location: 1..9644414
location: region:1-9644414:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9644414:1
position: 9644414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9644414:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 20
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 21.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 21.
sequence version: OW387797.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9494559
topology: linear
RO_0000086: SO_0000987
location: 1..9494559
location: region:1-9494559:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9494559:1
position: 9494559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9494559:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 21
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 22.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 22.
sequence version: OW387798.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8693055
topology: linear
RO_0000086: SO_0000987
location: 1..8693055
location: region:1-8693055:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8693055:1
position: 8693055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8693055:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 22
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 23.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 23.
sequence version: OW387799.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8276586
topology: linear
RO_0000086: SO_0000987
location: 1..8276586
location: region:1-8276586:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8276586:1
position: 8276586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8276586:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5636328..5636527
location: region:5636328-5636527:1
BFO_0000051: feature:5636328-5636527:1:region
SIO_000974: 873f8319-4731-4198-b9a9-8a383fa9c463

position:5636328:1
position: 5636328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5636527:1
position: 5636527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

873f8319-4731-4198-b9a9-8a383fa9c463
SIO_000300: 1
SIO_000628: feature:5636328-5636527:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 24.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 24.
sequence version: OW387800.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8183210
topology: linear
RO_0000086: SO_0000987
location: 1..8183210
location: region:1-8183210:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8183210:1
position: 8183210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8183210:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 24
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 25.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 25.
sequence version: OW387801.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8142002
topology: linear
RO_0000086: SO_0000987
location: 1..8142002
location: region:1-8142002:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8142002:1
position: 8142002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8142002:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 25
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 26.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 26.
sequence version: OW387802.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 7044644
topology: linear
RO_0000086: SO_0000987
location: 1..7044644
location: region:1-7044644:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7044644:1
position: 7044644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7044644:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 62272..62471
location: region:62272-62471:1
BFO_0000051: feature:62272-62471:1:region
SIO_000974: ff6325e1-7799-43ab-9279-a28352478e21

position:62272:1
position: 62272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62471:1
position: 62471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff6325e1-7799-43ab-9279-a28352478e21
SIO_000300: 1
SIO_000628: feature:62272-62471:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 27.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 27.
sequence version: OW387803.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6201854
topology: linear
RO_0000086: SO_0000987
location: 1..6201854
location: region:1-6201854:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6201854:1
position: 6201854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6201854:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1108569
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 894925..895124
location: region:894925-895124:1
BFO_0000051: feature:894925-895124:1:region
SIO_000974: a07afa47-d247-4d80-8b2b-d8c82f6b4854

position:894925:1
position: 894925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:895124:1
position: 895124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a07afa47-d247-4d80-8b2b-d8c82f6b4854
SIO_000300: 1
SIO_000628: feature:894925-895124:1:region

Synanthedon andrenaeformis genome assembly, chromosome: 28.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 28.
sequence version: OW387804.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5534748
topology: linear
RO_0000086: SO_0000987
location: 1..5534748
location: region:1-5534748:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5534748:1
position: 5534748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5534748:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 28
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 29.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 29.
sequence version: OW387805.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5344122
topology: linear
RO_0000086: SO_0000987
location: 1..5344122
location: region:1-5344122:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5344122:1
position: 5344122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5344122:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 29
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, chromosome: 30.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, chromosome: 30.
sequence version: OW387806.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5174083
topology: linear
RO_0000086: SO_0000987
location: 1..5174083
location: region:1-5174083:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5174083:1
position: 5174083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5174083:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
chromosome: 30
mol type: genomic DNA

Synanthedon andrenaeformis genome assembly, organelle: mitochondrion.
type: Entry
definition: Synanthedon andrenaeformis genome assembly, organelle: mitochondrion.
sequence version: OW387807.2
sequence date: 2022-09-15
sequence: sequence
division: INV
source: mitochondrion Synanthedon andrenaeformis
organism: Synanthedon andrenaeformis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon.
reference: 1
reference: 2
comment: The assembly ilSynAndr1.2 is based on 106x PacBio data, 10X\nGenomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16650
topology: linear
RO_0000086: SO_0000987
location: 1..16650
location: region:1-16650:1
RO_0002162: 1108569

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (14-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16650:1
position: 16650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16650:1:source
BFO_0000050: sequence
organism: Synanthedon andrenaeformis
organelle: mitochondrion
mol type: genomic DNA

Sarcophaga subvicina genome assembly, chromosome: 1.
type: Entry
definition: Sarcophaga subvicina genome assembly, chromosome: 1.
sequence version: OW388080.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Sarcophaga subvicina
organism: Sarcophaga subvicina
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
reference: 2
comment: The assembly idSarSubv1.2 is based on 65x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Male specimen with known XY sex\ndetermination system, however we have been unable to identify Y\nsequences.\nThe X chromosome is assembled from scaffolds of undetermined order\nand\norientation

sequence
subclass of: SO_0000001
sequence length: 165687905
topology: linear
RO_0000086: SO_0000987
location: 1..165687905
location: region:1-165687905:1
RO_0002162: 236850

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (30-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165687905:1
position: 165687905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-165687905:1:source
BFO_0000050: sequence
organism: Sarcophaga subvicina
chromosome: 1
mol type: genomic DNA

236850
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22650619..22650818
location: region:22650619-22650818:1
BFO_0000051: feature:22650619-22650818:1:region
SIO_000974: 339b8cf8-a1a7-4b99-bccb-43723eab0dc0

position:22650619:1
position: 22650619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22650818:1
position: 22650818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

339b8cf8-a1a7-4b99-bccb-43723eab0dc0
SIO_000300: 1
SIO_000628: feature:22650619-22650818:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37478319..37478518
location: region:37478319-37478518:1
BFO_0000051: feature:37478319-37478518:1:region
SIO_000974: 2518e9b4-9e5e-4c3c-a816-cccbdb2dfde5

position:37478319:1
position: 37478319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37478518:1
position: 37478518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2518e9b4-9e5e-4c3c-a816-cccbdb2dfde5
SIO_000300: 1
SIO_000628: feature:37478319-37478518:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39550001..39550200
location: region:39550001-39550200:1
BFO_0000051: feature:39550001-39550200:1:region
SIO_000974: bcf0c4e0-5957-4798-9327-b3616d8c6449

position:39550001:1
position: 39550001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39550200:1
position: 39550200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bcf0c4e0-5957-4798-9327-b3616d8c6449
SIO_000300: 1
SIO_000628: feature:39550001-39550200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40964479..40964678
location: region:40964479-40964678:1
BFO_0000051: feature:40964479-40964678:1:region
SIO_000974: a1a924ac-b4eb-4545-84af-e52bba598a8e

position:40964479:1
position: 40964479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40964678:1
position: 40964678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a1a924ac-b4eb-4545-84af-e52bba598a8e
SIO_000300: 1
SIO_000628: feature:40964479-40964678:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44814559..44814758
location: region:44814559-44814758:1
BFO_0000051: feature:44814559-44814758:1:region
SIO_000974: 25daad07-f527-456f-a765-bc0993504f17

position:44814559:1
position: 44814559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44814758:1
position: 44814758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

25daad07-f527-456f-a765-bc0993504f17
SIO_000300: 1
SIO_000628: feature:44814559-44814758:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58655281..58655480
location: region:58655281-58655480:1
BFO_0000051: feature:58655281-58655480:1:region
SIO_000974: 4368b11a-39ea-4b45-9a4a-8d49652bdeb0

position:58655281:1
position: 58655281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58655480:1
position: 58655480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4368b11a-39ea-4b45-9a4a-8d49652bdeb0
SIO_000300: 1
SIO_000628: feature:58655281-58655480:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61373481..61373680
location: region:61373481-61373680:1
BFO_0000051: feature:61373481-61373680:1:region
SIO_000974: 2e2b28fa-dd51-4624-aec0-a2ba36b4b096

position:61373481:1
position: 61373481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61373680:1
position: 61373680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e2b28fa-dd51-4624-aec0-a2ba36b4b096
SIO_000300: 1
SIO_000628: feature:61373481-61373680:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 62460235..62460434
location: region:62460235-62460434:1
BFO_0000051: feature:62460235-62460434:1:region
SIO_000974: cd568e5f-5ab8-443f-9920-0d96a2c77e4f

position:62460235:1
position: 62460235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62460434:1
position: 62460434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cd568e5f-5ab8-443f-9920-0d96a2c77e4f
SIO_000300: 1
SIO_000628: feature:62460235-62460434:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63904517..63904716
location: region:63904517-63904716:1
BFO_0000051: feature:63904517-63904716:1:region
SIO_000974: efed28ee-a0a9-4f14-9583-b2bb2a320e09

position:63904517:1
position: 63904517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63904716:1
position: 63904716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efed28ee-a0a9-4f14-9583-b2bb2a320e09
SIO_000300: 1
SIO_000628: feature:63904517-63904716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64335180..64335379
location: region:64335180-64335379:1
BFO_0000051: feature:64335180-64335379:1:region
SIO_000974: 7ca2f72d-d714-42b9-8c3f-78bd32454353

position:64335180:1
position: 64335180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64335379:1
position: 64335379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ca2f72d-d714-42b9-8c3f-78bd32454353
SIO_000300: 1
SIO_000628: feature:64335180-64335379:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64648697..64648896
location: region:64648697-64648896:1
BFO_0000051: feature:64648697-64648896:1:region
SIO_000974: eb989831-54ad-4693-a28d-5e1eccd045c0

position:64648697:1
position: 64648697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64648896:1
position: 64648896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb989831-54ad-4693-a28d-5e1eccd045c0
SIO_000300: 1
SIO_000628: feature:64648697-64648896:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 66285396..66285595
location: region:66285396-66285595:1
BFO_0000051: feature:66285396-66285595:1:region
SIO_000974: 52cc7bb3-9a67-4b1e-98b5-5e90f4f185fa

position:66285396:1
position: 66285396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66285595:1
position: 66285595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52cc7bb3-9a67-4b1e-98b5-5e90f4f185fa
SIO_000300: 1
SIO_000628: feature:66285396-66285595:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 67012541..67012740
location: region:67012541-67012740:1
BFO_0000051: feature:67012541-67012740:1:region
SIO_000974: 46b23e4d-a036-4849-9038-ff71c3e08c92

position:67012541:1
position: 67012541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67012740:1
position: 67012740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

46b23e4d-a036-4849-9038-ff71c3e08c92
SIO_000300: 1
SIO_000628: feature:67012541-67012740:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 73503741..73503940
location: region:73503741-73503940:1
BFO_0000051: feature:73503741-73503940:1:region
SIO_000974: 1afbd811-71b8-4a5c-b779-d04c4412c506

position:73503741:1
position: 73503741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73503940:1
position: 73503940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1afbd811-71b8-4a5c-b779-d04c4412c506
SIO_000300: 1
SIO_000628: feature:73503741-73503940:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 74737179..74737378
location: region:74737179-74737378:1
BFO_0000051: feature:74737179-74737378:1:region
SIO_000974: 17c26267-225e-4ceb-becf-9cbaec06d4f7

position:74737179:1
position: 74737179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74737378:1
position: 74737378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17c26267-225e-4ceb-becf-9cbaec06d4f7
SIO_000300: 1
SIO_000628: feature:74737179-74737378:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 77179828..77180027
location: region:77179828-77180027:1
BFO_0000051: feature:77179828-77180027:1:region
SIO_000974: 39f24db3-0122-4231-ab9a-a6335646440d

position:77179828:1
position: 77179828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77180027:1
position: 77180027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

39f24db3-0122-4231-ab9a-a6335646440d
SIO_000300: 1
SIO_000628: feature:77179828-77180027:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 79286964..79287163
location: region:79286964-79287163:1
BFO_0000051: feature:79286964-79287163:1:region
SIO_000974: a8564eef-f3a4-4142-81a7-371033e8aa68

position:79286964:1
position: 79286964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79287163:1
position: 79287163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8564eef-f3a4-4142-81a7-371033e8aa68
SIO_000300: 1
SIO_000628: feature:79286964-79287163:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 89993487..89993686
location: region:89993487-89993686:1
BFO_0000051: feature:89993487-89993686:1:region
SIO_000974: 0c13d2ec-1b48-4992-ac06-3659cd4e2c9e

position:89993487:1
position: 89993487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89993686:1
position: 89993686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c13d2ec-1b48-4992-ac06-3659cd4e2c9e
SIO_000300: 1
SIO_000628: feature:89993487-89993686:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 106072687..106072886
location: region:106072687-106072886:1
BFO_0000051: feature:106072687-106072886:1:region
SIO_000974: ba51273b-4d07-49f4-b696-5613d587182f

position:106072687:1
position: 106072687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106072886:1
position: 106072886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba51273b-4d07-49f4-b696-5613d587182f
SIO_000300: 1
SIO_000628: feature:106072687-106072886:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 111703835..111704034
location: region:111703835-111704034:1
BFO_0000051: feature:111703835-111704034:1:region
SIO_000974: 83f9dd64-98f1-424e-b854-50143f6f9c8e

position:111703835:1
position: 111703835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111704034:1
position: 111704034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

83f9dd64-98f1-424e-b854-50143f6f9c8e
SIO_000300: 1
SIO_000628: feature:111703835-111704034:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 113273888..113274087
location: region:113273888-113274087:1
BFO_0000051: feature:113273888-113274087:1:region
SIO_000974: 2404d982-c65f-4c7c-8cec-b845d76295c2

position:113273888:1
position: 113273888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113274087:1
position: 113274087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2404d982-c65f-4c7c-8cec-b845d76295c2
SIO_000300: 1
SIO_000628: feature:113273888-113274087:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 123948088..123948287
location: region:123948088-123948287:1
BFO_0000051: feature:123948088-123948287:1:region
SIO_000974: d795b9b0-a67c-4aa6-a710-01564e497ac4

position:123948088:1
position: 123948088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123948287:1
position: 123948287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d795b9b0-a67c-4aa6-a710-01564e497ac4
SIO_000300: 1
SIO_000628: feature:123948088-123948287:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 134454261..134454460
location: region:134454261-134454460:1
BFO_0000051: feature:134454261-134454460:1:region
SIO_000974: 9ba0bca3-1cb8-4d8f-9926-340ea6cb84d6

position:134454261:1
position: 134454261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134454460:1
position: 134454460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9ba0bca3-1cb8-4d8f-9926-340ea6cb84d6
SIO_000300: 1
SIO_000628: feature:134454261-134454460:1:region

Sarcophaga subvicina genome assembly, chromosome: 2.
type: Entry
definition: Sarcophaga subvicina genome assembly, chromosome: 2.
sequence version: OW388081.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Sarcophaga subvicina
organism: Sarcophaga subvicina
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
reference: 2
comment: The assembly idSarSubv1.2 is based on 65x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Male specimen with known XY sex\ndetermination system, however we have been unable to identify Y\nsequences.\nThe X chromosome is assembled from scaffolds of undetermined order\nand\norientation

sequence
subclass of: SO_0000001
sequence length: 138694203
topology: linear
RO_0000086: SO_0000987
location: 1..138694203
location: region:1-138694203:1
RO_0002162: 236850

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (30-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138694203:1
position: 138694203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-138694203:1:source
BFO_0000050: sequence
organism: Sarcophaga subvicina
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27190001..27190200
location: region:27190001-27190200:1
BFO_0000051: feature:27190001-27190200:1:region
SIO_000974: ac086a30-3189-46c4-a1a9-1a523b6f2ef4

position:27190001:1
position: 27190001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27190200:1
position: 27190200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac086a30-3189-46c4-a1a9-1a523b6f2ef4
SIO_000300: 1
SIO_000628: feature:27190001-27190200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39970778..39970977
location: region:39970778-39970977:1
BFO_0000051: feature:39970778-39970977:1:region
SIO_000974: 7f64df52-ad4b-4e59-b22c-a82b6d158522

position:39970778:1
position: 39970778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39970977:1
position: 39970977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f64df52-ad4b-4e59-b22c-a82b6d158522
SIO_000300: 1
SIO_000628: feature:39970778-39970977:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41474978..41475177
location: region:41474978-41475177:1
BFO_0000051: feature:41474978-41475177:1:region
SIO_000974: 8561a767-567a-4c4d-b5fb-1238bbae868a

position:41474978:1
position: 41474978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41475177:1
position: 41475177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8561a767-567a-4c4d-b5fb-1238bbae868a
SIO_000300: 1
SIO_000628: feature:41474978-41475177:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47190411..47190610
location: region:47190411-47190610:1
BFO_0000051: feature:47190411-47190610:1:region
SIO_000974: b2bf4747-b90f-4487-a090-2bcf53e08b4f

position:47190411:1
position: 47190411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47190610:1
position: 47190610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b2bf4747-b90f-4487-a090-2bcf53e08b4f
SIO_000300: 1
SIO_000628: feature:47190411-47190610:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54277025..54277224
location: region:54277025-54277224:1
BFO_0000051: feature:54277025-54277224:1:region
SIO_000974: e4f561d8-5884-4bf6-84cf-3db6a1b5b860

position:54277025:1
position: 54277025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54277224:1
position: 54277224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4f561d8-5884-4bf6-84cf-3db6a1b5b860
SIO_000300: 1
SIO_000628: feature:54277025-54277224:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56032176..56032375
location: region:56032176-56032375:1
BFO_0000051: feature:56032176-56032375:1:region
SIO_000974: 805c3b89-4895-4307-9ea0-ba05826c7e4c

position:56032176:1
position: 56032176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56032375:1
position: 56032375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

805c3b89-4895-4307-9ea0-ba05826c7e4c
SIO_000300: 1
SIO_000628: feature:56032176-56032375:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56476747..56476946
location: region:56476747-56476946:1
BFO_0000051: feature:56476747-56476946:1:region
SIO_000974: 0fa7093b-7f5a-4dce-8fbb-ae7f15610618

position:56476747:1
position: 56476747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56476946:1
position: 56476946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0fa7093b-7f5a-4dce-8fbb-ae7f15610618
SIO_000300: 1
SIO_000628: feature:56476747-56476946:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57040735..57040934
location: region:57040735-57040934:1
BFO_0000051: feature:57040735-57040934:1:region
SIO_000974: d1479bdd-8641-48d5-b18a-5904b9b890e9

position:57040735:1
position: 57040735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57040934:1
position: 57040934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1479bdd-8641-48d5-b18a-5904b9b890e9
SIO_000300: 1
SIO_000628: feature:57040735-57040934:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57154666..57154865
location: region:57154666-57154865:1
BFO_0000051: feature:57154666-57154865:1:region
SIO_000974: 453e74fb-f4e1-433e-8993-7399a43cd394

position:57154666:1
position: 57154666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57154865:1
position: 57154865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

453e74fb-f4e1-433e-8993-7399a43cd394
SIO_000300: 1
SIO_000628: feature:57154666-57154865:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57857524..57857723
location: region:57857524-57857723:1
BFO_0000051: feature:57857524-57857723:1:region
SIO_000974: d8701d76-f0d8-42a6-8a8d-277de3e39fa2

position:57857524:1
position: 57857524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57857723:1
position: 57857723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8701d76-f0d8-42a6-8a8d-277de3e39fa2
SIO_000300: 1
SIO_000628: feature:57857524-57857723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58209850..58210049
location: region:58209850-58210049:1
BFO_0000051: feature:58209850-58210049:1:region
SIO_000974: f217c3e6-a87d-47bc-ab4f-fcb6c7c47dab

position:58209850:1
position: 58209850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58210049:1
position: 58210049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f217c3e6-a87d-47bc-ab4f-fcb6c7c47dab
SIO_000300: 1
SIO_000628: feature:58209850-58210049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58448827..58449026
location: region:58448827-58449026:1
BFO_0000051: feature:58448827-58449026:1:region
SIO_000974: 207f298f-2ad9-415e-aaf2-9353a8b07787

position:58448827:1
position: 58448827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58449026:1
position: 58449026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

207f298f-2ad9-415e-aaf2-9353a8b07787
SIO_000300: 1
SIO_000628: feature:58448827-58449026:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58517420..58517619
location: region:58517420-58517619:1
BFO_0000051: feature:58517420-58517619:1:region
SIO_000974: 32867873-f55d-49f7-812c-72fa749809b6

position:58517420:1
position: 58517420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58517619:1
position: 58517619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32867873-f55d-49f7-812c-72fa749809b6
SIO_000300: 1
SIO_000628: feature:58517420-58517619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58666410..58666609
location: region:58666410-58666609:1
BFO_0000051: feature:58666410-58666609:1:region
SIO_000974: 6c78dcfd-fdba-42e8-836e-71e2b0c1ff4f

position:58666410:1
position: 58666410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58666609:1
position: 58666609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c78dcfd-fdba-42e8-836e-71e2b0c1ff4f
SIO_000300: 1
SIO_000628: feature:58666410-58666609:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59014093..59014292
location: region:59014093-59014292:1
BFO_0000051: feature:59014093-59014292:1:region
SIO_000974: eb4e2e49-7722-45e1-8985-8f955d43f372

position:59014093:1
position: 59014093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59014292:1
position: 59014292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb4e2e49-7722-45e1-8985-8f955d43f372
SIO_000300: 1
SIO_000628: feature:59014093-59014292:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59112946..59113145
location: region:59112946-59113145:1
BFO_0000051: feature:59112946-59113145:1:region
SIO_000974: eb7c05b8-0830-4f21-a77f-c072261a2988

position:59112946:1
position: 59112946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59113145:1
position: 59113145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb7c05b8-0830-4f21-a77f-c072261a2988
SIO_000300: 1
SIO_000628: feature:59112946-59113145:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 60115917..60116116
location: region:60115917-60116116:1
BFO_0000051: feature:60115917-60116116:1:region
SIO_000974: 410e7bc0-474b-4690-b94e-5f357f3e39dc

position:60115917:1
position: 60115917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60116116:1
position: 60116116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

410e7bc0-474b-4690-b94e-5f357f3e39dc
SIO_000300: 1
SIO_000628: feature:60115917-60116116:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 60367691..60367890
location: region:60367691-60367890:1
BFO_0000051: feature:60367691-60367890:1:region
SIO_000974: 8c4b91c6-9a0b-4ca8-888a-3bf058cb5489

position:60367691:1
position: 60367691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60367890:1
position: 60367890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c4b91c6-9a0b-4ca8-888a-3bf058cb5489
SIO_000300: 1
SIO_000628: feature:60367691-60367890:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 60539213..60539412
location: region:60539213-60539412:1
BFO_0000051: feature:60539213-60539412:1:region
SIO_000974: 9439a7d2-e68b-487c-aba3-9ec67abf3c61

position:60539213:1
position: 60539213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60539412:1
position: 60539412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9439a7d2-e68b-487c-aba3-9ec67abf3c61
SIO_000300: 1
SIO_000628: feature:60539213-60539412:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63451698..63451897
location: region:63451698-63451897:1
BFO_0000051: feature:63451698-63451897:1:region
SIO_000974: cb1cea38-8952-418d-952d-389e94c2a39c

position:63451698:1
position: 63451698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63451897:1
position: 63451897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb1cea38-8952-418d-952d-389e94c2a39c
SIO_000300: 1
SIO_000628: feature:63451698-63451897:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63565150..63565349
location: region:63565150-63565349:1
BFO_0000051: feature:63565150-63565349:1:region
SIO_000974: 244f7563-52a0-4331-8aed-78def2a77dd8

position:63565150:1
position: 63565150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63565349:1
position: 63565349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

244f7563-52a0-4331-8aed-78def2a77dd8
SIO_000300: 1
SIO_000628: feature:63565150-63565349:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 64527977..64528176
location: region:64527977-64528176:1
BFO_0000051: feature:64527977-64528176:1:region
SIO_000974: c8778029-106a-4e04-894c-6a7506827951

position:64527977:1
position: 64527977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64528176:1
position: 64528176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8778029-106a-4e04-894c-6a7506827951
SIO_000300: 1
SIO_000628: feature:64527977-64528176:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 68822433..68822632
location: region:68822433-68822632:1
BFO_0000051: feature:68822433-68822632:1:region
SIO_000974: 18b8f8ef-8b77-456e-9851-0c34c29955d9

position:68822433:1
position: 68822433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68822632:1
position: 68822632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18b8f8ef-8b77-456e-9851-0c34c29955d9
SIO_000300: 1
SIO_000628: feature:68822433-68822632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 68933313..68933512
location: region:68933313-68933512:1
BFO_0000051: feature:68933313-68933512:1:region
SIO_000974: a211d7a2-8149-4ef5-8da1-c5c7dedf961a

position:68933313:1
position: 68933313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68933512:1
position: 68933512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a211d7a2-8149-4ef5-8da1-c5c7dedf961a
SIO_000300: 1
SIO_000628: feature:68933313-68933512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 69181015..69181214
location: region:69181015-69181214:1
BFO_0000051: feature:69181015-69181214:1:region
SIO_000974: 78fd6abc-86d5-4eec-b0bc-ff8bfc89cdef

position:69181015:1
position: 69181015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69181214:1
position: 69181214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

78fd6abc-86d5-4eec-b0bc-ff8bfc89cdef
SIO_000300: 1
SIO_000628: feature:69181015-69181214:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 86151415..86151614
location: region:86151415-86151614:1
BFO_0000051: feature:86151415-86151614:1:region
SIO_000974: 10c4dede-4f2a-46be-bfd5-589f798d3966

position:86151415:1
position: 86151415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86151614:1
position: 86151614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10c4dede-4f2a-46be-bfd5-589f798d3966
SIO_000300: 1
SIO_000628: feature:86151415-86151614:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 92369414..92369613
location: region:92369414-92369613:1
BFO_0000051: feature:92369414-92369613:1:region
SIO_000974: 2d948648-51c7-4891-941a-55ea2f7a9eab

position:92369414:1
position: 92369414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92369613:1
position: 92369613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d948648-51c7-4891-941a-55ea2f7a9eab
SIO_000300: 1
SIO_000628: feature:92369414-92369613:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 101162755..101162954
location: region:101162755-101162954:1
BFO_0000051: feature:101162755-101162954:1:region
SIO_000974: 7d2af6dc-0121-4476-b5e6-7f7b4dfb942e

position:101162755:1
position: 101162755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101162954:1
position: 101162954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d2af6dc-0121-4476-b5e6-7f7b4dfb942e
SIO_000300: 1
SIO_000628: feature:101162755-101162954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 109002981..109003180
location: region:109002981-109003180:1
BFO_0000051: feature:109002981-109003180:1:region
SIO_000974: 0221b619-019e-4e95-a1d8-85a2f743a0fa

position:109002981:1
position: 109002981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109003180:1
position: 109003180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0221b619-019e-4e95-a1d8-85a2f743a0fa
SIO_000300: 1
SIO_000628: feature:109002981-109003180:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 110987217..110987416
location: region:110987217-110987416:1
BFO_0000051: feature:110987217-110987416:1:region
SIO_000974: 8757ca74-38b1-4a76-b368-5e7956f4fc24

position:110987217:1
position: 110987217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110987416:1
position: 110987416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8757ca74-38b1-4a76-b368-5e7956f4fc24
SIO_000300: 1
SIO_000628: feature:110987217-110987416:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 117661783..117661982
location: region:117661783-117661982:1
BFO_0000051: feature:117661783-117661982:1:region
SIO_000974: 8fdca551-1c01-46ee-af4d-71845d38103e

position:117661783:1
position: 117661783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117661982:1
position: 117661982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8fdca551-1c01-46ee-af4d-71845d38103e
SIO_000300: 1
SIO_000628: feature:117661783-117661982:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 117770983..117771182
location: region:117770983-117771182:1
BFO_0000051: feature:117770983-117771182:1:region
SIO_000974: c0f3cc0d-523c-43b6-84dd-df65b5d6b944

position:117770983:1
position: 117770983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117771182:1
position: 117771182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0f3cc0d-523c-43b6-84dd-df65b5d6b944
SIO_000300: 1
SIO_000628: feature:117770983-117771182:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 123356393..123356592
location: region:123356393-123356592:1
BFO_0000051: feature:123356393-123356592:1:region
SIO_000974: 984626fd-7836-4eca-8464-d5a0e0da19c4

position:123356393:1
position: 123356393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123356592:1
position: 123356592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

984626fd-7836-4eca-8464-d5a0e0da19c4
SIO_000300: 1
SIO_000628: feature:123356393-123356592:1:region

Sarcophaga subvicina genome assembly, chromosome: 3.
type: Entry
definition: Sarcophaga subvicina genome assembly, chromosome: 3.
sequence version: OW388082.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Sarcophaga subvicina
organism: Sarcophaga subvicina
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Sarcophagidae; Sarcophaga; Sarcophaga.
reference: 1
reference: 2
comment: The assembly idSarSubv1.2 is based on 65x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Male specimen with known XY sex\ndetermination system, however we have been unable to identify Y\nsequences.\nThe X chromosome is assembled from scaffolds of undetermined order\nand\norientation

sequence
subclass of: SO_0000001
sequence length: 122749534
topology: linear
RO_0000086: SO_0000987
location: 1..122749534
location: region:1-122749534:1
RO_0002162: 236850

1
journal: Submitted (02-APR-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (30-SEP-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122749534:1
position: 122749534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-122749534:1:source
BFO_0000050: sequence
organism: Sarcophaga subvicina
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10196221..10196420
location: region:10196221-10196420:1
BFO_0000051: feature:10196221-10196420:1:region
SIO_000974: a4017e3c-1d9d-41b8-b1a3-e0a3baf3e829

position:10196221:1
position: 10196221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10196420:1
position: 10196420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4017e3c-1d9d-41b8-b1a3-e0a3baf3e829
SIO_000300: 1
SIO_000628: feature:10196221-10196420:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22923457..22923656
location: region:22923457-22923656:1
BFO_0000051: feature:22923457-22923656:1:region
SIO_000974: 287493d0-fb5a-4821-b5af-ad4cefd601b6

position:22923457:1
position: 22923457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22923656:1
position: 22923656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

287493d0-fb5a-4821-b5af-ad4cefd601b6
SIO_000300: 1
SIO_000628: feature:22923457-22923656:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27147051..27147250
location: region:27147051-27147250:1
BFO_0000051: feature:27147051-27147250:1:region
SIO_000974: bd83d4ca-3193-4d7a-b52d-896bec86e342

position:27147051:1
position: 27147051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27147250:1
position: 27147250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd83d4ca-3193-4d7a-b52d-896bec86e342
SIO_000300: 1
SIO_000628: feature:27147051-27147250:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36791480..36791679
location: region:36791480-36791679:1
BFO_0000051: feature:36791480-36791679:1:region
SIO_000974: 458c79fc-28fe-41eb-a7e4-1cbc80d6391e

position:36791480:1
position: 36791480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36791679:1
position: 36791679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

458c79fc-28fe-41eb-a7e4-1cbc80d6391e
SIO_000300: 1
SIO_000628: feature:36791480-36791679:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42127210..42127409
location: region:42127210-42127409:1
BFO_0000051: feature:42127210-42127409:1:region
SIO_000974: 4f4835ae-7356-4432-b016-e72f02b0d549

position:42127210:1
position: 42127210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42127409:1
position: 42127409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f4835ae-7356-4432-b016-e72f02b0d549
SIO_000300: 1
SIO_000628: feature:42127210-42127409:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52418347..52418546
location: region:52418347-52418546:1
BFO_0000051: feature:52418347-52418546:1:region
SIO_000974: 73e693fa-6d1c-4b72-9a04-5df91ef56a43

position:52418347:1
position: 52418347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52418546:1
position: 52418546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73e693fa-6d1c-4b72-9a04-5df91ef56a43
SIO_000300: 1
SIO_000628: feature:52418347-52418546:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53689547..53689746
location: region:53689547-53689746:1
BFO_0000051: feature:53689547-53689746:1:region
SIO_000974: f5bd807b-6303-424d-bd84-fd296881e26c

position:53689547:1
position: 53689547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53689746:1
position: 53689746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f5bd807b-6303-424d-bd84-fd296881e26c
SIO_000300: 1
SIO_000628: feature:53689547-53689746:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53972638..53972837
location: region:53972638-53972837:1
BFO_0000051: feature:53972638-53972837:1:region
SIO_000974: 937ec34d-8619-4d98-8cae-bab0c6cb9851

position:53972638:1
position: 53972638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53972837:1
position: 53972837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

937ec34d-8619-4d98-8cae-bab0c6cb9851
SIO_000300: 1
SIO_000628: feature:53972638-53972837:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54204838..54205037
location: region:54204838-54205037:1
BFO_0000051: feature:54204838-54205037:1:region
SIO_000974: 41c8af9f-c506-4123-85d7-7efb4d8b9567

position:54204838:1
position: 54204838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54205037:1
position: 54205037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41c8af9f-c506-4123-85d7-7efb4d8b9567
SIO_000300: 1
SIO_000628: feature:54204838-54205037:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54439626..54439825
location: region:54439626-54439825:1
BFO_0000051: feature:54439626-54439825:1:region
SIO_000974: d327fa1e-2d4d-4988-827b-10d02d6aa2b8

position:54439626:1
position: 54439626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54439825:1
position: 54439825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d327fa1e-2d4d-4988-827b-10d02d6aa2b8
SIO_000300: 1
SIO_000628: feature:54439626-54439825:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56407411..56407610
location: region:56407411-56407610:1
BFO_0000051: feature:56407411-56407610:1:region
SIO_000974: f927523c-9a1e-4f00-9526-e5ee9373fe2b

position:56407411:1
position: 56407411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56407610:1
position: 56407610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f927523c-9a1e-4f00-9526-e5ee9373fe2b
SIO_000300: 1
SIO_000628: feature:56407411-56407610:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56801611..56801810
location: region:56801611-56801810:1
BFO_0000051: feature:56801611-56801810:1:region
SIO_000974: 9a3a1fbe-1e1c-4663-b75e-6ed3df0ddbbe

position:56801611:1
position: 56801611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56801810:1
position: 56801810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a3a1fbe-1e1c-4663-b75e-6ed3df0ddbbe
SIO_000300: 1
SIO_000628: feature:56801611-56801810:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57908748..57908947
location: region:57908748-57908947:1
BFO_0000051: feature:57908748-57908947:1:region
SIO_000974: 0bd35c55-ebad-43d0-922c-1f73b63e9482

position:57908748:1
position: 57908748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57908947:1
position: 57908947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0bd35c55-ebad-43d0-922c-1f73b63e9482
SIO_000300: 1
SIO_000628: feature:57908748-57908947:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58010896..58011095
location: region:58010896-58011095:1
BFO_0000051: feature:58010896-58011095:1:region
SIO_000974: d4bef87f-9594-4d6d-85e6-d65615466d1c

position:58010896:1
position: 58010896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58011095:1
position: 58011095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d4bef87f-9594-4d6d-85e6-d65615466d1c
SIO_000300: 1
SIO_000628: feature:58010896-58011095:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 236850
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58180055..58180254
location: region:58180055-58180254:1
BFO_0000051: feature:58180055-58180254:1:region
SIO_000974: 66ecdaad-ba8a-46f7-a48a-a9301a380fa2

position:58180055:1
position: 58180055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58180254:1
position: 58180254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000628: feature:58180055-58180254:1:region

assembly_gap
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RO_0002162: 236850
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:58307216-58307415:1:region

assembly_gap
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RO_0002162: 236850
estimated length: 200
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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assembly_gap
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SIO_000300: 1
SIO_000628: feature:69078931-69079330:1:region

assembly_gap
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SIO_000300: 1
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assembly_gap
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RO_0002162: 236850
estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:86699881-86700080:1:region
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SIO_000300: 1
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assembly_gap
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 236850
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SIO_000300: 1
SIO_000628: feature:94319848-94320047:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:102294023-102294222:1:region
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SIO_000300: 1
SIO_000628: feature:102294023-102294222:1:region

assembly_gap
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estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:105032348-105032547:1:region
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SIO_000300: 1
SIO_000628: feature:105032348-105032547:1:region

assembly_gap
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:110513452-110513651:1:region
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SIO_000300: 1
SIO_000628: feature:110513452-110513651:1:region

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RO_0002162: 236850
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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