Euclidia mi genome assembly, chromosome: 26.
type: Entry
definition: Euclidia mi genome assembly, chromosome: 26.
sequence version: OX123207.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 38253690
topology: linear
RO_0000086: SO_0000987
location: 1..38253690
location: region:1-38253690:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38253690:1
position: 38253690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38253690:1:source
BFO_0000050: sequence
organism: Euclidia mi
chromosome: 26
mol type: genomic DNA

938167
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4097279..4097478
location: region:4097279-4097478:1
BFO_0000051: feature:4097279-4097478:1:region
SIO_000974: 41ee3ee2-a765-4690-b867-f56e5c98b2f1

position:4097279:1
position: 4097279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4097478:1
position: 4097478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41ee3ee2-a765-4690-b867-f56e5c98b2f1
SIO_000300: 1
SIO_000628: feature:4097279-4097478:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4370254..4370453
location: region:4370254-4370453:1
BFO_0000051: feature:4370254-4370453:1:region
SIO_000974: cec9e06d-3578-4100-b4d7-24aa467dc668

position:4370254:1
position: 4370254
reference: sequence
type: ForwardStrandPosition
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position:4370453:1
position: 4370453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4370254-4370453:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7605993..7606192
location: region:7605993-7606192:1
BFO_0000051: feature:7605993-7606192:1:region
SIO_000974: 7d9412be-8289-475f-8b50-166ff04c2130

position:7605993:1
position: 7605993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7606192:1
position: 7606192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d9412be-8289-475f-8b50-166ff04c2130
SIO_000300: 1
SIO_000628: feature:7605993-7606192:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8298530..8298729
location: region:8298530-8298729:1
BFO_0000051: feature:8298530-8298729:1:region
SIO_000974: 72e122d8-6f33-47fe-b97c-569cbc928088

position:8298530:1
position: 8298530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8298729:1
position: 8298729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72e122d8-6f33-47fe-b97c-569cbc928088
SIO_000300: 1
SIO_000628: feature:8298530-8298729:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8668064..8668263
location: region:8668064-8668263:1
BFO_0000051: feature:8668064-8668263:1:region
SIO_000974: 1019487f-f83c-4d35-9c0c-60d760cd3a76

position:8668064:1
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reference: sequence
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position:8668263:1
position: 8668263
reference: sequence
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SIO_000300: 1
SIO_000628: feature:8668064-8668263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9269303..9269502
location: region:9269303-9269502:1
BFO_0000051: feature:9269303-9269502:1:region
SIO_000974: b3546d37-0582-471f-a3a5-5f563cfcbf76

position:9269303:1
position: 9269303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9269502:1
position: 9269502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9269303-9269502:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10314719..10314918
location: region:10314719-10314918:1
BFO_0000051: feature:10314719-10314918:1:region
SIO_000974: b0ffb42a-05be-4577-b37d-8003ed12a9a4

position:10314719:1
position: 10314719
reference: sequence
type: ForwardStrandPosition
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position:10314918:1
position: 10314918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10314719-10314918:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10590221..10590420
location: region:10590221-10590420:1
BFO_0000051: feature:10590221-10590420:1:region
SIO_000974: 2ae98256-7b2a-4ab0-b2d8-a6e4010e04c0

position:10590221:1
position: 10590221
reference: sequence
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position:10590420:1
position: 10590420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10590221-10590420:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11781002..11781201
location: region:11781002-11781201:1
BFO_0000051: feature:11781002-11781201:1:region
SIO_000974: 82bf8025-18a6-44f6-9a90-c6cae8076899

position:11781002:1
position: 11781002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11781201:1
position: 11781201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11781002-11781201:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14257765..14257964
location: region:14257765-14257964:1
BFO_0000051: feature:14257765-14257964:1:region
SIO_000974: efdc0afc-8fd1-4098-af68-5aa947072483

position:14257765:1
position: 14257765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14257964:1
position: 14257964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:14257765-14257964:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15612122..15612321
location: region:15612122-15612321:1
BFO_0000051: feature:15612122-15612321:1:region
SIO_000974: da7c6f83-5e56-4635-8e03-0409aebdda07

position:15612122:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15612321:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15612122-15612321:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17215836..17216035
location: region:17215836-17216035:1
BFO_0000051: feature:17215836-17216035:1:region
SIO_000974: 61a73332-af04-4b35-9ec4-85b718ebec87

position:17215836:1
position: 17215836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17216035:1
position: 17216035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17215836-17216035:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22959823..22960022
location: region:22959823-22960022:1
BFO_0000051: feature:22959823-22960022:1:region
SIO_000974: 4c759fc4-8a1e-4edc-9441-0ede2ba32fd9

position:22959823:1
position: 22959823
reference: sequence
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type: ExactPosition

position:22960022:1
position: 22960022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:22959823-22960022:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24595680..24595879
location: region:24595680-24595879:1
BFO_0000051: feature:24595680-24595879:1:region
SIO_000974: e93fdad5-b798-4288-9ab7-f6883cebd819

position:24595680:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:24595680-24595879:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25917860..25918059
location: region:25917860-25918059:1
BFO_0000051: feature:25917860-25918059:1:region
SIO_000974: 79f9f051-6db4-4155-8160-714c2b53b41b

position:25917860:1
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reference: sequence
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type: ExactPosition

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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:25917860-25918059:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28635292..28635491
location: region:28635292-28635491:1
BFO_0000051: feature:28635292-28635491:1:region
SIO_000974: 1dea75f0-88fa-4024-979f-5418f66be7a0

position:28635292:1
position: 28635292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28635491:1
position: 28635491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1dea75f0-88fa-4024-979f-5418f66be7a0
SIO_000300: 1
SIO_000628: feature:28635292-28635491:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32801724..32801923
location: region:32801724-32801923:1
BFO_0000051: feature:32801724-32801923:1:region
SIO_000974: bdf14684-1377-4f66-8a81-fba579f8d4c4

position:32801724:1
position: 32801724
reference: sequence
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type: ExactPosition

position:32801923:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:32801724-32801923:1:region

Euclidia mi genome assembly, chromosome: 27.
type: Entry
definition: Euclidia mi genome assembly, chromosome: 27.
sequence version: OX123208.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 30012474
topology: linear
RO_0000086: SO_0000987
location: 1..30012474
location: region:1-30012474:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30012474:1
position: 30012474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30012474:1:source
BFO_0000050: sequence
organism: Euclidia mi
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2962321..2962520
location: region:2962321-2962520:1
BFO_0000051: feature:2962321-2962520:1:region
SIO_000974: ce7ee888-4e07-4072-84f9-c7572e19632f

position:2962321:1
position: 2962321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2962520:1
position: 2962520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2962321-2962520:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3044099..3044298
location: region:3044099-3044298:1
BFO_0000051: feature:3044099-3044298:1:region
SIO_000974: 4f8ba0a3-3f0a-4c24-a5e1-4d4613fdb322

position:3044099:1
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reference: sequence
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type: ExactPosition

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position: 3044298
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:3044099-3044298:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6117774..6117973
location: region:6117774-6117973:1
BFO_0000051: feature:6117774-6117973:1:region
SIO_000974: 875bb4f1-6e4b-46fd-9de7-7f976c42fc4a

position:6117774:1
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reference: sequence
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type: ExactPosition

position:6117973:1
position: 6117973
reference: sequence
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SIO_000300: 1
SIO_000628: feature:6117774-6117973:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11036465..11036664
location: region:11036465-11036664:1
BFO_0000051: feature:11036465-11036664:1:region
SIO_000974: 0dd100fe-5c37-4abf-8d63-8aea34aa253d

position:11036465:1
position: 11036465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11036664:1
position: 11036664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11036465-11036664:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11820328..11820527
location: region:11820328-11820527:1
BFO_0000051: feature:11820328-11820527:1:region
SIO_000974: 2bdeec36-8c8c-4fbd-8829-295160579347

position:11820328:1
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reference: sequence
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type: ExactPosition

position:11820527:1
position: 11820527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11820328-11820527:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14046510..14046709
location: region:14046510-14046709:1
BFO_0000051: feature:14046510-14046709:1:region
SIO_000974: 461cd59f-2d68-40a8-98d5-98ac880bc760

position:14046510:1
position: 14046510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14046709:1
position: 14046709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:14046510-14046709:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19224822..19225021
location: region:19224822-19225021:1
BFO_0000051: feature:19224822-19225021:1:region
SIO_000974: 492b90b3-79a2-4e45-a039-162a192aed25

position:19224822:1
position: 19224822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19225021:1
position: 19225021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19224822-19225021:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19436224..19436423
location: region:19436224-19436423:1
BFO_0000051: feature:19436224-19436423:1:region
SIO_000974: 07eebf4b-ac68-43bd-b5f1-494fc7339907

position:19436224:1
position: 19436224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19436423:1
position: 19436423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19436224-19436423:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20549205..20549404
location: region:20549205-20549404:1
BFO_0000051: feature:20549205-20549404:1:region
SIO_000974: e36c92ce-cc27-4920-b23b-8b22f0bea289

position:20549205:1
position: 20549205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20549404:1
position: 20549404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:20549205-20549404:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26626405..26626604
location: region:26626405-26626604:1
BFO_0000051: feature:26626405-26626604:1:region
SIO_000974: a3673963-6fde-4491-8d8e-c4d98a0908c9

position:26626405:1
position: 26626405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26626604:1
position: 26626604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3673963-6fde-4491-8d8e-c4d98a0908c9
SIO_000300: 1
SIO_000628: feature:26626405-26626604:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27629715..27629914
location: region:27629715-27629914:1
BFO_0000051: feature:27629715-27629914:1:region
SIO_000974: 41a416dc-2af4-4f66-89ce-bcfcfd6a8b17

position:27629715:1
position: 27629715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27629914:1
position: 27629914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41a416dc-2af4-4f66-89ce-bcfcfd6a8b17
SIO_000300: 1
SIO_000628: feature:27629715-27629914:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28740394..28740593
location: region:28740394-28740593:1
BFO_0000051: feature:28740394-28740593:1:region
SIO_000974: 9345408f-2631-4d0a-8ef7-c3a9f3829027

position:28740394:1
position: 28740394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28740593:1
position: 28740593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9345408f-2631-4d0a-8ef7-c3a9f3829027
SIO_000300: 1
SIO_000628: feature:28740394-28740593:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29064962..29065161
location: region:29064962-29065161:1
BFO_0000051: feature:29064962-29065161:1:region
SIO_000974: 1f43c487-8ffd-4edb-98dc-2af24c6a4f93

position:29064962:1
position: 29064962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29065161:1
position: 29065161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f43c487-8ffd-4edb-98dc-2af24c6a4f93
SIO_000300: 1
SIO_000628: feature:29064962-29065161:1:region

Euclidia mi genome assembly, chromosome: 28.
type: Entry
definition: Euclidia mi genome assembly, chromosome: 28.
sequence version: OX123209.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 25789997
topology: linear
RO_0000086: SO_0000987
location: 1..25789997
location: region:1-25789997:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25789997:1
position: 25789997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25789997:1:source
BFO_0000050: sequence
organism: Euclidia mi
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3561618..3561817
location: region:3561618-3561817:1
BFO_0000051: feature:3561618-3561817:1:region
SIO_000974: 46406665-9d15-42d3-af91-61120fd75806

position:3561618:1
position: 3561618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3561817:1
position: 3561817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

46406665-9d15-42d3-af91-61120fd75806
SIO_000300: 1
SIO_000628: feature:3561618-3561817:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4340973..4341172
location: region:4340973-4341172:1
BFO_0000051: feature:4340973-4341172:1:region
SIO_000974: 439c2844-1604-40ee-b5cc-81d35b25ee86

position:4340973:1
position: 4340973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4341172:1
position: 4341172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

439c2844-1604-40ee-b5cc-81d35b25ee86
SIO_000300: 1
SIO_000628: feature:4340973-4341172:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5967510..5967709
location: region:5967510-5967709:1
BFO_0000051: feature:5967510-5967709:1:region
SIO_000974: a29c393e-2cd9-4318-b463-80690f335620

position:5967510:1
position: 5967510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5967709:1
position: 5967709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a29c393e-2cd9-4318-b463-80690f335620
SIO_000300: 1
SIO_000628: feature:5967510-5967709:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6268646..6268845
location: region:6268646-6268845:1
BFO_0000051: feature:6268646-6268845:1:region
SIO_000974: c3407cd8-047a-470d-8606-695d0c45105e

position:6268646:1
position: 6268646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6268845:1
position: 6268845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3407cd8-047a-470d-8606-695d0c45105e
SIO_000300: 1
SIO_000628: feature:6268646-6268845:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6579017..6579216
location: region:6579017-6579216:1
BFO_0000051: feature:6579017-6579216:1:region
SIO_000974: 0df807ab-d69e-4296-bf06-4995722743d3

position:6579017:1
position: 6579017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6579216:1
position: 6579216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0df807ab-d69e-4296-bf06-4995722743d3
SIO_000300: 1
SIO_000628: feature:6579017-6579216:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16145555..16145754
location: region:16145555-16145754:1
BFO_0000051: feature:16145555-16145754:1:region
SIO_000974: 5008c8f7-2064-42d9-8273-24cc1c86eabf

position:16145555:1
position: 16145555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16145754:1
position: 16145754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5008c8f7-2064-42d9-8273-24cc1c86eabf
SIO_000300: 1
SIO_000628: feature:16145555-16145754:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18011245..18011444
location: region:18011245-18011444:1
BFO_0000051: feature:18011245-18011444:1:region
SIO_000974: 3b23b85f-da49-4c52-819a-3b27fde1094f

position:18011245:1
position: 18011245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18011444:1
position: 18011444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b23b85f-da49-4c52-819a-3b27fde1094f
SIO_000300: 1
SIO_000628: feature:18011245-18011444:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18411107..18411306
location: region:18411107-18411306:1
BFO_0000051: feature:18411107-18411306:1:region
SIO_000974: 7292770c-2481-4796-8e32-f256022b539d

position:18411107:1
position: 18411107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18411306:1
position: 18411306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7292770c-2481-4796-8e32-f256022b539d
SIO_000300: 1
SIO_000628: feature:18411107-18411306:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19672506..19672705
location: region:19672506-19672705:1
BFO_0000051: feature:19672506-19672705:1:region
SIO_000974: 0e4ce54c-3887-486f-808d-279a87f34afc

position:19672506:1
position: 19672506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19672705:1
position: 19672705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e4ce54c-3887-486f-808d-279a87f34afc
SIO_000300: 1
SIO_000628: feature:19672506-19672705:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19972151..19972350
location: region:19972151-19972350:1
BFO_0000051: feature:19972151-19972350:1:region
SIO_000974: 00d56ef8-aec0-4c72-bc4c-5cf11f140e78

position:19972151:1
position: 19972151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19972350:1
position: 19972350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00d56ef8-aec0-4c72-bc4c-5cf11f140e78
SIO_000300: 1
SIO_000628: feature:19972151-19972350:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21641019..21641218
location: region:21641019-21641218:1
BFO_0000051: feature:21641019-21641218:1:region
SIO_000974: 1c83a841-052e-41c0-96c5-117c63920664

position:21641019:1
position: 21641019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21641218:1
position: 21641218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c83a841-052e-41c0-96c5-117c63920664
SIO_000300: 1
SIO_000628: feature:21641019-21641218:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22947010..22947209
location: region:22947010-22947209:1
BFO_0000051: feature:22947010-22947209:1:region
SIO_000974: 1060bdd1-78d5-46a6-8070-e3d981be9c2a

position:22947010:1
position: 22947010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22947209:1
position: 22947209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1060bdd1-78d5-46a6-8070-e3d981be9c2a
SIO_000300: 1
SIO_000628: feature:22947010-22947209:1:region

Euclidia mi genome assembly, chromosome: 29.
type: Entry
definition: Euclidia mi genome assembly, chromosome: 29.
sequence version: OX123210.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22016010
topology: linear
RO_0000086: SO_0000987
location: 1..22016010
location: region:1-22016010:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22016010:1
position: 22016010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22016010:1:source
BFO_0000050: sequence
organism: Euclidia mi
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 466101..466300
location: region:466101-466300:1
BFO_0000051: feature:466101-466300:1:region
SIO_000974: fbeda8ee-ce71-4aee-95da-829293f67d9b

position:466101:1
position: 466101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466300:1
position: 466300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbeda8ee-ce71-4aee-95da-829293f67d9b
SIO_000300: 1
SIO_000628: feature:466101-466300:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 956679..956878
location: region:956679-956878:1
BFO_0000051: feature:956679-956878:1:region
SIO_000974: e75a903c-42ac-4b97-94c0-4f60d05daf85

position:956679:1
position: 956679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:956878:1
position: 956878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e75a903c-42ac-4b97-94c0-4f60d05daf85
SIO_000300: 1
SIO_000628: feature:956679-956878:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5417503..5417702
location: region:5417503-5417702:1
BFO_0000051: feature:5417503-5417702:1:region
SIO_000974: 8bfd9cf4-0895-477d-a273-726bbd0e32fc

position:5417503:1
position: 5417503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5417702:1
position: 5417702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bfd9cf4-0895-477d-a273-726bbd0e32fc
SIO_000300: 1
SIO_000628: feature:5417503-5417702:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5655819..5656018
location: region:5655819-5656018:1
BFO_0000051: feature:5655819-5656018:1:region
SIO_000974: 7f1bfabc-100b-4857-8e8c-6fbcac6b8f12

position:5655819:1
position: 5655819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5656018:1
position: 5656018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f1bfabc-100b-4857-8e8c-6fbcac6b8f12
SIO_000300: 1
SIO_000628: feature:5655819-5656018:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12167834..12168033
location: region:12167834-12168033:1
BFO_0000051: feature:12167834-12168033:1:region
SIO_000974: 216dbf87-a5a5-4ae5-81e9-9ea218e51b41

position:12167834:1
position: 12167834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12168033:1
position: 12168033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

216dbf87-a5a5-4ae5-81e9-9ea218e51b41
SIO_000300: 1
SIO_000628: feature:12167834-12168033:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13286757..13286956
location: region:13286757-13286956:1
BFO_0000051: feature:13286757-13286956:1:region
SIO_000974: cfe4f5aa-5e0f-4065-a5d8-fe5fb7a9c4b3

position:13286757:1
position: 13286757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13286956:1
position: 13286956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cfe4f5aa-5e0f-4065-a5d8-fe5fb7a9c4b3
SIO_000300: 1
SIO_000628: feature:13286757-13286956:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14467299..14467498
location: region:14467299-14467498:1
BFO_0000051: feature:14467299-14467498:1:region
SIO_000974: 9c922aca-4c43-46e8-83d1-3f9948c7806f

position:14467299:1
position: 14467299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14467498:1
position: 14467498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c922aca-4c43-46e8-83d1-3f9948c7806f
SIO_000300: 1
SIO_000628: feature:14467299-14467498:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16385830..16386029
location: region:16385830-16386029:1
BFO_0000051: feature:16385830-16386029:1:region
SIO_000974: 2f06b8db-288d-4c73-9823-2dc0ad89d1e3

position:16385830:1
position: 16385830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16386029:1
position: 16386029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2f06b8db-288d-4c73-9823-2dc0ad89d1e3
SIO_000300: 1
SIO_000628: feature:16385830-16386029:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17864155..17864354
location: region:17864155-17864354:1
BFO_0000051: feature:17864155-17864354:1:region
SIO_000974: da62814a-bb24-4f09-b573-b53c3af7ee65

position:17864155:1
position: 17864155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17864354:1
position: 17864354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da62814a-bb24-4f09-b573-b53c3af7ee65
SIO_000300: 1
SIO_000628: feature:17864155-17864354:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19538013..19538212
location: region:19538013-19538212:1
BFO_0000051: feature:19538013-19538212:1:region
SIO_000974: 6100fce3-9296-44f8-a150-b721b1b1b739

position:19538013:1
position: 19538013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19538212:1
position: 19538212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6100fce3-9296-44f8-a150-b721b1b1b739
SIO_000300: 1
SIO_000628: feature:19538013-19538212:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19976485..19976684
location: region:19976485-19976684:1
BFO_0000051: feature:19976485-19976684:1:region
SIO_000974: bbbb2fed-a3b0-4cd0-a9eb-77d6d126908c

position:19976485:1
position: 19976485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19976684:1
position: 19976684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bbbb2fed-a3b0-4cd0-a9eb-77d6d126908c
SIO_000300: 1
SIO_000628: feature:19976485-19976684:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21853711..21853910
location: region:21853711-21853910:1
BFO_0000051: feature:21853711-21853910:1:region
SIO_000974: 96cf6397-8bee-4c28-8ef9-7ff90e030628

position:21853711:1
position: 21853711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21853910:1
position: 21853910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

96cf6397-8bee-4c28-8ef9-7ff90e030628
SIO_000300: 1
SIO_000628: feature:21853711-21853910:1:region

Euclidia mi genome assembly, chromosome: 30.
type: Entry
definition: Euclidia mi genome assembly, chromosome: 30.
sequence version: OX123211.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21307720
topology: linear
RO_0000086: SO_0000987
location: 1..21307720
location: region:1-21307720:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21307720:1
position: 21307720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21307720:1:source
BFO_0000050: sequence
organism: Euclidia mi
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2025534..2025733
location: region:2025534-2025733:1
BFO_0000051: feature:2025534-2025733:1:region
SIO_000974: a0d06ee7-039e-4992-bf57-c84b6c227175

position:2025534:1
position: 2025534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2025733:1
position: 2025733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0d06ee7-039e-4992-bf57-c84b6c227175
SIO_000300: 1
SIO_000628: feature:2025534-2025733:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2250816..2251015
location: region:2250816-2251015:1
BFO_0000051: feature:2250816-2251015:1:region
SIO_000974: e2e99807-031c-4524-bfbb-cd9348934555

position:2250816:1
position: 2250816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2251015:1
position: 2251015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2e99807-031c-4524-bfbb-cd9348934555
SIO_000300: 1
SIO_000628: feature:2250816-2251015:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 938167
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10398038..10398237
location: region:10398038-10398237:1
BFO_0000051: feature:10398038-10398237:1:region
SIO_000974: 6abae12c-9df2-4208-bff8-498ed3f950c8

position:10398038:1
position: 10398038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10398237:1
position: 10398237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6abae12c-9df2-4208-bff8-498ed3f950c8
SIO_000300: 1
SIO_000628: feature:10398038-10398237:1:region

Euclidia mi genome assembly, organelle: mitochondrion.
type: Entry
definition: Euclidia mi genome assembly, organelle: mitochondrion.
sequence version: OX123212.2
sequence date: 2022-10-07
sequence: sequence
division: INV
source: mitochondrion Euclidia mi
organism: Euclidia mi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Euclidia.
reference: 1
reference: 2
comment: The assembly ilEucMixx1.2 is based on 34x PacBio data and Arima\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, and Hi-C based scaffolding with YaHS. The mitochondrial\ngenome was\nassembled using MitoHiFi. Finally, the primary assembly was\nanalysed and\nmanually improved using rapid curation. Chromosome-scale scaffolds\nconfirmed by the Hi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15605
topology: linear
RO_0000086: SO_0000987
location: 1..15605
location: region:1-15605:1
RO_0002162: 938167

1
journal: Submitted (25-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (06-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15605:1
position: 15605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15605:1:source
BFO_0000050: sequence
organism: Euclidia mi
organelle: mitochondrion
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: Z.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: Z.
sequence version: OX155637.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18628966
topology: linear
RO_0000086: SO_0000987
location: 1..18628966
location: region:1-18628966:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18628966:1
position: 18628966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18628966:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: Z
mol type: genomic DNA

218720
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1912631..1912830
location: region:1912631-1912830:1
BFO_0000051: feature:1912631-1912830:1:region
SIO_000974: e0b49bfb-7090-4e5c-aaec-9d3b5ead2ad4

position:1912631:1
position: 1912631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1912830:1
position: 1912830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e0b49bfb-7090-4e5c-aaec-9d3b5ead2ad4
SIO_000300: 1
SIO_000628: feature:1912631-1912830:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1976044..1976243
location: region:1976044-1976243:1
BFO_0000051: feature:1976044-1976243:1:region
SIO_000974: 0a1b481d-d54f-4434-a499-a6650a6bc1a1

position:1976044:1
position: 1976044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1976243:1
position: 1976243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a1b481d-d54f-4434-a499-a6650a6bc1a1
SIO_000300: 1
SIO_000628: feature:1976044-1976243:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14376728..14376927
location: region:14376728-14376927:1
BFO_0000051: feature:14376728-14376927:1:region
SIO_000974: 514f7d78-3962-494d-a13c-7a4a206a8099

position:14376728:1
position: 14376728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14376927:1
position: 14376927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

514f7d78-3962-494d-a13c-7a4a206a8099
SIO_000300: 1
SIO_000628: feature:14376728-14376927:1:region

Carterocephalus palaemon genome assembly, chromosome: 1.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 1.
sequence version: OX155638.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16310687
topology: linear
RO_0000086: SO_0000987
location: 1..16310687
location: region:1-16310687:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16310687:1
position: 16310687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16310687:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 1
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 2.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 2.
sequence version: OX155639.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16285505
topology: linear
RO_0000086: SO_0000987
location: 1..16285505
location: region:1-16285505:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16285505:1
position: 16285505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16285505:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 2
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 3.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 3.
sequence version: OX155640.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15543554
topology: linear
RO_0000086: SO_0000987
location: 1..15543554
location: region:1-15543554:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15543554:1
position: 15543554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15543554:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 3
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 4.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 4.
sequence version: OX155641.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15411350
topology: linear
RO_0000086: SO_0000987
location: 1..15411350
location: region:1-15411350:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15411350:1
position: 15411350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15411350:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 4
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 5.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 5.
sequence version: OX155642.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15296262
topology: linear
RO_0000086: SO_0000987
location: 1..15296262
location: region:1-15296262:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15296262:1
position: 15296262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15296262:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15253593..15253792
location: region:15253593-15253792:1
BFO_0000051: feature:15253593-15253792:1:region
SIO_000974: d559b7ff-dc07-4e59-94c9-1dfc9384bdc8

position:15253593:1
position: 15253593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15253792:1
position: 15253792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d559b7ff-dc07-4e59-94c9-1dfc9384bdc8
SIO_000300: 1
SIO_000628: feature:15253593-15253792:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15279401..15279600
location: region:15279401-15279600:1
BFO_0000051: feature:15279401-15279600:1:region
SIO_000974: 7b236e69-f96e-4ef8-a32c-3d80426e6386

position:15279401:1
position: 15279401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15279600:1
position: 15279600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b236e69-f96e-4ef8-a32c-3d80426e6386
SIO_000300: 1
SIO_000628: feature:15279401-15279600:1:region

Carterocephalus palaemon genome assembly, chromosome: 6.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 6.
sequence version: OX155643.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14990583
topology: linear
RO_0000086: SO_0000987
location: 1..14990583
location: region:1-14990583:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14990583:1
position: 14990583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14990583:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 6
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 7.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 7.
sequence version: OX155644.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14614631
topology: linear
RO_0000086: SO_0000987
location: 1..14614631
location: region:1-14614631:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14614631:1
position: 14614631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14614631:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 7
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 8.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 8.
sequence version: OX155645.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14568648
topology: linear
RO_0000086: SO_0000987
location: 1..14568648
location: region:1-14568648:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14568648:1
position: 14568648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14568648:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 8
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 9.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 9.
sequence version: OX155646.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14253380
topology: linear
RO_0000086: SO_0000987
location: 1..14253380
location: region:1-14253380:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14253380:1
position: 14253380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14253380:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8799866..8800065
location: region:8799866-8800065:1
BFO_0000051: feature:8799866-8800065:1:region
SIO_000974: f484966e-95fc-4b60-8795-e5d5227c3323

position:8799866:1
position: 8799866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8800065:1
position: 8800065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f484966e-95fc-4b60-8795-e5d5227c3323
SIO_000300: 1
SIO_000628: feature:8799866-8800065:1:region

Carterocephalus palaemon genome assembly, chromosome: 10.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 10.
sequence version: OX155647.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14089801
topology: linear
RO_0000086: SO_0000987
location: 1..14089801
location: region:1-14089801:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14089801:1
position: 14089801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14089801:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 10
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 11.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 11.
sequence version: OX155648.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13944154
topology: linear
RO_0000086: SO_0000987
location: 1..13944154
location: region:1-13944154:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13944154:1
position: 13944154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13944154:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13887015..13887214
location: region:13887015-13887214:1
BFO_0000051: feature:13887015-13887214:1:region
SIO_000974: 3d55cf51-c659-4fda-acac-339c3600fd92

position:13887015:1
position: 13887015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13887214:1
position: 13887214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d55cf51-c659-4fda-acac-339c3600fd92
SIO_000300: 1
SIO_000628: feature:13887015-13887214:1:region

Carterocephalus palaemon genome assembly, chromosome: 12.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 12.
sequence version: OX155649.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13897380
topology: linear
RO_0000086: SO_0000987
location: 1..13897380
location: region:1-13897380:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13897380:1
position: 13897380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13897380:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 12
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 13.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 13.
sequence version: OX155650.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13486662
topology: linear
RO_0000086: SO_0000987
location: 1..13486662
location: region:1-13486662:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13486662:1
position: 13486662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13486662:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 13
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 14.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 14.
sequence version: OX155651.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13350709
topology: linear
RO_0000086: SO_0000987
location: 1..13350709
location: region:1-13350709:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13350709:1
position: 13350709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13350709:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 14
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 15.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 15.
sequence version: OX155652.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13129920
topology: linear
RO_0000086: SO_0000987
location: 1..13129920
location: region:1-13129920:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13129920:1
position: 13129920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13129920:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 15
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 16.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 16.
sequence version: OX155653.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12920515
topology: linear
RO_0000086: SO_0000987
location: 1..12920515
location: region:1-12920515:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12920515:1
position: 12920515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12920515:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 16
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 17.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 17.
sequence version: OX155654.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12782883
topology: linear
RO_0000086: SO_0000987
location: 1..12782883
location: region:1-12782883:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12782883:1
position: 12782883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12782883:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 17
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 18.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 18.
sequence version: OX155655.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12714529
topology: linear
RO_0000086: SO_0000987
location: 1..12714529
location: region:1-12714529:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12714529:1
position: 12714529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12714529:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 18
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 19.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 19.
sequence version: OX155656.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11888421
topology: linear
RO_0000086: SO_0000987
location: 1..11888421
location: region:1-11888421:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11888421:1
position: 11888421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11888421:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 19
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 20.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 20.
sequence version: OX155657.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11362575
topology: linear
RO_0000086: SO_0000987
location: 1..11362575
location: region:1-11362575:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11362575:1
position: 11362575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11362575:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 20
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 21.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 21.
sequence version: OX155658.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11162929
topology: linear
RO_0000086: SO_0000987
location: 1..11162929
location: region:1-11162929:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11162929:1
position: 11162929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11162929:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 21
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 22.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 22.
sequence version: OX155659.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10319955
topology: linear
RO_0000086: SO_0000987
location: 1..10319955
location: region:1-10319955:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10319955:1
position: 10319955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10319955:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 22
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 23.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 23.
sequence version: OX155660.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10038484
topology: linear
RO_0000086: SO_0000987
location: 1..10038484
location: region:1-10038484:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10038484:1
position: 10038484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10038484:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 23
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 24.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 24.
sequence version: OX155661.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8107507
topology: linear
RO_0000086: SO_0000987
location: 1..8107507
location: region:1-8107507:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8107507:1
position: 8107507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8107507:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3515308..3515507
location: region:3515308-3515507:1
BFO_0000051: feature:3515308-3515507:1:region
SIO_000974: b3011bbd-c654-4fd1-9d65-be8c08841067

position:3515308:1
position: 3515308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3515507:1
position: 3515507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b3011bbd-c654-4fd1-9d65-be8c08841067
SIO_000300: 1
SIO_000628: feature:3515308-3515507:1:region

Carterocephalus palaemon genome assembly, chromosome: 25.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 25.
sequence version: OX155662.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9832842
topology: linear
RO_0000086: SO_0000987
location: 1..9832842
location: region:1-9832842:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9832842:1
position: 9832842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9832842:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9798476..9798675
location: region:9798476-9798675:1
BFO_0000051: feature:9798476-9798675:1:region
SIO_000974: 64c8592a-c3ca-452f-b000-9b9e8d1fc143

position:9798476:1
position: 9798476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9798675:1
position: 9798675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64c8592a-c3ca-452f-b000-9b9e8d1fc143
SIO_000300: 1
SIO_000628: feature:9798476-9798675:1:region

Carterocephalus palaemon genome assembly, chromosome: 26.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 26.
sequence version: OX155663.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9818507
topology: linear
RO_0000086: SO_0000987
location: 1..9818507
location: region:1-9818507:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9818507:1
position: 9818507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9818507:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 26
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 27.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 27.
sequence version: OX155664.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9164508
topology: linear
RO_0000086: SO_0000987
location: 1..9164508
location: region:1-9164508:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9164508:1
position: 9164508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9164508:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 27
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 28.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 28.
sequence version: OX155665.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8539557
topology: linear
RO_0000086: SO_0000987
location: 1..8539557
location: region:1-8539557:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8539557:1
position: 8539557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8539557:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1414711..1414910
location: region:1414711-1414910:1
BFO_0000051: feature:1414711-1414910:1:region
SIO_000974: ec4bc0e6-bb1e-450b-8eb4-694339e9351c

position:1414711:1
position: 1414711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1414910:1
position: 1414910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec4bc0e6-bb1e-450b-8eb4-694339e9351c
SIO_000300: 1
SIO_000628: feature:1414711-1414910:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1427704..1427903
location: region:1427704-1427903:1
BFO_0000051: feature:1427704-1427903:1:region
SIO_000974: 0c84b9ce-9ed8-4400-bfbc-d4d5f325e1ec

position:1427704:1
position: 1427704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427903:1
position: 1427903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c84b9ce-9ed8-4400-bfbc-d4d5f325e1ec
SIO_000300: 1
SIO_000628: feature:1427704-1427903:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7754423..7754622
location: region:7754423-7754622:1
BFO_0000051: feature:7754423-7754622:1:region
SIO_000974: dd1bbf71-b156-488e-b9a8-11fcf5909c27

position:7754423:1
position: 7754423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7754622:1
position: 7754622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd1bbf71-b156-488e-b9a8-11fcf5909c27
SIO_000300: 1
SIO_000628: feature:7754423-7754622:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8399238..8399437
location: region:8399238-8399437:1
BFO_0000051: feature:8399238-8399437:1:region
SIO_000974: be02c513-3d1f-4320-ba24-8a667047e28c

position:8399238:1
position: 8399238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8399437:1
position: 8399437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be02c513-3d1f-4320-ba24-8a667047e28c
SIO_000300: 1
SIO_000628: feature:8399238-8399437:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8430025..8430224
location: region:8430025-8430224:1
BFO_0000051: feature:8430025-8430224:1:region
SIO_000974: 0498cef8-f004-438f-ad80-e374ece9de00

position:8430025:1
position: 8430025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8430224:1
position: 8430224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0498cef8-f004-438f-ad80-e374ece9de00
SIO_000300: 1
SIO_000628: feature:8430025-8430224:1:region

Carterocephalus palaemon genome assembly, chromosome: 29.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 29.
sequence version: OX155666.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8312666
topology: linear
RO_0000086: SO_0000987
location: 1..8312666
location: region:1-8312666:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8312666:1
position: 8312666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8312666:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 29
mol type: genomic DNA

Carterocephalus palaemon genome assembly, chromosome: 30.
type: Entry
definition: Carterocephalus palaemon genome assembly, chromosome: 30.
sequence version: OX155667.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 7852722
topology: linear
RO_0000086: SO_0000987
location: 1..7852722
location: region:1-7852722:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7852722:1
position: 7852722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7852722:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1219143..1219342
location: region:1219143-1219342:1
BFO_0000051: feature:1219143-1219342:1:region
SIO_000974: 4f69e7f5-862f-43ee-8fb6-46b90961c18b

position:1219143:1
position: 1219143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1219342:1
position: 1219342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f69e7f5-862f-43ee-8fb6-46b90961c18b
SIO_000300: 1
SIO_000628: feature:1219143-1219342:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 218720
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1259586..1259785
location: region:1259586-1259785:1
BFO_0000051: feature:1259586-1259785:1:region
SIO_000974: f44ced69-ee03-43e9-9d8e-b95849824b5b

position:1259586:1
position: 1259586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1259785:1
position: 1259785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f44ced69-ee03-43e9-9d8e-b95849824b5b
SIO_000300: 1
SIO_000628: feature:1259586-1259785:1:region

Carterocephalus palaemon genome assembly, organelle: mitochondrion.
type: Entry
definition: Carterocephalus palaemon genome assembly, organelle: mitochondrion.
sequence version: OX155668.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: mitochondrion Carterocephalus palaemon (Arctic skipper)
organism: Carterocephalus palaemon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Heteropterinae; Carterocephalus.
reference: 1
comment: The assembly ilCarPala2.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15780
topology: linear
RO_0000086: SO_0000987
location: 1..15780
location: region:1-15780:1
RO_0002162: 218720

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15780:1
position: 15780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15780:1:source
BFO_0000050: sequence
organism: Carterocephalus palaemon
organelle: mitochondrion
mol type: genomic DNA

Eupithecia centaureata genome assembly, chromosome: Z.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: Z.
sequence version: OX155675.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21918189
topology: linear
RO_0000086: SO_0000987
location: 1..21918189
location: region:1-21918189:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21918189:1
position: 21918189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21918189:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: Z
mol type: genomic DNA

934844
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8800422..8800621
location: region:8800422-8800621:1
BFO_0000051: feature:8800422-8800621:1:region
SIO_000974: bfa1aecc-0255-4b0f-91fb-299ed318e897

position:8800422:1
position: 8800422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8800621:1
position: 8800621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bfa1aecc-0255-4b0f-91fb-299ed318e897
SIO_000300: 1
SIO_000628: feature:8800422-8800621:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20968947..20969146
location: region:20968947-20969146:1
BFO_0000051: feature:20968947-20969146:1:region
SIO_000974: 2bbb84c3-f90d-4319-9bdc-2d6fba8a57d2

position:20968947:1
position: 20968947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20969146:1
position: 20969146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2bbb84c3-f90d-4319-9bdc-2d6fba8a57d2
SIO_000300: 1
SIO_000628: feature:20968947-20969146:1:region

Eupithecia centaureata genome assembly, chromosome: 1.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 1.
sequence version: OX155676.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18434234
topology: linear
RO_0000086: SO_0000987
location: 1..18434234
location: region:1-18434234:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18434234:1
position: 18434234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18434234:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2250693..2250892
location: region:2250693-2250892:1
BFO_0000051: feature:2250693-2250892:1:region
SIO_000974: 87a4cd7d-bb4b-473b-ba97-12266863bbb5

position:2250693:1
position: 2250693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2250892:1
position: 2250892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

87a4cd7d-bb4b-473b-ba97-12266863bbb5
SIO_000300: 1
SIO_000628: feature:2250693-2250892:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2685326..2685525
location: region:2685326-2685525:1
BFO_0000051: feature:2685326-2685525:1:region
SIO_000974: ff7f218c-508f-42e0-bcf7-0f17407cc97b

position:2685326:1
position: 2685326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2685525:1
position: 2685525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff7f218c-508f-42e0-bcf7-0f17407cc97b
SIO_000300: 1
SIO_000628: feature:2685326-2685525:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3481404..3481603
location: region:3481404-3481603:1
BFO_0000051: feature:3481404-3481603:1:region
SIO_000974: 9037a893-6983-4b6c-af79-6746c2c774a7

position:3481404:1
position: 3481404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3481603:1
position: 3481603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9037a893-6983-4b6c-af79-6746c2c774a7
SIO_000300: 1
SIO_000628: feature:3481404-3481603:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4044279..4044478
location: region:4044279-4044478:1
BFO_0000051: feature:4044279-4044478:1:region
SIO_000974: e9df97d5-e9f6-4a8d-abdb-d862966bcb3c

position:4044279:1
position: 4044279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4044478:1
position: 4044478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9df97d5-e9f6-4a8d-abdb-d862966bcb3c
SIO_000300: 1
SIO_000628: feature:4044279-4044478:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4110383..4110582
location: region:4110383-4110582:1
BFO_0000051: feature:4110383-4110582:1:region
SIO_000974: 84816638-748d-473b-b397-2ac4ab68f07d

position:4110383:1
position: 4110383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4110582:1
position: 4110582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

84816638-748d-473b-b397-2ac4ab68f07d
SIO_000300: 1
SIO_000628: feature:4110383-4110582:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4434974..4435173
location: region:4434974-4435173:1
BFO_0000051: feature:4434974-4435173:1:region
SIO_000974: efd3207a-da49-4957-b5a6-ab2b2cef2f0e

position:4434974:1
position: 4434974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4435173:1
position: 4435173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efd3207a-da49-4957-b5a6-ab2b2cef2f0e
SIO_000300: 1
SIO_000628: feature:4434974-4435173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4941744..4941943
location: region:4941744-4941943:1
BFO_0000051: feature:4941744-4941943:1:region
SIO_000974: 37c62cad-c82a-4899-8c9b-15ae0c9c87f7

position:4941744:1
position: 4941744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4941943:1
position: 4941943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37c62cad-c82a-4899-8c9b-15ae0c9c87f7
SIO_000300: 1
SIO_000628: feature:4941744-4941943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6330531..6330730
location: region:6330531-6330730:1
BFO_0000051: feature:6330531-6330730:1:region
SIO_000974: 92045366-4ac7-42c3-bcd3-5a38618d27a5

position:6330531:1
position: 6330531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6330730:1
position: 6330730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92045366-4ac7-42c3-bcd3-5a38618d27a5
SIO_000300: 1
SIO_000628: feature:6330531-6330730:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6547735..6547934
location: region:6547735-6547934:1
BFO_0000051: feature:6547735-6547934:1:region
SIO_000974: a9beb553-be58-4003-93ef-31d3c9bdfd96

position:6547735:1
position: 6547735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6547934:1
position: 6547934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9beb553-be58-4003-93ef-31d3c9bdfd96
SIO_000300: 1
SIO_000628: feature:6547735-6547934:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9691611..9691810
location: region:9691611-9691810:1
BFO_0000051: feature:9691611-9691810:1:region
SIO_000974: 76d4a3aa-816f-44fb-92d7-c8ceda7aa7fc

position:9691611:1
position: 9691611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9691810:1
position: 9691810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76d4a3aa-816f-44fb-92d7-c8ceda7aa7fc
SIO_000300: 1
SIO_000628: feature:9691611-9691810:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10323446..10323645
location: region:10323446-10323645:1
BFO_0000051: feature:10323446-10323645:1:region
SIO_000974: b15741b4-21b6-43ef-ad6d-9c2ff0c99201

position:10323446:1
position: 10323446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10323645:1
position: 10323645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b15741b4-21b6-43ef-ad6d-9c2ff0c99201
SIO_000300: 1
SIO_000628: feature:10323446-10323645:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10375083..10375282
location: region:10375083-10375282:1
BFO_0000051: feature:10375083-10375282:1:region
SIO_000974: d8b6c05c-0193-4934-be33-439d7761bce7

position:10375083:1
position: 10375083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10375282:1
position: 10375282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8b6c05c-0193-4934-be33-439d7761bce7
SIO_000300: 1
SIO_000628: feature:10375083-10375282:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14305689..14305888
location: region:14305689-14305888:1
BFO_0000051: feature:14305689-14305888:1:region
SIO_000974: 96ebe42b-ed5c-4db9-b247-b4833af41e0d

position:14305689:1
position: 14305689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14305888:1
position: 14305888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

96ebe42b-ed5c-4db9-b247-b4833af41e0d
SIO_000300: 1
SIO_000628: feature:14305689-14305888:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14423262..14423461
location: region:14423262-14423461:1
BFO_0000051: feature:14423262-14423461:1:region
SIO_000974: b0d167bc-bc58-4b3c-b7e1-0d8951188a5b

position:14423262:1
position: 14423262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14423461:1
position: 14423461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0d167bc-bc58-4b3c-b7e1-0d8951188a5b
SIO_000300: 1
SIO_000628: feature:14423262-14423461:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15610369..15610568
location: region:15610369-15610568:1
BFO_0000051: feature:15610369-15610568:1:region
SIO_000974: 70584577-6881-47a0-bda8-4307783aaa7a

position:15610369:1
position: 15610369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15610568:1
position: 15610568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

70584577-6881-47a0-bda8-4307783aaa7a
SIO_000300: 1
SIO_000628: feature:15610369-15610568:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15906576..15906775
location: region:15906576-15906775:1
BFO_0000051: feature:15906576-15906775:1:region
SIO_000974: d8c063bf-908d-4ee7-b7ad-0f49bbde2ac8

position:15906576:1
position: 15906576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15906775:1
position: 15906775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8c063bf-908d-4ee7-b7ad-0f49bbde2ac8
SIO_000300: 1
SIO_000628: feature:15906576-15906775:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16217840..16218039
location: region:16217840-16218039:1
BFO_0000051: feature:16217840-16218039:1:region
SIO_000974: 7b610278-7bdf-4df0-8772-b466bc97f7be

position:16217840:1
position: 16217840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16218039:1
position: 16218039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b610278-7bdf-4df0-8772-b466bc97f7be
SIO_000300: 1
SIO_000628: feature:16217840-16218039:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17631040..17631239
location: region:17631040-17631239:1
BFO_0000051: feature:17631040-17631239:1:region
SIO_000974: d9675a1a-a1ae-47e4-b227-b0b987bfe204

position:17631040:1
position: 17631040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17631239:1
position: 17631239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9675a1a-a1ae-47e4-b227-b0b987bfe204
SIO_000300: 1
SIO_000628: feature:17631040-17631239:1:region

Eupithecia centaureata genome assembly, chromosome: 2.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 2.
sequence version: OX155677.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17858014
topology: linear
RO_0000086: SO_0000987
location: 1..17858014
location: region:1-17858014:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17858014:1
position: 17858014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17858014:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3139789..3139988
location: region:3139789-3139988:1
BFO_0000051: feature:3139789-3139988:1:region
SIO_000974: de6667bd-3963-4787-aff8-e1d0349443db

position:3139789:1
position: 3139789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3139988:1
position: 3139988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

de6667bd-3963-4787-aff8-e1d0349443db
SIO_000300: 1
SIO_000628: feature:3139789-3139988:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3829647..3829846
location: region:3829647-3829846:1
BFO_0000051: feature:3829647-3829846:1:region
SIO_000974: 616e42ff-e2ab-477d-a8dc-e3f7394bb43d

position:3829647:1
position: 3829647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3829846:1
position: 3829846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

616e42ff-e2ab-477d-a8dc-e3f7394bb43d
SIO_000300: 1
SIO_000628: feature:3829647-3829846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4921335..4921534
location: region:4921335-4921534:1
BFO_0000051: feature:4921335-4921534:1:region
SIO_000974: 2b717a40-f549-47a9-8193-1c08bcbbd006

position:4921335:1
position: 4921335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4921534:1
position: 4921534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4921335-4921534:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7504585..7504784
location: region:7504585-7504784:1
BFO_0000051: feature:7504585-7504784:1:region
SIO_000974: 152d8511-e948-4c58-a635-439b4e10b060

position:7504585:1
position: 7504585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7504784:1
position: 7504784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

152d8511-e948-4c58-a635-439b4e10b060
SIO_000300: 1
SIO_000628: feature:7504585-7504784:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9328278..9328477
location: region:9328278-9328477:1
BFO_0000051: feature:9328278-9328477:1:region
SIO_000974: a582ad51-4230-4c66-9451-8bf8438146c3

position:9328278:1
position: 9328278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9328477:1
position: 9328477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9328278-9328477:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9736657..9736856
location: region:9736657-9736856:1
BFO_0000051: feature:9736657-9736856:1:region
SIO_000974: 52d63cbb-a08f-4bd2-8f53-13f9284d1f20

position:9736657:1
position: 9736657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9736856:1
position: 9736856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52d63cbb-a08f-4bd2-8f53-13f9284d1f20
SIO_000300: 1
SIO_000628: feature:9736657-9736856:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12260184..12260383
location: region:12260184-12260383:1
BFO_0000051: feature:12260184-12260383:1:region
SIO_000974: 0f185032-367e-4e23-81b8-1a3840e8df37

position:12260184:1
position: 12260184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12260383:1
position: 12260383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12260184-12260383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12330535..12330734
location: region:12330535-12330734:1
BFO_0000051: feature:12330535-12330734:1:region
SIO_000974: e5b9f184-7786-4631-ab1d-bd0cf3f6bf1c

position:12330535:1
position: 12330535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12330734:1
position: 12330734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5b9f184-7786-4631-ab1d-bd0cf3f6bf1c
SIO_000300: 1
SIO_000628: feature:12330535-12330734:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12447289..12447488
location: region:12447289-12447488:1
BFO_0000051: feature:12447289-12447488:1:region
SIO_000974: 8685a208-ba5a-43b0-a968-35fec316ca61

position:12447289:1
position: 12447289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12447488:1
position: 12447488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8685a208-ba5a-43b0-a968-35fec316ca61
SIO_000300: 1
SIO_000628: feature:12447289-12447488:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12660291..12660490
location: region:12660291-12660490:1
BFO_0000051: feature:12660291-12660490:1:region
SIO_000974: 746003b2-08eb-4040-b6c8-06f1a551da9f

position:12660291:1
position: 12660291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12660490:1
position: 12660490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12660291-12660490:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13320785..13320984
location: region:13320785-13320984:1
BFO_0000051: feature:13320785-13320984:1:region
SIO_000974: 634827e9-4f22-4d2f-9eee-fef40f2a69d8

position:13320785:1
position: 13320785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13320984:1
position: 13320984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:13320785-13320984:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15145677..15145876
location: region:15145677-15145876:1
BFO_0000051: feature:15145677-15145876:1:region
SIO_000974: ab294716-a588-4107-a1f3-07c86f7b09f6

position:15145677:1
position: 15145677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15145876:1
position: 15145876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab294716-a588-4107-a1f3-07c86f7b09f6
SIO_000300: 1
SIO_000628: feature:15145677-15145876:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15984462..15984661
location: region:15984462-15984661:1
BFO_0000051: feature:15984462-15984661:1:region
SIO_000974: bf12d446-b64e-4a94-a13f-0c52d52653ca

position:15984462:1
position: 15984462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15984661:1
position: 15984661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bf12d446-b64e-4a94-a13f-0c52d52653ca
SIO_000300: 1
SIO_000628: feature:15984462-15984661:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16581815..16582014
location: region:16581815-16582014:1
BFO_0000051: feature:16581815-16582014:1:region
SIO_000974: 567bd068-bd97-42fe-8369-dc89bda66dfd

position:16581815:1
position: 16581815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16582014:1
position: 16582014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

567bd068-bd97-42fe-8369-dc89bda66dfd
SIO_000300: 1
SIO_000628: feature:16581815-16582014:1:region

Eupithecia centaureata genome assembly, chromosome: 3.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 3.
sequence version: OX155678.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17698660
topology: linear
RO_0000086: SO_0000987
location: 1..17698660
location: region:1-17698660:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17698660:1
position: 17698660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17698660:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 523852..524051
location: region:523852-524051:1
BFO_0000051: feature:523852-524051:1:region
SIO_000974: 55a767ca-389f-4bce-8914-6c238f8a6c0c

position:523852:1
position: 523852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524051:1
position: 524051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55a767ca-389f-4bce-8914-6c238f8a6c0c
SIO_000300: 1
SIO_000628: feature:523852-524051:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 936697..936896
location: region:936697-936896:1
BFO_0000051: feature:936697-936896:1:region
SIO_000974: 5b319b17-2bc8-4882-8d14-66b58d7c4d33

position:936697:1
position: 936697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:936896:1
position: 936896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:936697-936896:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2230808..2231007
location: region:2230808-2231007:1
BFO_0000051: feature:2230808-2231007:1:region
SIO_000974: 369bd308-8714-4357-b774-cd88afbb4dc9

position:2230808:1
position: 2230808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2231007:1
position: 2231007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

369bd308-8714-4357-b774-cd88afbb4dc9
SIO_000300: 1
SIO_000628: feature:2230808-2231007:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2575317..2575516
location: region:2575317-2575516:1
BFO_0000051: feature:2575317-2575516:1:region
SIO_000974: ba311f39-8b26-4938-823e-75a690c44942

position:2575317:1
position: 2575317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2575516:1
position: 2575516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba311f39-8b26-4938-823e-75a690c44942
SIO_000300: 1
SIO_000628: feature:2575317-2575516:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2987882..2988081
location: region:2987882-2988081:1
BFO_0000051: feature:2987882-2988081:1:region
SIO_000974: ecdc1930-5330-46dd-a994-2a863c1b1f5b

position:2987882:1
position: 2987882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2988081:1
position: 2988081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ecdc1930-5330-46dd-a994-2a863c1b1f5b
SIO_000300: 1
SIO_000628: feature:2987882-2988081:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3017953..3018152
location: region:3017953-3018152:1
BFO_0000051: feature:3017953-3018152:1:region
SIO_000974: a5d6c067-37b2-4be0-bf00-d99011500974

position:3017953:1
position: 3017953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3018152:1
position: 3018152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5d6c067-37b2-4be0-bf00-d99011500974
SIO_000300: 1
SIO_000628: feature:3017953-3018152:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3604744..3604943
location: region:3604744-3604943:1
BFO_0000051: feature:3604744-3604943:1:region
SIO_000974: 8002c99a-2729-4cc0-9719-166fc04a8f28

position:3604744:1
position: 3604744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3604943:1
position: 3604943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8002c99a-2729-4cc0-9719-166fc04a8f28
SIO_000300: 1
SIO_000628: feature:3604744-3604943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3963944..3964143
location: region:3963944-3964143:1
BFO_0000051: feature:3963944-3964143:1:region
SIO_000974: 9eb4f23e-6266-4bc9-aed1-a2d2eda3ba48

position:3963944:1
position: 3963944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3964143:1
position: 3964143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3963944-3964143:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4070258..4070457
location: region:4070258-4070457:1
BFO_0000051: feature:4070258-4070457:1:region
SIO_000974: 61f33d39-522a-42a7-8620-f2f3792eb16c

position:4070258:1
position: 4070258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4070457:1
position: 4070457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4070258-4070457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5057332..5057531
location: region:5057332-5057531:1
BFO_0000051: feature:5057332-5057531:1:region
SIO_000974: c2f7907b-3176-4cfa-aea9-ae18281d2b70

position:5057332:1
position: 5057332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5057531:1
position: 5057531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2f7907b-3176-4cfa-aea9-ae18281d2b70
SIO_000300: 1
SIO_000628: feature:5057332-5057531:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5258124..5258323
location: region:5258124-5258323:1
BFO_0000051: feature:5258124-5258323:1:region
SIO_000974: 0162033e-0423-4e79-be41-53494b5ae33b

position:5258124:1
position: 5258124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5258323:1
position: 5258323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0162033e-0423-4e79-be41-53494b5ae33b
SIO_000300: 1
SIO_000628: feature:5258124-5258323:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6740991..6741190
location: region:6740991-6741190:1
BFO_0000051: feature:6740991-6741190:1:region
SIO_000974: c445b972-2670-41de-9165-89267af5837e

position:6740991:1
position: 6740991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6741190:1
position: 6741190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c445b972-2670-41de-9165-89267af5837e
SIO_000300: 1
SIO_000628: feature:6740991-6741190:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8355710..8355909
location: region:8355710-8355909:1
BFO_0000051: feature:8355710-8355909:1:region
SIO_000974: 1aabd937-18aa-4eee-a031-53660699354e

position:8355710:1
position: 8355710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8355909:1
position: 8355909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1aabd937-18aa-4eee-a031-53660699354e
SIO_000300: 1
SIO_000628: feature:8355710-8355909:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9032466..9032665
location: region:9032466-9032665:1
BFO_0000051: feature:9032466-9032665:1:region
SIO_000974: 9b0d757d-5f19-4a7b-8b4c-2b40906448a6

position:9032466:1
position: 9032466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9032665:1
position: 9032665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b0d757d-5f19-4a7b-8b4c-2b40906448a6
SIO_000300: 1
SIO_000628: feature:9032466-9032665:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9393914..9394113
location: region:9393914-9394113:1
BFO_0000051: feature:9393914-9394113:1:region
SIO_000974: e07f473c-3925-4b0d-9379-7ee835c3a8b8

position:9393914:1
position: 9393914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394113:1
position: 9394113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e07f473c-3925-4b0d-9379-7ee835c3a8b8
SIO_000300: 1
SIO_000628: feature:9393914-9394113:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9616566..9616765
location: region:9616566-9616765:1
BFO_0000051: feature:9616566-9616765:1:region
SIO_000974: 35fae223-da79-44b2-8f1a-7dc6f65ec4b7

position:9616566:1
position: 9616566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9616765:1
position: 9616765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35fae223-da79-44b2-8f1a-7dc6f65ec4b7
SIO_000300: 1
SIO_000628: feature:9616566-9616765:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9637071..9637270
location: region:9637071-9637270:1
BFO_0000051: feature:9637071-9637270:1:region
SIO_000974: 6bff7398-019b-462c-971e-25a8182023a1

position:9637071:1
position: 9637071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9637270:1
position: 9637270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bff7398-019b-462c-971e-25a8182023a1
SIO_000300: 1
SIO_000628: feature:9637071-9637270:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11168271..11168470
location: region:11168271-11168470:1
BFO_0000051: feature:11168271-11168470:1:region
SIO_000974: def61fb6-90c2-4d6d-be1a-dcba547a249a

position:11168271:1
position: 11168271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11168470:1
position: 11168470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

def61fb6-90c2-4d6d-be1a-dcba547a249a
SIO_000300: 1
SIO_000628: feature:11168271-11168470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11754471..11754670
location: region:11754471-11754670:1
BFO_0000051: feature:11754471-11754670:1:region
SIO_000974: 8dcb4723-bd4e-4c05-890a-9e7f08f50cd5

position:11754471:1
position: 11754471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11754670:1
position: 11754670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8dcb4723-bd4e-4c05-890a-9e7f08f50cd5
SIO_000300: 1
SIO_000628: feature:11754471-11754670:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13307689..13307888
location: region:13307689-13307888:1
BFO_0000051: feature:13307689-13307888:1:region
SIO_000974: e94725b4-f95b-407f-91ca-e7367b4c4ee7

position:13307689:1
position: 13307689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13307888:1
position: 13307888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e94725b4-f95b-407f-91ca-e7367b4c4ee7
SIO_000300: 1
SIO_000628: feature:13307689-13307888:1:region

Eupithecia centaureata genome assembly, chromosome: 4.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 4.
sequence version: OX155679.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17566564
topology: linear
RO_0000086: SO_0000987
location: 1..17566564
location: region:1-17566564:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17566564:1
position: 17566564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17566564:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 80918..81117
location: region:80918-81117:1
BFO_0000051: feature:80918-81117:1:region
SIO_000974: 575cb0f3-4b4b-41d2-b401-a23556470ab7

position:80918:1
position: 80918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81117:1
position: 81117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

575cb0f3-4b4b-41d2-b401-a23556470ab7
SIO_000300: 1
SIO_000628: feature:80918-81117:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 277118..277317
location: region:277118-277317:1
BFO_0000051: feature:277118-277317:1:region
SIO_000974: bc4ccb58-b0ab-4040-9236-8cd7236f2663

position:277118:1
position: 277118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:277317:1
position: 277317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc4ccb58-b0ab-4040-9236-8cd7236f2663
SIO_000300: 1
SIO_000628: feature:277118-277317:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1146157..1146356
location: region:1146157-1146356:1
BFO_0000051: feature:1146157-1146356:1:region
SIO_000974: d9c618a4-5d6c-4bac-8135-32c4eb44a4bc

position:1146157:1
position: 1146157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1146356:1
position: 1146356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9c618a4-5d6c-4bac-8135-32c4eb44a4bc
SIO_000300: 1
SIO_000628: feature:1146157-1146356:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1338298..1338497
location: region:1338298-1338497:1
BFO_0000051: feature:1338298-1338497:1:region
SIO_000974: 317ef322-5db3-4efd-8d0e-3213fdc4593a

position:1338298:1
position: 1338298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1338497:1
position: 1338497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

317ef322-5db3-4efd-8d0e-3213fdc4593a
SIO_000300: 1
SIO_000628: feature:1338298-1338497:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1674037..1674236
location: region:1674037-1674236:1
BFO_0000051: feature:1674037-1674236:1:region
SIO_000974: f0daba3b-e334-43df-8cc1-3ebd5a935493

position:1674037:1
position: 1674037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1674236:1
position: 1674236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0daba3b-e334-43df-8cc1-3ebd5a935493
SIO_000300: 1
SIO_000628: feature:1674037-1674236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3464957..3465156
location: region:3464957-3465156:1
BFO_0000051: feature:3464957-3465156:1:region
SIO_000974: 3e434556-89d7-4907-8c29-ad3d6c926e26

position:3464957:1
position: 3464957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3465156:1
position: 3465156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e434556-89d7-4907-8c29-ad3d6c926e26
SIO_000300: 1
SIO_000628: feature:3464957-3465156:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7673569..7673768
location: region:7673569-7673768:1
BFO_0000051: feature:7673569-7673768:1:region
SIO_000974: 95f52881-bf00-4df5-9fe4-ad55b29d32b7

position:7673569:1
position: 7673569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7673768:1
position: 7673768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95f52881-bf00-4df5-9fe4-ad55b29d32b7
SIO_000300: 1
SIO_000628: feature:7673569-7673768:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7789938..7790137
location: region:7789938-7790137:1
BFO_0000051: feature:7789938-7790137:1:region
SIO_000974: 5267c363-66fa-494c-b8d3-9fd3923ebe5b

position:7789938:1
position: 7789938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7790137:1
position: 7790137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5267c363-66fa-494c-b8d3-9fd3923ebe5b
SIO_000300: 1
SIO_000628: feature:7789938-7790137:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11497758..11497957
location: region:11497758-11497957:1
BFO_0000051: feature:11497758-11497957:1:region
SIO_000974: b334ae8a-c695-4d89-bf09-dd04b3b54c47

position:11497758:1
position: 11497758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11497957:1
position: 11497957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b334ae8a-c695-4d89-bf09-dd04b3b54c47
SIO_000300: 1
SIO_000628: feature:11497758-11497957:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14101958..14102157
location: region:14101958-14102157:1
BFO_0000051: feature:14101958-14102157:1:region
SIO_000974: 6b202752-7893-40a6-8cab-1d13c0b35c84

position:14101958:1
position: 14101958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14102157:1
position: 14102157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b202752-7893-40a6-8cab-1d13c0b35c84
SIO_000300: 1
SIO_000628: feature:14101958-14102157:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14899246..14899445
location: region:14899246-14899445:1
BFO_0000051: feature:14899246-14899445:1:region
SIO_000974: e4e0a0c0-fc28-4d8c-814e-2c07818547d9

position:14899246:1
position: 14899246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14899445:1
position: 14899445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4e0a0c0-fc28-4d8c-814e-2c07818547d9
SIO_000300: 1
SIO_000628: feature:14899246-14899445:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15020114..15020313
location: region:15020114-15020313:1
BFO_0000051: feature:15020114-15020313:1:region
SIO_000974: bd4a91f7-cc50-46b8-87c7-384d9b61255a

position:15020114:1
position: 15020114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15020313:1
position: 15020313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd4a91f7-cc50-46b8-87c7-384d9b61255a
SIO_000300: 1
SIO_000628: feature:15020114-15020313:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15764613..15764812
location: region:15764613-15764812:1
BFO_0000051: feature:15764613-15764812:1:region
SIO_000974: d7393b60-02a8-458f-a9e7-fa7b6c9daea2

position:15764613:1
position: 15764613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15764812:1
position: 15764812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7393b60-02a8-458f-a9e7-fa7b6c9daea2
SIO_000300: 1
SIO_000628: feature:15764613-15764812:1:region

Eupithecia centaureata genome assembly, chromosome: 5.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 5.
sequence version: OX155680.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16653735
topology: linear
RO_0000086: SO_0000987
location: 1..16653735
location: region:1-16653735:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16653735:1
position: 16653735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16653735:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 279001..279200
location: region:279001-279200:1
BFO_0000051: feature:279001-279200:1:region
SIO_000974: 05df30ed-90c2-44b3-bb53-c98c3d44b709

position:279001:1
position: 279001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:279200:1
position: 279200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05df30ed-90c2-44b3-bb53-c98c3d44b709
SIO_000300: 1
SIO_000628: feature:279001-279200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 829279..829478
location: region:829279-829478:1
BFO_0000051: feature:829279-829478:1:region
SIO_000974: d3483a78-b71b-4eb6-916b-114e415efaac

position:829279:1
position: 829279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:829478:1
position: 829478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d3483a78-b71b-4eb6-916b-114e415efaac
SIO_000300: 1
SIO_000628: feature:829279-829478:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1123493..1123692
location: region:1123493-1123692:1
BFO_0000051: feature:1123493-1123692:1:region
SIO_000974: 1d0fd393-9888-4f54-9840-5db91638db10

position:1123493:1
position: 1123493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1123692:1
position: 1123692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d0fd393-9888-4f54-9840-5db91638db10
SIO_000300: 1
SIO_000628: feature:1123493-1123692:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1361693..1361892
location: region:1361693-1361892:1
BFO_0000051: feature:1361693-1361892:1:region
SIO_000974: 7224e9cf-6ec3-4a88-b289-dfd30d5d1ee6

position:1361693:1
position: 1361693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1361892:1
position: 1361892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7224e9cf-6ec3-4a88-b289-dfd30d5d1ee6
SIO_000300: 1
SIO_000628: feature:1361693-1361892:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1975692..1975891
location: region:1975692-1975891:1
BFO_0000051: feature:1975692-1975891:1:region
SIO_000974: 6bd5c7c7-743a-4f6a-9c15-563947731f60

position:1975692:1
position: 1975692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1975891:1
position: 1975891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bd5c7c7-743a-4f6a-9c15-563947731f60
SIO_000300: 1
SIO_000628: feature:1975692-1975891:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2784810..2785009
location: region:2784810-2785009:1
BFO_0000051: feature:2784810-2785009:1:region
SIO_000974: d39ebd52-1bf0-4b5a-b57a-4933a812536f

position:2784810:1
position: 2784810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2785009:1
position: 2785009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d39ebd52-1bf0-4b5a-b57a-4933a812536f
SIO_000300: 1
SIO_000628: feature:2784810-2785009:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4183921..4184120
location: region:4183921-4184120:1
BFO_0000051: feature:4183921-4184120:1:region
SIO_000974: dd3f3c56-bab9-4d58-bf6e-22fcd30a6d40

position:4183921:1
position: 4183921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4184120:1
position: 4184120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd3f3c56-bab9-4d58-bf6e-22fcd30a6d40
SIO_000300: 1
SIO_000628: feature:4183921-4184120:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4613961..4614160
location: region:4613961-4614160:1
BFO_0000051: feature:4613961-4614160:1:region
SIO_000974: cbd299a0-b44d-434d-aaf9-436f5a8bd8f1

position:4613961:1
position: 4613961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4614160:1
position: 4614160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cbd299a0-b44d-434d-aaf9-436f5a8bd8f1
SIO_000300: 1
SIO_000628: feature:4613961-4614160:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5820391..5820590
location: region:5820391-5820590:1
BFO_0000051: feature:5820391-5820590:1:region
SIO_000974: 9f4348ac-b237-4241-96ae-e3058c3f99ec

position:5820391:1
position: 5820391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5820590:1
position: 5820590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f4348ac-b237-4241-96ae-e3058c3f99ec
SIO_000300: 1
SIO_000628: feature:5820391-5820590:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6340712..6340911
location: region:6340712-6340911:1
BFO_0000051: feature:6340712-6340911:1:region
SIO_000974: 5f30d1fb-654c-4143-b308-d17a9a3be781

position:6340712:1
position: 6340712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6340911:1
position: 6340911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f30d1fb-654c-4143-b308-d17a9a3be781
SIO_000300: 1
SIO_000628: feature:6340712-6340911:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7430587..7430786
location: region:7430587-7430786:1
BFO_0000051: feature:7430587-7430786:1:region
SIO_000974: e144a540-678f-44b2-babe-17ef54242266

position:7430587:1
position: 7430587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7430786:1
position: 7430786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e144a540-678f-44b2-babe-17ef54242266
SIO_000300: 1
SIO_000628: feature:7430587-7430786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12846592..12846791
location: region:12846592-12846791:1
BFO_0000051: feature:12846592-12846791:1:region
SIO_000974: e7ed9f13-2e94-4c7d-9033-963588b5c536

position:12846592:1
position: 12846592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12846791:1
position: 12846791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e7ed9f13-2e94-4c7d-9033-963588b5c536
SIO_000300: 1
SIO_000628: feature:12846592-12846791:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13550371..13550570
location: region:13550371-13550570:1
BFO_0000051: feature:13550371-13550570:1:region
SIO_000974: 7be5e4fe-72df-405c-bd19-438339357b6c

position:13550371:1
position: 13550371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13550570:1
position: 13550570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7be5e4fe-72df-405c-bd19-438339357b6c
SIO_000300: 1
SIO_000628: feature:13550371-13550570:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13822475..13822674
location: region:13822475-13822674:1
BFO_0000051: feature:13822475-13822674:1:region
SIO_000974: 3707d87d-c6f3-4b36-a4db-683c5d671b32

position:13822475:1
position: 13822475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13822674:1
position: 13822674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3707d87d-c6f3-4b36-a4db-683c5d671b32
SIO_000300: 1
SIO_000628: feature:13822475-13822674:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13883796..13883995
location: region:13883796-13883995:1
BFO_0000051: feature:13883796-13883995:1:region
SIO_000974: 662b1f54-b3b1-4a1a-a5a8-b0954596e0b4

position:13883796:1
position: 13883796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13883995:1
position: 13883995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

662b1f54-b3b1-4a1a-a5a8-b0954596e0b4
SIO_000300: 1
SIO_000628: feature:13883796-13883995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15614028..15614227
location: region:15614028-15614227:1
BFO_0000051: feature:15614028-15614227:1:region
SIO_000974: f8238481-ee43-4733-8fb3-9a5df6243459

position:15614028:1
position: 15614028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15614227:1
position: 15614227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f8238481-ee43-4733-8fb3-9a5df6243459
SIO_000300: 1
SIO_000628: feature:15614028-15614227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15814668..15814867
location: region:15814668-15814867:1
BFO_0000051: feature:15814668-15814867:1:region
SIO_000974: 8f7c9f69-2261-41f4-abb4-cfe01305d37f

position:15814668:1
position: 15814668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15814867:1
position: 15814867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8f7c9f69-2261-41f4-abb4-cfe01305d37f
SIO_000300: 1
SIO_000628: feature:15814668-15814867:1:region

Eupithecia centaureata genome assembly, chromosome: 6.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 6.
sequence version: OX155681.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16179015
topology: linear
RO_0000086: SO_0000987
location: 1..16179015
location: region:1-16179015:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16179015:1
position: 16179015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16179015:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2061001..2061200
location: region:2061001-2061200:1
BFO_0000051: feature:2061001-2061200:1:region
SIO_000974: 3b7290a1-eee2-41aa-abf4-6ef65e0c648d

position:2061001:1
position: 2061001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2061200:1
position: 2061200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b7290a1-eee2-41aa-abf4-6ef65e0c648d
SIO_000300: 1
SIO_000628: feature:2061001-2061200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3968174..3968373
location: region:3968174-3968373:1
BFO_0000051: feature:3968174-3968373:1:region
SIO_000974: b307fa4b-9cbd-4b6f-b86a-72fb6ff2ec42

position:3968174:1
position: 3968174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3968373:1
position: 3968373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b307fa4b-9cbd-4b6f-b86a-72fb6ff2ec42
SIO_000300: 1
SIO_000628: feature:3968174-3968373:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4012361..4012560
location: region:4012361-4012560:1
BFO_0000051: feature:4012361-4012560:1:region
SIO_000974: cee58b72-28b6-4c5d-9c33-73f86fd53bcc

position:4012361:1
position: 4012361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4012560:1
position: 4012560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cee58b72-28b6-4c5d-9c33-73f86fd53bcc
SIO_000300: 1
SIO_000628: feature:4012361-4012560:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4229037..4229236
location: region:4229037-4229236:1
BFO_0000051: feature:4229037-4229236:1:region
SIO_000974: 401048d4-4155-4c77-9297-07c13e9427b4

position:4229037:1
position: 4229037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4229236:1
position: 4229236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

401048d4-4155-4c77-9297-07c13e9427b4
SIO_000300: 1
SIO_000628: feature:4229037-4229236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4262888..4263087
location: region:4262888-4263087:1
BFO_0000051: feature:4262888-4263087:1:region
SIO_000974: 15035291-1c35-4810-bf96-d50361176d05

position:4262888:1
position: 4262888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4263087:1
position: 4263087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

15035291-1c35-4810-bf96-d50361176d05
SIO_000300: 1
SIO_000628: feature:4262888-4263087:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4395144..4395343
location: region:4395144-4395343:1
BFO_0000051: feature:4395144-4395343:1:region
SIO_000974: 8e862e2b-20f2-42cc-a367-4990518f6197

position:4395144:1
position: 4395144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4395343:1
position: 4395343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e862e2b-20f2-42cc-a367-4990518f6197
SIO_000300: 1
SIO_000628: feature:4395144-4395343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5627666..5627865
location: region:5627666-5627865:1
BFO_0000051: feature:5627666-5627865:1:region
SIO_000974: c665919c-4e4c-4a1e-841a-3d5f33db7830

position:5627666:1
position: 5627666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5627865:1
position: 5627865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c665919c-4e4c-4a1e-841a-3d5f33db7830
SIO_000300: 1
SIO_000628: feature:5627666-5627865:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5725656..5725855
location: region:5725656-5725855:1
BFO_0000051: feature:5725656-5725855:1:region
SIO_000974: 550e4f2c-c5b4-413b-b439-53369a811ea7

position:5725656:1
position: 5725656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5725855:1
position: 5725855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

550e4f2c-c5b4-413b-b439-53369a811ea7
SIO_000300: 1
SIO_000628: feature:5725656-5725855:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7076526..7076725
location: region:7076526-7076725:1
BFO_0000051: feature:7076526-7076725:1:region
SIO_000974: b4f932e5-26e9-4e29-88fe-1bed65fa96f0

position:7076526:1
position: 7076526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7076725:1
position: 7076725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4f932e5-26e9-4e29-88fe-1bed65fa96f0
SIO_000300: 1
SIO_000628: feature:7076526-7076725:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10268214..10268413
location: region:10268214-10268413:1
BFO_0000051: feature:10268214-10268413:1:region
SIO_000974: ef83bc4a-a0c6-48cf-85a7-d90da544ee35

position:10268214:1
position: 10268214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10268413:1
position: 10268413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ef83bc4a-a0c6-48cf-85a7-d90da544ee35
SIO_000300: 1
SIO_000628: feature:10268214-10268413:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10761992..10762191
location: region:10761992-10762191:1
BFO_0000051: feature:10761992-10762191:1:region
SIO_000974: d4e74d67-dc57-4ad5-b262-54edd5219a71

position:10761992:1
position: 10761992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10762191:1
position: 10762191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d4e74d67-dc57-4ad5-b262-54edd5219a71
SIO_000300: 1
SIO_000628: feature:10761992-10762191:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12340796..12340995
location: region:12340796-12340995:1
BFO_0000051: feature:12340796-12340995:1:region
SIO_000974: f63b8ace-e62a-4642-af9a-42fac6f2c602

position:12340796:1
position: 12340796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12340995:1
position: 12340995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f63b8ace-e62a-4642-af9a-42fac6f2c602
SIO_000300: 1
SIO_000628: feature:12340796-12340995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13265560..13265759
location: region:13265560-13265759:1
BFO_0000051: feature:13265560-13265759:1:region
SIO_000974: 44aed67e-0ba1-4203-aca6-34c72953a8d6

position:13265560:1
position: 13265560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13265759:1
position: 13265759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44aed67e-0ba1-4203-aca6-34c72953a8d6
SIO_000300: 1
SIO_000628: feature:13265560-13265759:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13469809..13470008
location: region:13469809-13470008:1
BFO_0000051: feature:13469809-13470008:1:region
SIO_000974: ff5683d3-724e-4eb9-ab6a-ac5191fd390a

position:13469809:1
position: 13469809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13470008:1
position: 13470008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff5683d3-724e-4eb9-ab6a-ac5191fd390a
SIO_000300: 1
SIO_000628: feature:13469809-13470008:1:region

Eupithecia centaureata genome assembly, chromosome: 7.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 7.
sequence version: OX155682.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16079496
topology: linear
RO_0000086: SO_0000987
location: 1..16079496
location: region:1-16079496:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16079496:1
position: 16079496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16079496:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2705122..2705321
location: region:2705122-2705321:1
BFO_0000051: feature:2705122-2705321:1:region
SIO_000974: 898bc6d5-4b92-49aa-b6af-4ee582892774

position:2705122:1
position: 2705122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2705321:1
position: 2705321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

898bc6d5-4b92-49aa-b6af-4ee582892774
SIO_000300: 1
SIO_000628: feature:2705122-2705321:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3361985..3362184
location: region:3361985-3362184:1
BFO_0000051: feature:3361985-3362184:1:region
SIO_000974: 8e050240-7e6a-4211-a196-0e700eee86dd

position:3361985:1
position: 3361985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3362184:1
position: 3362184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e050240-7e6a-4211-a196-0e700eee86dd
SIO_000300: 1
SIO_000628: feature:3361985-3362184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10707533..10707732
location: region:10707533-10707732:1
BFO_0000051: feature:10707533-10707732:1:region
SIO_000974: c9f98761-e538-4c09-816b-a6c3a8aea9f6

position:10707533:1
position: 10707533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10707732:1
position: 10707732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9f98761-e538-4c09-816b-a6c3a8aea9f6
SIO_000300: 1
SIO_000628: feature:10707533-10707732:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11780308..11780507
location: region:11780308-11780507:1
BFO_0000051: feature:11780308-11780507:1:region
SIO_000974: 8a9133f8-449d-48f0-b884-6978609a7eb1

position:11780308:1
position: 11780308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11780507:1
position: 11780507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a9133f8-449d-48f0-b884-6978609a7eb1
SIO_000300: 1
SIO_000628: feature:11780308-11780507:1:region

Eupithecia centaureata genome assembly, chromosome: 8.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 8.
sequence version: OX155683.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15933006
topology: linear
RO_0000086: SO_0000987
location: 1..15933006
location: region:1-15933006:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15933006:1
position: 15933006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15933006:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 581001..581200
location: region:581001-581200:1
BFO_0000051: feature:581001-581200:1:region
SIO_000974: 5ee0502b-24e8-4ffe-9996-5882b432eeb7

position:581001:1
position: 581001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:581200:1
position: 581200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ee0502b-24e8-4ffe-9996-5882b432eeb7
SIO_000300: 1
SIO_000628: feature:581001-581200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1418201..1418400
location: region:1418201-1418400:1
BFO_0000051: feature:1418201-1418400:1:region
SIO_000974: ad94d8ad-1a3d-46ed-b271-b72db8bab1fb

position:1418201:1
position: 1418201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1418400:1
position: 1418400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad94d8ad-1a3d-46ed-b271-b72db8bab1fb
SIO_000300: 1
SIO_000628: feature:1418201-1418400:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3167070..3167269
location: region:3167070-3167269:1
BFO_0000051: feature:3167070-3167269:1:region
SIO_000974: 270877f6-02dd-4135-b70e-9efe72c9bcab

position:3167070:1
position: 3167070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3167269:1
position: 3167269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

270877f6-02dd-4135-b70e-9efe72c9bcab
SIO_000300: 1
SIO_000628: feature:3167070-3167269:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6498270..6498469
location: region:6498270-6498469:1
BFO_0000051: feature:6498270-6498469:1:region
SIO_000974: 7ed1c601-d3b9-4042-b35a-7b00b18cc52c

position:6498270:1
position: 6498270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6498469:1
position: 6498469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ed1c601-d3b9-4042-b35a-7b00b18cc52c
SIO_000300: 1
SIO_000628: feature:6498270-6498469:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7380643..7380842
location: region:7380643-7380842:1
BFO_0000051: feature:7380643-7380842:1:region
SIO_000974: ff228d82-3c90-4110-9521-dc8710fb6c96

position:7380643:1
position: 7380643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7380842:1
position: 7380842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff228d82-3c90-4110-9521-dc8710fb6c96
SIO_000300: 1
SIO_000628: feature:7380643-7380842:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9757991..9758190
location: region:9757991-9758190:1
BFO_0000051: feature:9757991-9758190:1:region
SIO_000974: 716d8dd1-7fce-4dd5-9b6a-cd55c890e1ed

position:9757991:1
position: 9757991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9758190:1
position: 9758190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

716d8dd1-7fce-4dd5-9b6a-cd55c890e1ed
SIO_000300: 1
SIO_000628: feature:9757991-9758190:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13531199..13531398
location: region:13531199-13531398:1
BFO_0000051: feature:13531199-13531398:1:region
SIO_000974: d2706546-9bf7-44b4-8203-b5926c52d7aa

position:13531199:1
position: 13531199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13531398:1
position: 13531398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d2706546-9bf7-44b4-8203-b5926c52d7aa
SIO_000300: 1
SIO_000628: feature:13531199-13531398:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13664595..13664794
location: region:13664595-13664794:1
BFO_0000051: feature:13664595-13664794:1:region
SIO_000974: 0078367c-3135-45fa-95f6-2ee8455ebed9

position:13664595:1
position: 13664595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13664794:1
position: 13664794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:13664595-13664794:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14173243..14173442
location: region:14173243-14173442:1
BFO_0000051: feature:14173243-14173442:1:region
SIO_000974: 673e490c-637a-4f55-94bf-b3f9535279f0

position:14173243:1
position: 14173243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14173442:1
position: 14173442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

673e490c-637a-4f55-94bf-b3f9535279f0
SIO_000300: 1
SIO_000628: feature:14173243-14173442:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14381001..14381200
location: region:14381001-14381200:1
BFO_0000051: feature:14381001-14381200:1:region
SIO_000974: e319c4c6-23af-466a-98ef-2cbd5ba772dc

position:14381001:1
position: 14381001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14381200:1
position: 14381200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e319c4c6-23af-466a-98ef-2cbd5ba772dc
SIO_000300: 1
SIO_000628: feature:14381001-14381200:1:region

Eupithecia centaureata genome assembly, chromosome: 9.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 9.
sequence version: OX155684.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15561483
topology: linear
RO_0000086: SO_0000987
location: 1..15561483
location: region:1-15561483:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15561483:1
position: 15561483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15561483:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 658001..658200
location: region:658001-658200:1
BFO_0000051: feature:658001-658200:1:region
SIO_000974: a97af410-e38a-414b-8e4a-5590ba5e7d1b

position:658001:1
position: 658001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658200:1
position: 658200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a97af410-e38a-414b-8e4a-5590ba5e7d1b
SIO_000300: 1
SIO_000628: feature:658001-658200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3075077..3075276
location: region:3075077-3075276:1
BFO_0000051: feature:3075077-3075276:1:region
SIO_000974: 53265e20-fcda-4647-8dec-8a32eea3214f

position:3075077:1
position: 3075077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3075276:1
position: 3075276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53265e20-fcda-4647-8dec-8a32eea3214f
SIO_000300: 1
SIO_000628: feature:3075077-3075276:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3435877..3436076
location: region:3435877-3436076:1
BFO_0000051: feature:3435877-3436076:1:region
SIO_000974: a28d6af8-3fb6-4ff7-8637-2a7e2350e1f3

position:3435877:1
position: 3435877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3436076:1
position: 3436076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a28d6af8-3fb6-4ff7-8637-2a7e2350e1f3
SIO_000300: 1
SIO_000628: feature:3435877-3436076:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4566459..4566658
location: region:4566459-4566658:1
BFO_0000051: feature:4566459-4566658:1:region
SIO_000974: 0355ee34-232c-476b-824e-65762a43149c

position:4566459:1
position: 4566459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4566658:1
position: 4566658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0355ee34-232c-476b-824e-65762a43149c
SIO_000300: 1
SIO_000628: feature:4566459-4566658:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4813027..4813226
location: region:4813027-4813226:1
BFO_0000051: feature:4813027-4813226:1:region
SIO_000974: e8d18e26-7696-45a2-9d38-ce2721638796

position:4813027:1
position: 4813027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4813226:1
position: 4813226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8d18e26-7696-45a2-9d38-ce2721638796
SIO_000300: 1
SIO_000628: feature:4813027-4813226:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5682742..5682941
location: region:5682742-5682941:1
BFO_0000051: feature:5682742-5682941:1:region
SIO_000974: 272b027a-4aad-45f1-b2bd-61b4189aed87

position:5682742:1
position: 5682742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5682941:1
position: 5682941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

272b027a-4aad-45f1-b2bd-61b4189aed87
SIO_000300: 1
SIO_000628: feature:5682742-5682941:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5879236..5879435
location: region:5879236-5879435:1
BFO_0000051: feature:5879236-5879435:1:region
SIO_000974: 2fce523a-3fc0-469e-b60b-151baf445c31

position:5879236:1
position: 5879236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5879435:1
position: 5879435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2fce523a-3fc0-469e-b60b-151baf445c31
SIO_000300: 1
SIO_000628: feature:5879236-5879435:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6544373..6544572
location: region:6544373-6544572:1
BFO_0000051: feature:6544373-6544572:1:region
SIO_000974: 12593da8-b4f1-480d-9a76-05e93c96325f

position:6544373:1
position: 6544373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6544572:1
position: 6544572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6544373-6544572:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6641341..6641540
location: region:6641341-6641540:1
BFO_0000051: feature:6641341-6641540:1:region
SIO_000974: 7aec03c1-81f5-4e8b-ab71-44eb46257037

position:6641341:1
position: 6641341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6641540:1
position: 6641540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6641341-6641540:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6869854..6870053
location: region:6869854-6870053:1
BFO_0000051: feature:6869854-6870053:1:region
SIO_000974: fb254be5-0611-4951-8d90-04c097dc63d2

position:6869854:1
position: 6869854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6870053:1
position: 6870053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fb254be5-0611-4951-8d90-04c097dc63d2
SIO_000300: 1
SIO_000628: feature:6869854-6870053:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9842755..9842954
location: region:9842755-9842954:1
BFO_0000051: feature:9842755-9842954:1:region
SIO_000974: 124bd9fd-4cda-40c3-9ec3-9ecd8a8f57a6

position:9842755:1
position: 9842755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9842954:1
position: 9842954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

124bd9fd-4cda-40c3-9ec3-9ecd8a8f57a6
SIO_000300: 1
SIO_000628: feature:9842755-9842954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10601097..10601296
location: region:10601097-10601296:1
BFO_0000051: feature:10601097-10601296:1:region
SIO_000974: e6d9c11f-b218-4b23-901d-4a5f484a6330

position:10601097:1
position: 10601097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10601296:1
position: 10601296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6d9c11f-b218-4b23-901d-4a5f484a6330
SIO_000300: 1
SIO_000628: feature:10601097-10601296:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10883400..10883599
location: region:10883400-10883599:1
BFO_0000051: feature:10883400-10883599:1:region
SIO_000974: 2410d897-3aab-4b99-b210-bc15b36f98cd

position:10883400:1
position: 10883400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10883599:1
position: 10883599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2410d897-3aab-4b99-b210-bc15b36f98cd
SIO_000300: 1
SIO_000628: feature:10883400-10883599:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11003313..11003512
location: region:11003313-11003512:1
BFO_0000051: feature:11003313-11003512:1:region
SIO_000974: ef09020a-51b7-4674-a3f2-34d0b7de34d0

position:11003313:1
position: 11003313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11003512:1
position: 11003512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ef09020a-51b7-4674-a3f2-34d0b7de34d0
SIO_000300: 1
SIO_000628: feature:11003313-11003512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12363594..12363793
location: region:12363594-12363793:1
BFO_0000051: feature:12363594-12363793:1:region
SIO_000974: 8aaeb29a-b521-4281-906d-6c872b657e73

position:12363594:1
position: 12363594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12363793:1
position: 12363793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8aaeb29a-b521-4281-906d-6c872b657e73
SIO_000300: 1
SIO_000628: feature:12363594-12363793:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12628834..12629033
location: region:12628834-12629033:1
BFO_0000051: feature:12628834-12629033:1:region
SIO_000974: c999a0b4-1bff-4ba2-9fe6-b6ebc995b00e

position:12628834:1
position: 12628834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12629033:1
position: 12629033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12628834-12629033:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15109892..15110091
location: region:15109892-15110091:1
BFO_0000051: feature:15109892-15110091:1:region
SIO_000974: 754346f5-c2a7-498f-acc3-45820359bba8

position:15109892:1
position: 15109892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15110091:1
position: 15110091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15109892-15110091:1:region

Eupithecia centaureata genome assembly, chromosome: 10.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 10.
sequence version: OX155685.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15330930
topology: linear
RO_0000086: SO_0000987
location: 1..15330930
location: region:1-15330930:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15330930:1
position: 15330930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15330930:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1799001..1799200
location: region:1799001-1799200:1
BFO_0000051: feature:1799001-1799200:1:region
SIO_000974: 73c74f0f-1512-4a8d-824d-cd3780a5f4de

position:1799001:1
position: 1799001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1799200:1
position: 1799200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73c74f0f-1512-4a8d-824d-cd3780a5f4de
SIO_000300: 1
SIO_000628: feature:1799001-1799200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5349052..5349251
location: region:5349052-5349251:1
BFO_0000051: feature:5349052-5349251:1:region
SIO_000974: 7da95e99-c845-49e2-986d-f4ec5243d458

position:5349052:1
position: 5349052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5349251:1
position: 5349251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5349052-5349251:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6697276..6697475
location: region:6697276-6697475:1
BFO_0000051: feature:6697276-6697475:1:region
SIO_000974: 631140e8-dd99-4cbd-b8de-08ead636bd70

position:6697276:1
position: 6697276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6697475:1
position: 6697475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6697276-6697475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7944640..7944839
location: region:7944640-7944839:1
BFO_0000051: feature:7944640-7944839:1:region
SIO_000974: e6ab1c38-2b20-4a33-b1e7-faf7723f88c6

position:7944640:1
position: 7944640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7944839:1
position: 7944839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7944640-7944839:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11060285..11060484
location: region:11060285-11060484:1
BFO_0000051: feature:11060285-11060484:1:region
SIO_000974: edba1dce-2450-462f-8a4e-9013bc5c68a7

position:11060285:1
position: 11060285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11060484:1
position: 11060484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11060285-11060484:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11606190..11606389
location: region:11606190-11606389:1
BFO_0000051: feature:11606190-11606389:1:region
SIO_000974: b893a7bb-aa45-4f65-a566-3ad431bd0965

position:11606190:1
position: 11606190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11606389:1
position: 11606389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b893a7bb-aa45-4f65-a566-3ad431bd0965
SIO_000300: 1
SIO_000628: feature:11606190-11606389:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11801917..11802116
location: region:11801917-11802116:1
BFO_0000051: feature:11801917-11802116:1:region
SIO_000974: c0b08d2f-ad49-466a-a07a-4d3c2aa80e4d

position:11801917:1
position: 11801917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11802116:1
position: 11802116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11801917-11802116:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12898119..12898318
location: region:12898119-12898318:1
BFO_0000051: feature:12898119-12898318:1:region
SIO_000974: b3042d6c-1815-4fae-96dd-586b80956e63

position:12898119:1
position: 12898119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12898318:1
position: 12898318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12898119-12898318:1:region

Eupithecia centaureata genome assembly, chromosome: 11.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 11.
sequence version: OX155686.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15329502
topology: linear
RO_0000086: SO_0000987
location: 1..15329502
location: region:1-15329502:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15329502:1
position: 15329502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15329502:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1239282..1239481
location: region:1239282-1239481:1
BFO_0000051: feature:1239282-1239481:1:region
SIO_000974: a49fbecb-c987-4a2a-a921-287d864dd7db

position:1239282:1
position: 1239282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1239481:1
position: 1239481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1239282-1239481:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3477634..3477833
location: region:3477634-3477833:1
BFO_0000051: feature:3477634-3477833:1:region
SIO_000974: 9df9be3a-4204-436c-b1d0-3486cfe2d000

position:3477634:1
position: 3477634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3477833:1
position: 3477833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3477634-3477833:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3647796..3647995
location: region:3647796-3647995:1
BFO_0000051: feature:3647796-3647995:1:region
SIO_000974: 0d011f36-55c1-4c3a-b719-c224a3584efd

position:3647796:1
position: 3647796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3647995:1
position: 3647995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0d011f36-55c1-4c3a-b719-c224a3584efd
SIO_000300: 1
SIO_000628: feature:3647796-3647995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3764097..3764296
location: region:3764097-3764296:1
BFO_0000051: feature:3764097-3764296:1:region
SIO_000974: 9151ba90-a7fd-4892-a3a5-2805ae4dd8d5

position:3764097:1
position: 3764097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3764296:1
position: 3764296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9151ba90-a7fd-4892-a3a5-2805ae4dd8d5
SIO_000300: 1
SIO_000628: feature:3764097-3764296:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4929515..4929714
location: region:4929515-4929714:1
BFO_0000051: feature:4929515-4929714:1:region
SIO_000974: 9360acdc-650a-4700-a909-c2fb1f529397

position:4929515:1
position: 4929515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4929714:1
position: 4929714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9360acdc-650a-4700-a909-c2fb1f529397
SIO_000300: 1
SIO_000628: feature:4929515-4929714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6765372..6765571
location: region:6765372-6765571:1
BFO_0000051: feature:6765372-6765571:1:region
SIO_000974: f35407bb-ad60-4e43-9ce1-f121b4d0c57a

position:6765372:1
position: 6765372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6765571:1
position: 6765571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f35407bb-ad60-4e43-9ce1-f121b4d0c57a
SIO_000300: 1
SIO_000628: feature:6765372-6765571:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9825298..9825497
location: region:9825298-9825497:1
BFO_0000051: feature:9825298-9825497:1:region
SIO_000974: 7abadef1-b7eb-42ef-a58c-4ba3f5de797b

position:9825298:1
position: 9825298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9825497:1
position: 9825497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7abadef1-b7eb-42ef-a58c-4ba3f5de797b
SIO_000300: 1
SIO_000628: feature:9825298-9825497:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9973602..9973801
location: region:9973602-9973801:1
BFO_0000051: feature:9973602-9973801:1:region
SIO_000974: f0c43871-795e-42fc-970d-755c37c85fea

position:9973602:1
position: 9973602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9973801:1
position: 9973801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0c43871-795e-42fc-970d-755c37c85fea
SIO_000300: 1
SIO_000628: feature:9973602-9973801:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11034772..11034971
location: region:11034772-11034971:1
BFO_0000051: feature:11034772-11034971:1:region
SIO_000974: cf333f96-8c21-43ea-8dcb-8e216fd4a0ba

position:11034772:1
position: 11034772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11034971:1
position: 11034971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf333f96-8c21-43ea-8dcb-8e216fd4a0ba
SIO_000300: 1
SIO_000628: feature:11034772-11034971:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13944972..13945171
location: region:13944972-13945171:1
BFO_0000051: feature:13944972-13945171:1:region
SIO_000974: ba061a8c-e322-428d-a886-5cc89b1b8e5e

position:13944972:1
position: 13944972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13945171:1
position: 13945171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba061a8c-e322-428d-a886-5cc89b1b8e5e
SIO_000300: 1
SIO_000628: feature:13944972-13945171:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14928864..14929063
location: region:14928864-14929063:1
BFO_0000051: feature:14928864-14929063:1:region
SIO_000974: c6cdb2ad-9042-4b17-ae37-5396ae0fc235

position:14928864:1
position: 14928864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14929063:1
position: 14929063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c6cdb2ad-9042-4b17-ae37-5396ae0fc235
SIO_000300: 1
SIO_000628: feature:14928864-14929063:1:region

Eupithecia centaureata genome assembly, chromosome: 12.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 12.
sequence version: OX155687.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15278876
topology: linear
RO_0000086: SO_0000987
location: 1..15278876
location: region:1-15278876:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15278876:1
position: 15278876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15278876:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1190564..1190763
location: region:1190564-1190763:1
BFO_0000051: feature:1190564-1190763:1:region
SIO_000974: a189abeb-ce3a-452d-ba17-b52fcaea365b

position:1190564:1
position: 1190564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1190763:1
position: 1190763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a189abeb-ce3a-452d-ba17-b52fcaea365b
SIO_000300: 1
SIO_000628: feature:1190564-1190763:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1717698..1717897
location: region:1717698-1717897:1
BFO_0000051: feature:1717698-1717897:1:region
SIO_000974: 7a019dfa-221b-4fb5-a133-27d531921e94

position:1717698:1
position: 1717698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1717897:1
position: 1717897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a019dfa-221b-4fb5-a133-27d531921e94
SIO_000300: 1
SIO_000628: feature:1717698-1717897:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4184898..4185097
location: region:4184898-4185097:1
BFO_0000051: feature:4184898-4185097:1:region
SIO_000974: d0f15c36-134c-46fc-b927-1bdc1f6e8cf1

position:4184898:1
position: 4184898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4185097:1
position: 4185097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d0f15c36-134c-46fc-b927-1bdc1f6e8cf1
SIO_000300: 1
SIO_000628: feature:4184898-4185097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6718020..6718219
location: region:6718020-6718219:1
BFO_0000051: feature:6718020-6718219:1:region
SIO_000974: 5caf7ad4-303d-4e0a-ac3c-eebd083e82c9

position:6718020:1
position: 6718020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6718219:1
position: 6718219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5caf7ad4-303d-4e0a-ac3c-eebd083e82c9
SIO_000300: 1
SIO_000628: feature:6718020-6718219:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8056165..8056364
location: region:8056165-8056364:1
BFO_0000051: feature:8056165-8056364:1:region
SIO_000974: f34cc95c-8b78-4874-93ea-b4b362266ec7

position:8056165:1
position: 8056165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8056364:1
position: 8056364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f34cc95c-8b78-4874-93ea-b4b362266ec7
SIO_000300: 1
SIO_000628: feature:8056165-8056364:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10485365..10485564
location: region:10485365-10485564:1
BFO_0000051: feature:10485365-10485564:1:region
SIO_000974: 8d010d74-3fe0-435e-ae5c-235110270ba0

position:10485365:1
position: 10485365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10485564:1
position: 10485564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d010d74-3fe0-435e-ae5c-235110270ba0
SIO_000300: 1
SIO_000628: feature:10485365-10485564:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12118397..12118596
location: region:12118397-12118596:1
BFO_0000051: feature:12118397-12118596:1:region
SIO_000974: f8b24a12-a515-48e7-a4b6-11119801f851

position:12118397:1
position: 12118397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12118596:1
position: 12118596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f8b24a12-a515-48e7-a4b6-11119801f851
SIO_000300: 1
SIO_000628: feature:12118397-12118596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12301820..12302019
location: region:12301820-12302019:1
BFO_0000051: feature:12301820-12302019:1:region
SIO_000974: 65e79268-b09d-4911-9efd-6f219fa26473

position:12301820:1
position: 12301820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12302019:1
position: 12302019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65e79268-b09d-4911-9efd-6f219fa26473
SIO_000300: 1
SIO_000628: feature:12301820-12302019:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13447677..13447876
location: region:13447677-13447876:1
BFO_0000051: feature:13447677-13447876:1:region
SIO_000974: b75d4f88-1c61-4f3b-bd56-d95fbfd83652

position:13447677:1
position: 13447677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13447876:1
position: 13447876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b75d4f88-1c61-4f3b-bd56-d95fbfd83652
SIO_000300: 1
SIO_000628: feature:13447677-13447876:1:region

Eupithecia centaureata genome assembly, chromosome: 13.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 13.
sequence version: OX155688.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15011971
topology: linear
RO_0000086: SO_0000987
location: 1..15011971
location: region:1-15011971:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15011971:1
position: 15011971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15011971:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1628001..1628200
location: region:1628001-1628200:1
BFO_0000051: feature:1628001-1628200:1:region
SIO_000974: ac6e77c7-a094-40bb-baad-cf2496f89150

position:1628001:1
position: 1628001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1628200:1
position: 1628200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac6e77c7-a094-40bb-baad-cf2496f89150
SIO_000300: 1
SIO_000628: feature:1628001-1628200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1851437..1851636
location: region:1851437-1851636:1
BFO_0000051: feature:1851437-1851636:1:region
SIO_000974: 420012e1-0f6e-44c8-93b5-f923431099bc

position:1851437:1
position: 1851437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1851636:1
position: 1851636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

420012e1-0f6e-44c8-93b5-f923431099bc
SIO_000300: 1
SIO_000628: feature:1851437-1851636:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3217145..3217344
location: region:3217145-3217344:1
BFO_0000051: feature:3217145-3217344:1:region
SIO_000974: dddbbcea-91bb-4127-83fd-98de429913f6

position:3217145:1
position: 3217145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3217344:1
position: 3217344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dddbbcea-91bb-4127-83fd-98de429913f6
SIO_000300: 1
SIO_000628: feature:3217145-3217344:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3936223..3936422
location: region:3936223-3936422:1
BFO_0000051: feature:3936223-3936422:1:region
SIO_000974: af49908e-340b-4c0a-aff1-7f69e0b356ce

position:3936223:1
position: 3936223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3936422:1
position: 3936422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af49908e-340b-4c0a-aff1-7f69e0b356ce
SIO_000300: 1
SIO_000628: feature:3936223-3936422:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5318098..5318297
location: region:5318098-5318297:1
BFO_0000051: feature:5318098-5318297:1:region
SIO_000974: 5cfcbefe-98ce-4356-aa44-63c5fe94365f

position:5318098:1
position: 5318098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5318297:1
position: 5318297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5cfcbefe-98ce-4356-aa44-63c5fe94365f
SIO_000300: 1
SIO_000628: feature:5318098-5318297:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6905064..6905263
location: region:6905064-6905263:1
BFO_0000051: feature:6905064-6905263:1:region
SIO_000974: d95bbe9c-c45c-4fac-858d-ebaba97a8e0b

position:6905064:1
position: 6905064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6905263:1
position: 6905263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d95bbe9c-c45c-4fac-858d-ebaba97a8e0b
SIO_000300: 1
SIO_000628: feature:6905064-6905263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8675930..8676129
location: region:8675930-8676129:1
BFO_0000051: feature:8675930-8676129:1:region
SIO_000974: e39cde20-919d-450f-a550-ce5360f6b22b

position:8675930:1
position: 8675930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8676129:1
position: 8676129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e39cde20-919d-450f-a550-ce5360f6b22b
SIO_000300: 1
SIO_000628: feature:8675930-8676129:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10282118..10282317
location: region:10282118-10282317:1
BFO_0000051: feature:10282118-10282317:1:region
SIO_000974: 9f2159bb-f7e1-4d75-8afa-9b12b2f5990b

position:10282118:1
position: 10282118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10282317:1
position: 10282317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f2159bb-f7e1-4d75-8afa-9b12b2f5990b
SIO_000300: 1
SIO_000628: feature:10282118-10282317:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10646355..10646554
location: region:10646355-10646554:1
BFO_0000051: feature:10646355-10646554:1:region
SIO_000974: 9d7196c4-34d0-4556-96a2-5d8748bb9680

position:10646355:1
position: 10646355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10646554:1
position: 10646554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d7196c4-34d0-4556-96a2-5d8748bb9680
SIO_000300: 1
SIO_000628: feature:10646355-10646554:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13431689..13431888
location: region:13431689-13431888:1
BFO_0000051: feature:13431689-13431888:1:region
SIO_000974: 8b7030e0-08ae-4797-a37a-216fd10d3da7

position:13431689:1
position: 13431689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13431888:1
position: 13431888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8b7030e0-08ae-4797-a37a-216fd10d3da7
SIO_000300: 1
SIO_000628: feature:13431689-13431888:1:region

Eupithecia centaureata genome assembly, chromosome: 14.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 14.
sequence version: OX155689.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14952860
topology: linear
RO_0000086: SO_0000987
location: 1..14952860
location: region:1-14952860:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14952860:1
position: 14952860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14952860:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1150295..1150494
location: region:1150295-1150494:1
BFO_0000051: feature:1150295-1150494:1:region
SIO_000974: a50caf24-f8b2-40bc-91a1-e6ac93b7b299

position:1150295:1
position: 1150295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1150494:1
position: 1150494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a50caf24-f8b2-40bc-91a1-e6ac93b7b299
SIO_000300: 1
SIO_000628: feature:1150295-1150494:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1328601..1328800
location: region:1328601-1328800:1
BFO_0000051: feature:1328601-1328800:1:region
SIO_000974: d2d28158-70f1-450d-88cf-eb4c5434f427

position:1328601:1
position: 1328601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1328800:1
position: 1328800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d2d28158-70f1-450d-88cf-eb4c5434f427
SIO_000300: 1
SIO_000628: feature:1328601-1328800:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3153801..3154000
location: region:3153801-3154000:1
BFO_0000051: feature:3153801-3154000:1:region
SIO_000974: fe737e14-c510-4ff6-89bc-d933098250ab

position:3153801:1
position: 3153801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3154000:1
position: 3154000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe737e14-c510-4ff6-89bc-d933098250ab
SIO_000300: 1
SIO_000628: feature:3153801-3154000:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4287763..4287962
location: region:4287763-4287962:1
BFO_0000051: feature:4287763-4287962:1:region
SIO_000974: 7ededb07-c527-4e31-b469-927829241533

position:4287763:1
position: 4287763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4287962:1
position: 4287962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ededb07-c527-4e31-b469-927829241533
SIO_000300: 1
SIO_000628: feature:4287763-4287962:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6224413..6224612
location: region:6224413-6224612:1
BFO_0000051: feature:6224413-6224612:1:region
SIO_000974: c498aebb-5733-467b-8165-3522274c8801

position:6224413:1
position: 6224413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6224612:1
position: 6224612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c498aebb-5733-467b-8165-3522274c8801
SIO_000300: 1
SIO_000628: feature:6224413-6224612:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9623613..9623812
location: region:9623613-9623812:1
BFO_0000051: feature:9623613-9623812:1:region
SIO_000974: ec9005b7-4b98-4f9f-b7bc-ec3621d7b7ff

position:9623613:1
position: 9623613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9623812:1
position: 9623812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec9005b7-4b98-4f9f-b7bc-ec3621d7b7ff
SIO_000300: 1
SIO_000628: feature:9623613-9623812:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10308843..10309042
location: region:10308843-10309042:1
BFO_0000051: feature:10308843-10309042:1:region
SIO_000974: bb3b2440-1288-44d2-b091-e37778add5a0

position:10308843:1
position: 10308843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10309042:1
position: 10309042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb3b2440-1288-44d2-b091-e37778add5a0
SIO_000300: 1
SIO_000628: feature:10308843-10309042:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10367464..10367663
location: region:10367464-10367663:1
BFO_0000051: feature:10367464-10367663:1:region
SIO_000974: 485a89ff-5756-4d98-b0dc-337f74d08643

position:10367464:1
position: 10367464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10367663:1
position: 10367663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

485a89ff-5756-4d98-b0dc-337f74d08643
SIO_000300: 1
SIO_000628: feature:10367464-10367663:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11427388..11427587
location: region:11427388-11427587:1
BFO_0000051: feature:11427388-11427587:1:region
SIO_000974: 08c56aaa-0e2b-49c6-8382-d30f47007956

position:11427388:1
position: 11427388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11427587:1
position: 11427587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

08c56aaa-0e2b-49c6-8382-d30f47007956
SIO_000300: 1
SIO_000628: feature:11427388-11427587:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11566708..11566907
location: region:11566708-11566907:1
BFO_0000051: feature:11566708-11566907:1:region
SIO_000974: 74a6e0b2-20c2-47cb-a604-9367822488cc

position:11566708:1
position: 11566708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11566907:1
position: 11566907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74a6e0b2-20c2-47cb-a604-9367822488cc
SIO_000300: 1
SIO_000628: feature:11566708-11566907:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13278812..13279011
location: region:13278812-13279011:1
BFO_0000051: feature:13278812-13279011:1:region
SIO_000974: 6ec10f60-5142-466f-ae15-6ca01535a38e

position:13278812:1
position: 13278812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13279011:1
position: 13279011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6ec10f60-5142-466f-ae15-6ca01535a38e
SIO_000300: 1
SIO_000628: feature:13278812-13279011:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13443663..13443862
location: region:13443663-13443862:1
BFO_0000051: feature:13443663-13443862:1:region
SIO_000974: 03c1007b-b588-41e0-a6f3-5d251c89323b

position:13443663:1
position: 13443663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13443862:1
position: 13443862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03c1007b-b588-41e0-a6f3-5d251c89323b
SIO_000300: 1
SIO_000628: feature:13443663-13443862:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14437661..14437860
location: region:14437661-14437860:1
BFO_0000051: feature:14437661-14437860:1:region
SIO_000974: 146f3379-f34d-4eee-9bc4-172798da0086

position:14437661:1
position: 14437661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14437860:1
position: 14437860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

146f3379-f34d-4eee-9bc4-172798da0086
SIO_000300: 1
SIO_000628: feature:14437661-14437860:1:region

Eupithecia centaureata genome assembly, chromosome: 15.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 15.
sequence version: OX155690.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14827715
topology: linear
RO_0000086: SO_0000987
location: 1..14827715
location: region:1-14827715:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14827715:1
position: 14827715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14827715:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1493238..1493437
location: region:1493238-1493437:1
BFO_0000051: feature:1493238-1493437:1:region
SIO_000974: 34246457-465c-4601-bd68-7e8aab514a72

position:1493238:1
position: 1493238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1493437:1
position: 1493437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1493238-1493437:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1836154..1836353
location: region:1836154-1836353:1
BFO_0000051: feature:1836154-1836353:1:region
SIO_000974: 6f15f225-2d99-4bb3-9295-e44440b90d78

position:1836154:1
position: 1836154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1836353:1
position: 1836353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1836154-1836353:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4333162..4333361
location: region:4333162-4333361:1
BFO_0000051: feature:4333162-4333361:1:region
SIO_000974: 05288ed4-fa67-4c54-8dc1-fa4cbe4577f4

position:4333162:1
position: 4333162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4333361:1
position: 4333361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05288ed4-fa67-4c54-8dc1-fa4cbe4577f4
SIO_000300: 1
SIO_000628: feature:4333162-4333361:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4531553..4531752
location: region:4531553-4531752:1
BFO_0000051: feature:4531553-4531752:1:region
SIO_000974: d0bd185b-618c-4943-bdff-d15f430570a6

position:4531553:1
position: 4531553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4531752:1
position: 4531752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d0bd185b-618c-4943-bdff-d15f430570a6
SIO_000300: 1
SIO_000628: feature:4531553-4531752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6115901..6116100
location: region:6115901-6116100:1
BFO_0000051: feature:6115901-6116100:1:region
SIO_000974: 0a7dad59-ece7-4e2a-a464-c3fe59775b87

position:6115901:1
position: 6115901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6116100:1
position: 6116100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a7dad59-ece7-4e2a-a464-c3fe59775b87
SIO_000300: 1
SIO_000628: feature:6115901-6116100:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6866375..6866574
location: region:6866375-6866574:1
BFO_0000051: feature:6866375-6866574:1:region
SIO_000974: 35c689f3-d4ad-4976-a53c-85b0f5614f16

position:6866375:1
position: 6866375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6866574:1
position: 6866574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6866375-6866574:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6936335..6936534
location: region:6936335-6936534:1
BFO_0000051: feature:6936335-6936534:1:region
SIO_000974: 792e3e1b-83bc-42ab-a508-32102f42ccd2

position:6936335:1
position: 6936335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6936534:1
position: 6936534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6936335-6936534:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8053604..8053803
location: region:8053604-8053803:1
BFO_0000051: feature:8053604-8053803:1:region
SIO_000974: ed2dbfa5-d425-49ed-8b62-067c18b32fea

position:8053604:1
position: 8053604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8053803:1
position: 8053803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8053604-8053803:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8163638..8163837
location: region:8163638-8163837:1
BFO_0000051: feature:8163638-8163837:1:region
SIO_000974: 663c0606-4a75-49b3-a5a8-d45e759f6bef

position:8163638:1
position: 8163638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8163837:1
position: 8163837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8163638-8163837:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8494684..8494883
location: region:8494684-8494883:1
BFO_0000051: feature:8494684-8494883:1:region
SIO_000974: 133d42a8-5c9a-48af-b7c3-37a7e269107b

position:8494684:1
position: 8494684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8494883:1
position: 8494883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8494684-8494883:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9343685..9343884
location: region:9343685-9343884:1
BFO_0000051: feature:9343685-9343884:1:region
SIO_000974: 116b033b-2ede-4dd0-8a1d-a17725d218db

position:9343685:1
position: 9343685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9343884:1
position: 9343884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9343685-9343884:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9585027..9585226
location: region:9585027-9585226:1
BFO_0000051: feature:9585027-9585226:1:region
SIO_000974: ea6147e6-78b2-4d71-a8a8-d503dea1eaec

position:9585027:1
position: 9585027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9585226:1
position: 9585226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9585027-9585226:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11191568..11191767
location: region:11191568-11191767:1
BFO_0000051: feature:11191568-11191767:1:region
SIO_000974: 69fe33ca-6a46-4b24-81b3-fc6808cbda9f

position:11191568:1
position: 11191568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11191767:1
position: 11191767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11191568-11191767:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11805238..11805437
location: region:11805238-11805437:1
BFO_0000051: feature:11805238-11805437:1:region
SIO_000974: 0716c745-6a19-41d2-85db-302a92334df6

position:11805238:1
position: 11805238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11805437:1
position: 11805437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11805238-11805437:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12768438..12768637
location: region:12768438-12768637:1
BFO_0000051: feature:12768438-12768637:1:region
SIO_000974: 7f7230ce-e591-4329-bece-61d2f2c8e640

position:12768438:1
position: 12768438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12768637:1
position: 12768637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f7230ce-e591-4329-bece-61d2f2c8e640
SIO_000300: 1
SIO_000628: feature:12768438-12768637:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12810701..12810900
location: region:12810701-12810900:1
BFO_0000051: feature:12810701-12810900:1:region
SIO_000974: ca62ad11-cb20-470e-9085-e1a4967a49e0

position:12810701:1
position: 12810701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12810900:1
position: 12810900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ca62ad11-cb20-470e-9085-e1a4967a49e0
SIO_000300: 1
SIO_000628: feature:12810701-12810900:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14081585..14081784
location: region:14081585-14081784:1
BFO_0000051: feature:14081585-14081784:1:region
SIO_000974: 965a5788-ad3a-437c-84b4-db741bc43206

position:14081585:1
position: 14081585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14081784:1
position: 14081784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

965a5788-ad3a-437c-84b4-db741bc43206
SIO_000300: 1
SIO_000628: feature:14081585-14081784:1:region

Eupithecia centaureata genome assembly, chromosome: 16.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 16.
sequence version: OX155691.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14719322
topology: linear
RO_0000086: SO_0000987
location: 1..14719322
location: region:1-14719322:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14719322:1
position: 14719322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14719322:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1390001..1390200
location: region:1390001-1390200:1
BFO_0000051: feature:1390001-1390200:1:region
SIO_000974: 22c0dd94-88a8-43db-ac78-18f29d316e4f

position:1390001:1
position: 1390001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1390200:1
position: 1390200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22c0dd94-88a8-43db-ac78-18f29d316e4f
SIO_000300: 1
SIO_000628: feature:1390001-1390200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1809395..1809594
location: region:1809395-1809594:1
BFO_0000051: feature:1809395-1809594:1:region
SIO_000974: 41dd7746-7bf5-49a4-8990-ea6abb23497e

position:1809395:1
position: 1809395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1809594:1
position: 1809594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41dd7746-7bf5-49a4-8990-ea6abb23497e
SIO_000300: 1
SIO_000628: feature:1809395-1809594:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3017848..3018047
location: region:3017848-3018047:1
BFO_0000051: feature:3017848-3018047:1:region
SIO_000974: 4fcc056a-3733-4948-ae1c-96b9bdbe646a

position:3017848:1
position: 3017848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3018047:1
position: 3018047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4fcc056a-3733-4948-ae1c-96b9bdbe646a
SIO_000300: 1
SIO_000628: feature:3017848-3018047:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3383509..3383708
location: region:3383509-3383708:1
BFO_0000051: feature:3383509-3383708:1:region
SIO_000974: 765a6afd-7f4f-49d5-bad6-ffa39342d298

position:3383509:1
position: 3383509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3383708:1
position: 3383708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3383509-3383708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3575952..3576151
location: region:3575952-3576151:1
BFO_0000051: feature:3575952-3576151:1:region
SIO_000974: 7c4afedc-4014-4e93-ba71-0dac66d1c087

position:3575952:1
position: 3575952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3576151:1
position: 3576151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3575952-3576151:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4712627..4712826
location: region:4712627-4712826:1
BFO_0000051: feature:4712627-4712826:1:region
SIO_000974: 51fc6152-d559-4f0c-b7f9-12af0c186514

position:4712627:1
position: 4712627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4712826:1
position: 4712826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51fc6152-d559-4f0c-b7f9-12af0c186514
SIO_000300: 1
SIO_000628: feature:4712627-4712826:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5886059..5886258
location: region:5886059-5886258:1
BFO_0000051: feature:5886059-5886258:1:region
SIO_000974: a7dd10d6-dacd-4644-933d-3f64efac3de1

position:5886059:1
position: 5886059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5886258:1
position: 5886258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a7dd10d6-dacd-4644-933d-3f64efac3de1
SIO_000300: 1
SIO_000628: feature:5886059-5886258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8084287..8084486
location: region:8084287-8084486:1
BFO_0000051: feature:8084287-8084486:1:region
SIO_000974: 2d23f2df-da22-4065-96cd-f98f9c6f2d83

position:8084287:1
position: 8084287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8084486:1
position: 8084486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d23f2df-da22-4065-96cd-f98f9c6f2d83
SIO_000300: 1
SIO_000628: feature:8084287-8084486:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9245954..9246153
location: region:9245954-9246153:1
BFO_0000051: feature:9245954-9246153:1:region
SIO_000974: 22acf51a-02f1-4734-8f4c-34cba947d66d

position:9245954:1
position: 9245954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9246153:1
position: 9246153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22acf51a-02f1-4734-8f4c-34cba947d66d
SIO_000300: 1
SIO_000628: feature:9245954-9246153:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9465772..9465971
location: region:9465772-9465971:1
BFO_0000051: feature:9465772-9465971:1:region
SIO_000974: 2febf654-b1e5-435d-a759-013d89ca4563

position:9465772:1
position: 9465772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9465971:1
position: 9465971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2febf654-b1e5-435d-a759-013d89ca4563
SIO_000300: 1
SIO_000628: feature:9465772-9465971:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11426379..11426578
location: region:11426379-11426578:1
BFO_0000051: feature:11426379-11426578:1:region
SIO_000974: b385a373-b9fa-43d4-a3d9-a992fd5bc493

position:11426379:1
position: 11426379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11426578:1
position: 11426578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b385a373-b9fa-43d4-a3d9-a992fd5bc493
SIO_000300: 1
SIO_000628: feature:11426379-11426578:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13943579..13943778
location: region:13943579-13943778:1
BFO_0000051: feature:13943579-13943778:1:region
SIO_000974: 5d8278d8-9573-4739-9d18-ad9b2dbd6545

position:13943579:1
position: 13943579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13943778:1
position: 13943778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5d8278d8-9573-4739-9d18-ad9b2dbd6545
SIO_000300: 1
SIO_000628: feature:13943579-13943778:1:region

Eupithecia centaureata genome assembly, chromosome: 17.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 17.
sequence version: OX155692.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14590290
topology: linear
RO_0000086: SO_0000987
location: 1..14590290
location: region:1-14590290:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14590290:1
position: 14590290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14590290:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59694..59893
location: region:59694-59893:1
BFO_0000051: feature:59694-59893:1:region
SIO_000974: dd77d904-5c18-4599-82d9-7246a0682a68

position:59694:1
position: 59694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59893:1
position: 59893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd77d904-5c18-4599-82d9-7246a0682a68
SIO_000300: 1
SIO_000628: feature:59694-59893:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1145894..1146093
location: region:1145894-1146093:1
BFO_0000051: feature:1145894-1146093:1:region
SIO_000974: 11348f27-4e25-4948-b7ab-b641236a0feb

position:1145894:1
position: 1145894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1146093:1
position: 1146093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

11348f27-4e25-4948-b7ab-b641236a0feb
SIO_000300: 1
SIO_000628: feature:1145894-1146093:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2423997..2424196
location: region:2423997-2424196:1
BFO_0000051: feature:2423997-2424196:1:region
SIO_000974: 37084a3f-493e-43bf-8b64-ad84ccfda1bd

position:2423997:1
position: 2423997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2424196:1
position: 2424196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37084a3f-493e-43bf-8b64-ad84ccfda1bd
SIO_000300: 1
SIO_000628: feature:2423997-2424196:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2691879..2692078
location: region:2691879-2692078:1
BFO_0000051: feature:2691879-2692078:1:region
SIO_000974: 72b53d10-afad-4361-b895-9fc5014a0c81

position:2691879:1
position: 2691879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2692078:1
position: 2692078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72b53d10-afad-4361-b895-9fc5014a0c81
SIO_000300: 1
SIO_000628: feature:2691879-2692078:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5418529..5418728
location: region:5418529-5418728:1
BFO_0000051: feature:5418529-5418728:1:region
SIO_000974: 1dc6eb8e-8de9-4a5d-b1fe-17220ea66672

position:5418529:1
position: 5418529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5418728:1
position: 5418728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1dc6eb8e-8de9-4a5d-b1fe-17220ea66672
SIO_000300: 1
SIO_000628: feature:5418529-5418728:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7836481..7836680
location: region:7836481-7836680:1
BFO_0000051: feature:7836481-7836680:1:region
SIO_000974: 41187098-78c5-4a59-8671-2b161bd6f2ab

position:7836481:1
position: 7836481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7836680:1
position: 7836680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41187098-78c5-4a59-8671-2b161bd6f2ab
SIO_000300: 1
SIO_000628: feature:7836481-7836680:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8584821..8585020
location: region:8584821-8585020:1
BFO_0000051: feature:8584821-8585020:1:region
SIO_000974: d05cd46c-06ad-4ba3-b47e-42c5b7a4baba

position:8584821:1
position: 8584821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8585020:1
position: 8585020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d05cd46c-06ad-4ba3-b47e-42c5b7a4baba
SIO_000300: 1
SIO_000628: feature:8584821-8585020:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9717021..9717220
location: region:9717021-9717220:1
BFO_0000051: feature:9717021-9717220:1:region
SIO_000974: 40db1df8-996a-4827-bbfe-a1e71960be8b

position:9717021:1
position: 9717021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9717220:1
position: 9717220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40db1df8-996a-4827-bbfe-a1e71960be8b
SIO_000300: 1
SIO_000628: feature:9717021-9717220:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11637004..11637203
location: region:11637004-11637203:1
BFO_0000051: feature:11637004-11637203:1:region
SIO_000974: 6014fb22-0fa9-4569-8b68-f622971c3628

position:11637004:1
position: 11637004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11637203:1
position: 11637203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6014fb22-0fa9-4569-8b68-f622971c3628
SIO_000300: 1
SIO_000628: feature:11637004-11637203:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12594091..12594290
location: region:12594091-12594290:1
BFO_0000051: feature:12594091-12594290:1:region
SIO_000974: 0526a9e5-e88c-4579-816c-7914fbd6b8ca

position:12594091:1
position: 12594091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12594290:1
position: 12594290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0526a9e5-e88c-4579-816c-7914fbd6b8ca
SIO_000300: 1
SIO_000628: feature:12594091-12594290:1:region

Eupithecia centaureata genome assembly, chromosome: 18.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 18.
sequence version: OX155693.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14014667
topology: linear
RO_0000086: SO_0000987
location: 1..14014667
location: region:1-14014667:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14014667:1
position: 14014667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14014667:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 689001..689200
location: region:689001-689200:1
BFO_0000051: feature:689001-689200:1:region
SIO_000974: 79750153-fb69-4f62-9db2-8064d9547d26

position:689001:1
position: 689001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:689200:1
position: 689200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

79750153-fb69-4f62-9db2-8064d9547d26
SIO_000300: 1
SIO_000628: feature:689001-689200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1057542..1057741
location: region:1057542-1057741:1
BFO_0000051: feature:1057542-1057741:1:region
SIO_000974: 1c6bdeb5-0a8b-45c4-9f19-bc203669b1c3

position:1057542:1
position: 1057542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1057741:1
position: 1057741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c6bdeb5-0a8b-45c4-9f19-bc203669b1c3
SIO_000300: 1
SIO_000628: feature:1057542-1057741:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2182855..2183054
location: region:2182855-2183054:1
BFO_0000051: feature:2182855-2183054:1:region
SIO_000974: db5a36ed-df72-4cf9-b7e4-790b02f5a7f8

position:2182855:1
position: 2182855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2183054:1
position: 2183054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db5a36ed-df72-4cf9-b7e4-790b02f5a7f8
SIO_000300: 1
SIO_000628: feature:2182855-2183054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2675053..2675252
location: region:2675053-2675252:1
BFO_0000051: feature:2675053-2675252:1:region
SIO_000974: 54dbe3c7-a302-4565-b349-b738f1cb71bf

position:2675053:1
position: 2675053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2675252:1
position: 2675252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

54dbe3c7-a302-4565-b349-b738f1cb71bf
SIO_000300: 1
SIO_000628: feature:2675053-2675252:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6552404..6552603
location: region:6552404-6552603:1
BFO_0000051: feature:6552404-6552603:1:region
SIO_000974: da566e22-0e46-435a-b81b-dffc994b5692

position:6552404:1
position: 6552404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6552603:1
position: 6552603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da566e22-0e46-435a-b81b-dffc994b5692
SIO_000300: 1
SIO_000628: feature:6552404-6552603:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6762062..6762261
location: region:6762062-6762261:1
BFO_0000051: feature:6762062-6762261:1:region
SIO_000974: 10287dc0-ea9f-42f2-be96-79c08fe0afb5

position:6762062:1
position: 6762062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6762261:1
position: 6762261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10287dc0-ea9f-42f2-be96-79c08fe0afb5
SIO_000300: 1
SIO_000628: feature:6762062-6762261:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9202991..9203190
location: region:9202991-9203190:1
BFO_0000051: feature:9202991-9203190:1:region
SIO_000974: 426e4b55-7e06-4390-add6-af34715cdf58

position:9202991:1
position: 9202991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9203190:1
position: 9203190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

426e4b55-7e06-4390-add6-af34715cdf58
SIO_000300: 1
SIO_000628: feature:9202991-9203190:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12325397..12325596
location: region:12325397-12325596:1
BFO_0000051: feature:12325397-12325596:1:region
SIO_000974: 27b0de68-d245-4a72-a856-51c190668f3e

position:12325397:1
position: 12325397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12325596:1
position: 12325596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27b0de68-d245-4a72-a856-51c190668f3e
SIO_000300: 1
SIO_000628: feature:12325397-12325596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13234245..13234444
location: region:13234245-13234444:1
BFO_0000051: feature:13234245-13234444:1:region
SIO_000974: 93baa89a-1cdc-48dd-a940-504477b0cdd8

position:13234245:1
position: 13234245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13234444:1
position: 13234444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93baa89a-1cdc-48dd-a940-504477b0cdd8
SIO_000300: 1
SIO_000628: feature:13234245-13234444:1:region

Eupithecia centaureata genome assembly, chromosome: 19.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 19.
sequence version: OX155694.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13483454
topology: linear
RO_0000086: SO_0000987
location: 1..13483454
location: region:1-13483454:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13483454:1
position: 13483454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13483454:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1156001..1156200
location: region:1156001-1156200:1
BFO_0000051: feature:1156001-1156200:1:region
SIO_000974: ba8bf853-80fb-4ddd-a5e3-d7d0171956b0

position:1156001:1
position: 1156001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1156200:1
position: 1156200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba8bf853-80fb-4ddd-a5e3-d7d0171956b0
SIO_000300: 1
SIO_000628: feature:1156001-1156200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1190303..1190502
location: region:1190303-1190502:1
BFO_0000051: feature:1190303-1190502:1:region
SIO_000974: 746e213d-9d77-42ad-861c-cd88084e8483

position:1190303:1
position: 1190303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1190502:1
position: 1190502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

746e213d-9d77-42ad-861c-cd88084e8483
SIO_000300: 1
SIO_000628: feature:1190303-1190502:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1721503..1721702
location: region:1721503-1721702:1
BFO_0000051: feature:1721503-1721702:1:region
SIO_000974: 31e910fc-e371-4084-835a-9be32e59ad63

position:1721503:1
position: 1721503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1721702:1
position: 1721702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31e910fc-e371-4084-835a-9be32e59ad63
SIO_000300: 1
SIO_000628: feature:1721503-1721702:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3658754..3658953
location: region:3658754-3658953:1
BFO_0000051: feature:3658754-3658953:1:region
SIO_000974: 4e77a6b1-9371-4c76-a31e-9e0c87f6c2af

position:3658754:1
position: 3658754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3658953:1
position: 3658953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e77a6b1-9371-4c76-a31e-9e0c87f6c2af
SIO_000300: 1
SIO_000628: feature:3658754-3658953:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6417258..6417457
location: region:6417258-6417457:1
BFO_0000051: feature:6417258-6417457:1:region
SIO_000974: daf2bb0d-f4f8-4082-9014-cd959c4c4ee9

position:6417258:1
position: 6417258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6417457:1
position: 6417457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6417258-6417457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7873442..7873641
location: region:7873442-7873641:1
BFO_0000051: feature:7873442-7873641:1:region
SIO_000974: 69733d6e-e60a-4440-ba2d-a4e7a859b69b

position:7873442:1
position: 7873442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7873641:1
position: 7873641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7873442-7873641:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8959721..8959920
location: region:8959721-8959920:1
BFO_0000051: feature:8959721-8959920:1:region
SIO_000974: aa2d090a-c228-4108-8fc9-0361cf0341e9

position:8959721:1
position: 8959721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8959920:1
position: 8959920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8959721-8959920:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10198996..10199195
location: region:10198996-10199195:1
BFO_0000051: feature:10198996-10199195:1:region
SIO_000974: b7bc3a83-ba5a-438d-bd59-2033567596fe

position:10198996:1
position: 10198996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10199195:1
position: 10199195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7bc3a83-ba5a-438d-bd59-2033567596fe
SIO_000300: 1
SIO_000628: feature:10198996-10199195:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10933255..10933454
location: region:10933255-10933454:1
BFO_0000051: feature:10933255-10933454:1:region
SIO_000974: 5e7518f2-576c-43e8-9439-52e1ca8f6af1

position:10933255:1
position: 10933255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10933454:1
position: 10933454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e7518f2-576c-43e8-9439-52e1ca8f6af1
SIO_000300: 1
SIO_000628: feature:10933255-10933454:1:region

Eupithecia centaureata genome assembly, chromosome: 20.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 20.
sequence version: OX155695.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12745949
topology: linear
RO_0000086: SO_0000987
location: 1..12745949
location: region:1-12745949:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12745949:1
position: 12745949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12745949:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2076300..2076499
location: region:2076300-2076499:1
BFO_0000051: feature:2076300-2076499:1:region
SIO_000974: 4ce80491-e0c4-4f6d-8a62-6bfdf75a69dd

position:2076300:1
position: 2076300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2076499:1
position: 2076499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4ce80491-e0c4-4f6d-8a62-6bfdf75a69dd
SIO_000300: 1
SIO_000628: feature:2076300-2076499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2308866..2309065
location: region:2308866-2309065:1
BFO_0000051: feature:2308866-2309065:1:region
SIO_000974: afa6d85f-948d-4b8d-9c37-799a39b42735

position:2308866:1
position: 2308866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2309065:1
position: 2309065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2308866-2309065:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2537871..2538070
location: region:2537871-2538070:1
BFO_0000051: feature:2537871-2538070:1:region
SIO_000974: 6db14a0d-eea4-4857-ba16-8aa4d12748e1

position:2537871:1
position: 2537871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2538070:1
position: 2538070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6db14a0d-eea4-4857-ba16-8aa4d12748e1
SIO_000300: 1
SIO_000628: feature:2537871-2538070:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3411644..3411843
location: region:3411644-3411843:1
BFO_0000051: feature:3411644-3411843:1:region
SIO_000974: d1e30d84-a3dd-4209-a185-95b163b821bb

position:3411644:1
position: 3411644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3411843:1
position: 3411843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1e30d84-a3dd-4209-a185-95b163b821bb
SIO_000300: 1
SIO_000628: feature:3411644-3411843:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3851284..3851483
location: region:3851284-3851483:1
BFO_0000051: feature:3851284-3851483:1:region
SIO_000974: 6b75049f-f0de-45d1-8e6c-160e37350787

position:3851284:1
position: 3851284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3851483:1
position: 3851483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b75049f-f0de-45d1-8e6c-160e37350787
SIO_000300: 1
SIO_000628: feature:3851284-3851483:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4437553..4437752
location: region:4437553-4437752:1
BFO_0000051: feature:4437553-4437752:1:region
SIO_000974: 558aee0e-0aa8-4fac-a087-b65c050385b1

position:4437553:1
position: 4437553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4437752:1
position: 4437752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

558aee0e-0aa8-4fac-a087-b65c050385b1
SIO_000300: 1
SIO_000628: feature:4437553-4437752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5846753..5846952
location: region:5846753-5846952:1
BFO_0000051: feature:5846753-5846952:1:region
SIO_000974: e7ea81e0-303d-49ed-a1d7-ff6dcc04d512

position:5846753:1
position: 5846753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5846952:1
position: 5846952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e7ea81e0-303d-49ed-a1d7-ff6dcc04d512
SIO_000300: 1
SIO_000628: feature:5846753-5846952:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5886232..5886431
location: region:5886232-5886431:1
BFO_0000051: feature:5886232-5886431:1:region
SIO_000974: d831a25b-50ab-4e44-84eb-9e3826f8c23f

position:5886232:1
position: 5886232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5886431:1
position: 5886431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d831a25b-50ab-4e44-84eb-9e3826f8c23f
SIO_000300: 1
SIO_000628: feature:5886232-5886431:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6062889..6063088
location: region:6062889-6063088:1
BFO_0000051: feature:6062889-6063088:1:region
SIO_000974: 0f072440-5aa9-4b1b-8d08-c06fb3a86afe

position:6062889:1
position: 6062889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6063088:1
position: 6063088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0f072440-5aa9-4b1b-8d08-c06fb3a86afe
SIO_000300: 1
SIO_000628: feature:6062889-6063088:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6174089..6174288
location: region:6174089-6174288:1
BFO_0000051: feature:6174089-6174288:1:region
SIO_000974: b1772a40-f829-433c-80ab-5e5813f34acf

position:6174089:1
position: 6174089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6174288:1
position: 6174288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b1772a40-f829-433c-80ab-5e5813f34acf
SIO_000300: 1
SIO_000628: feature:6174089-6174288:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8987632..8987831
location: region:8987632-8987831:1
BFO_0000051: feature:8987632-8987831:1:region
SIO_000974: 829cd2ce-7281-4b61-8cac-5870bfb8a82a

position:8987632:1
position: 8987632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8987831:1
position: 8987831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

829cd2ce-7281-4b61-8cac-5870bfb8a82a
SIO_000300: 1
SIO_000628: feature:8987632-8987831:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9513550..9513749
location: region:9513550-9513749:1
BFO_0000051: feature:9513550-9513749:1:region
SIO_000974: 93909329-b9e4-42d8-a0cf-af859ffd1156

position:9513550:1
position: 9513550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9513749:1
position: 9513749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93909329-b9e4-42d8-a0cf-af859ffd1156
SIO_000300: 1
SIO_000628: feature:9513550-9513749:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11237750..11237949
location: region:11237750-11237949:1
BFO_0000051: feature:11237750-11237949:1:region
SIO_000974: 220ccfc6-c7a6-48ff-b3cd-531fbd6f0ba8

position:11237750:1
position: 11237750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11237949:1
position: 11237949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

220ccfc6-c7a6-48ff-b3cd-531fbd6f0ba8
SIO_000300: 1
SIO_000628: feature:11237750-11237949:1:region

Eupithecia centaureata genome assembly, chromosome: 21.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 21.
sequence version: OX155696.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12452072
topology: linear
RO_0000086: SO_0000987
location: 1..12452072
location: region:1-12452072:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12452072:1
position: 12452072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12452072:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 748687..748886
location: region:748687-748886:1
BFO_0000051: feature:748687-748886:1:region
SIO_000974: 8ff27d87-58b6-4c1e-9487-d96261c3f763

position:748687:1
position: 748687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:748886:1
position: 748886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ff27d87-58b6-4c1e-9487-d96261c3f763
SIO_000300: 1
SIO_000628: feature:748687-748886:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1155887..1156086
location: region:1155887-1156086:1
BFO_0000051: feature:1155887-1156086:1:region
SIO_000974: cba0137c-5b30-44cd-9b74-bcc3218b4a86

position:1155887:1
position: 1155887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1156086:1
position: 1156086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cba0137c-5b30-44cd-9b74-bcc3218b4a86
SIO_000300: 1
SIO_000628: feature:1155887-1156086:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1677584..1677783
location: region:1677584-1677783:1
BFO_0000051: feature:1677584-1677783:1:region
SIO_000974: 6eed0712-663e-40e8-9fa6-c688e06205ef

position:1677584:1
position: 1677584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1677783:1
position: 1677783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6eed0712-663e-40e8-9fa6-c688e06205ef
SIO_000300: 1
SIO_000628: feature:1677584-1677783:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1850135..1850334
location: region:1850135-1850334:1
BFO_0000051: feature:1850135-1850334:1:region
SIO_000974: 32e4a43c-ddb2-42e1-ae22-e444ec009c34

position:1850135:1
position: 1850135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1850334:1
position: 1850334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32e4a43c-ddb2-42e1-ae22-e444ec009c34
SIO_000300: 1
SIO_000628: feature:1850135-1850334:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2924976..2925175
location: region:2924976-2925175:1
BFO_0000051: feature:2924976-2925175:1:region
SIO_000974: 7a8ba4ac-4b16-4816-8686-bf8c1930b4c1

position:2924976:1
position: 2924976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2925175:1
position: 2925175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a8ba4ac-4b16-4816-8686-bf8c1930b4c1
SIO_000300: 1
SIO_000628: feature:2924976-2925175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3214177..3214376
location: region:3214177-3214376:1
BFO_0000051: feature:3214177-3214376:1:region
SIO_000974: 216fbe11-68ea-4eff-b230-ef56ccad9918

position:3214177:1
position: 3214177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3214376:1
position: 3214376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

216fbe11-68ea-4eff-b230-ef56ccad9918
SIO_000300: 1
SIO_000628: feature:3214177-3214376:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4370447..4370646
location: region:4370447-4370646:1
BFO_0000051: feature:4370447-4370646:1:region
SIO_000974: 84e88199-62be-4645-8181-eecc84b309da

position:4370447:1
position: 4370447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4370646:1
position: 4370646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

84e88199-62be-4645-8181-eecc84b309da
SIO_000300: 1
SIO_000628: feature:4370447-4370646:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5309995..5310194
location: region:5309995-5310194:1
BFO_0000051: feature:5309995-5310194:1:region
SIO_000974: 72bdd48d-c475-446a-98d1-a2458b768abf

position:5309995:1
position: 5309995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5310194:1
position: 5310194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72bdd48d-c475-446a-98d1-a2458b768abf
SIO_000300: 1
SIO_000628: feature:5309995-5310194:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7450074..7450273
location: region:7450074-7450273:1
BFO_0000051: feature:7450074-7450273:1:region
SIO_000974: c5deb1a0-416c-47cf-af3d-280cc756e918

position:7450074:1
position: 7450074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7450273:1
position: 7450273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5deb1a0-416c-47cf-af3d-280cc756e918
SIO_000300: 1
SIO_000628: feature:7450074-7450273:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7503155..7503354
location: region:7503155-7503354:1
BFO_0000051: feature:7503155-7503354:1:region
SIO_000974: 1c7f3450-cf19-456f-ade7-688e6463de54

position:7503155:1
position: 7503155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7503354:1
position: 7503354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c7f3450-cf19-456f-ade7-688e6463de54
SIO_000300: 1
SIO_000628: feature:7503155-7503354:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8774466..8774665
location: region:8774466-8774665:1
BFO_0000051: feature:8774466-8774665:1:region
SIO_000974: bc0e2a08-1de4-4068-83a2-82b217127025

position:8774466:1
position: 8774466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8774665:1
position: 8774665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc0e2a08-1de4-4068-83a2-82b217127025
SIO_000300: 1
SIO_000628: feature:8774466-8774665:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8878771..8878970
location: region:8878771-8878970:1
BFO_0000051: feature:8878771-8878970:1:region
SIO_000974: 026a2e1d-0dc0-4f76-8b39-63d661955892

position:8878771:1
position: 8878771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8878970:1
position: 8878970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

026a2e1d-0dc0-4f76-8b39-63d661955892
SIO_000300: 1
SIO_000628: feature:8878771-8878970:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9232595..9232794
location: region:9232595-9232794:1
BFO_0000051: feature:9232595-9232794:1:region
SIO_000974: 1d29e85e-94f1-4735-a7d8-ed487c297784

position:9232595:1
position: 9232595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9232794:1
position: 9232794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d29e85e-94f1-4735-a7d8-ed487c297784
SIO_000300: 1
SIO_000628: feature:9232595-9232794:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10395292..10395491
location: region:10395292-10395491:1
BFO_0000051: feature:10395292-10395491:1:region
SIO_000974: 97706a84-ff91-4854-9a60-ddf1d481ba52

position:10395292:1
position: 10395292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10395491:1
position: 10395491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97706a84-ff91-4854-9a60-ddf1d481ba52
SIO_000300: 1
SIO_000628: feature:10395292-10395491:1:region

Eupithecia centaureata genome assembly, chromosome: 22.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 22.
sequence version: OX155697.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11999804
topology: linear
RO_0000086: SO_0000987
location: 1..11999804
location: region:1-11999804:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11999804:1
position: 11999804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11999804:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1207307..1207506
location: region:1207307-1207506:1
BFO_0000051: feature:1207307-1207506:1:region
SIO_000974: 1eed7771-b747-4ea8-ae66-ca9091012b83

position:1207307:1
position: 1207307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207506:1
position: 1207506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1eed7771-b747-4ea8-ae66-ca9091012b83
SIO_000300: 1
SIO_000628: feature:1207307-1207506:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2373102..2373301
location: region:2373102-2373301:1
BFO_0000051: feature:2373102-2373301:1:region
SIO_000974: c018d61c-bc41-4152-8a71-98d42381f50d

position:2373102:1
position: 2373102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2373301:1
position: 2373301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c018d61c-bc41-4152-8a71-98d42381f50d
SIO_000300: 1
SIO_000628: feature:2373102-2373301:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4319106..4319305
location: region:4319106-4319305:1
BFO_0000051: feature:4319106-4319305:1:region
SIO_000974: 98793e8e-3990-4847-ae1f-faae7d396cde

position:4319106:1
position: 4319106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4319305:1
position: 4319305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

98793e8e-3990-4847-ae1f-faae7d396cde
SIO_000300: 1
SIO_000628: feature:4319106-4319305:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5894212..5894411
location: region:5894212-5894411:1
BFO_0000051: feature:5894212-5894411:1:region
SIO_000974: f513b2df-07b9-41bc-94d7-f134798584ec

position:5894212:1
position: 5894212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5894411:1
position: 5894411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f513b2df-07b9-41bc-94d7-f134798584ec
SIO_000300: 1
SIO_000628: feature:5894212-5894411:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6618002..6618201
location: region:6618002-6618201:1
BFO_0000051: feature:6618002-6618201:1:region
SIO_000974: efb05089-cb30-41e1-bff3-d0bbb6568945

position:6618002:1
position: 6618002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6618201:1
position: 6618201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efb05089-cb30-41e1-bff3-d0bbb6568945
SIO_000300: 1
SIO_000628: feature:6618002-6618201:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6871713..6871912
location: region:6871713-6871912:1
BFO_0000051: feature:6871713-6871912:1:region
SIO_000974: 696d886c-d951-462a-8715-d07e9e46e12f

position:6871713:1
position: 6871713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6871912:1
position: 6871912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

696d886c-d951-462a-8715-d07e9e46e12f
SIO_000300: 1
SIO_000628: feature:6871713-6871912:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7303913..7304112
location: region:7303913-7304112:1
BFO_0000051: feature:7303913-7304112:1:region
SIO_000974: 31e8a086-d77d-4e24-ab6f-7be64cc2e49d

position:7303913:1
position: 7303913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7304112:1
position: 7304112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31e8a086-d77d-4e24-ab6f-7be64cc2e49d
SIO_000300: 1
SIO_000628: feature:7303913-7304112:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7376785..7376984
location: region:7376785-7376984:1
BFO_0000051: feature:7376785-7376984:1:region
SIO_000974: 0ed85fe9-ae8e-4c71-8164-dae0ee95c780

position:7376785:1
position: 7376785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7376984:1
position: 7376984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0ed85fe9-ae8e-4c71-8164-dae0ee95c780
SIO_000300: 1
SIO_000628: feature:7376785-7376984:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7429385..7429584
location: region:7429385-7429584:1
BFO_0000051: feature:7429385-7429584:1:region
SIO_000974: 26b87779-abc0-4eb3-b3b3-f337e92cdfa0

position:7429385:1
position: 7429385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7429584:1
position: 7429584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26b87779-abc0-4eb3-b3b3-f337e92cdfa0
SIO_000300: 1
SIO_000628: feature:7429385-7429584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7542415..7542614
location: region:7542415-7542614:1
BFO_0000051: feature:7542415-7542614:1:region
SIO_000974: a809c9ac-17eb-455d-88f9-9770a4ccc1d1

position:7542415:1
position: 7542415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7542614:1
position: 7542614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a809c9ac-17eb-455d-88f9-9770a4ccc1d1
SIO_000300: 1
SIO_000628: feature:7542415-7542614:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8062325..8062524
location: region:8062325-8062524:1
BFO_0000051: feature:8062325-8062524:1:region
SIO_000974: 3a53d71c-85ca-4a47-a5fa-45dea1b9ba27

position:8062325:1
position: 8062325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8062524:1
position: 8062524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a53d71c-85ca-4a47-a5fa-45dea1b9ba27
SIO_000300: 1
SIO_000628: feature:8062325-8062524:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9614442..9614641
location: region:9614442-9614641:1
BFO_0000051: feature:9614442-9614641:1:region
SIO_000974: e26d92f1-5544-442f-a554-65e6b5dc287a

position:9614442:1
position: 9614442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9614641:1
position: 9614641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e26d92f1-5544-442f-a554-65e6b5dc287a
SIO_000300: 1
SIO_000628: feature:9614442-9614641:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9969005..9969204
location: region:9969005-9969204:1
BFO_0000051: feature:9969005-9969204:1:region
SIO_000974: 2b95e538-82e3-428d-b99c-3ce0db7980d5

position:9969005:1
position: 9969005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9969204:1
position: 9969204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b95e538-82e3-428d-b99c-3ce0db7980d5
SIO_000300: 1
SIO_000628: feature:9969005-9969204:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11123107..11123306
location: region:11123107-11123306:1
BFO_0000051: feature:11123107-11123306:1:region
SIO_000974: 8f3dbde7-fd40-4c07-b74c-08497f597e5e

position:11123107:1
position: 11123107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11123306:1
position: 11123306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8f3dbde7-fd40-4c07-b74c-08497f597e5e
SIO_000300: 1
SIO_000628: feature:11123107-11123306:1:region

Eupithecia centaureata genome assembly, chromosome: 23.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 23.
sequence version: OX155698.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11862878
topology: linear
RO_0000086: SO_0000987
location: 1..11862878
location: region:1-11862878:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11862878:1
position: 11862878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11862878:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1166001..1166200
location: region:1166001-1166200:1
BFO_0000051: feature:1166001-1166200:1:region
SIO_000974: e7dd7461-a482-4a9a-8d84-52b545f78b98

position:1166001:1
position: 1166001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1166200:1
position: 1166200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e7dd7461-a482-4a9a-8d84-52b545f78b98
SIO_000300: 1
SIO_000628: feature:1166001-1166200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2052339..2052538
location: region:2052339-2052538:1
BFO_0000051: feature:2052339-2052538:1:region
SIO_000974: b6f64692-ff59-4e18-a5df-faf684e9a6ee

position:2052339:1
position: 2052339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2052538:1
position: 2052538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6f64692-ff59-4e18-a5df-faf684e9a6ee
SIO_000300: 1
SIO_000628: feature:2052339-2052538:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2167098..2167297
location: region:2167098-2167297:1
BFO_0000051: feature:2167098-2167297:1:region
SIO_000974: f537320d-bfdb-448c-ad22-4deb72de0417

position:2167098:1
position: 2167098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2167297:1
position: 2167297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f537320d-bfdb-448c-ad22-4deb72de0417
SIO_000300: 1
SIO_000628: feature:2167098-2167297:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2438128..2438327
location: region:2438128-2438327:1
BFO_0000051: feature:2438128-2438327:1:region
SIO_000974: 004e138a-9e5c-4aa6-81b2-9da6695c7993

position:2438128:1
position: 2438128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2438327:1
position: 2438327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

004e138a-9e5c-4aa6-81b2-9da6695c7993
SIO_000300: 1
SIO_000628: feature:2438128-2438327:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3810695..3810894
location: region:3810695-3810894:1
BFO_0000051: feature:3810695-3810894:1:region
SIO_000974: c3ed433f-7d46-44f1-9b8f-bfd51d46793e

position:3810695:1
position: 3810695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3810894:1
position: 3810894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3ed433f-7d46-44f1-9b8f-bfd51d46793e
SIO_000300: 1
SIO_000628: feature:3810695-3810894:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4255792..4255991
location: region:4255792-4255991:1
BFO_0000051: feature:4255792-4255991:1:region
SIO_000974: bac5bbd1-5d36-4617-be4a-f1c6feaeea33

position:4255792:1
position: 4255792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4255991:1
position: 4255991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bac5bbd1-5d36-4617-be4a-f1c6feaeea33
SIO_000300: 1
SIO_000628: feature:4255792-4255991:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4969091..4969290
location: region:4969091-4969290:1
BFO_0000051: feature:4969091-4969290:1:region
SIO_000974: 34193f27-294e-4a57-b44a-7f196e2dbcc8

position:4969091:1
position: 4969091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4969290:1
position: 4969290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34193f27-294e-4a57-b44a-7f196e2dbcc8
SIO_000300: 1
SIO_000628: feature:4969091-4969290:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5218356..5218555
location: region:5218356-5218555:1
BFO_0000051: feature:5218356-5218555:1:region
SIO_000974: 88d6b48d-16a1-43a4-9014-578a3e0aa461

position:5218356:1
position: 5218356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5218555:1
position: 5218555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88d6b48d-16a1-43a4-9014-578a3e0aa461
SIO_000300: 1
SIO_000628: feature:5218356-5218555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5538612..5538811
location: region:5538612-5538811:1
BFO_0000051: feature:5538612-5538811:1:region
SIO_000974: c3156c0c-329c-48c7-a2a1-a3a5e8e5d066

position:5538612:1
position: 5538612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5538811:1
position: 5538811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3156c0c-329c-48c7-a2a1-a3a5e8e5d066
SIO_000300: 1
SIO_000628: feature:5538612-5538811:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6658073..6658272
location: region:6658073-6658272:1
BFO_0000051: feature:6658073-6658272:1:region
SIO_000974: e2e82a09-0ea8-4fc8-9a37-213a5cbcd1cf

position:6658073:1
position: 6658073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6658272:1
position: 6658272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2e82a09-0ea8-4fc8-9a37-213a5cbcd1cf
SIO_000300: 1
SIO_000628: feature:6658073-6658272:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7305037..7305236
location: region:7305037-7305236:1
BFO_0000051: feature:7305037-7305236:1:region
SIO_000974: 6d7cfdab-e0d0-4c62-a5ee-3d12cc191e13

position:7305037:1
position: 7305037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7305236:1
position: 7305236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d7cfdab-e0d0-4c62-a5ee-3d12cc191e13
SIO_000300: 1
SIO_000628: feature:7305037-7305236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8695461..8695660
location: region:8695461-8695660:1
BFO_0000051: feature:8695461-8695660:1:region
SIO_000974: 6caebc59-35ed-471f-a088-2130687c3e8a

position:8695461:1
position: 8695461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8695660:1
position: 8695660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6caebc59-35ed-471f-a088-2130687c3e8a
SIO_000300: 1
SIO_000628: feature:8695461-8695660:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8998195..8998394
location: region:8998195-8998394:1
BFO_0000051: feature:8998195-8998394:1:region
SIO_000974: fa9dba43-6db4-436e-a698-c1619e32ecec

position:8998195:1
position: 8998195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8998394:1
position: 8998394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fa9dba43-6db4-436e-a698-c1619e32ecec
SIO_000300: 1
SIO_000628: feature:8998195-8998394:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10837246..10837445
location: region:10837246-10837445:1
BFO_0000051: feature:10837246-10837445:1:region
SIO_000974: db6343e2-2814-475d-9992-c45af4613ff9

position:10837246:1
position: 10837246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10837445:1
position: 10837445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db6343e2-2814-475d-9992-c45af4613ff9
SIO_000300: 1
SIO_000628: feature:10837246-10837445:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11016350..11016549
location: region:11016350-11016549:1
BFO_0000051: feature:11016350-11016549:1:region
SIO_000974: 86a752b3-7f0b-4194-9d25-7e25fa91c7f4

position:11016350:1
position: 11016350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11016549:1
position: 11016549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86a752b3-7f0b-4194-9d25-7e25fa91c7f4
SIO_000300: 1
SIO_000628: feature:11016350-11016549:1:region

Eupithecia centaureata genome assembly, chromosome: 24.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 24.
sequence version: OX155699.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11745416
topology: linear
RO_0000086: SO_0000987
location: 1..11745416
location: region:1-11745416:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11745416:1
position: 11745416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11745416:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 745001..745200
location: region:745001-745200:1
BFO_0000051: feature:745001-745200:1:region
SIO_000974: 5b431bbf-2a36-4bc3-9105-3a811e34c702

position:745001:1
position: 745001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:745200:1
position: 745200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b431bbf-2a36-4bc3-9105-3a811e34c702
SIO_000300: 1
SIO_000628: feature:745001-745200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 854517..854716
location: region:854517-854716:1
BFO_0000051: feature:854517-854716:1:region
SIO_000974: ffa8f491-a6eb-479b-b0e5-7fd5a0f64be6

position:854517:1
position: 854517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:854716:1
position: 854716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ffa8f491-a6eb-479b-b0e5-7fd5a0f64be6
SIO_000300: 1
SIO_000628: feature:854517-854716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1333630..1333829
location: region:1333630-1333829:1
BFO_0000051: feature:1333630-1333829:1:region
SIO_000974: 960fea4d-660d-4d71-8220-2c5994ec6f4d

position:1333630:1
position: 1333630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1333829:1
position: 1333829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

960fea4d-660d-4d71-8220-2c5994ec6f4d
SIO_000300: 1
SIO_000628: feature:1333630-1333829:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2824782..2824981
location: region:2824782-2824981:1
BFO_0000051: feature:2824782-2824981:1:region
SIO_000974: fc00b5c8-c672-4bef-b244-a98a684706e9

position:2824782:1
position: 2824782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2824981:1
position: 2824981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc00b5c8-c672-4bef-b244-a98a684706e9
SIO_000300: 1
SIO_000628: feature:2824782-2824981:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2957869..2958068
location: region:2957869-2958068:1
BFO_0000051: feature:2957869-2958068:1:region
SIO_000974: 81314c5b-bd5a-4d09-96d6-e7c9ad676093

position:2957869:1
position: 2957869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2958068:1
position: 2958068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

81314c5b-bd5a-4d09-96d6-e7c9ad676093
SIO_000300: 1
SIO_000628: feature:2957869-2958068:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3058854..3059053
location: region:3058854-3059053:1
BFO_0000051: feature:3058854-3059053:1:region
SIO_000974: 8c59cf36-4383-4a3f-b348-11d0c95a9308

position:3058854:1
position: 3058854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3059053:1
position: 3059053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c59cf36-4383-4a3f-b348-11d0c95a9308
SIO_000300: 1
SIO_000628: feature:3058854-3059053:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3585333..3585532
location: region:3585333-3585532:1
BFO_0000051: feature:3585333-3585532:1:region
SIO_000974: 59f8f700-9cac-428a-9fba-e7492ccc15bd

position:3585333:1
position: 3585333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3585532:1
position: 3585532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59f8f700-9cac-428a-9fba-e7492ccc15bd
SIO_000300: 1
SIO_000628: feature:3585333-3585532:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3837877..3838076
location: region:3837877-3838076:1
BFO_0000051: feature:3837877-3838076:1:region
SIO_000974: db229fce-5e3e-4174-b2c5-3516569d46ee

position:3837877:1
position: 3837877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3838076:1
position: 3838076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db229fce-5e3e-4174-b2c5-3516569d46ee
SIO_000300: 1
SIO_000628: feature:3837877-3838076:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3990145..3990344
location: region:3990145-3990344:1
BFO_0000051: feature:3990145-3990344:1:region
SIO_000974: b6a08c06-6ac7-4d38-b62c-2cbe06144301

position:3990145:1
position: 3990145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3990344:1
position: 3990344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6a08c06-6ac7-4d38-b62c-2cbe06144301
SIO_000300: 1
SIO_000628: feature:3990145-3990344:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4215467..4215666
location: region:4215467-4215666:1
BFO_0000051: feature:4215467-4215666:1:region
SIO_000974: dcc8d8d5-6a65-426f-a6ed-ec51b66dcb63

position:4215467:1
position: 4215467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4215666:1
position: 4215666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dcc8d8d5-6a65-426f-a6ed-ec51b66dcb63
SIO_000300: 1
SIO_000628: feature:4215467-4215666:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4325247..4325446
location: region:4325247-4325446:1
BFO_0000051: feature:4325247-4325446:1:region
SIO_000974: 3be09a4e-7615-41ae-a84d-8843bd1a907f

position:4325247:1
position: 4325247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4325446:1
position: 4325446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3be09a4e-7615-41ae-a84d-8843bd1a907f
SIO_000300: 1
SIO_000628: feature:4325247-4325446:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4775463..4775662
location: region:4775463-4775662:1
BFO_0000051: feature:4775463-4775662:1:region
SIO_000974: 2daaca9b-3fb8-4664-b045-7ef27b365de4

position:4775463:1
position: 4775463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4775662:1
position: 4775662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2daaca9b-3fb8-4664-b045-7ef27b365de4
SIO_000300: 1
SIO_000628: feature:4775463-4775662:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4911743..4911942
location: region:4911743-4911942:1
BFO_0000051: feature:4911743-4911942:1:region
SIO_000974: 5999e897-8a8e-437b-b999-672ea125a637

position:4911743:1
position: 4911743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4911942:1
position: 4911942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5999e897-8a8e-437b-b999-672ea125a637
SIO_000300: 1
SIO_000628: feature:4911743-4911942:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5192901..5193100
location: region:5192901-5193100:1
BFO_0000051: feature:5192901-5193100:1:region
SIO_000974: a98dc38f-8b52-4d0e-af17-88754caf7170

position:5192901:1
position: 5192901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5193100:1
position: 5193100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a98dc38f-8b52-4d0e-af17-88754caf7170
SIO_000300: 1
SIO_000628: feature:5192901-5193100:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5668204..5668403
location: region:5668204-5668403:1
BFO_0000051: feature:5668204-5668403:1:region
SIO_000974: df6e8fa2-7308-4f7b-8d4f-f3ca567cbbf0

position:5668204:1
position: 5668204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5668403:1
position: 5668403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df6e8fa2-7308-4f7b-8d4f-f3ca567cbbf0
SIO_000300: 1
SIO_000628: feature:5668204-5668403:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5738320..5738519
location: region:5738320-5738519:1
BFO_0000051: feature:5738320-5738519:1:region
SIO_000974: 10af40c7-1c9e-4116-97ad-c1d5490d6afd

position:5738320:1
position: 5738320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5738519:1
position: 5738519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10af40c7-1c9e-4116-97ad-c1d5490d6afd
SIO_000300: 1
SIO_000628: feature:5738320-5738519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6270523..6270722
location: region:6270523-6270722:1
BFO_0000051: feature:6270523-6270722:1:region
SIO_000974: 1681dd62-b8e4-42b9-99c5-906440cc600a

position:6270523:1
position: 6270523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6270722:1
position: 6270722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1681dd62-b8e4-42b9-99c5-906440cc600a
SIO_000300: 1
SIO_000628: feature:6270523-6270722:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6425454..6425653
location: region:6425454-6425653:1
BFO_0000051: feature:6425454-6425653:1:region
SIO_000974: 750d3747-ee2e-4d80-9e5d-8fbd32a6cc4a

position:6425454:1
position: 6425454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6425653:1
position: 6425653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

750d3747-ee2e-4d80-9e5d-8fbd32a6cc4a
SIO_000300: 1
SIO_000628: feature:6425454-6425653:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6729654..6729853
location: region:6729654-6729853:1
BFO_0000051: feature:6729654-6729853:1:region
SIO_000974: 687a5a7d-84b9-4076-8ab3-c6307fd23865

position:6729654:1
position: 6729654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6729853:1
position: 6729853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

687a5a7d-84b9-4076-8ab3-c6307fd23865
SIO_000300: 1
SIO_000628: feature:6729654-6729853:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10948217..10948416
location: region:10948217-10948416:1
BFO_0000051: feature:10948217-10948416:1:region
SIO_000974: e287d11b-af65-4295-81ec-9962c035d2a8

position:10948217:1
position: 10948217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10948416:1
position: 10948416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e287d11b-af65-4295-81ec-9962c035d2a8
SIO_000300: 1
SIO_000628: feature:10948217-10948416:1:region

Eupithecia centaureata genome assembly, chromosome: 25.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 25.
sequence version: OX155700.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11425182
topology: linear
RO_0000086: SO_0000987
location: 1..11425182
location: region:1-11425182:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11425182:1
position: 11425182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11425182:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 735001..735200
location: region:735001-735200:1
BFO_0000051: feature:735001-735200:1:region
SIO_000974: f69d4daf-dc2d-4025-a369-01ebe2d12e7b

position:735001:1
position: 735001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:735200:1
position: 735200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f69d4daf-dc2d-4025-a369-01ebe2d12e7b
SIO_000300: 1
SIO_000628: feature:735001-735200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1882807..1883006
location: region:1882807-1883006:1
BFO_0000051: feature:1882807-1883006:1:region
SIO_000974: 876b6efd-7b1b-4d08-918e-8bec3f0dd9d1

position:1882807:1
position: 1882807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1883006:1
position: 1883006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

876b6efd-7b1b-4d08-918e-8bec3f0dd9d1
SIO_000300: 1
SIO_000628: feature:1882807-1883006:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2585803..2586002
location: region:2585803-2586002:1
BFO_0000051: feature:2585803-2586002:1:region
SIO_000974: a40886f3-7126-42a5-9a3b-4e40dbf980dd

position:2585803:1
position: 2585803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2586002:1
position: 2586002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a40886f3-7126-42a5-9a3b-4e40dbf980dd
SIO_000300: 1
SIO_000628: feature:2585803-2586002:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3332283..3332482
location: region:3332283-3332482:1
BFO_0000051: feature:3332283-3332482:1:region
SIO_000974: f6249f18-a1bb-4119-b866-12a160973692

position:3332283:1
position: 3332283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3332482:1
position: 3332482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6249f18-a1bb-4119-b866-12a160973692
SIO_000300: 1
SIO_000628: feature:3332283-3332482:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3979793..3979992
location: region:3979793-3979992:1
BFO_0000051: feature:3979793-3979992:1:region
SIO_000974: b4e0e458-2235-4e53-be64-60ed8fcc5523

position:3979793:1
position: 3979793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3979992:1
position: 3979992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4e0e458-2235-4e53-be64-60ed8fcc5523
SIO_000300: 1
SIO_000628: feature:3979793-3979992:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4007523..4007722
location: region:4007523-4007722:1
BFO_0000051: feature:4007523-4007722:1:region
SIO_000974: cde86c0b-2528-4457-9a37-941016b5bbf7

position:4007523:1
position: 4007523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4007722:1
position: 4007722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cde86c0b-2528-4457-9a37-941016b5bbf7
SIO_000300: 1
SIO_000628: feature:4007523-4007722:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7040193..7040392
location: region:7040193-7040392:1
BFO_0000051: feature:7040193-7040392:1:region
SIO_000974: df4ce2a6-a74e-4054-ae50-dca2c39c134d

position:7040193:1
position: 7040193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7040392:1
position: 7040392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df4ce2a6-a74e-4054-ae50-dca2c39c134d
SIO_000300: 1
SIO_000628: feature:7040193-7040392:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7646530..7646729
location: region:7646530-7646729:1
BFO_0000051: feature:7646530-7646729:1:region
SIO_000974: 5a2d488f-e815-410c-b5c8-67d508b94308

position:7646530:1
position: 7646530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7646729:1
position: 7646729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7646530-7646729:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9262307..9262506
location: region:9262307-9262506:1
BFO_0000051: feature:9262307-9262506:1:region
SIO_000974: 7b187b70-6f50-4443-8af5-c920349bedd1

position:9262307:1
position: 9262307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9262506:1
position: 9262506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b187b70-6f50-4443-8af5-c920349bedd1
SIO_000300: 1
SIO_000628: feature:9262307-9262506:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10008240..10008439
location: region:10008240-10008439:1
BFO_0000051: feature:10008240-10008439:1:region
SIO_000974: f957b0ef-1e26-4746-9dff-4d1cae1cc084

position:10008240:1
position: 10008240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10008439:1
position: 10008439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f957b0ef-1e26-4746-9dff-4d1cae1cc084
SIO_000300: 1
SIO_000628: feature:10008240-10008439:1:region

Eupithecia centaureata genome assembly, chromosome: 26.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 26.
sequence version: OX155701.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10657957
topology: linear
RO_0000086: SO_0000987
location: 1..10657957
location: region:1-10657957:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10657957:1
position: 10657957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10657957:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1462001..1462200
location: region:1462001-1462200:1
BFO_0000051: feature:1462001-1462200:1:region
SIO_000974: 22f407cb-bbec-4745-bffa-9f3a9d0e318b

position:1462001:1
position: 1462001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1462200:1
position: 1462200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22f407cb-bbec-4745-bffa-9f3a9d0e318b
SIO_000300: 1
SIO_000628: feature:1462001-1462200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1673573..1673772
location: region:1673573-1673772:1
BFO_0000051: feature:1673573-1673772:1:region
SIO_000974: 0539a0d1-300c-490c-8465-7cd48efd47cd

position:1673573:1
position: 1673573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1673772:1
position: 1673772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0539a0d1-300c-490c-8465-7cd48efd47cd
SIO_000300: 1
SIO_000628: feature:1673573-1673772:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1718434..1718633
location: region:1718434-1718633:1
BFO_0000051: feature:1718434-1718633:1:region
SIO_000974: 38312792-c621-470b-8948-80c1ea16750c

position:1718434:1
position: 1718434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1718633:1
position: 1718633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38312792-c621-470b-8948-80c1ea16750c
SIO_000300: 1
SIO_000628: feature:1718434-1718633:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1828866..1829065
location: region:1828866-1829065:1
BFO_0000051: feature:1828866-1829065:1:region
SIO_000974: 9c32855a-64ea-45dd-a8b8-205b95a16186

position:1828866:1
position: 1828866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1829065:1
position: 1829065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c32855a-64ea-45dd-a8b8-205b95a16186
SIO_000300: 1
SIO_000628: feature:1828866-1829065:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2436089..2436288
location: region:2436089-2436288:1
BFO_0000051: feature:2436089-2436288:1:region
SIO_000974: 6f7a00d7-068c-4d68-a37a-d79808ed036e

position:2436089:1
position: 2436089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2436288:1
position: 2436288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6f7a00d7-068c-4d68-a37a-d79808ed036e
SIO_000300: 1
SIO_000628: feature:2436089-2436288:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3322630..3322829
location: region:3322630-3322829:1
BFO_0000051: feature:3322630-3322829:1:region
SIO_000974: 97788c83-931a-4a70-8bac-4fb51b8e943d

position:3322630:1
position: 3322630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3322829:1
position: 3322829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97788c83-931a-4a70-8bac-4fb51b8e943d
SIO_000300: 1
SIO_000628: feature:3322630-3322829:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3980867..3981066
location: region:3980867-3981066:1
BFO_0000051: feature:3980867-3981066:1:region
SIO_000974: bb511c30-7ac7-405a-8d85-46d54e156a54

position:3980867:1
position: 3980867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3981066:1
position: 3981066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb511c30-7ac7-405a-8d85-46d54e156a54
SIO_000300: 1
SIO_000628: feature:3980867-3981066:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4884893..4885092
location: region:4884893-4885092:1
BFO_0000051: feature:4884893-4885092:1:region
SIO_000974: aa5e4068-b51f-468a-8ddb-659fe9bfd703

position:4884893:1
position: 4884893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4885092:1
position: 4885092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aa5e4068-b51f-468a-8ddb-659fe9bfd703
SIO_000300: 1
SIO_000628: feature:4884893-4885092:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6205357..6205556
location: region:6205357-6205556:1
BFO_0000051: feature:6205357-6205556:1:region
SIO_000974: b90b0b15-e0b0-47f1-8b5f-09d109c46f7a

position:6205357:1
position: 6205357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6205556:1
position: 6205556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b90b0b15-e0b0-47f1-8b5f-09d109c46f7a
SIO_000300: 1
SIO_000628: feature:6205357-6205556:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6322420..6322619
location: region:6322420-6322619:1
BFO_0000051: feature:6322420-6322619:1:region
SIO_000974: 969871a0-e94f-4f2e-9f0e-e6ae8ceb510f

position:6322420:1
position: 6322420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6322619:1
position: 6322619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6322420-6322619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7053103..7053302
location: region:7053103-7053302:1
BFO_0000051: feature:7053103-7053302:1:region
SIO_000974: 83eceded-6947-4e8b-ba16-4589083dd7ed

position:7053103:1
position: 7053103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7053302:1
position: 7053302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

83eceded-6947-4e8b-ba16-4589083dd7ed
SIO_000300: 1
SIO_000628: feature:7053103-7053302:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7843956..7844155
location: region:7843956-7844155:1
BFO_0000051: feature:7843956-7844155:1:region
SIO_000974: 9c2be353-bcdd-411f-92c4-1a56c2d72752

position:7843956:1
position: 7843956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7844155:1
position: 7844155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c2be353-bcdd-411f-92c4-1a56c2d72752
SIO_000300: 1
SIO_000628: feature:7843956-7844155:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9468150..9468349
location: region:9468150-9468349:1
BFO_0000051: feature:9468150-9468349:1:region
SIO_000974: a20598ff-dd2f-47fa-9469-2cabdc6ba903

position:9468150:1
position: 9468150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9468349:1
position: 9468349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a20598ff-dd2f-47fa-9469-2cabdc6ba903
SIO_000300: 1
SIO_000628: feature:9468150-9468349:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10376098..10376297
location: region:10376098-10376297:1
BFO_0000051: feature:10376098-10376297:1:region
SIO_000974: 0a8eb6be-4cc9-4e26-88bd-1a2c67ac590a

position:10376098:1
position: 10376098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10376297:1
position: 10376297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a8eb6be-4cc9-4e26-88bd-1a2c67ac590a
SIO_000300: 1
SIO_000628: feature:10376098-10376297:1:region

Eupithecia centaureata genome assembly, chromosome: 27.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 27.
sequence version: OX155702.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10400736
topology: linear
RO_0000086: SO_0000987
location: 1..10400736
location: region:1-10400736:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10400736:1
position: 10400736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10400736:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 415558..415757
location: region:415558-415757:1
BFO_0000051: feature:415558-415757:1:region
SIO_000974: 043c7cf0-4ae9-41b9-afec-edd4eb51eb49

position:415558:1
position: 415558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415757:1
position: 415757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

043c7cf0-4ae9-41b9-afec-edd4eb51eb49
SIO_000300: 1
SIO_000628: feature:415558-415757:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2013022..2013221
location: region:2013022-2013221:1
BFO_0000051: feature:2013022-2013221:1:region
SIO_000974: 62dd408b-7b1c-44bb-a127-b43032ae601a

position:2013022:1
position: 2013022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2013221:1
position: 2013221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

62dd408b-7b1c-44bb-a127-b43032ae601a
SIO_000300: 1
SIO_000628: feature:2013022-2013221:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4228563..4228762
location: region:4228563-4228762:1
BFO_0000051: feature:4228563-4228762:1:region
SIO_000974: 6cea9e46-6b1f-4cfa-9970-e729229ac67b

position:4228563:1
position: 4228563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4228762:1
position: 4228762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6cea9e46-6b1f-4cfa-9970-e729229ac67b
SIO_000300: 1
SIO_000628: feature:4228563-4228762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4354583..4354782
location: region:4354583-4354782:1
BFO_0000051: feature:4354583-4354782:1:region
SIO_000974: 4419868a-69ed-45c1-b612-93666437d5aa

position:4354583:1
position: 4354583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4354782:1
position: 4354782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4419868a-69ed-45c1-b612-93666437d5aa
SIO_000300: 1
SIO_000628: feature:4354583-4354782:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7577176..7577375
location: region:7577176-7577375:1
BFO_0000051: feature:7577176-7577375:1:region
SIO_000974: d3354981-5e27-43a9-b71b-bb4ba10688de

position:7577176:1
position: 7577176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7577375:1
position: 7577375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d3354981-5e27-43a9-b71b-bb4ba10688de
SIO_000300: 1
SIO_000628: feature:7577176-7577375:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8963569..8963768
location: region:8963569-8963768:1
BFO_0000051: feature:8963569-8963768:1:region
SIO_000974: 4f143940-e762-424d-a140-eff8befd7704

position:8963569:1
position: 8963569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8963768:1
position: 8963768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f143940-e762-424d-a140-eff8befd7704
SIO_000300: 1
SIO_000628: feature:8963569-8963768:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9347537..9347736
location: region:9347537-9347736:1
BFO_0000051: feature:9347537-9347736:1:region
SIO_000974: 4e6b3e3f-29cd-4456-9a37-117b503a89fe

position:9347537:1
position: 9347537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9347736:1
position: 9347736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e6b3e3f-29cd-4456-9a37-117b503a89fe
SIO_000300: 1
SIO_000628: feature:9347537-9347736:1:region

Eupithecia centaureata genome assembly, chromosome: 28.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 28.
sequence version: OX155703.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9086237
topology: linear
RO_0000086: SO_0000987
location: 1..9086237
location: region:1-9086237:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9086237:1
position: 9086237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9086237:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 694001..694200
location: region:694001-694200:1
BFO_0000051: feature:694001-694200:1:region
SIO_000974: a76856cf-9c57-407f-86d7-688939a7f435

position:694001:1
position: 694001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:694200:1
position: 694200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a76856cf-9c57-407f-86d7-688939a7f435
SIO_000300: 1
SIO_000628: feature:694001-694200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 874377..874576
location: region:874377-874576:1
BFO_0000051: feature:874377-874576:1:region
SIO_000974: 54e14e2b-b618-4628-a950-7db0c2ecfeb2

position:874377:1
position: 874377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:874576:1
position: 874576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:874377-874576:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1145812..1146011
location: region:1145812-1146011:1
BFO_0000051: feature:1145812-1146011:1:region
SIO_000974: 89072cab-7fb9-4eaa-9485-5111f381008c

position:1145812:1
position: 1145812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1146011:1
position: 1146011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

89072cab-7fb9-4eaa-9485-5111f381008c
SIO_000300: 1
SIO_000628: feature:1145812-1146011:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1190347..1190546
location: region:1190347-1190546:1
BFO_0000051: feature:1190347-1190546:1:region
SIO_000974: b8ff6a4d-a004-4f31-856e-e81e89196442

position:1190347:1
position: 1190347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1190546:1
position: 1190546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8ff6a4d-a004-4f31-856e-e81e89196442
SIO_000300: 1
SIO_000628: feature:1190347-1190546:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1220536..1220735
location: region:1220536-1220735:1
BFO_0000051: feature:1220536-1220735:1:region
SIO_000974: 01e46ab7-f6c1-43a2-adc4-a177b07afd7c

position:1220536:1
position: 1220536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1220735:1
position: 1220735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1220536-1220735:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2036529..2036728
location: region:2036529-2036728:1
BFO_0000051: feature:2036529-2036728:1:region
SIO_000974: bc572843-19c3-4f1f-908e-246f2f5bfb8d

position:2036529:1
position: 2036529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2036728:1
position: 2036728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc572843-19c3-4f1f-908e-246f2f5bfb8d
SIO_000300: 1
SIO_000628: feature:2036529-2036728:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2193001..2193200
location: region:2193001-2193200:1
BFO_0000051: feature:2193001-2193200:1:region
SIO_000974: 24589383-6704-431a-9d58-fbcf62bae07b

position:2193001:1
position: 2193001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2193200:1
position: 2193200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24589383-6704-431a-9d58-fbcf62bae07b
SIO_000300: 1
SIO_000628: feature:2193001-2193200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2585444..2585643
location: region:2585444-2585643:1
BFO_0000051: feature:2585444-2585643:1:region
SIO_000974: 75e4b9fc-327f-456f-aa97-b71465a31e5f

position:2585444:1
position: 2585444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2585643:1
position: 2585643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2585444-2585643:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3316199..3316398
location: region:3316199-3316398:1
BFO_0000051: feature:3316199-3316398:1:region
SIO_000974: e23030e0-8cf0-42df-b45d-f5a685b363a8

position:3316199:1
position: 3316199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3316398:1
position: 3316398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e23030e0-8cf0-42df-b45d-f5a685b363a8
SIO_000300: 1
SIO_000628: feature:3316199-3316398:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4464147..4464346
location: region:4464147-4464346:1
BFO_0000051: feature:4464147-4464346:1:region
SIO_000974: 20f2a88e-e48d-4b9d-a5e2-3c3ef9f9f42a

position:4464147:1
position: 4464147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4464346:1
position: 4464346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4464147-4464346:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4581168..4581367
location: region:4581168-4581367:1
BFO_0000051: feature:4581168-4581367:1:region
SIO_000974: 8ba5eda9-efd5-45af-bbb7-ce8f047bc319

position:4581168:1
position: 4581168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4581367:1
position: 4581367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4581168-4581367:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5693968..5694167
location: region:5693968-5694167:1
BFO_0000051: feature:5693968-5694167:1:region
SIO_000974: c4945457-c69e-4e74-a295-3c28a5b2d6df

position:5693968:1
position: 5693968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5694167:1
position: 5694167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5693968-5694167:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6028004..6028203
location: region:6028004-6028203:1
BFO_0000051: feature:6028004-6028203:1:region
SIO_000974: 65fa0801-2cb1-40ab-9602-3c6addf244a8

position:6028004:1
position: 6028004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6028203:1
position: 6028203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65fa0801-2cb1-40ab-9602-3c6addf244a8
SIO_000300: 1
SIO_000628: feature:6028004-6028203:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6099679..6099878
location: region:6099679-6099878:1
BFO_0000051: feature:6099679-6099878:1:region
SIO_000974: db66352c-eaf2-4e0d-8972-1e47f31ec8e1

position:6099679:1
position: 6099679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6099878:1
position: 6099878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6099679-6099878:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6899114..6899313
location: region:6899114-6899313:1
BFO_0000051: feature:6899114-6899313:1:region
SIO_000974: 46e27113-fc6a-42ad-9f17-deb9255c4eb8

position:6899114:1
position: 6899114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6899313:1
position: 6899313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

46e27113-fc6a-42ad-9f17-deb9255c4eb8
SIO_000300: 1
SIO_000628: feature:6899114-6899313:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8319567..8319766
location: region:8319567-8319766:1
BFO_0000051: feature:8319567-8319766:1:region
SIO_000974: 7a0f1a05-27a5-4a43-ab11-d48dcdde3c97

position:8319567:1
position: 8319567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8319766:1
position: 8319766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a0f1a05-27a5-4a43-ab11-d48dcdde3c97
SIO_000300: 1
SIO_000628: feature:8319567-8319766:1:region

Eupithecia centaureata genome assembly, chromosome: 29.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 29.
sequence version: OX155704.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8680135
topology: linear
RO_0000086: SO_0000987
location: 1..8680135
location: region:1-8680135:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8680135:1
position: 8680135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8680135:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 940465..940664
location: region:940465-940664:1
BFO_0000051: feature:940465-940664:1:region
SIO_000974: b415b970-3bbd-405c-948b-71391d60021a

position:940465:1
position: 940465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:940664:1
position: 940664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b415b970-3bbd-405c-948b-71391d60021a
SIO_000300: 1
SIO_000628: feature:940465-940664:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1551472..1551671
location: region:1551472-1551671:1
BFO_0000051: feature:1551472-1551671:1:region
SIO_000974: 5cd42dcd-5fdb-4e36-ac6e-4c7aa62a5164

position:1551472:1
position: 1551472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1551671:1
position: 1551671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5cd42dcd-5fdb-4e36-ac6e-4c7aa62a5164
SIO_000300: 1
SIO_000628: feature:1551472-1551671:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4053827..4054026
location: region:4053827-4054026:1
BFO_0000051: feature:4053827-4054026:1:region
SIO_000974: e68f5ea5-3c2e-469e-a907-92de8f85ea22

position:4053827:1
position: 4053827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4054026:1
position: 4054026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e68f5ea5-3c2e-469e-a907-92de8f85ea22
SIO_000300: 1
SIO_000628: feature:4053827-4054026:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4216608..4216807
location: region:4216608-4216807:1
BFO_0000051: feature:4216608-4216807:1:region
SIO_000974: ee449b8c-508f-40ac-8927-a96d6772186b

position:4216608:1
position: 4216608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4216807:1
position: 4216807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee449b8c-508f-40ac-8927-a96d6772186b
SIO_000300: 1
SIO_000628: feature:4216608-4216807:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5236758..5236957
location: region:5236758-5236957:1
BFO_0000051: feature:5236758-5236957:1:region
SIO_000974: 2a6d265c-60bd-442d-8cdf-e87b7db3089b

position:5236758:1
position: 5236758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5236957:1
position: 5236957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a6d265c-60bd-442d-8cdf-e87b7db3089b
SIO_000300: 1
SIO_000628: feature:5236758-5236957:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6464233..6464432
location: region:6464233-6464432:1
BFO_0000051: feature:6464233-6464432:1:region
SIO_000974: f4ed86e7-4e2a-4224-a397-f9533ed8bb3b

position:6464233:1
position: 6464233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6464432:1
position: 6464432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f4ed86e7-4e2a-4224-a397-f9533ed8bb3b
SIO_000300: 1
SIO_000628: feature:6464233-6464432:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7083936..7084135
location: region:7083936-7084135:1
BFO_0000051: feature:7083936-7084135:1:region
SIO_000974: 94f4c9ad-8050-4b32-b02f-fb482e8198d5

position:7083936:1
position: 7083936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7084135:1
position: 7084135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94f4c9ad-8050-4b32-b02f-fb482e8198d5
SIO_000300: 1
SIO_000628: feature:7083936-7084135:1:region

Eupithecia centaureata genome assembly, chromosome: 30.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 30.
sequence version: OX155705.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8435260
topology: linear
RO_0000086: SO_0000987
location: 1..8435260
location: region:1-8435260:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8435260:1
position: 8435260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8435260:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 844001..844200
location: region:844001-844200:1
BFO_0000051: feature:844001-844200:1:region
SIO_000974: fadf7e60-9c84-4bba-a98f-5c395bc3bc38

position:844001:1
position: 844001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:844200:1
position: 844200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fadf7e60-9c84-4bba-a98f-5c395bc3bc38
SIO_000300: 1
SIO_000628: feature:844001-844200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1167535..1167734
location: region:1167535-1167734:1
BFO_0000051: feature:1167535-1167734:1:region
SIO_000974: 3cf163c8-a099-479d-9bc3-f34a631e9505

position:1167535:1
position: 1167535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1167734:1
position: 1167734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1167535-1167734:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3573612..3573811
location: region:3573612-3573811:1
BFO_0000051: feature:3573612-3573811:1:region
SIO_000974: a19f325f-4adb-4a53-b231-1aa39e473584

position:3573612:1
position: 3573612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3573811:1
position: 3573811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a19f325f-4adb-4a53-b231-1aa39e473584
SIO_000300: 1
SIO_000628: feature:3573612-3573811:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4270783..4270982
location: region:4270783-4270982:1
BFO_0000051: feature:4270783-4270982:1:region
SIO_000974: b91e4b88-e1e5-44cc-bf88-e5796eadc853

position:4270783:1
position: 4270783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4270982:1
position: 4270982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b91e4b88-e1e5-44cc-bf88-e5796eadc853
SIO_000300: 1
SIO_000628: feature:4270783-4270982:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6649732..6649931
location: region:6649732-6649931:1
BFO_0000051: feature:6649732-6649931:1:region
SIO_000974: da3bb11f-cb96-4c63-a366-4427f93801e0

position:6649732:1
position: 6649732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6649931:1
position: 6649931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6649732-6649931:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6893047..6893246
location: region:6893047-6893246:1
BFO_0000051: feature:6893047-6893246:1:region
SIO_000974: c14bcfbe-13c8-4d21-89fc-cfad5ede909b

position:6893047:1
position: 6893047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6893246:1
position: 6893246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c14bcfbe-13c8-4d21-89fc-cfad5ede909b
SIO_000300: 1
SIO_000628: feature:6893047-6893246:1:region

Eupithecia centaureata genome assembly, chromosome: 31.
type: Entry
definition: Eupithecia centaureata genome assembly, chromosome: 31.
sequence version: OX155706.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8404350
topology: linear
RO_0000086: SO_0000987
location: 1..8404350
location: region:1-8404350:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8404350:1
position: 8404350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8404350:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
chromosome: 31
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 320001..320200
location: region:320001-320200:1
BFO_0000051: feature:320001-320200:1:region
SIO_000974: bd6582b6-99dd-4c91-bf0f-ac9281be8d6e

position:320001:1
position: 320001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320200:1
position: 320200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd6582b6-99dd-4c91-bf0f-ac9281be8d6e
SIO_000300: 1
SIO_000628: feature:320001-320200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1430287..1430486
location: region:1430287-1430486:1
BFO_0000051: feature:1430287-1430486:1:region
SIO_000974: 604b2dda-7f3b-432b-86ab-4f054ca73e5d

position:1430287:1
position: 1430287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1430486:1
position: 1430486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1430287-1430486:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1606058..1606257
location: region:1606058-1606257:1
BFO_0000051: feature:1606058-1606257:1:region
SIO_000974: e508db64-6830-4d38-8d49-1e8a4d292797

position:1606058:1
position: 1606058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1606257:1
position: 1606257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e508db64-6830-4d38-8d49-1e8a4d292797
SIO_000300: 1
SIO_000628: feature:1606058-1606257:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2495509..2495708
location: region:2495509-2495708:1
BFO_0000051: feature:2495509-2495708:1:region
SIO_000974: 79452c5c-dce3-4ac1-b70f-9ff18394a90d

position:2495509:1
position: 2495509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2495708:1
position: 2495708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

79452c5c-dce3-4ac1-b70f-9ff18394a90d
SIO_000300: 1
SIO_000628: feature:2495509-2495708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2777709..2777908
location: region:2777709-2777908:1
BFO_0000051: feature:2777709-2777908:1:region
SIO_000974: ac512d7f-d742-412e-8bc0-826283088c06

position:2777709:1
position: 2777709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2777908:1
position: 2777908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac512d7f-d742-412e-8bc0-826283088c06
SIO_000300: 1
SIO_000628: feature:2777709-2777908:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2949646..2949845
location: region:2949646-2949845:1
BFO_0000051: feature:2949646-2949845:1:region
SIO_000974: 5f0e1603-6c0c-46ce-9bc5-ab2e30c858b5

position:2949646:1
position: 2949646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2949845:1
position: 2949845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f0e1603-6c0c-46ce-9bc5-ab2e30c858b5
SIO_000300: 1
SIO_000628: feature:2949646-2949845:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3595457..3595656
location: region:3595457-3595656:1
BFO_0000051: feature:3595457-3595656:1:region
SIO_000974: 9ab2fb9a-c53d-45f4-8a43-2ee8b7a8a77a

position:3595457:1
position: 3595457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3595656:1
position: 3595656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9ab2fb9a-c53d-45f4-8a43-2ee8b7a8a77a
SIO_000300: 1
SIO_000628: feature:3595457-3595656:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4711403..4711602
location: region:4711403-4711602:1
BFO_0000051: feature:4711403-4711602:1:region
SIO_000974: ac4c5bdf-4fe7-428a-b99b-8988acb7fb47

position:4711403:1
position: 4711403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4711602:1
position: 4711602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac4c5bdf-4fe7-428a-b99b-8988acb7fb47
SIO_000300: 1
SIO_000628: feature:4711403-4711602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5605206..5605405
location: region:5605206-5605405:1
BFO_0000051: feature:5605206-5605405:1:region
SIO_000974: 4e3da896-b867-417f-87c5-eb83ff5dab6c

position:5605206:1
position: 5605206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5605405:1
position: 5605405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e3da896-b867-417f-87c5-eb83ff5dab6c
SIO_000300: 1
SIO_000628: feature:5605206-5605405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7659128..7659327
location: region:7659128-7659327:1
BFO_0000051: feature:7659128-7659327:1:region
SIO_000974: ae2a5722-4cdb-4b36-8a80-946f4f64af30

position:7659128:1
position: 7659128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7659327:1
position: 7659327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae2a5722-4cdb-4b36-8a80-946f4f64af30
SIO_000300: 1
SIO_000628: feature:7659128-7659327:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 934844
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8132535..8132734
location: region:8132535-8132734:1
BFO_0000051: feature:8132535-8132734:1:region
SIO_000974: 1fbc04bd-f7ba-4727-9dc1-32f772f2b6b0

position:8132535:1
position: 8132535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8132734:1
position: 8132734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fbc04bd-f7ba-4727-9dc1-32f772f2b6b0
SIO_000300: 1
SIO_000628: feature:8132535-8132734:1:region

Eupithecia centaureata genome assembly, organelle: mitochondrion.
type: Entry
definition: Eupithecia centaureata genome assembly, organelle: mitochondrion.
sequence version: OX155707.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: mitochondrion Eupithecia centaureata
organism: Eupithecia centaureata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Eupithecia.
reference: 1
comment: The assembly ilEupCent1.1 is based on 22x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15302
topology: linear
RO_0000086: SO_0000987
location: 1..15302
location: region:1-15302:1
RO_0002162: 934844

1
journal: Submitted (24-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15302:1
position: 15302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15302:1:source
BFO_0000050: sequence
organism: Eupithecia centaureata
organelle: mitochondrion
mol type: genomic DNA

Phosphuga atrata genome assembly, chromosome: 1.
type: Entry
definition: Phosphuga atrata genome assembly, chromosome: 1.
sequence version: OX155892.1
sequence date: 2022-07-09
sequence: sequence
division: INV
source: Phosphuga atrata
organism: Phosphuga atrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Silphidae; Silphinae; Phosphuga.
reference: 1
comment: The assembly icSilAtra2.1 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 111445931
topology: linear
RO_0000086: SO_0000987
location: 1..111445931
location: region:1-111445931:1
RO_0002162: 414934

1
journal: Submitted (22-JUN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111445931:1
position: 111445931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-111445931:1:source
BFO_0000050: sequence
organism: Phosphuga atrata
chromosome: 1
mol type: genomic DNA

414934
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4843884..4844083
location: region:4843884-4844083:1
BFO_0000051: feature:4843884-4844083:1:region
SIO_000974: 9850acd6-d2e1-4824-8351-9e92595d4bb5

position:4843884:1
position: 4843884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4844083:1
position: 4844083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9850acd6-d2e1-4824-8351-9e92595d4bb5
SIO_000300: 1
SIO_000628: feature:4843884-4844083:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5483195..5483394
location: region:5483195-5483394:1
BFO_0000051: feature:5483195-5483394:1:region
SIO_000974: f17cb4ed-11a7-4408-ab0f-f3e593afbbf9

position:5483195:1
position: 5483195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5483394:1
position: 5483394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f17cb4ed-11a7-4408-ab0f-f3e593afbbf9
SIO_000300: 1
SIO_000628: feature:5483195-5483394:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6640708..6640907
location: region:6640708-6640907:1
BFO_0000051: feature:6640708-6640907:1:region
SIO_000974: 8d7a6536-b40a-4cfb-a588-208eec46d392

position:6640708:1
position: 6640708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6640907:1
position: 6640907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d7a6536-b40a-4cfb-a588-208eec46d392
SIO_000300: 1
SIO_000628: feature:6640708-6640907:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6856908..6857107
location: region:6856908-6857107:1
BFO_0000051: feature:6856908-6857107:1:region
SIO_000974: 271c162f-5cda-46a3-8564-4813ef0377a1

position:6856908:1
position: 6856908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6857107:1
position: 6857107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

271c162f-5cda-46a3-8564-4813ef0377a1
SIO_000300: 1
SIO_000628: feature:6856908-6857107:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20249108..20249307
location: region:20249108-20249307:1
BFO_0000051: feature:20249108-20249307:1:region
SIO_000974: 4dd64449-49c8-4706-8a4a-289b8b9c72c4

position:20249108:1
position: 20249108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20249307:1
position: 20249307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4dd64449-49c8-4706-8a4a-289b8b9c72c4
SIO_000300: 1
SIO_000628: feature:20249108-20249307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25489706..25489905
location: region:25489706-25489905:1
BFO_0000051: feature:25489706-25489905:1:region
SIO_000974: 4e3b78ed-b510-4ecb-abd0-d0bbb3a0b78f

position:25489706:1
position: 25489706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25489905:1
position: 25489905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e3b78ed-b510-4ecb-abd0-d0bbb3a0b78f
SIO_000300: 1
SIO_000628: feature:25489706-25489905:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27679106..27679305
location: region:27679106-27679305:1
BFO_0000051: feature:27679106-27679305:1:region
SIO_000974: 558b16ee-d0c3-4af5-bff8-c66437e4832e

position:27679106:1
position: 27679106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27679305:1
position: 27679305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

558b16ee-d0c3-4af5-bff8-c66437e4832e
SIO_000300: 1
SIO_000628: feature:27679106-27679305:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27901831..27902030
location: region:27901831-27902030:1
BFO_0000051: feature:27901831-27902030:1:region
SIO_000974: 86ed9682-f6ac-4e70-90d3-ae4eea6f9d82

position:27901831:1
position: 27901831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27902030:1
position: 27902030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86ed9682-f6ac-4e70-90d3-ae4eea6f9d82
SIO_000300: 1
SIO_000628: feature:27901831-27902030:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31245332..31245531
location: region:31245332-31245531:1
BFO_0000051: feature:31245332-31245531:1:region
SIO_000974: ed53e829-6b6b-421a-9974-d454365555ad

position:31245332:1
position: 31245332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31245531:1
position: 31245531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ed53e829-6b6b-421a-9974-d454365555ad
SIO_000300: 1
SIO_000628: feature:31245332-31245531:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33149517..33149716
location: region:33149517-33149716:1
BFO_0000051: feature:33149517-33149716:1:region
SIO_000974: 3cf6cddb-7fc3-44fb-bf20-6e40cbe7d979

position:33149517:1
position: 33149517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33149716:1
position: 33149716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3cf6cddb-7fc3-44fb-bf20-6e40cbe7d979
SIO_000300: 1
SIO_000628: feature:33149517-33149716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38696116..38696315
location: region:38696116-38696315:1
BFO_0000051: feature:38696116-38696315:1:region
SIO_000974: d4ad9f0c-e9c4-4a4d-9b03-7013c6a2f2cd

position:38696116:1
position: 38696116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38696315:1
position: 38696315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d4ad9f0c-e9c4-4a4d-9b03-7013c6a2f2cd
SIO_000300: 1
SIO_000628: feature:38696116-38696315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39208248..39208447
location: region:39208248-39208447:1
BFO_0000051: feature:39208248-39208447:1:region
SIO_000974: aa039d11-44d6-435e-88f2-004fbdd748b5

position:39208248:1
position: 39208248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39208447:1
position: 39208447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aa039d11-44d6-435e-88f2-004fbdd748b5
SIO_000300: 1
SIO_000628: feature:39208248-39208447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40015599..40015798
location: region:40015599-40015798:1
BFO_0000051: feature:40015599-40015798:1:region
SIO_000974: 10de4e2e-2b5c-4237-a3a6-1e37875b4ccc

position:40015599:1
position: 40015599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40015798:1
position: 40015798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10de4e2e-2b5c-4237-a3a6-1e37875b4ccc
SIO_000300: 1
SIO_000628: feature:40015599-40015798:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41933126..41933325
location: region:41933126-41933325:1
BFO_0000051: feature:41933126-41933325:1:region
SIO_000974: 6fb99adf-2047-46a7-8d1e-d3050aa73779

position:41933126:1
position: 41933126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41933325:1
position: 41933325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fb99adf-2047-46a7-8d1e-d3050aa73779
SIO_000300: 1
SIO_000628: feature:41933126-41933325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42329349..42329548
location: region:42329349-42329548:1
BFO_0000051: feature:42329349-42329548:1:region
SIO_000974: e06f1f22-e5a6-4137-88ef-95b6ea83bb46

position:42329349:1
position: 42329349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42329548:1
position: 42329548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e06f1f22-e5a6-4137-88ef-95b6ea83bb46
SIO_000300: 1
SIO_000628: feature:42329349-42329548:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42449837..42450036
location: region:42449837-42450036:1
BFO_0000051: feature:42449837-42450036:1:region
SIO_000974: 65893e97-7526-41a0-bb20-e59dd0637793

position:42449837:1
position: 42449837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42450036:1
position: 42450036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65893e97-7526-41a0-bb20-e59dd0637793
SIO_000300: 1
SIO_000628: feature:42449837-42450036:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42658440..42658639
location: region:42658440-42658639:1
BFO_0000051: feature:42658440-42658639:1:region
SIO_000974: 254a0657-438d-4865-91be-fc3692da1a22

position:42658440:1
position: 42658440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42658639:1
position: 42658639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

254a0657-438d-4865-91be-fc3692da1a22
SIO_000300: 1
SIO_000628: feature:42658440-42658639:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43828856..43829055
location: region:43828856-43829055:1
BFO_0000051: feature:43828856-43829055:1:region
SIO_000974: cb39110f-d23c-4fbe-a63b-a2ce9c4b7995

position:43828856:1
position: 43828856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43829055:1
position: 43829055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb39110f-d23c-4fbe-a63b-a2ce9c4b7995
SIO_000300: 1
SIO_000628: feature:43828856-43829055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44096168..44096367
location: region:44096168-44096367:1
BFO_0000051: feature:44096168-44096367:1:region
SIO_000974: 581a9a57-bc7c-4ef0-a867-75a4a3deda96

position:44096168:1
position: 44096168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44096367:1
position: 44096367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

581a9a57-bc7c-4ef0-a867-75a4a3deda96
SIO_000300: 1
SIO_000628: feature:44096168-44096367:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44224189..44224388
location: region:44224189-44224388:1
BFO_0000051: feature:44224189-44224388:1:region
SIO_000974: b03fc967-ad67-4e1e-b2f5-d6d06ec2998e

position:44224189:1
position: 44224189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44224388:1
position: 44224388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b03fc967-ad67-4e1e-b2f5-d6d06ec2998e
SIO_000300: 1
SIO_000628: feature:44224189-44224388:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46476389..46476588
location: region:46476389-46476588:1
BFO_0000051: feature:46476389-46476588:1:region
SIO_000974: d8d1d80e-3791-4f09-bc50-bebcae25fb74

position:46476389:1
position: 46476389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46476588:1
position: 46476588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8d1d80e-3791-4f09-bc50-bebcae25fb74
SIO_000300: 1
SIO_000628: feature:46476389-46476588:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46800589..46800788
location: region:46800589-46800788:1
BFO_0000051: feature:46800589-46800788:1:region
SIO_000974: 240efcfe-5a66-4917-8a68-13fa6866cc2e

position:46800589:1
position: 46800589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46800788:1
position: 46800788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

240efcfe-5a66-4917-8a68-13fa6866cc2e
SIO_000300: 1
SIO_000628: feature:46800589-46800788:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46988124..46988323
location: region:46988124-46988323:1
BFO_0000051: feature:46988124-46988323:1:region
SIO_000974: e370ae1a-91a9-4a04-aa98-379c587fdc1f

position:46988124:1
position: 46988124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46988323:1
position: 46988323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e370ae1a-91a9-4a04-aa98-379c587fdc1f
SIO_000300: 1
SIO_000628: feature:46988124-46988323:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47236576..47236775
location: region:47236576-47236775:1
BFO_0000051: feature:47236576-47236775:1:region
SIO_000974: c60eda93-0d1d-461d-ac4d-2fbae52f2560

position:47236576:1
position: 47236576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47236775:1
position: 47236775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c60eda93-0d1d-461d-ac4d-2fbae52f2560
SIO_000300: 1
SIO_000628: feature:47236576-47236775:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47313244..47313443
location: region:47313244-47313443:1
BFO_0000051: feature:47313244-47313443:1:region
SIO_000974: 5abfc318-8eb4-45dc-80c2-c2a51e4675bb

position:47313244:1
position: 47313244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47313443:1
position: 47313443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5abfc318-8eb4-45dc-80c2-c2a51e4675bb
SIO_000300: 1
SIO_000628: feature:47313244-47313443:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47573069..47573268
location: region:47573069-47573268:1
BFO_0000051: feature:47573069-47573268:1:region
SIO_000974: cec52c88-7bc7-4926-a080-e0451ee57902

position:47573069:1
position: 47573069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47573268:1
position: 47573268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cec52c88-7bc7-4926-a080-e0451ee57902
SIO_000300: 1
SIO_000628: feature:47573069-47573268:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47930035..47930234
location: region:47930035-47930234:1
BFO_0000051: feature:47930035-47930234:1:region
SIO_000974: ceda9aa1-058d-4a62-8961-35424db49453

position:47930035:1
position: 47930035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47930234:1
position: 47930234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceda9aa1-058d-4a62-8961-35424db49453
SIO_000300: 1
SIO_000628: feature:47930035-47930234:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48037948..48038147
location: region:48037948-48038147:1
BFO_0000051: feature:48037948-48038147:1:region
SIO_000974: 1f13f727-2893-4c74-bc68-28db08560b44

position:48037948:1
position: 48037948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48038147:1
position: 48038147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f13f727-2893-4c74-bc68-28db08560b44
SIO_000300: 1
SIO_000628: feature:48037948-48038147:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48094148..48094347
location: region:48094148-48094347:1
BFO_0000051: feature:48094148-48094347:1:region
SIO_000974: b0cc390b-cce7-4bd0-8c5b-0ea06f365465

position:48094148:1
position: 48094148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48094347:1
position: 48094347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0cc390b-cce7-4bd0-8c5b-0ea06f365465
SIO_000300: 1
SIO_000628: feature:48094148-48094347:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48234258..48234457
location: region:48234258-48234457:1
BFO_0000051: feature:48234258-48234457:1:region
SIO_000974: 743a9e71-1a71-4a60-bfe1-4b3caa15c74c

position:48234258:1
position: 48234258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48234457:1
position: 48234457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

743a9e71-1a71-4a60-bfe1-4b3caa15c74c
SIO_000300: 1
SIO_000628: feature:48234258-48234457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48292545..48292744
location: region:48292545-48292744:1
BFO_0000051: feature:48292545-48292744:1:region
SIO_000974: 78a2710a-4227-4d04-a66d-343b7b6e14bd

position:48292545:1
position: 48292545
reference: sequence
type: ForwardStrandPosition
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position:48292744:1
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RO_0002162: 414934
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:72506287-72506486:1:region

assembly_gap
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RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:72673307-72673506:1:region

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RO_0002162: 414934
estimated length: 200
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 414934
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:77284213-77284412:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:81120413-81120612:1:region

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RO_0002162: 414934
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BFO_0000050: sequence
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BFO_0000051: feature:84276102-84276301:1:region
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SIO_000300: 1
SIO_000628: feature:84276102-84276301:1:region

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RO_0002162: 414934
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BFO_0000050: sequence
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BFO_0000051: feature:88729790-88729989:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:92648990-92649189:1:region
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SIO_000300: 1
SIO_000628: feature:92648990-92649189:1:region

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estimated length: 200
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BFO_0000050: sequence
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BFO_0000051: feature:92761157-92761356:1:region
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SIO_000300: 1
SIO_000628: feature:92761157-92761356:1:region

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RO_0002162: 414934
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BFO_0000050: sequence
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BFO_0000051: feature:92871064-92871263:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:92975660-92975859:1:region
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SIO_000300: 1
SIO_000628: feature:92975660-92975859:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:96713752-96713951:1:region
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SIO_000300: 1
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RO_0002162: 414934
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BFO_0000050: sequence
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BFO_0000051: feature:97194458-97194657:1:region
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SIO_000300: 1
SIO_000628: feature:97194458-97194657:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:101644096-101644295:1:region
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SIO_000300: 1
SIO_000628: feature:101644096-101644295:1:region

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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:101809082-101809281:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:102276282-102276481:1:region
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SIO_000300: 1
SIO_000628: feature:102276282-102276481:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:102871479-102871678:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:103511867-103512066:1:region
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SIO_000300: 1
SIO_000628: feature:103511867-103512066:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:103864595-103864794:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:104968621-104968820:1:region
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SIO_000300: 1
SIO_000628: feature:104968621-104968820:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:105836689-105836888:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:106143889-106144088:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:106781080-106781279:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:107188641-107188840:1:region
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SIO_000300: 1
SIO_000628: feature:107188641-107188840:1:region

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gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:107436841-107437040:1:region
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SIO_000628: feature:107436841-107437040:1:region

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gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:109460262-109460461:1:region

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RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 110095540..110095739
location: region:110095540-110095739:1
BFO_0000051: feature:110095540-110095739:1:region
SIO_000974: b9505dcc-18ea-4e9b-8ecd-07efa5ef4a1f

position:110095540:1
position: 110095540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110095739:1
position: 110095739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9505dcc-18ea-4e9b-8ecd-07efa5ef4a1f
SIO_000300: 1
SIO_000628: feature:110095540-110095739:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 414934
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 110307054..110307253
location: region:110307054-110307253:1
BFO_0000051: feature:110307054-110307253:1:region
SIO_000974: 9bc2f055-25a4-4ad6-bdc5-44d5347ee558

position:110307054:1
position: 110307054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110307253:1
position: 110307253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9bc2f055-25a4-4ad6-bdc5-44d5347ee558
SIO_000300: 1
SIO_000628: feature:110307054-110307253:1:region