Lysandra coridon genome assembly, chromosome: 29.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 29.
sequence version: HG992084.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6064254
topology: linear
RO_0000086: SO_0000987
location: 1..6064254
location: region:1-6064254:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6064254:1
position: 6064254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6064254:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 29
mol type: genomic DNA

268709
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1187206..1187405
location: region:1187206-1187405:1
BFO_0000051: feature:1187206-1187405:1:region
SIO_000974: 2dd72685-e9ec-4572-985b-d06be26a9fb9

position:1187206:1
position: 1187206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1187405:1
position: 1187405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dd72685-e9ec-4572-985b-d06be26a9fb9
SIO_000300: 1
SIO_000628: feature:1187206-1187405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2101597..2101796
location: region:2101597-2101796:1
BFO_0000051: feature:2101597-2101796:1:region
SIO_000974: ee4de48d-9ae2-49c3-b16e-4ab381ef49ee

position:2101597:1
position: 2101597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2101796:1
position: 2101796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee4de48d-9ae2-49c3-b16e-4ab381ef49ee
SIO_000300: 1
SIO_000628: feature:2101597-2101796:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3790359..3790558
location: region:3790359-3790558:1
BFO_0000051: feature:3790359-3790558:1:region
SIO_000974: 4e1ef264-0011-4d59-9392-1a05a28d9ef0

position:3790359:1
position: 3790359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3790558:1
position: 3790558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e1ef264-0011-4d59-9392-1a05a28d9ef0
SIO_000300: 1
SIO_000628: feature:3790359-3790558:1:region

Lysandra coridon genome assembly, chromosome: 30.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 30.
sequence version: HG992085.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6034467
topology: linear
RO_0000086: SO_0000987
location: 1..6034467
location: region:1-6034467:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6034467:1
position: 6034467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6034467:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 780764..780963
location: region:780764-780963:1
BFO_0000051: feature:780764-780963:1:region
SIO_000974: 3452048c-263f-4dec-82a2-a667af050947

position:780764:1
position: 780764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:780963:1
position: 780963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:780764-780963:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1529474..1529673
location: region:1529474-1529673:1
BFO_0000051: feature:1529474-1529673:1:region
SIO_000974: 8362d9f4-e42e-4299-a58e-46b2ae751be4

position:1529474:1
position: 1529474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1529673:1
position: 1529673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1529474-1529673:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3302811..3303010
location: region:3302811-3303010:1
BFO_0000051: feature:3302811-3303010:1:region
SIO_000974: 3b69a0a3-cc4a-4dff-8d13-8c8001a8bdcd

position:3302811:1
position: 3302811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3303010:1
position: 3303010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3302811-3303010:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4377834..4378033
location: region:4377834-4378033:1
BFO_0000051: feature:4377834-4378033:1:region
SIO_000974: 047ef8a7-d249-460e-8575-b5de8f08af4d

position:4377834:1
position: 4377834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4378033:1
position: 4378033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

047ef8a7-d249-460e-8575-b5de8f08af4d
SIO_000300: 1
SIO_000628: feature:4377834-4378033:1:region

Lysandra coridon genome assembly, chromosome: 31.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 31.
sequence version: HG992086.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6031586
topology: linear
RO_0000086: SO_0000987
location: 1..6031586
location: region:1-6031586:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6031586:1
position: 6031586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6031586:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 31
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4109163..4109362
location: region:4109163-4109362:1
BFO_0000051: feature:4109163-4109362:1:region
SIO_000974: a4af6dca-f9f5-478d-8ff3-2ea3eb711a28

position:4109163:1
position: 4109163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4109362:1
position: 4109362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4109163-4109362:1:region

Lysandra coridon genome assembly, chromosome: 32.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 32.
sequence version: HG992087.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6023844
topology: linear
RO_0000086: SO_0000987
location: 1..6023844
location: region:1-6023844:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6023844:1
position: 6023844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6023844:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 32
mol type: genomic DNA

Lysandra coridon genome assembly, chromosome: 33.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 33.
sequence version: HG992088.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5981311
topology: linear
RO_0000086: SO_0000987
location: 1..5981311
location: region:1-5981311:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5981311:1
position: 5981311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5981311:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 33
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3177342..3177841
location: region:3177342-3177841:1
BFO_0000051: feature:3177342-3177841:1:region
SIO_000974: fc2613ac-17d0-4617-b4ca-c11c9c675d7e

position:3177342:1
position: 3177342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3177841:1
position: 3177841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc2613ac-17d0-4617-b4ca-c11c9c675d7e
SIO_000300: 1
SIO_000628: feature:3177342-3177841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5216895..5217094
location: region:5216895-5217094:1
BFO_0000051: feature:5216895-5217094:1:region
SIO_000974: 35d9f259-6734-4262-b329-434776d3f25e

position:5216895:1
position: 5216895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5217094:1
position: 5217094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35d9f259-6734-4262-b329-434776d3f25e
SIO_000300: 1
SIO_000628: feature:5216895-5217094:1:region

Lysandra coridon genome assembly, chromosome: 34.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 34.
sequence version: HG992089.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5952793
topology: linear
RO_0000086: SO_0000987
location: 1..5952793
location: region:1-5952793:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5952793:1
position: 5952793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5952793:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 34
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3268705..3268904
location: region:3268705-3268904:1
BFO_0000051: feature:3268705-3268904:1:region
SIO_000974: b8e72732-1196-4b8f-9474-7489c77f2875

position:3268705:1
position: 3268705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3268904:1
position: 3268904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8e72732-1196-4b8f-9474-7489c77f2875
SIO_000300: 1
SIO_000628: feature:3268705-3268904:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4854640..4854839
location: region:4854640-4854839:1
BFO_0000051: feature:4854640-4854839:1:region
SIO_000974: fe41ed54-8e26-4e45-a8bf-c0292d36554f

position:4854640:1
position: 4854640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4854839:1
position: 4854839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe41ed54-8e26-4e45-a8bf-c0292d36554f
SIO_000300: 1
SIO_000628: feature:4854640-4854839:1:region

Lysandra coridon genome assembly, chromosome: 35.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 35.
sequence version: HG992090.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5931830
topology: linear
RO_0000086: SO_0000987
location: 1..5931830
location: region:1-5931830:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5931830:1
position: 5931830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5931830:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 35
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2489974..2490173
location: region:2489974-2490173:1
BFO_0000051: feature:2489974-2490173:1:region
SIO_000974: 4b135ab9-41b4-4946-943d-fc2be6d3bc3a

position:2489974:1
position: 2489974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2490173:1
position: 2490173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b135ab9-41b4-4946-943d-fc2be6d3bc3a
SIO_000300: 1
SIO_000628: feature:2489974-2490173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3823590..3824089
location: region:3823590-3824089:1
BFO_0000051: feature:3823590-3824089:1:region
SIO_000974: cc908df3-95a9-4cba-af7f-229c77c902a0

position:3823590:1
position: 3823590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3824089:1
position: 3824089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cc908df3-95a9-4cba-af7f-229c77c902a0
SIO_000300: 1
SIO_000628: feature:3823590-3824089:1:region

Lysandra coridon genome assembly, chromosome: 36.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 36.
sequence version: HG992091.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5892924
topology: linear
RO_0000086: SO_0000987
location: 1..5892924
location: region:1-5892924:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5892924:1
position: 5892924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5892924:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 36
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2054878..2055077
location: region:2054878-2055077:1
BFO_0000051: feature:2054878-2055077:1:region
SIO_000974: 1cc549bd-e068-46c8-a256-403d9fcfb6bb

position:2054878:1
position: 2054878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2055077:1
position: 2055077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1cc549bd-e068-46c8-a256-403d9fcfb6bb
SIO_000300: 1
SIO_000628: feature:2054878-2055077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4602832..4603031
location: region:4602832-4603031:1
BFO_0000051: feature:4602832-4603031:1:region
SIO_000974: d62bdad1-238c-4c2b-b1d0-26e998725d34

position:4602832:1
position: 4602832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4603031:1
position: 4603031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d62bdad1-238c-4c2b-b1d0-26e998725d34
SIO_000300: 1
SIO_000628: feature:4602832-4603031:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4695963..4696162
location: region:4695963-4696162:1
BFO_0000051: feature:4695963-4696162:1:region
SIO_000974: 418ed906-7d6c-453e-be10-82f6dd2f20bb

position:4695963:1
position: 4695963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4696162:1
position: 4696162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

418ed906-7d6c-453e-be10-82f6dd2f20bb
SIO_000300: 1
SIO_000628: feature:4695963-4696162:1:region

Lysandra coridon genome assembly, chromosome: 37.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 37.
sequence version: HG992092.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5869020
topology: linear
RO_0000086: SO_0000987
location: 1..5869020
location: region:1-5869020:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5869020:1
position: 5869020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5869020:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 37
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 823281..823780
location: region:823281-823780:1
BFO_0000051: feature:823281-823780:1:region
SIO_000974: 9cfc6144-f4bb-44fb-8784-425fe859fe6f

position:823281:1
position: 823281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:823780:1
position: 823780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9cfc6144-f4bb-44fb-8784-425fe859fe6f
SIO_000300: 1
SIO_000628: feature:823281-823780:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2677037..2677236
location: region:2677037-2677236:1
BFO_0000051: feature:2677037-2677236:1:region
SIO_000974: 76e63f2d-e050-4b9d-99b1-5f88de7e943d

position:2677037:1
position: 2677037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2677236:1
position: 2677236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76e63f2d-e050-4b9d-99b1-5f88de7e943d
SIO_000300: 1
SIO_000628: feature:2677037-2677236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4098737..4098936
location: region:4098737-4098936:1
BFO_0000051: feature:4098737-4098936:1:region
SIO_000974: 02f20d35-9d18-4f88-9055-cdfa1692b84d

position:4098737:1
position: 4098737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4098936:1
position: 4098936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02f20d35-9d18-4f88-9055-cdfa1692b84d
SIO_000300: 1
SIO_000628: feature:4098737-4098936:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4142708..4142907
location: region:4142708-4142907:1
BFO_0000051: feature:4142708-4142907:1:region
SIO_000974: 03510f52-09ef-4217-9efb-9cbc2a33b9a4

position:4142708:1
position: 4142708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4142907:1
position: 4142907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03510f52-09ef-4217-9efb-9cbc2a33b9a4
SIO_000300: 1
SIO_000628: feature:4142708-4142907:1:region

Lysandra coridon genome assembly, chromosome: 38.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 38.
sequence version: HG992093.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5867063
topology: linear
RO_0000086: SO_0000987
location: 1..5867063
location: region:1-5867063:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5867063:1
position: 5867063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5867063:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 38
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3415300..3415799
location: region:3415300-3415799:1
BFO_0000051: feature:3415300-3415799:1:region
SIO_000974: 21f20a36-5b77-40fd-b32b-93f15b9e7de8

position:3415300:1
position: 3415300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3415799:1
position: 3415799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21f20a36-5b77-40fd-b32b-93f15b9e7de8
SIO_000300: 1
SIO_000628: feature:3415300-3415799:1:region

Lysandra coridon genome assembly, chromosome: 39.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 39.
sequence version: HG992094.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5856216
topology: linear
RO_0000086: SO_0000987
location: 1..5856216
location: region:1-5856216:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5856216:1
position: 5856216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5856216:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 39
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2256023..2256222
location: region:2256023-2256222:1
BFO_0000051: feature:2256023-2256222:1:region
SIO_000974: 3e2d94c2-4ebd-45bc-ac95-ecaa77049ca1

position:2256023:1
position: 2256023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2256222:1
position: 2256222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e2d94c2-4ebd-45bc-ac95-ecaa77049ca1
SIO_000300: 1
SIO_000628: feature:2256023-2256222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3573429..3573628
location: region:3573429-3573628:1
BFO_0000051: feature:3573429-3573628:1:region
SIO_000974: 2318ef62-af4b-4c9e-9ed1-b140bcac6048

position:3573429:1
position: 3573429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3573628:1
position: 3573628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2318ef62-af4b-4c9e-9ed1-b140bcac6048
SIO_000300: 1
SIO_000628: feature:3573429-3573628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4024192..4024391
location: region:4024192-4024391:1
BFO_0000051: feature:4024192-4024391:1:region
SIO_000974: 1bcd7158-b8b0-46fb-a304-9bd3362242e4

position:4024192:1
position: 4024192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4024391:1
position: 4024391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1bcd7158-b8b0-46fb-a304-9bd3362242e4
SIO_000300: 1
SIO_000628: feature:4024192-4024391:1:region

Lysandra coridon genome assembly, chromosome: 40.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 40.
sequence version: HG992095.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5767562
topology: linear
RO_0000086: SO_0000987
location: 1..5767562
location: region:1-5767562:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5767562:1
position: 5767562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5767562:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 40
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1814332..1814531
location: region:1814332-1814531:1
BFO_0000051: feature:1814332-1814531:1:region
SIO_000974: d0c024da-e657-4876-9d2a-c5516673bf86

position:1814332:1
position: 1814332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1814531:1
position: 1814531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d0c024da-e657-4876-9d2a-c5516673bf86
SIO_000300: 1
SIO_000628: feature:1814332-1814531:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2016994..2017193
location: region:2016994-2017193:1
BFO_0000051: feature:2016994-2017193:1:region
SIO_000974: dccbf7dc-a035-4c17-ad16-e2e653ac3546

position:2016994:1
position: 2016994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2017193:1
position: 2017193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dccbf7dc-a035-4c17-ad16-e2e653ac3546
SIO_000300: 1
SIO_000628: feature:2016994-2017193:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3901427..3901626
location: region:3901427-3901626:1
BFO_0000051: feature:3901427-3901626:1:region
SIO_000974: 1955bf5f-a31e-4eb5-a975-a5286457d2e7

position:3901427:1
position: 3901427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3901626:1
position: 3901626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1955bf5f-a31e-4eb5-a975-a5286457d2e7
SIO_000300: 1
SIO_000628: feature:3901427-3901626:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5370999..5371198
location: region:5370999-5371198:1
BFO_0000051: feature:5370999-5371198:1:region
SIO_000974: 6f58b7a0-3709-4619-b5f6-369531edc131

position:5370999:1
position: 5370999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5371198:1
position: 5371198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6f58b7a0-3709-4619-b5f6-369531edc131
SIO_000300: 1
SIO_000628: feature:5370999-5371198:1:region

Lysandra coridon genome assembly, chromosome: 41.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 41.
sequence version: HG992096.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5722579
topology: linear
RO_0000086: SO_0000987
location: 1..5722579
location: region:1-5722579:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5722579:1
position: 5722579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5722579:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 41
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1282759..1283258
location: region:1282759-1283258:1
BFO_0000051: feature:1282759-1283258:1:region
SIO_000974: ccbc1bd5-8302-41b3-ad18-2434baa2d18b

position:1282759:1
position: 1282759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1283258:1
position: 1283258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ccbc1bd5-8302-41b3-ad18-2434baa2d18b
SIO_000300: 1
SIO_000628: feature:1282759-1283258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3242714..3242913
location: region:3242714-3242913:1
BFO_0000051: feature:3242714-3242913:1:region
SIO_000974: f463c73d-253e-4f7e-9327-4ec716d1300e

position:3242714:1
position: 3242714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3242913:1
position: 3242913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f463c73d-253e-4f7e-9327-4ec716d1300e
SIO_000300: 1
SIO_000628: feature:3242714-3242913:1:region

Lysandra coridon genome assembly, chromosome: 42.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 42.
sequence version: HG992097.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5656984
topology: linear
RO_0000086: SO_0000987
location: 1..5656984
location: region:1-5656984:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5656984:1
position: 5656984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5656984:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 42
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3452495..3452694
location: region:3452495-3452694:1
BFO_0000051: feature:3452495-3452694:1:region
SIO_000974: 120de3a3-f97d-43a8-aafc-4c9329fd348d

position:3452495:1
position: 3452495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3452694:1
position: 3452694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

120de3a3-f97d-43a8-aafc-4c9329fd348d
SIO_000300: 1
SIO_000628: feature:3452495-3452694:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3690367..3690566
location: region:3690367-3690566:1
BFO_0000051: feature:3690367-3690566:1:region
SIO_000974: 5c9f082f-6108-4ae8-92f6-7ed18d2b9beb

position:3690367:1
position: 3690367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3690566:1
position: 3690566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5c9f082f-6108-4ae8-92f6-7ed18d2b9beb
SIO_000300: 1
SIO_000628: feature:3690367-3690566:1:region

Lysandra coridon genome assembly, chromosome: 43.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 43.
sequence version: HG992098.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5651233
topology: linear
RO_0000086: SO_0000987
location: 1..5651233
location: region:1-5651233:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5651233:1
position: 5651233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5651233:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 43
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2734943..2735142
location: region:2734943-2735142:1
BFO_0000051: feature:2734943-2735142:1:region
SIO_000974: 02824d42-5359-4ed7-af8f-6f6f924c7e4f

position:2734943:1
position: 2734943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2735142:1
position: 2735142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

02824d42-5359-4ed7-af8f-6f6f924c7e4f
SIO_000300: 1
SIO_000628: feature:2734943-2735142:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4419328..4419527
location: region:4419328-4419527:1
BFO_0000051: feature:4419328-4419527:1:region
SIO_000974: 2878f058-c070-47e1-a2a6-a40fcea15912

position:4419328:1
position: 4419328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4419527:1
position: 4419527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2878f058-c070-47e1-a2a6-a40fcea15912
SIO_000300: 1
SIO_000628: feature:4419328-4419527:1:region

Lysandra coridon genome assembly, chromosome: 44.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 44.
sequence version: HG992099.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5607996
topology: linear
RO_0000086: SO_0000987
location: 1..5607996
location: region:1-5607996:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5607996:1
position: 5607996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5607996:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 44
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2326786..2327285
location: region:2326786-2327285:1
BFO_0000051: feature:2326786-2327285:1:region
SIO_000974: eb246c15-a749-498b-a6d8-a433d803120a

position:2326786:1
position: 2326786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2327285:1
position: 2327285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb246c15-a749-498b-a6d8-a433d803120a
SIO_000300: 1
SIO_000628: feature:2326786-2327285:1:region

Lysandra coridon genome assembly, chromosome: 45.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 45.
sequence version: HG992100.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5570709
topology: linear
RO_0000086: SO_0000987
location: 1..5570709
location: region:1-5570709:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5570709:1
position: 5570709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5570709:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 45
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1678315..1678514
location: region:1678315-1678514:1
BFO_0000051: feature:1678315-1678514:1:region
SIO_000974: 5953c852-90c8-474f-b976-72edce93cf01

position:1678315:1
position: 1678315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1678514:1
position: 1678514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5953c852-90c8-474f-b976-72edce93cf01
SIO_000300: 1
SIO_000628: feature:1678315-1678514:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3565759..3565958
location: region:3565759-3565958:1
BFO_0000051: feature:3565759-3565958:1:region
SIO_000974: f997135e-6051-47fa-a037-aed0304dee60

position:3565759:1
position: 3565759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3565958:1
position: 3565958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f997135e-6051-47fa-a037-aed0304dee60
SIO_000300: 1
SIO_000628: feature:3565759-3565958:1:region

Lysandra coridon genome assembly, chromosome: 46.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 46.
sequence version: HG992101.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5541577
topology: linear
RO_0000086: SO_0000987
location: 1..5541577
location: region:1-5541577:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5541577:1
position: 5541577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5541577:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 46
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3358946..3359445
location: region:3358946-3359445:1
BFO_0000051: feature:3358946-3359445:1:region
SIO_000974: 254816dd-a886-44b2-be60-dcad440df212

position:3358946:1
position: 3358946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3359445:1
position: 3359445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

254816dd-a886-44b2-be60-dcad440df212
SIO_000300: 1
SIO_000628: feature:3358946-3359445:1:region

Lysandra coridon genome assembly, chromosome: 47.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 47.
sequence version: HG992102.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5537282
topology: linear
RO_0000086: SO_0000987
location: 1..5537282
location: region:1-5537282:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5537282:1
position: 5537282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5537282:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 47
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3659811..3660310
location: region:3659811-3660310:1
BFO_0000051: feature:3659811-3660310:1:region
SIO_000974: e2038b55-3608-4fc0-8d48-1162d385ad4d

position:3659811:1
position: 3659811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3660310:1
position: 3660310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2038b55-3608-4fc0-8d48-1162d385ad4d
SIO_000300: 1
SIO_000628: feature:3659811-3660310:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5373508..5373707
location: region:5373508-5373707:1
BFO_0000051: feature:5373508-5373707:1:region
SIO_000974: 87f30d4f-8b46-4131-b26f-4e4577f007ea

position:5373508:1
position: 5373508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5373707:1
position: 5373707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

87f30d4f-8b46-4131-b26f-4e4577f007ea
SIO_000300: 1
SIO_000628: feature:5373508-5373707:1:region

Lysandra coridon genome assembly, chromosome: 48.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 48.
sequence version: HG992103.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5467013
topology: linear
RO_0000086: SO_0000987
location: 1..5467013
location: region:1-5467013:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5467013:1
position: 5467013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5467013:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 48
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2114839..2115038
location: region:2114839-2115038:1
BFO_0000051: feature:2114839-2115038:1:region
SIO_000974: 4276dec1-0fe3-43e2-be1a-cd4b58897606

position:2114839:1
position: 2114839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2115038:1
position: 2115038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4276dec1-0fe3-43e2-be1a-cd4b58897606
SIO_000300: 1
SIO_000628: feature:2114839-2115038:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2213878..2214077
location: region:2213878-2214077:1
BFO_0000051: feature:2213878-2214077:1:region
SIO_000974: fb9dcc3a-448f-4b8d-96f0-80aa217bca95

position:2213878:1
position: 2213878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2214077:1
position: 2214077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fb9dcc3a-448f-4b8d-96f0-80aa217bca95
SIO_000300: 1
SIO_000628: feature:2213878-2214077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2854190..2854389
location: region:2854190-2854389:1
BFO_0000051: feature:2854190-2854389:1:region
SIO_000974: edae05e2-a009-4d1a-b5f5-319aba3e4936

position:2854190:1
position: 2854190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2854389:1
position: 2854389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

edae05e2-a009-4d1a-b5f5-319aba3e4936
SIO_000300: 1
SIO_000628: feature:2854190-2854389:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3921659..3922158
location: region:3921659-3922158:1
BFO_0000051: feature:3921659-3922158:1:region
SIO_000974: b37dc813-6972-4769-9936-a5e239044b77

position:3921659:1
position: 3921659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3922158:1
position: 3922158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b37dc813-6972-4769-9936-a5e239044b77
SIO_000300: 1
SIO_000628: feature:3921659-3922158:1:region

Lysandra coridon genome assembly, chromosome: 49.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 49.
sequence version: HG992104.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5409758
topology: linear
RO_0000086: SO_0000987
location: 1..5409758
location: region:1-5409758:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5409758:1
position: 5409758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5409758:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 49
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4291220..4291419
location: region:4291220-4291419:1
BFO_0000051: feature:4291220-4291419:1:region
SIO_000974: 2dd8cc01-e447-4054-877d-db21e12f37df

position:4291220:1
position: 4291220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4291419:1
position: 4291419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dd8cc01-e447-4054-877d-db21e12f37df
SIO_000300: 1
SIO_000628: feature:4291220-4291419:1:region

Lysandra coridon genome assembly, chromosome: 50.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 50.
sequence version: HG992105.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5373060
topology: linear
RO_0000086: SO_0000987
location: 1..5373060
location: region:1-5373060:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5373060:1
position: 5373060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5373060:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 50
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2201875..2202374
location: region:2201875-2202374:1
BFO_0000051: feature:2201875-2202374:1:region
SIO_000974: 35b3ddf5-1de1-42c3-b2c2-8af5136911e0

position:2201875:1
position: 2201875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2202374:1
position: 2202374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35b3ddf5-1de1-42c3-b2c2-8af5136911e0
SIO_000300: 1
SIO_000628: feature:2201875-2202374:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3527996..3528495
location: region:3527996-3528495:1
BFO_0000051: feature:3527996-3528495:1:region
SIO_000974: e61cc0b5-fe22-4767-a646-8fc0b91118cf

position:3527996:1
position: 3527996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3528495:1
position: 3528495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e61cc0b5-fe22-4767-a646-8fc0b91118cf
SIO_000300: 1
SIO_000628: feature:3527996-3528495:1:region

Lysandra coridon genome assembly, chromosome: 51.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 51.
sequence version: HG992106.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5299877
topology: linear
RO_0000086: SO_0000987
location: 1..5299877
location: region:1-5299877:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5299877:1
position: 5299877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5299877:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 51
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1750001..1750200
location: region:1750001-1750200:1
BFO_0000051: feature:1750001-1750200:1:region
SIO_000974: 34679eea-3467-40c6-a802-a767b7f45971

position:1750001:1
position: 1750001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1750200:1
position: 1750200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34679eea-3467-40c6-a802-a767b7f45971
SIO_000300: 1
SIO_000628: feature:1750001-1750200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3707933..3708132
location: region:3707933-3708132:1
BFO_0000051: feature:3707933-3708132:1:region
SIO_000974: 6cbcc546-5088-4f3e-a4d4-1e83eca17526

position:3707933:1
position: 3707933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3708132:1
position: 3708132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6cbcc546-5088-4f3e-a4d4-1e83eca17526
SIO_000300: 1
SIO_000628: feature:3707933-3708132:1:region

Lysandra coridon genome assembly, chromosome: 52.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 52.
sequence version: HG992107.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5270287
topology: linear
RO_0000086: SO_0000987
location: 1..5270287
location: region:1-5270287:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5270287:1
position: 5270287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5270287:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 52
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1515826..1516025
location: region:1515826-1516025:1
BFO_0000051: feature:1515826-1516025:1:region
SIO_000974: 390fa704-27f7-4faa-b4a3-f30e934f2446

position:1515826:1
position: 1515826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1516025:1
position: 1516025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

390fa704-27f7-4faa-b4a3-f30e934f2446
SIO_000300: 1
SIO_000628: feature:1515826-1516025:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3252469..3252668
location: region:3252469-3252668:1
BFO_0000051: feature:3252469-3252668:1:region
SIO_000974: 7cbf5d8e-6984-4e1e-9442-fa74de9ac2e7

position:3252469:1
position: 3252469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3252668:1
position: 3252668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7cbf5d8e-6984-4e1e-9442-fa74de9ac2e7
SIO_000300: 1
SIO_000628: feature:3252469-3252668:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4196416..4196615
location: region:4196416-4196615:1
BFO_0000051: feature:4196416-4196615:1:region
SIO_000974: f4163416-c416-4526-ab30-6e6a0dbd0575

position:4196416:1
position: 4196416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4196615:1
position: 4196615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f4163416-c416-4526-ab30-6e6a0dbd0575
SIO_000300: 1
SIO_000628: feature:4196416-4196615:1:region

Lysandra coridon genome assembly, chromosome: 53.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 53.
sequence version: HG992108.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5243869
topology: linear
RO_0000086: SO_0000987
location: 1..5243869
location: region:1-5243869:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5243869:1
position: 5243869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5243869:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 53
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1703786..1703985
location: region:1703786-1703985:1
BFO_0000051: feature:1703786-1703985:1:region
SIO_000974: 94ba831b-2166-44d6-b790-038f73434df5

position:1703786:1
position: 1703786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1703985:1
position: 1703985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94ba831b-2166-44d6-b790-038f73434df5
SIO_000300: 1
SIO_000628: feature:1703786-1703985:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2719441..2719640
location: region:2719441-2719640:1
BFO_0000051: feature:2719441-2719640:1:region
SIO_000974: ff37bc21-a3d8-4e72-be78-a725cca1e483

position:2719441:1
position: 2719441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2719640:1
position: 2719640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff37bc21-a3d8-4e72-be78-a725cca1e483
SIO_000300: 1
SIO_000628: feature:2719441-2719640:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3954537..3954736
location: region:3954537-3954736:1
BFO_0000051: feature:3954537-3954736:1:region
SIO_000974: 0aa4f0e3-acce-4029-a4c8-a261b2607301

position:3954537:1
position: 3954537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3954736:1
position: 3954736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0aa4f0e3-acce-4029-a4c8-a261b2607301
SIO_000300: 1
SIO_000628: feature:3954537-3954736:1:region

Lysandra coridon genome assembly, chromosome: 54.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 54.
sequence version: HG992109.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5210683
topology: linear
RO_0000086: SO_0000987
location: 1..5210683
location: region:1-5210683:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5210683:1
position: 5210683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5210683:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 54
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1478185..1478384
location: region:1478185-1478384:1
BFO_0000051: feature:1478185-1478384:1:region
SIO_000974: c2c4c157-8043-45bf-969e-303cb0b96ec7

position:1478185:1
position: 1478185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1478384:1
position: 1478384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2c4c157-8043-45bf-969e-303cb0b96ec7
SIO_000300: 1
SIO_000628: feature:1478185-1478384:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1694384..1694583
location: region:1694384-1694583:1
BFO_0000051: feature:1694384-1694583:1:region
SIO_000974: 716052d9-dd23-4ed9-8f22-33ef46569fd8

position:1694384:1
position: 1694384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1694583:1
position: 1694583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

716052d9-dd23-4ed9-8f22-33ef46569fd8
SIO_000300: 1
SIO_000628: feature:1694384-1694583:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3149593..3149792
location: region:3149593-3149792:1
BFO_0000051: feature:3149593-3149792:1:region
SIO_000974: f0580f61-a513-4c7e-b94d-53bbdce4b211

position:3149593:1
position: 3149593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3149792:1
position: 3149792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0580f61-a513-4c7e-b94d-53bbdce4b211
SIO_000300: 1
SIO_000628: feature:3149593-3149792:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3205694..3205893
location: region:3205694-3205893:1
BFO_0000051: feature:3205694-3205893:1:region
SIO_000974: 5ab24ef6-eb27-4709-89d4-9d3d2422a4cc

position:3205694:1
position: 3205694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3205893:1
position: 3205893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ab24ef6-eb27-4709-89d4-9d3d2422a4cc
SIO_000300: 1
SIO_000628: feature:3205694-3205893:1:region

Lysandra coridon genome assembly, chromosome: 55.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 55.
sequence version: HG992110.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5202897
topology: linear
RO_0000086: SO_0000987
location: 1..5202897
location: region:1-5202897:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5202897:1
position: 5202897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5202897:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 55
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1074016..1074215
location: region:1074016-1074215:1
BFO_0000051: feature:1074016-1074215:1:region
SIO_000974: e8f9e74a-b8f0-4149-821e-4983ee0af7da

position:1074016:1
position: 1074016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1074215:1
position: 1074215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8f9e74a-b8f0-4149-821e-4983ee0af7da
SIO_000300: 1
SIO_000628: feature:1074016-1074215:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2873778..2873977
location: region:2873778-2873977:1
BFO_0000051: feature:2873778-2873977:1:region
SIO_000974: d59628fc-ea7f-49a6-9150-b99bc541ebdd

position:2873778:1
position: 2873778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2873977:1
position: 2873977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d59628fc-ea7f-49a6-9150-b99bc541ebdd
SIO_000300: 1
SIO_000628: feature:2873778-2873977:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4628711..4628910
location: region:4628711-4628910:1
BFO_0000051: feature:4628711-4628910:1:region
SIO_000974: 8993cce6-7e4b-48f1-a8d8-7e7dcfd71c87

position:4628711:1
position: 4628711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4628910:1
position: 4628910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8993cce6-7e4b-48f1-a8d8-7e7dcfd71c87
SIO_000300: 1
SIO_000628: feature:4628711-4628910:1:region

Lysandra coridon genome assembly, chromosome: 56.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 56.
sequence version: HG992111.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5152821
topology: linear
RO_0000086: SO_0000987
location: 1..5152821
location: region:1-5152821:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5152821:1
position: 5152821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5152821:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 56
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 740800..740999
location: region:740800-740999:1
BFO_0000051: feature:740800-740999:1:region
SIO_000974: 60df0658-f787-4825-9e19-e481c42fd5ba

position:740800:1
position: 740800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:740999:1
position: 740999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60df0658-f787-4825-9e19-e481c42fd5ba
SIO_000300: 1
SIO_000628: feature:740800-740999:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1344708..1344907
location: region:1344708-1344907:1
BFO_0000051: feature:1344708-1344907:1:region
SIO_000974: ce1b1226-11db-4749-833d-2f8222608458

position:1344708:1
position: 1344708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1344907:1
position: 1344907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ce1b1226-11db-4749-833d-2f8222608458
SIO_000300: 1
SIO_000628: feature:1344708-1344907:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4080409..4080908
location: region:4080409-4080908:1
BFO_0000051: feature:4080409-4080908:1:region
SIO_000974: 863315f1-923e-4a1a-8fef-7e165b28d1c6

position:4080409:1
position: 4080409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4080908:1
position: 4080908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

863315f1-923e-4a1a-8fef-7e165b28d1c6
SIO_000300: 1
SIO_000628: feature:4080409-4080908:1:region

Lysandra coridon genome assembly, chromosome: 57.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 57.
sequence version: HG992112.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5133178
topology: linear
RO_0000086: SO_0000987
location: 1..5133178
location: region:1-5133178:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5133178:1
position: 5133178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5133178:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 57
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 976340..976839
location: region:976340-976839:1
BFO_0000051: feature:976340-976839:1:region
SIO_000974: 2d48da69-de75-400f-ae7b-f8d74d663ffa

position:976340:1
position: 976340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:976839:1
position: 976839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d48da69-de75-400f-ae7b-f8d74d663ffa
SIO_000300: 1
SIO_000628: feature:976340-976839:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1719253..1719452
location: region:1719253-1719452:1
BFO_0000051: feature:1719253-1719452:1:region
SIO_000974: a8bda700-facc-4a17-9e66-847e257a69cb

position:1719253:1
position: 1719253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1719452:1
position: 1719452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8bda700-facc-4a17-9e66-847e257a69cb
SIO_000300: 1
SIO_000628: feature:1719253-1719452:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3505032..3505231
location: region:3505032-3505231:1
BFO_0000051: feature:3505032-3505231:1:region
SIO_000974: ba25ac4d-748d-4425-ad95-e9d3b31f9449

position:3505032:1
position: 3505032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3505231:1
position: 3505231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba25ac4d-748d-4425-ad95-e9d3b31f9449
SIO_000300: 1
SIO_000628: feature:3505032-3505231:1:region

Lysandra coridon genome assembly, chromosome: 58.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 58.
sequence version: HG992113.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5131792
topology: linear
RO_0000086: SO_0000987
location: 1..5131792
location: region:1-5131792:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5131792:1
position: 5131792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5131792:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 58
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1724186..1724385
location: region:1724186-1724385:1
BFO_0000051: feature:1724186-1724385:1:region
SIO_000974: 8c6c750d-1632-422a-acbe-a9e0d15d434e

position:1724186:1
position: 1724186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1724385:1
position: 1724385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c6c750d-1632-422a-acbe-a9e0d15d434e
SIO_000300: 1
SIO_000628: feature:1724186-1724385:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3102982..3103181
location: region:3102982-3103181:1
BFO_0000051: feature:3102982-3103181:1:region
SIO_000974: 873db90a-973f-4804-87fd-e8543e962475

position:3102982:1
position: 3102982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3103181:1
position: 3103181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

873db90a-973f-4804-87fd-e8543e962475
SIO_000300: 1
SIO_000628: feature:3102982-3103181:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3601582..3601781
location: region:3601582-3601781:1
BFO_0000051: feature:3601582-3601781:1:region
SIO_000974: c7bca08d-cfe0-46fe-97cc-2aa352d4acf8

position:3601582:1
position: 3601582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3601781:1
position: 3601781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7bca08d-cfe0-46fe-97cc-2aa352d4acf8
SIO_000300: 1
SIO_000628: feature:3601582-3601781:1:region

Lysandra coridon genome assembly, chromosome: 59.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 59.
sequence version: HG992114.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5131231
topology: linear
RO_0000086: SO_0000987
location: 1..5131231
location: region:1-5131231:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5131231:1
position: 5131231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5131231:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 59
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 1287014..1287113
location: region:1287014-1287113:1
BFO_0000051: feature:1287014-1287113:1:region
SIO_000974: 8f978b2d-00a3-43da-a541-c3f85890527d

position:1287014:1
position: 1287014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1287113:1
position: 1287113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8f978b2d-00a3-43da-a541-c3f85890527d
SIO_000300: 1
SIO_000628: feature:1287014-1287113:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3383443..3383642
location: region:3383443-3383642:1
BFO_0000051: feature:3383443-3383642:1:region
SIO_000974: ab9d471b-e566-4bd2-9dd1-f57781af25f6

position:3383443:1
position: 3383443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3383642:1
position: 3383642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab9d471b-e566-4bd2-9dd1-f57781af25f6
SIO_000300: 1
SIO_000628: feature:3383443-3383642:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4076350..4076549
location: region:4076350-4076549:1
BFO_0000051: feature:4076350-4076549:1:region
SIO_000974: fc21f19d-6e48-4eb8-aa99-4c7f5de0ea28

position:4076350:1
position: 4076350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076549:1
position: 4076549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc21f19d-6e48-4eb8-aa99-4c7f5de0ea28
SIO_000300: 1
SIO_000628: feature:4076350-4076549:1:region

Lysandra coridon genome assembly, chromosome: 60.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 60.
sequence version: HG992115.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5115218
topology: linear
RO_0000086: SO_0000987
location: 1..5115218
location: region:1-5115218:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5115218:1
position: 5115218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5115218:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 60
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1598532..1598731
location: region:1598532-1598731:1
BFO_0000051: feature:1598532-1598731:1:region
SIO_000974: f74e757a-2dad-4aec-9449-f94c95aa012b

position:1598532:1
position: 1598532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1598731:1
position: 1598731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f74e757a-2dad-4aec-9449-f94c95aa012b
SIO_000300: 1
SIO_000628: feature:1598532-1598731:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2591319..2591518
location: region:2591319-2591518:1
BFO_0000051: feature:2591319-2591518:1:region
SIO_000974: b521297e-28a2-47d4-ad66-f3416ec2a736

position:2591319:1
position: 2591319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2591518:1
position: 2591518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b521297e-28a2-47d4-ad66-f3416ec2a736
SIO_000300: 1
SIO_000628: feature:2591319-2591518:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3588049..3588548
location: region:3588049-3588548:1
BFO_0000051: feature:3588049-3588548:1:region
SIO_000974: 58d1bb19-2065-4f1e-8d18-e976b09933a8

position:3588049:1
position: 3588049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3588548:1
position: 3588548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

58d1bb19-2065-4f1e-8d18-e976b09933a8
SIO_000300: 1
SIO_000628: feature:3588049-3588548:1:region

Lysandra coridon genome assembly, chromosome: 61.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 61.
sequence version: HG992116.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5074516
topology: linear
RO_0000086: SO_0000987
location: 1..5074516
location: region:1-5074516:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5074516:1
position: 5074516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5074516:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 61
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1136668..1137167
location: region:1136668-1137167:1
BFO_0000051: feature:1136668-1137167:1:region
SIO_000974: 4172c9f0-b122-496c-9b3c-05c3e8b0ade2

position:1136668:1
position: 1136668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1137167:1
position: 1137167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1136668-1137167:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1980639..1981138
location: region:1980639-1981138:1
BFO_0000051: feature:1980639-1981138:1:region
SIO_000974: c9d98c9f-f434-44fa-962f-40c4a9d603b8

position:1980639:1
position: 1980639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1981138:1
position: 1981138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9d98c9f-f434-44fa-962f-40c4a9d603b8
SIO_000300: 1
SIO_000628: feature:1980639-1981138:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2976605..2976804
location: region:2976605-2976804:1
BFO_0000051: feature:2976605-2976804:1:region
SIO_000974: 2d7d8173-3ce9-492d-acd7-275809674f26

position:2976605:1
position: 2976605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2976804:1
position: 2976804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2976605-2976804:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3214795..3214994
location: region:3214795-3214994:1
BFO_0000051: feature:3214795-3214994:1:region
SIO_000974: f03af00d-c9cf-4f7d-bd89-d7ca0f789d49

position:3214795:1
position: 3214795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3214994:1
position: 3214994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3214795-3214994:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3546438..3546637
location: region:3546438-3546637:1
BFO_0000051: feature:3546438-3546637:1:region
SIO_000974: 3a3b2d13-b247-491a-8fee-9d5433641c8f

position:3546438:1
position: 3546438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3546637:1
position: 3546637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3546438-3546637:1:region

Lysandra coridon genome assembly, chromosome: 62.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 62.
sequence version: HG992117.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5051452
topology: linear
RO_0000086: SO_0000987
location: 1..5051452
location: region:1-5051452:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5051452:1
position: 5051452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5051452:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 62
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2042294..2042493
location: region:2042294-2042493:1
BFO_0000051: feature:2042294-2042493:1:region
SIO_000974: 93cbdfc9-48fd-4e04-b3ff-512bd3bb272d

position:2042294:1
position: 2042294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2042493:1
position: 2042493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93cbdfc9-48fd-4e04-b3ff-512bd3bb272d
SIO_000300: 1
SIO_000628: feature:2042294-2042493:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2383653..2383852
location: region:2383653-2383852:1
BFO_0000051: feature:2383653-2383852:1:region
SIO_000974: b4a41e5f-8f5b-4f97-9fe1-33adff79e9b5

position:2383653:1
position: 2383653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2383852:1
position: 2383852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4a41e5f-8f5b-4f97-9fe1-33adff79e9b5
SIO_000300: 1
SIO_000628: feature:2383653-2383852:1:region

Lysandra coridon genome assembly, chromosome: 63.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 63.
sequence version: HG992118.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5034254
topology: linear
RO_0000086: SO_0000987
location: 1..5034254
location: region:1-5034254:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5034254:1
position: 5034254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5034254:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 63
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 714393..714592
location: region:714393-714592:1
BFO_0000051: feature:714393-714592:1:region
SIO_000974: 9b4d79e6-5535-43c7-9598-2eae589f1965

position:714393:1
position: 714393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714592:1
position: 714592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:714393-714592:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3297027..3297526
location: region:3297027-3297526:1
BFO_0000051: feature:3297027-3297526:1:region
SIO_000974: dac359ad-94c6-4ac0-9bc4-22ffdd7d7934

position:3297027:1
position: 3297027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3297526:1
position: 3297526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dac359ad-94c6-4ac0-9bc4-22ffdd7d7934
SIO_000300: 1
SIO_000628: feature:3297027-3297526:1:region

Lysandra coridon genome assembly, chromosome: 64.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 64.
sequence version: HG992119.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4933674
topology: linear
RO_0000086: SO_0000987
location: 1..4933674
location: region:1-4933674:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4933674:1
position: 4933674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4933674:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 64
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1847744..1847943
location: region:1847744-1847943:1
BFO_0000051: feature:1847744-1847943:1:region
SIO_000974: 44ea42be-0c81-4c2d-833b-beb5ef833772

position:1847744:1
position: 1847744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1847943:1
position: 1847943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44ea42be-0c81-4c2d-833b-beb5ef833772
SIO_000300: 1
SIO_000628: feature:1847744-1847943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3813160..3813359
location: region:3813160-3813359:1
BFO_0000051: feature:3813160-3813359:1:region
SIO_000974: f5ceed5d-6e76-4b97-9634-56659ee0df77

position:3813160:1
position: 3813160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3813359:1
position: 3813359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3813160-3813359:1:region

Lysandra coridon genome assembly, chromosome: 65.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 65.
sequence version: HG992120.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4915405
topology: linear
RO_0000086: SO_0000987
location: 1..4915405
location: region:1-4915405:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4915405:1
position: 4915405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4915405:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 65
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1332040..1332239
location: region:1332040-1332239:1
BFO_0000051: feature:1332040-1332239:1:region
SIO_000974: 802e139a-302c-4f55-9517-f93cf0a2d2bd

position:1332040:1
position: 1332040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1332239:1
position: 1332239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

802e139a-302c-4f55-9517-f93cf0a2d2bd
SIO_000300: 1
SIO_000628: feature:1332040-1332239:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1500080..1500279
location: region:1500080-1500279:1
BFO_0000051: feature:1500080-1500279:1:region
SIO_000974: a09cf678-ff61-4337-9b0a-27d6a6450c17

position:1500080:1
position: 1500080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1500279:1
position: 1500279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a09cf678-ff61-4337-9b0a-27d6a6450c17
SIO_000300: 1
SIO_000628: feature:1500080-1500279:1:region

Lysandra coridon genome assembly, chromosome: 66.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 66.
sequence version: HG992121.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4910347
topology: linear
RO_0000086: SO_0000987
location: 1..4910347
location: region:1-4910347:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4910347:1
position: 4910347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4910347:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 66
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2179697..2179896
location: region:2179697-2179896:1
BFO_0000051: feature:2179697-2179896:1:region
SIO_000974: 7e259bd3-b6db-4997-bb3c-2b23af2f283c

position:2179697:1
position: 2179697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2179896:1
position: 2179896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7e259bd3-b6db-4997-bb3c-2b23af2f283c
SIO_000300: 1
SIO_000628: feature:2179697-2179896:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2796083..2796282
location: region:2796083-2796282:1
BFO_0000051: feature:2796083-2796282:1:region
SIO_000974: 29aacc3d-aad3-443a-9838-85f812b7e6bc

position:2796083:1
position: 2796083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2796282:1
position: 2796282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29aacc3d-aad3-443a-9838-85f812b7e6bc
SIO_000300: 1
SIO_000628: feature:2796083-2796282:1:region

Lysandra coridon genome assembly, chromosome: 67.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 67.
sequence version: HG992122.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4909140
topology: linear
RO_0000086: SO_0000987
location: 1..4909140
location: region:1-4909140:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4909140:1
position: 4909140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4909140:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 67
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1639412..1639611
location: region:1639412-1639611:1
BFO_0000051: feature:1639412-1639611:1:region
SIO_000974: 8435acf7-fb1e-4f3e-939f-75fb9414b711

position:1639412:1
position: 1639412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1639611:1
position: 1639611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8435acf7-fb1e-4f3e-939f-75fb9414b711
SIO_000300: 1
SIO_000628: feature:1639412-1639611:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1896740..1896939
location: region:1896740-1896939:1
BFO_0000051: feature:1896740-1896939:1:region
SIO_000974: c9cefdf5-bcf2-4bd1-aa45-4ffcd64824f3

position:1896740:1
position: 1896740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1896939:1
position: 1896939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9cefdf5-bcf2-4bd1-aa45-4ffcd64824f3
SIO_000300: 1
SIO_000628: feature:1896740-1896939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3351940..3352139
location: region:3351940-3352139:1
BFO_0000051: feature:3351940-3352139:1:region
SIO_000974: 48e6fc49-d04d-4b3c-9b33-fc6e9565c1cc

position:3351940:1
position: 3351940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3352139:1
position: 3352139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

48e6fc49-d04d-4b3c-9b33-fc6e9565c1cc
SIO_000300: 1
SIO_000628: feature:3351940-3352139:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3394394..3394593
location: region:3394394-3394593:1
BFO_0000051: feature:3394394-3394593:1:region
SIO_000974: 2a33b2a7-ee53-4146-8a13-6297d3abe03b

position:3394394:1
position: 3394394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3394593:1
position: 3394593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a33b2a7-ee53-4146-8a13-6297d3abe03b
SIO_000300: 1
SIO_000628: feature:3394394-3394593:1:region

Lysandra coridon genome assembly, chromosome: 68.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 68.
sequence version: HG992123.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4853177
topology: linear
RO_0000086: SO_0000987
location: 1..4853177
location: region:1-4853177:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4853177:1
position: 4853177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4853177:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 68
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1159598..1159797
location: region:1159598-1159797:1
BFO_0000051: feature:1159598-1159797:1:region
SIO_000974: b25cbc38-e38e-42e5-bf08-a4c8cd3e3865

position:1159598:1
position: 1159598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1159797:1
position: 1159797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b25cbc38-e38e-42e5-bf08-a4c8cd3e3865
SIO_000300: 1
SIO_000628: feature:1159598-1159797:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2216624..2216823
location: region:2216624-2216823:1
BFO_0000051: feature:2216624-2216823:1:region
SIO_000974: 99321ea8-b319-4cc3-99c1-3943b728d66e

position:2216624:1
position: 2216624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2216823:1
position: 2216823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

99321ea8-b319-4cc3-99c1-3943b728d66e
SIO_000300: 1
SIO_000628: feature:2216624-2216823:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3760548..3760747
location: region:3760548-3760747:1
BFO_0000051: feature:3760548-3760747:1:region
SIO_000974: 496960d6-6608-45c0-972d-a84570310346

position:3760548:1
position: 3760548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3760747:1
position: 3760747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

496960d6-6608-45c0-972d-a84570310346
SIO_000300: 1
SIO_000628: feature:3760548-3760747:1:region

Lysandra coridon genome assembly, chromosome: 69.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 69.
sequence version: HG992124.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4847654
topology: linear
RO_0000086: SO_0000987
location: 1..4847654
location: region:1-4847654:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4847654:1
position: 4847654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4847654:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 69
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 840709..840908
location: region:840709-840908:1
BFO_0000051: feature:840709-840908:1:region
SIO_000974: 2d9051e8-dcd3-4165-9f63-1d672405337e

position:840709:1
position: 840709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:840908:1
position: 840908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d9051e8-dcd3-4165-9f63-1d672405337e
SIO_000300: 1
SIO_000628: feature:840709-840908:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2212108..2212307
location: region:2212108-2212307:1
BFO_0000051: feature:2212108-2212307:1:region
SIO_000974: 59d8ef3b-1f2d-4eb2-8a2e-4990723fbcee

position:2212108:1
position: 2212108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2212307:1
position: 2212307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59d8ef3b-1f2d-4eb2-8a2e-4990723fbcee
SIO_000300: 1
SIO_000628: feature:2212108-2212307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2761635..2761834
location: region:2761635-2761834:1
BFO_0000051: feature:2761635-2761834:1:region
SIO_000974: 63cd48f3-1ff5-4e1a-bd2c-38111e265080

position:2761635:1
position: 2761635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2761834:1
position: 2761834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

63cd48f3-1ff5-4e1a-bd2c-38111e265080
SIO_000300: 1
SIO_000628: feature:2761635-2761834:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4208261..4208460
location: region:4208261-4208460:1
BFO_0000051: feature:4208261-4208460:1:region
SIO_000974: 33fff3e1-1ecc-4bb0-b7d2-ca9b6b2f95cc

position:4208261:1
position: 4208261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4208460:1
position: 4208460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

33fff3e1-1ecc-4bb0-b7d2-ca9b6b2f95cc
SIO_000300: 1
SIO_000628: feature:4208261-4208460:1:region

Lysandra coridon genome assembly, chromosome: 70.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 70.
sequence version: HG992125.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4826588
topology: linear
RO_0000086: SO_0000987
location: 1..4826588
location: region:1-4826588:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4826588:1
position: 4826588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4826588:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 70
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2290962..2291161
location: region:2290962-2291161:1
BFO_0000051: feature:2290962-2291161:1:region
SIO_000974: 66848e1f-e5eb-47c2-83de-1094ec8a8865

position:2290962:1
position: 2290962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2291161:1
position: 2291161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

66848e1f-e5eb-47c2-83de-1094ec8a8865
SIO_000300: 1
SIO_000628: feature:2290962-2291161:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 3046284..3046383
location: region:3046284-3046383:1
BFO_0000051: feature:3046284-3046383:1:region
SIO_000974: 7ce70b7b-121c-42d1-acff-f153cdd2a717

position:3046284:1
position: 3046284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3046383:1
position: 3046383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ce70b7b-121c-42d1-acff-f153cdd2a717
SIO_000300: 1
SIO_000628: feature:3046284-3046383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4177934..4178433
location: region:4177934-4178433:1
BFO_0000051: feature:4177934-4178433:1:region
SIO_000974: c29a7edf-a5b0-4995-ae5c-6843a06f65ac

position:4177934:1
position: 4177934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4178433:1
position: 4178433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c29a7edf-a5b0-4995-ae5c-6843a06f65ac
SIO_000300: 1
SIO_000628: feature:4177934-4178433:1:region

Lysandra coridon genome assembly, chromosome: 71.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 71.
sequence version: HG992126.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4793169
topology: linear
RO_0000086: SO_0000987
location: 1..4793169
location: region:1-4793169:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4793169:1
position: 4793169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4793169:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 71
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1660361..1660560
location: region:1660361-1660560:1
BFO_0000051: feature:1660361-1660560:1:region
SIO_000974: f07c24e2-55a9-400b-9c9d-b7b8bbe9be36

position:1660361:1
position: 1660361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1660560:1
position: 1660560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f07c24e2-55a9-400b-9c9d-b7b8bbe9be36
SIO_000300: 1
SIO_000628: feature:1660361-1660560:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1782958..1783157
location: region:1782958-1783157:1
BFO_0000051: feature:1782958-1783157:1:region
SIO_000974: cc4c7d2a-0456-4ed1-839d-116df1a5a966

position:1782958:1
position: 1782958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1783157:1
position: 1783157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cc4c7d2a-0456-4ed1-839d-116df1a5a966
SIO_000300: 1
SIO_000628: feature:1782958-1783157:1:region

Lysandra coridon genome assembly, chromosome: 72.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 72.
sequence version: HG992127.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4773643
topology: linear
RO_0000086: SO_0000987
location: 1..4773643
location: region:1-4773643:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4773643:1
position: 4773643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4773643:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 72
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2744332..2744831
location: region:2744332-2744831:1
BFO_0000051: feature:2744332-2744831:1:region
SIO_000974: 180e5ca2-a4c7-4713-8fec-b41add0bfb09

position:2744332:1
position: 2744332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2744831:1
position: 2744831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

180e5ca2-a4c7-4713-8fec-b41add0bfb09
SIO_000300: 1
SIO_000628: feature:2744332-2744831:1:region

Lysandra coridon genome assembly, chromosome: 73.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 73.
sequence version: HG992128.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4763293
topology: linear
RO_0000086: SO_0000987
location: 1..4763293
location: region:1-4763293:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4763293:1
position: 4763293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4763293:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 73
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: unknown
gap type: unknown
BFO_0000050: sequence
location: 1636783..1636882
location: region:1636783-1636882:1
BFO_0000051: feature:1636783-1636882:1:region
SIO_000974: 44096ada-e9d9-4127-9150-e623f99bbe6b

position:1636783:1
position: 1636783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1636882:1
position: 1636882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44096ada-e9d9-4127-9150-e623f99bbe6b
SIO_000300: 1
SIO_000628: feature:1636783-1636882:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3800191..3800390
location: region:3800191-3800390:1
BFO_0000051: feature:3800191-3800390:1:region
SIO_000974: c7f4c913-00ff-4f73-b0c4-2b9d3bd25785

position:3800191:1
position: 3800191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3800390:1
position: 3800390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7f4c913-00ff-4f73-b0c4-2b9d3bd25785
SIO_000300: 1
SIO_000628: feature:3800191-3800390:1:region

Lysandra coridon genome assembly, chromosome: 74.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 74.
sequence version: HG992129.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4691659
topology: linear
RO_0000086: SO_0000987
location: 1..4691659
location: region:1-4691659:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4691659:1
position: 4691659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4691659:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 74
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1137801..1138000
location: region:1137801-1138000:1
BFO_0000051: feature:1137801-1138000:1:region
SIO_000974: 6b677377-2f46-49ba-b344-dd838db84549

position:1137801:1
position: 1137801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1138000:1
position: 1138000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b677377-2f46-49ba-b344-dd838db84549
SIO_000300: 1
SIO_000628: feature:1137801-1138000:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1378714..1378913
location: region:1378714-1378913:1
BFO_0000051: feature:1378714-1378913:1:region
SIO_000974: 06d470c1-a1bf-47dd-82ba-1727c2f2d4a4

position:1378714:1
position: 1378714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1378913:1
position: 1378913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06d470c1-a1bf-47dd-82ba-1727c2f2d4a4
SIO_000300: 1
SIO_000628: feature:1378714-1378913:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3447214..3447413
location: region:3447214-3447413:1
BFO_0000051: feature:3447214-3447413:1:region
SIO_000974: db685c43-1ce0-4da3-a50f-d36a40ad6a7f

position:3447214:1
position: 3447214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3447413:1
position: 3447413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db685c43-1ce0-4da3-a50f-d36a40ad6a7f
SIO_000300: 1
SIO_000628: feature:3447214-3447413:1:region

Lysandra coridon genome assembly, chromosome: 75.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 75.
sequence version: HG992130.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4679359
topology: linear
RO_0000086: SO_0000987
location: 1..4679359
location: region:1-4679359:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4679359:1
position: 4679359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4679359:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 75
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2611731..2611930
location: region:2611731-2611930:1
BFO_0000051: feature:2611731-2611930:1:region
SIO_000974: 5f470ca0-9655-45ed-b101-3f5ceda1d1da

position:2611731:1
position: 2611731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2611930:1
position: 2611930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f470ca0-9655-45ed-b101-3f5ceda1d1da
SIO_000300: 1
SIO_000628: feature:2611731-2611930:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3194792..3194991
location: region:3194792-3194991:1
BFO_0000051: feature:3194792-3194991:1:region
SIO_000974: 4648ac2a-1a75-4202-bb1c-5212acbd933e

position:3194792:1
position: 3194792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3194991:1
position: 3194991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4648ac2a-1a75-4202-bb1c-5212acbd933e
SIO_000300: 1
SIO_000628: feature:3194792-3194991:1:region

Lysandra coridon genome assembly, chromosome: 76.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 76.
sequence version: HG992131.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4666103
topology: linear
RO_0000086: SO_0000987
location: 1..4666103
location: region:1-4666103:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4666103:1
position: 4666103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4666103:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 76
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2324544..2324743
location: region:2324544-2324743:1
BFO_0000051: feature:2324544-2324743:1:region
SIO_000974: c3790de9-11bb-4605-9e6d-232a9a2640b0

position:2324544:1
position: 2324544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2324743:1
position: 2324743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3790de9-11bb-4605-9e6d-232a9a2640b0
SIO_000300: 1
SIO_000628: feature:2324544-2324743:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3464986..3465185
location: region:3464986-3465185:1
BFO_0000051: feature:3464986-3465185:1:region
SIO_000974: cb688450-04a8-4783-b360-8ccb565c7464

position:3464986:1
position: 3464986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3465185:1
position: 3465185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb688450-04a8-4783-b360-8ccb565c7464
SIO_000300: 1
SIO_000628: feature:3464986-3465185:1:region

Lysandra coridon genome assembly, chromosome: 77.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 77.
sequence version: HG992132.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4460138
topology: linear
RO_0000086: SO_0000987
location: 1..4460138
location: region:1-4460138:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4460138:1
position: 4460138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4460138:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 77
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1485843..1486342
location: region:1485843-1486342:1
BFO_0000051: feature:1485843-1486342:1:region
SIO_000974: 65bfcdd1-8f51-4b09-a644-c65a627fa0a3

position:1485843:1
position: 1485843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1486342:1
position: 1486342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65bfcdd1-8f51-4b09-a644-c65a627fa0a3
SIO_000300: 1
SIO_000628: feature:1485843-1486342:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2539509..2539708
location: region:2539509-2539708:1
BFO_0000051: feature:2539509-2539708:1:region
SIO_000974: 35d4530e-ab3d-4000-83bb-98b17654eb65

position:2539509:1
position: 2539509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2539708:1
position: 2539708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35d4530e-ab3d-4000-83bb-98b17654eb65
SIO_000300: 1
SIO_000628: feature:2539509-2539708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2616147..2616346
location: region:2616147-2616346:1
BFO_0000051: feature:2616147-2616346:1:region
SIO_000974: c5b79efc-5b25-4466-886b-79ac2970f0eb

position:2616147:1
position: 2616147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2616346:1
position: 2616346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5b79efc-5b25-4466-886b-79ac2970f0eb
SIO_000300: 1
SIO_000628: feature:2616147-2616346:1:region

Lysandra coridon genome assembly, chromosome: 78.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 78.
sequence version: HG992133.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4449434
topology: linear
RO_0000086: SO_0000987
location: 1..4449434
location: region:1-4449434:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4449434:1
position: 4449434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4449434:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 78
mol type: genomic DNA

Lysandra coridon genome assembly, chromosome: 79.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 79.
sequence version: HG992134.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4416403
topology: linear
RO_0000086: SO_0000987
location: 1..4416403
location: region:1-4416403:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4416403:1
position: 4416403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4416403:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 79
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3104308..3104807
location: region:3104308-3104807:1
BFO_0000051: feature:3104308-3104807:1:region
SIO_000974: b4d51655-9a62-4e47-b432-917dc0aef264

position:3104308:1
position: 3104308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3104807:1
position: 3104807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4d51655-9a62-4e47-b432-917dc0aef264
SIO_000300: 1
SIO_000628: feature:3104308-3104807:1:region

Lysandra coridon genome assembly, chromosome: 80.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 80.
sequence version: HG992135.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4369755
topology: linear
RO_0000086: SO_0000987
location: 1..4369755
location: region:1-4369755:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4369755:1
position: 4369755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4369755:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 80
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3384287..3384486
location: region:3384287-3384486:1
BFO_0000051: feature:3384287-3384486:1:region
SIO_000974: 99831aae-bd6f-405c-aaf6-ad11837e7d03

position:3384287:1
position: 3384287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3384486:1
position: 3384486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

99831aae-bd6f-405c-aaf6-ad11837e7d03
SIO_000300: 1
SIO_000628: feature:3384287-3384486:1:region

Lysandra coridon genome assembly, chromosome: 81.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 81.
sequence version: HG992136.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4343187
topology: linear
RO_0000086: SO_0000987
location: 1..4343187
location: region:1-4343187:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4343187:1
position: 4343187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4343187:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 81
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1611348..1611547
location: region:1611348-1611547:1
BFO_0000051: feature:1611348-1611547:1:region
SIO_000974: bd38c2c9-8d4e-4935-85e5-981885b9a7b9

position:1611348:1
position: 1611348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1611547:1
position: 1611547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd38c2c9-8d4e-4935-85e5-981885b9a7b9
SIO_000300: 1
SIO_000628: feature:1611348-1611547:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3174694..3174893
location: region:3174694-3174893:1
BFO_0000051: feature:3174694-3174893:1:region
SIO_000974: 20fc7c8e-dad9-4409-a10b-4adee8a2c2a9

position:3174694:1
position: 3174694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3174893:1
position: 3174893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

20fc7c8e-dad9-4409-a10b-4adee8a2c2a9
SIO_000300: 1
SIO_000628: feature:3174694-3174893:1:region

Lysandra coridon genome assembly, chromosome: 82.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 82.
sequence version: HG992137.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4222667
topology: linear
RO_0000086: SO_0000987
location: 1..4222667
location: region:1-4222667:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4222667:1
position: 4222667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4222667:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 82
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 947844..948043
location: region:947844-948043:1
BFO_0000051: feature:947844-948043:1:region
SIO_000974: 28284711-dac7-42d2-91a6-67790b4329fc

position:947844:1
position: 947844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:948043:1
position: 948043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

28284711-dac7-42d2-91a6-67790b4329fc
SIO_000300: 1
SIO_000628: feature:947844-948043:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1027477..1027676
location: region:1027477-1027676:1
BFO_0000051: feature:1027477-1027676:1:region
SIO_000974: ceeb229b-2a35-4daf-8940-c8af390322f1

position:1027477:1
position: 1027477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027676:1
position: 1027676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceeb229b-2a35-4daf-8940-c8af390322f1
SIO_000300: 1
SIO_000628: feature:1027477-1027676:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1860507..1860706
location: region:1860507-1860706:1
BFO_0000051: feature:1860507-1860706:1:region
SIO_000974: c6d02432-ca44-4f14-969b-35979978d893

position:1860507:1
position: 1860507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1860706:1
position: 1860706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c6d02432-ca44-4f14-969b-35979978d893
SIO_000300: 1
SIO_000628: feature:1860507-1860706:1:region

Lysandra coridon genome assembly, chromosome: 83.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 83.
sequence version: HG992138.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4120428
topology: linear
RO_0000086: SO_0000987
location: 1..4120428
location: region:1-4120428:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4120428:1
position: 4120428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4120428:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 83
mol type: genomic DNA

Lysandra coridon genome assembly, chromosome: 84.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 84.
sequence version: HG992139.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4032828
topology: linear
RO_0000086: SO_0000987
location: 1..4032828
location: region:1-4032828:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4032828:1
position: 4032828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4032828:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 84
mol type: genomic DNA

Lysandra coridon genome assembly, chromosome: 85.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 85.
sequence version: HG992140.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 3940147
topology: linear
RO_0000086: SO_0000987
location: 1..3940147
location: region:1-3940147:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3940147:1
position: 3940147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3940147:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 85
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1021607..1021806
location: region:1021607-1021806:1
BFO_0000051: feature:1021607-1021806:1:region
SIO_000974: e92f6da7-ee7d-4d90-a313-eaf12e4dce50

position:1021607:1
position: 1021607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1021806:1
position: 1021806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e92f6da7-ee7d-4d90-a313-eaf12e4dce50
SIO_000300: 1
SIO_000628: feature:1021607-1021806:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1921511..1921710
location: region:1921511-1921710:1
BFO_0000051: feature:1921511-1921710:1:region
SIO_000974: 1259ffb9-3294-4123-ad9d-1c7241e2e5ae

position:1921511:1
position: 1921511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1921710:1
position: 1921710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1259ffb9-3294-4123-ad9d-1c7241e2e5ae
SIO_000300: 1
SIO_000628: feature:1921511-1921710:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2314644..2314843
location: region:2314644-2314843:1
BFO_0000051: feature:2314644-2314843:1:region
SIO_000974: 133f4edb-c26f-401d-b84f-80daeba74f4e

position:2314644:1
position: 2314644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2314843:1
position: 2314843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

133f4edb-c26f-401d-b84f-80daeba74f4e
SIO_000300: 1
SIO_000628: feature:2314644-2314843:1:region

Lysandra coridon genome assembly, chromosome: 86.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 86.
sequence version: HG992141.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 3739679
topology: linear
RO_0000086: SO_0000987
location: 1..3739679
location: region:1-3739679:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3739679:1
position: 3739679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3739679:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 86
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1568241..1568440
location: region:1568241-1568440:1
BFO_0000051: feature:1568241-1568440:1:region
SIO_000974: 57977bd9-2011-4e1d-914a-00773e3f9ef6

position:1568241:1
position: 1568241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1568440:1
position: 1568440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57977bd9-2011-4e1d-914a-00773e3f9ef6
SIO_000300: 1
SIO_000628: feature:1568241-1568440:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1665573..1665772
location: region:1665573-1665772:1
BFO_0000051: feature:1665573-1665772:1:region
SIO_000974: 707087bd-f8b1-48a8-99ea-246ea5ec7f01

position:1665573:1
position: 1665573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1665772:1
position: 1665772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

707087bd-f8b1-48a8-99ea-246ea5ec7f01
SIO_000300: 1
SIO_000628: feature:1665573-1665772:1:region

Lysandra coridon genome assembly, chromosome: 87.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 87.
sequence version: HG992142.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 3628099
topology: linear
RO_0000086: SO_0000987
location: 1..3628099
location: region:1-3628099:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3628099:1
position: 3628099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3628099:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 87
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 790404..790603
location: region:790404-790603:1
BFO_0000051: feature:790404-790603:1:region
SIO_000974: a1b6f201-6c56-416d-a92d-64c927bbeb61

position:790404:1
position: 790404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:790603:1
position: 790603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a1b6f201-6c56-416d-a92d-64c927bbeb61
SIO_000300: 1
SIO_000628: feature:790404-790603:1:region

Lysandra coridon genome assembly, chromosome: 88.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 88.
sequence version: HG992143.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 3491540
topology: linear
RO_0000086: SO_0000987
location: 1..3491540
location: region:1-3491540:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3491540:1
position: 3491540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3491540:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 88
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1545749..1545948
location: region:1545749-1545948:1
BFO_0000051: feature:1545749-1545948:1:region
SIO_000974: 7b93e9e6-d014-412d-aabd-508f3a759fd8

position:1545749:1
position: 1545749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1545948:1
position: 1545948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b93e9e6-d014-412d-aabd-508f3a759fd8
SIO_000300: 1
SIO_000628: feature:1545749-1545948:1:region

Lysandra coridon genome assembly, chromosome: 89.
type: Entry
definition: Lysandra coridon genome assembly, chromosome: 89.
sequence version: HG992144.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 3166870
topology: linear
RO_0000086: SO_0000987
location: 1..3166870
location: region:1-3166870:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3166870:1
position: 3166870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3166870:1:source
BFO_0000050: sequence
organism: Lysandra coridon
chromosome: 89
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 268709
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 500001..500200
location: region:500001-500200:1
BFO_0000051: feature:500001-500200:1:region
SIO_000974: b9d0f814-c672-476e-a718-447749cf87b3

position:500001:1
position: 500001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500200:1
position: 500200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9d0f814-c672-476e-a718-447749cf87b3
SIO_000300: 1
SIO_000628: feature:500001-500200:1:region

Lysandra coridon genome assembly, organelle: mitochondrion.
type: Entry
definition: Lysandra coridon genome assembly, organelle: mitochondrion.
sequence version: HG992145.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: mitochondrion Lysandra coridon
organism: Lysandra coridon
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15437
topology: linear
RO_0000086: SO_0000987
location: 1..15437
location: region:1-15437:1
RO_0002162: 268709

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15437:1
position: 15437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15437:1:source
BFO_0000050: sequence
organism: Lysandra coridon
organelle: mitochondrion
mol type: genomic DNA

Laothoe populi genome assembly, chromosome: 1.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 1.
sequence version: HG992146.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29548384
topology: linear
RO_0000086: SO_0000987
location: 1..29548384
location: region:1-29548384:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29548384:1
position: 29548384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29548384:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 1
mol type: genomic DNA

522836
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 1329431..1329530
location: region:1329431-1329530:1
BFO_0000051: feature:1329431-1329530:1:region
SIO_000974: 088041b9-5f76-423f-a929-7e217fe75923

position:1329431:1
position: 1329431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1329530:1
position: 1329530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

088041b9-5f76-423f-a929-7e217fe75923
SIO_000300: 1
SIO_000628: feature:1329431-1329530:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4161934..4162133
location: region:4161934-4162133:1
BFO_0000051: feature:4161934-4162133:1:region
SIO_000974: ec232416-f337-4632-a5ac-45db143235d2

position:4161934:1
position: 4161934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4162133:1
position: 4162133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec232416-f337-4632-a5ac-45db143235d2
SIO_000300: 1
SIO_000628: feature:4161934-4162133:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28327979..28328178
location: region:28327979-28328178:1
BFO_0000051: feature:28327979-28328178:1:region
SIO_000974: d9589cf2-4416-469d-a428-5f84dc848c7a

position:28327979:1
position: 28327979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28328178:1
position: 28328178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9589cf2-4416-469d-a428-5f84dc848c7a
SIO_000300: 1
SIO_000628: feature:28327979-28328178:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28747128..28747327
location: region:28747128-28747327:1
BFO_0000051: feature:28747128-28747327:1:region
SIO_000974: 0953b6ca-7f0a-460c-b533-e8b942f2fa15

position:28747128:1
position: 28747128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28747327:1
position: 28747327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0953b6ca-7f0a-460c-b533-e8b942f2fa15
SIO_000300: 1
SIO_000628: feature:28747128-28747327:1:region

Laothoe populi genome assembly, chromosome: 2.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 2.
sequence version: HG992147.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26138537
topology: linear
RO_0000086: SO_0000987
location: 1..26138537
location: region:1-26138537:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26138537:1
position: 26138537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26138537:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9042146..9042345
location: region:9042146-9042345:1
BFO_0000051: feature:9042146-9042345:1:region
SIO_000974: 161c4ebf-7fd0-44e3-9e2b-18e1f16503da

position:9042146:1
position: 9042146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9042345:1
position: 9042345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

161c4ebf-7fd0-44e3-9e2b-18e1f16503da
SIO_000300: 1
SIO_000628: feature:9042146-9042345:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10414507..10414706
location: region:10414507-10414706:1
BFO_0000051: feature:10414507-10414706:1:region
SIO_000974: 9f5b1756-d988-4624-889d-ba941eb11220

position:10414507:1
position: 10414507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10414706:1
position: 10414706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f5b1756-d988-4624-889d-ba941eb11220
SIO_000300: 1
SIO_000628: feature:10414507-10414706:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 12886784..12887283
location: region:12886784-12887283:1
BFO_0000051: feature:12886784-12887283:1:region
SIO_000974: 6516a553-a6fc-4a92-96d0-8fe00aa643f0

position:12886784:1
position: 12886784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12887283:1
position: 12887283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6516a553-a6fc-4a92-96d0-8fe00aa643f0
SIO_000300: 1
SIO_000628: feature:12886784-12887283:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 15215723..15216222
location: region:15215723-15216222:1
BFO_0000051: feature:15215723-15216222:1:region
SIO_000974: 6bff1095-2390-4275-80b9-679e596da66b

position:15215723:1
position: 15215723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15216222:1
position: 15216222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bff1095-2390-4275-80b9-679e596da66b
SIO_000300: 1
SIO_000628: feature:15215723-15216222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20523011..20523210
location: region:20523011-20523210:1
BFO_0000051: feature:20523011-20523210:1:region
SIO_000974: fec84fbb-876f-4c7f-abb8-0b8de0af3eba

position:20523011:1
position: 20523011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20523210:1
position: 20523210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fec84fbb-876f-4c7f-abb8-0b8de0af3eba
SIO_000300: 1
SIO_000628: feature:20523011-20523210:1:region

Laothoe populi genome assembly, chromosome: 3.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 3.
sequence version: HG992148.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24612663
topology: linear
RO_0000086: SO_0000987
location: 1..24612663
location: region:1-24612663:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24612663:1
position: 24612663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24612663:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5362948..5363147
location: region:5362948-5363147:1
BFO_0000051: feature:5362948-5363147:1:region
SIO_000974: f40a3257-d6f9-4ce6-b843-c58b6ba39f69

position:5362948:1
position: 5362948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5363147:1
position: 5363147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f40a3257-d6f9-4ce6-b843-c58b6ba39f69
SIO_000300: 1
SIO_000628: feature:5362948-5363147:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8372569..8373068
location: region:8372569-8373068:1
BFO_0000051: feature:8372569-8373068:1:region
SIO_000974: 56af244b-bc49-444f-82c3-ef6612e5e68c

position:8372569:1
position: 8372569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8373068:1
position: 8373068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56af244b-bc49-444f-82c3-ef6612e5e68c
SIO_000300: 1
SIO_000628: feature:8372569-8373068:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12879828..12880027
location: region:12879828-12880027:1
BFO_0000051: feature:12879828-12880027:1:region
SIO_000974: 889bfb9f-d488-4ce5-91b9-ddadd10db935

position:12879828:1
position: 12879828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12880027:1
position: 12880027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

889bfb9f-d488-4ce5-91b9-ddadd10db935
SIO_000300: 1
SIO_000628: feature:12879828-12880027:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 19940212..19940711
location: region:19940212-19940711:1
BFO_0000051: feature:19940212-19940711:1:region
SIO_000974: ff584c43-6a62-411c-bbce-0761dbde508a

position:19940212:1
position: 19940212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19940711:1
position: 19940711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff584c43-6a62-411c-bbce-0761dbde508a
SIO_000300: 1
SIO_000628: feature:19940212-19940711:1:region

Laothoe populi genome assembly, chromosome: Z.
type: Entry
definition: Laothoe populi genome assembly, chromosome: Z.
sequence version: HG992149.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24184896
topology: linear
RO_0000086: SO_0000987
location: 1..24184896
location: region:1-24184896:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24184896:1
position: 24184896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24184896:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: Z
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 253406..253905
location: region:253406-253905:1
BFO_0000051: feature:253406-253905:1:region
SIO_000974: 8a52a93e-03ad-43ae-97fe-c862884df585

position:253406:1
position: 253406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:253905:1
position: 253905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a52a93e-03ad-43ae-97fe-c862884df585
SIO_000300: 1
SIO_000628: feature:253406-253905:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 366568..367067
location: region:366568-367067:1
BFO_0000051: feature:366568-367067:1:region
SIO_000974: f34aee59-6f3e-48ba-bb12-ac81d1e57146

position:366568:1
position: 366568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367067:1
position: 367067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f34aee59-6f3e-48ba-bb12-ac81d1e57146
SIO_000300: 1
SIO_000628: feature:366568-367067:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4494454..4494953
location: region:4494454-4494953:1
BFO_0000051: feature:4494454-4494953:1:region
SIO_000974: 04469f9c-4961-4df2-8965-2161e6044198

position:4494454:1
position: 4494454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4494953:1
position: 4494953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

04469f9c-4961-4df2-8965-2161e6044198
SIO_000300: 1
SIO_000628: feature:4494454-4494953:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 13416621..13417120
location: region:13416621-13417120:1
BFO_0000051: feature:13416621-13417120:1:region
SIO_000974: 607530e0-dc54-4590-96b5-442d7d464326

position:13416621:1
position: 13416621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13417120:1
position: 13417120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

607530e0-dc54-4590-96b5-442d7d464326
SIO_000300: 1
SIO_000628: feature:13416621-13417120:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 19252812..19253311
location: region:19252812-19253311:1
BFO_0000051: feature:19252812-19253311:1:region
SIO_000974: 4720b9aa-166f-4618-b4e9-f5a52e6ffb0b

position:19252812:1
position: 19252812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19253311:1
position: 19253311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4720b9aa-166f-4618-b4e9-f5a52e6ffb0b
SIO_000300: 1
SIO_000628: feature:19252812-19253311:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24074900..24075099
location: region:24074900-24075099:1
BFO_0000051: feature:24074900-24075099:1:region
SIO_000974: 00bb8b1c-42a2-47da-b127-e3c27225513e

position:24074900:1
position: 24074900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24075099:1
position: 24075099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00bb8b1c-42a2-47da-b127-e3c27225513e
SIO_000300: 1
SIO_000628: feature:24074900-24075099:1:region

Laothoe populi genome assembly, chromosome: 4.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 4.
sequence version: HG992150.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23325374
topology: linear
RO_0000086: SO_0000987
location: 1..23325374
location: region:1-23325374:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23325374:1
position: 23325374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23325374:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 18600745..18601244
location: region:18600745-18601244:1
BFO_0000051: feature:18600745-18601244:1:region
SIO_000974: 4b15bc40-3bbe-4257-b0b7-9ee2178c54c2

position:18600745:1
position: 18600745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18601244:1
position: 18601244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b15bc40-3bbe-4257-b0b7-9ee2178c54c2
SIO_000300: 1
SIO_000628: feature:18600745-18601244:1:region

Laothoe populi genome assembly, chromosome: 5.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 5.
sequence version: HG992151.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23181524
topology: linear
RO_0000086: SO_0000987
location: 1..23181524
location: region:1-23181524:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23181524:1
position: 23181524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23181524:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6875349..6875848
location: region:6875349-6875848:1
BFO_0000051: feature:6875349-6875848:1:region
SIO_000974: 30030604-36e1-4050-9573-eb64267d769d

position:6875349:1
position: 6875349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6875848:1
position: 6875848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

30030604-36e1-4050-9573-eb64267d769d
SIO_000300: 1
SIO_000628: feature:6875349-6875848:1:region

Laothoe populi genome assembly, chromosome: 6.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 6.
sequence version: HG992152.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22568932
topology: linear
RO_0000086: SO_0000987
location: 1..22568932
location: region:1-22568932:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22568932:1
position: 22568932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22568932:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4133320..4133519
location: region:4133320-4133519:1
BFO_0000051: feature:4133320-4133519:1:region
SIO_000974: 88fbf0ce-7f88-48b1-b76d-9de67ca8d6ac

position:4133320:1
position: 4133320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4133519:1
position: 4133519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88fbf0ce-7f88-48b1-b76d-9de67ca8d6ac
SIO_000300: 1
SIO_000628: feature:4133320-4133519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: unknown
gap type: unknown
BFO_0000050: sequence
location: 14374471..14374570
location: region:14374471-14374570:1
BFO_0000051: feature:14374471-14374570:1:region
SIO_000974: eb8cd5bb-5e5a-4670-80a6-11d526b44a5e

position:14374471:1
position: 14374471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14374570:1
position: 14374570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb8cd5bb-5e5a-4670-80a6-11d526b44a5e
SIO_000300: 1
SIO_000628: feature:14374471-14374570:1:region

Laothoe populi genome assembly, chromosome: 7.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 7.
sequence version: HG992153.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22068583
topology: linear
RO_0000086: SO_0000987
location: 1..22068583
location: region:1-22068583:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22068583:1
position: 22068583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22068583:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4367071..4367570
location: region:4367071-4367570:1
BFO_0000051: feature:4367071-4367570:1:region
SIO_000974: ec478512-f7d0-444f-bc17-8851098a7fb3

position:4367071:1
position: 4367071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4367570:1
position: 4367570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec478512-f7d0-444f-bc17-8851098a7fb3
SIO_000300: 1
SIO_000628: feature:4367071-4367570:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9969102..9969601
location: region:9969102-9969601:1
BFO_0000051: feature:9969102-9969601:1:region
SIO_000974: d47819f1-44d3-4d40-958e-10c593a092dd

position:9969102:1
position: 9969102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9969601:1
position: 9969601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d47819f1-44d3-4d40-958e-10c593a092dd
SIO_000300: 1
SIO_000628: feature:9969102-9969601:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17334001..17334200
location: region:17334001-17334200:1
BFO_0000051: feature:17334001-17334200:1:region
SIO_000974: 7b9bd9b7-2362-4445-8687-d3f71b8859cb

position:17334001:1
position: 17334001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17334200:1
position: 17334200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b9bd9b7-2362-4445-8687-d3f71b8859cb
SIO_000300: 1
SIO_000628: feature:17334001-17334200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17713015..17713214
location: region:17713015-17713214:1
BFO_0000051: feature:17713015-17713214:1:region
SIO_000974: b65dc616-d8d0-4879-9008-ce5e01349742

position:17713015:1
position: 17713015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17713214:1
position: 17713214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b65dc616-d8d0-4879-9008-ce5e01349742
SIO_000300: 1
SIO_000628: feature:17713015-17713214:1:region

Laothoe populi genome assembly, chromosome: 8.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 8.
sequence version: HG992154.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21625164
topology: linear
RO_0000086: SO_0000987
location: 1..21625164
location: region:1-21625164:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21625164:1
position: 21625164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21625164:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1820811..1821010
location: region:1820811-1821010:1
BFO_0000051: feature:1820811-1821010:1:region
SIO_000974: b22f9453-e28a-49be-9065-806d820174f5

position:1820811:1
position: 1820811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1821010:1
position: 1821010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b22f9453-e28a-49be-9065-806d820174f5
SIO_000300: 1
SIO_000628: feature:1820811-1821010:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6619023..6619522
location: region:6619023-6619522:1
BFO_0000051: feature:6619023-6619522:1:region
SIO_000974: 1fcce964-d840-4f44-b286-d20466247c66

position:6619023:1
position: 6619023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6619522:1
position: 6619522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fcce964-d840-4f44-b286-d20466247c66
SIO_000300: 1
SIO_000628: feature:6619023-6619522:1:region

Laothoe populi genome assembly, chromosome: 9.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 9.
sequence version: HG992155.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21581437
topology: linear
RO_0000086: SO_0000987
location: 1..21581437
location: region:1-21581437:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21581437:1
position: 21581437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21581437:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6846199..6846698
location: region:6846199-6846698:1
BFO_0000051: feature:6846199-6846698:1:region
SIO_000974: 3a9dd150-4373-4b7d-8a35-32d258d41b8f

position:6846199:1
position: 6846199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6846698:1
position: 6846698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a9dd150-4373-4b7d-8a35-32d258d41b8f
SIO_000300: 1
SIO_000628: feature:6846199-6846698:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11579958..11580457
location: region:11579958-11580457:1
BFO_0000051: feature:11579958-11580457:1:region
SIO_000974: 168b0ace-d932-4c6f-b397-51fb219ab540

position:11579958:1
position: 11579958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11580457:1
position: 11580457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

168b0ace-d932-4c6f-b397-51fb219ab540
SIO_000300: 1
SIO_000628: feature:11579958-11580457:1:region

Laothoe populi genome assembly, chromosome: 10.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 10.
sequence version: HG992156.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21426275
topology: linear
RO_0000086: SO_0000987
location: 1..21426275
location: region:1-21426275:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21426275:1
position: 21426275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21426275:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 10
mol type: genomic DNA

Laothoe populi genome assembly, chromosome: 11.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 11.
sequence version: HG992157.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21366582
topology: linear
RO_0000086: SO_0000987
location: 1..21366582
location: region:1-21366582:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21366582:1
position: 21366582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21366582:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1554830..1555029
location: region:1554830-1555029:1
BFO_0000051: feature:1554830-1555029:1:region
SIO_000974: f28aa304-40a7-449f-b4ec-b983613d95c8

position:1554830:1
position: 1554830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1555029:1
position: 1555029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f28aa304-40a7-449f-b4ec-b983613d95c8
SIO_000300: 1
SIO_000628: feature:1554830-1555029:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5959545..5960044
location: region:5959545-5960044:1
BFO_0000051: feature:5959545-5960044:1:region
SIO_000974: ee495b5f-5f81-4f27-8309-9da8463d437e

position:5959545:1
position: 5959545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5960044:1
position: 5960044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee495b5f-5f81-4f27-8309-9da8463d437e
SIO_000300: 1
SIO_000628: feature:5959545-5960044:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13692699..13692898
location: region:13692699-13692898:1
BFO_0000051: feature:13692699-13692898:1:region
SIO_000974: a7aa98d0-589f-489d-849f-34b7c50cf941

position:13692699:1
position: 13692699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13692898:1
position: 13692898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a7aa98d0-589f-489d-849f-34b7c50cf941
SIO_000300: 1
SIO_000628: feature:13692699-13692898:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14393448..14393647
location: region:14393448-14393647:1
BFO_0000051: feature:14393448-14393647:1:region
SIO_000974: b4625df6-40d2-4a0c-9441-4ca84a81c47d

position:14393448:1
position: 14393448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14393647:1
position: 14393647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4625df6-40d2-4a0c-9441-4ca84a81c47d
SIO_000300: 1
SIO_000628: feature:14393448-14393647:1:region

Laothoe populi genome assembly, chromosome: 12.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 12.
sequence version: HG992158.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21125926
topology: linear
RO_0000086: SO_0000987
location: 1..21125926
location: region:1-21125926:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21125926:1
position: 21125926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21125926:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4426669..4426868
location: region:4426669-4426868:1
BFO_0000051: feature:4426669-4426868:1:region
SIO_000974: cd8bd8e8-1bac-4141-85c1-bfb388076a16

position:4426669:1
position: 4426669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4426868:1
position: 4426868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cd8bd8e8-1bac-4141-85c1-bfb388076a16
SIO_000300: 1
SIO_000628: feature:4426669-4426868:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4719485..4719984
location: region:4719485-4719984:1
BFO_0000051: feature:4719485-4719984:1:region
SIO_000974: ff49af93-d3d4-4ad4-99a6-8d6e963d5782

position:4719485:1
position: 4719485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4719984:1
position: 4719984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff49af93-d3d4-4ad4-99a6-8d6e963d5782
SIO_000300: 1
SIO_000628: feature:4719485-4719984:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4811824..4812023
location: region:4811824-4812023:1
BFO_0000051: feature:4811824-4812023:1:region
SIO_000974: 52d41d84-f684-4a1b-8a8e-f4de7031dbc2

position:4811824:1
position: 4811824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4812023:1
position: 4812023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52d41d84-f684-4a1b-8a8e-f4de7031dbc2
SIO_000300: 1
SIO_000628: feature:4811824-4812023:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6652809..6653008
location: region:6652809-6653008:1
BFO_0000051: feature:6652809-6653008:1:region
SIO_000974: 7dacca4f-cc1b-4a12-8486-256b7b74128f

position:6652809:1
position: 6652809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6653008:1
position: 6653008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7dacca4f-cc1b-4a12-8486-256b7b74128f
SIO_000300: 1
SIO_000628: feature:6652809-6653008:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9918087..9918586
location: region:9918087-9918586:1
BFO_0000051: feature:9918087-9918586:1:region
SIO_000974: 995746be-9472-42fc-816c-c89a4bbeef2b

position:9918087:1
position: 9918087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9918586:1
position: 9918586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

995746be-9472-42fc-816c-c89a4bbeef2b
SIO_000300: 1
SIO_000628: feature:9918087-9918586:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 15991642..15992141
location: region:15991642-15992141:1
BFO_0000051: feature:15991642-15992141:1:region
SIO_000974: f5110a5d-b7e3-4eb0-b3e1-65ea8404a5a9

position:15991642:1
position: 15991642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15992141:1
position: 15992141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f5110a5d-b7e3-4eb0-b3e1-65ea8404a5a9
SIO_000300: 1
SIO_000628: feature:15991642-15992141:1:region

Laothoe populi genome assembly, chromosome: 13.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 13.
sequence version: HG992159.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20403216
topology: linear
RO_0000086: SO_0000987
location: 1..20403216
location: region:1-20403216:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20403216:1
position: 20403216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20403216:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9817368..9817567
location: region:9817368-9817567:1
BFO_0000051: feature:9817368-9817567:1:region
SIO_000974: 10d03789-1acd-4bad-af0b-09ca06973543

position:9817368:1
position: 9817368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9817567:1
position: 9817567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10d03789-1acd-4bad-af0b-09ca06973543
SIO_000300: 1
SIO_000628: feature:9817368-9817567:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12439191..12439390
location: region:12439191-12439390:1
BFO_0000051: feature:12439191-12439390:1:region
SIO_000974: d9433e46-5108-40fb-8558-064799f12d55

position:12439191:1
position: 12439191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12439390:1
position: 12439390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9433e46-5108-40fb-8558-064799f12d55
SIO_000300: 1
SIO_000628: feature:12439191-12439390:1:region

Laothoe populi genome assembly, chromosome: 14.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 14.
sequence version: HG992160.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20008986
topology: linear
RO_0000086: SO_0000987
location: 1..20008986
location: region:1-20008986:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20008986:1
position: 20008986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20008986:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3672761..3673260
location: region:3672761-3673260:1
BFO_0000051: feature:3672761-3673260:1:region
SIO_000974: 6fe8cb69-d211-4db2-bfc3-9004b9baec5d

position:3672761:1
position: 3672761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3673260:1
position: 3673260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fe8cb69-d211-4db2-bfc3-9004b9baec5d
SIO_000300: 1
SIO_000628: feature:3672761-3673260:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7092447..7092946
location: region:7092447-7092946:1
BFO_0000051: feature:7092447-7092946:1:region
SIO_000974: ec3a6c6e-787f-4f1f-bdbf-6e0e0de64182

position:7092447:1
position: 7092447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7092946:1
position: 7092946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec3a6c6e-787f-4f1f-bdbf-6e0e0de64182
SIO_000300: 1
SIO_000628: feature:7092447-7092946:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10140297..10140796
location: region:10140297-10140796:1
BFO_0000051: feature:10140297-10140796:1:region
SIO_000974: 0a327335-3f2c-4300-b6a5-1a29972cb534

position:10140297:1
position: 10140297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10140796:1
position: 10140796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a327335-3f2c-4300-b6a5-1a29972cb534
SIO_000300: 1
SIO_000628: feature:10140297-10140796:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19772612..19772811
location: region:19772612-19772811:1
BFO_0000051: feature:19772612-19772811:1:region
SIO_000974: 1735156c-7ad9-450d-b315-dd57064550c1

position:19772612:1
position: 19772612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19772811:1
position: 19772811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1735156c-7ad9-450d-b315-dd57064550c1
SIO_000300: 1
SIO_000628: feature:19772612-19772811:1:region

Laothoe populi genome assembly, chromosome: 15.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 15.
sequence version: HG992161.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19672860
topology: linear
RO_0000086: SO_0000987
location: 1..19672860
location: region:1-19672860:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19672860:1
position: 19672860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19672860:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5278324..5278823
location: region:5278324-5278823:1
BFO_0000051: feature:5278324-5278823:1:region
SIO_000974: 76ea9ab3-e5af-4573-af24-33c2cca1b535

position:5278324:1
position: 5278324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5278823:1
position: 5278823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76ea9ab3-e5af-4573-af24-33c2cca1b535
SIO_000300: 1
SIO_000628: feature:5278324-5278823:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13932739..13932938
location: region:13932739-13932938:1
BFO_0000051: feature:13932739-13932938:1:region
SIO_000974: ea7c6b88-c111-41aa-9f46-63091e2ebaa8

position:13932739:1
position: 13932739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13932938:1
position: 13932938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ea7c6b88-c111-41aa-9f46-63091e2ebaa8
SIO_000300: 1
SIO_000628: feature:13932739-13932938:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15302010..15302209
location: region:15302010-15302209:1
BFO_0000051: feature:15302010-15302209:1:region
SIO_000974: 880197c9-ac16-4813-a7e0-0911dcdbdef4

position:15302010:1
position: 15302010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15302209:1
position: 15302209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

880197c9-ac16-4813-a7e0-0911dcdbdef4
SIO_000300: 1
SIO_000628: feature:15302010-15302209:1:region

Laothoe populi genome assembly, chromosome: W.
type: Entry
definition: Laothoe populi genome assembly, chromosome: W.
sequence version: HG992162.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19391197
topology: linear
RO_0000086: SO_0000987
location: 1..19391197
location: region:1-19391197:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19391197:1
position: 19391197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19391197:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 333831..334330
location: region:333831-334330:1
BFO_0000051: feature:333831-334330:1:region
SIO_000974: ec6c628e-4453-43a2-b242-7d377ca3bcc4

position:333831:1
position: 333831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334330:1
position: 334330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec6c628e-4453-43a2-b242-7d377ca3bcc4
SIO_000300: 1
SIO_000628: feature:333831-334330:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1681503..1682002
location: region:1681503-1682002:1
BFO_0000051: feature:1681503-1682002:1:region
SIO_000974: 93f0a768-26cd-48d9-847c-3102855d17b2

position:1681503:1
position: 1681503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1682002:1
position: 1682002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1681503-1682002:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5346036..5346235
location: region:5346036-5346235:1
BFO_0000051: feature:5346036-5346235:1:region
SIO_000974: 4cb36546-abdb-47a8-b5fe-a2fce0847866

position:5346036:1
position: 5346036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5346235:1
position: 5346235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5346036-5346235:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5910778..5910977
location: region:5910778-5910977:1
BFO_0000051: feature:5910778-5910977:1:region
SIO_000974: be40dbf8-cc17-4703-a756-bf0ba6c719fa

position:5910778:1
position: 5910778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5910977:1
position: 5910977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5910778-5910977:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6589290..6589489
location: region:6589290-6589489:1
BFO_0000051: feature:6589290-6589489:1:region
SIO_000974: 2b374653-314b-48ab-a052-ed70b91e303e

position:6589290:1
position: 6589290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6589489:1
position: 6589489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b374653-314b-48ab-a052-ed70b91e303e
SIO_000300: 1
SIO_000628: feature:6589290-6589489:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6946891..6947090
location: region:6946891-6947090:1
BFO_0000051: feature:6946891-6947090:1:region
SIO_000974: 1bde920a-79b8-4d0c-bc5c-3b2642af6f8c

position:6946891:1
position: 6946891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6947090:1
position: 6947090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6946891-6947090:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10195788..10195987
location: region:10195788-10195987:1
BFO_0000051: feature:10195788-10195987:1:region
SIO_000974: e08199cf-7ee5-450e-8766-688a9166a58d

position:10195788:1
position: 10195788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10195987:1
position: 10195987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10195788-10195987:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10390330..10390529
location: region:10390330-10390529:1
BFO_0000051: feature:10390330-10390529:1:region
SIO_000974: a2c856fd-082f-4a62-9801-6895eef9804f

position:10390330:1
position: 10390330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10390529:1
position: 10390529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10390330-10390529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10497164..10497363
location: region:10497164-10497363:1
BFO_0000051: feature:10497164-10497363:1:region
SIO_000974: e9d1258e-9adb-40ff-a8e5-4fa832a3773f

position:10497164:1
position: 10497164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10497363:1
position: 10497363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10497164-10497363:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10959228..10959427
location: region:10959228-10959427:1
BFO_0000051: feature:10959228-10959427:1:region
SIO_000974: 69290af2-5351-4fab-a133-bd09e9997a21

position:10959228:1
position: 10959228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10959427:1
position: 10959427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10959228-10959427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12530353..12530552
location: region:12530353-12530552:1
BFO_0000051: feature:12530353-12530552:1:region
SIO_000974: c7fca6e3-cb5e-4440-b88e-5a7d294df2e9

position:12530353:1
position: 12530353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12530552:1
position: 12530552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12530353-12530552:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15841457..15841656
location: region:15841457-15841656:1
BFO_0000051: feature:15841457-15841656:1:region
SIO_000974: d0546074-cd4b-4aad-b42a-67084b081322

position:15841457:1
position: 15841457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15841656:1
position: 15841656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15841457-15841656:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16903963..16904162
location: region:16903963-16904162:1
BFO_0000051: feature:16903963-16904162:1:region
SIO_000974: 2b818e39-c36e-42a5-bcea-cda5a3d50916

position:16903963:1
position: 16903963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16904162:1
position: 16904162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:16903963-16904162:1:region

Laothoe populi genome assembly, chromosome: 16.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 16.
sequence version: HG992163.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19033455
topology: linear
RO_0000086: SO_0000987
location: 1..19033455
location: region:1-19033455:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19033455:1
position: 19033455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19033455:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6631132..6631331
location: region:6631132-6631331:1
BFO_0000051: feature:6631132-6631331:1:region
SIO_000974: e4b59db0-58e1-43b6-895b-d89848827653

position:6631132:1
position: 6631132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6631331:1
position: 6631331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6631132-6631331:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6780520..6780719
location: region:6780520-6780719:1
BFO_0000051: feature:6780520-6780719:1:region
SIO_000974: cfa9f34c-f91c-4272-8335-75c68f5b0e61

position:6780520:1
position: 6780520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6780719:1
position: 6780719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6780520-6780719:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7894346..7894545
location: region:7894346-7894545:1
BFO_0000051: feature:7894346-7894545:1:region
SIO_000974: 6e3b95a8-7cd8-426f-9ab0-acd551329d96

position:7894346:1
position: 7894346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7894545:1
position: 7894545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7894346-7894545:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8145868..8146067
location: region:8145868-8146067:1
BFO_0000051: feature:8145868-8146067:1:region
SIO_000974: 2cbb66b5-a474-4c9e-9e09-f58fee1690dd

position:8145868:1
position: 8145868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8146067:1
position: 8146067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8145868-8146067:1:region

Laothoe populi genome assembly, chromosome: 17.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 17.
sequence version: HG992164.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18922890
topology: linear
RO_0000086: SO_0000987
location: 1..18922890
location: region:1-18922890:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18922890:1
position: 18922890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18922890:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5152815..5153314
location: region:5152815-5153314:1
BFO_0000051: feature:5152815-5153314:1:region
SIO_000974: a348ace8-d8f4-45ab-891d-8ceaa49e0d77

position:5152815:1
position: 5152815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5153314:1
position: 5153314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a348ace8-d8f4-45ab-891d-8ceaa49e0d77
SIO_000300: 1
SIO_000628: feature:5152815-5153314:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7652903..7653402
location: region:7652903-7653402:1
BFO_0000051: feature:7652903-7653402:1:region
SIO_000974: 6be6456b-7241-46e8-b974-390788ab83f2

position:7652903:1
position: 7652903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7653402:1
position: 7653402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7652903-7653402:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10443581..10443780
location: region:10443581-10443780:1
BFO_0000051: feature:10443581-10443780:1:region
SIO_000974: f81b07b4-78d2-48ec-98ab-31815efae533

position:10443581:1
position: 10443581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10443780:1
position: 10443780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f81b07b4-78d2-48ec-98ab-31815efae533
SIO_000300: 1
SIO_000628: feature:10443581-10443780:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10737103..10737302
location: region:10737103-10737302:1
BFO_0000051: feature:10737103-10737302:1:region
SIO_000974: e4d4e7a6-c5ff-4bec-8319-80f116f02cc6

position:10737103:1
position: 10737103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10737302:1
position: 10737302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4d4e7a6-c5ff-4bec-8319-80f116f02cc6
SIO_000300: 1
SIO_000628: feature:10737103-10737302:1:region

Laothoe populi genome assembly, chromosome: 18.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 18.
sequence version: HG992165.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18591482
topology: linear
RO_0000086: SO_0000987
location: 1..18591482
location: region:1-18591482:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18591482:1
position: 18591482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18591482:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6242149..6242648
location: region:6242149-6242648:1
BFO_0000051: feature:6242149-6242648:1:region
SIO_000974: 60c33a29-2373-4d43-b264-e36299fa00ce

position:6242149:1
position: 6242149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6242648:1
position: 6242648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60c33a29-2373-4d43-b264-e36299fa00ce
SIO_000300: 1
SIO_000628: feature:6242149-6242648:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: unknown
gap type: unknown
BFO_0000050: sequence
location: 10548765..10548864
location: region:10548765-10548864:1
BFO_0000051: feature:10548765-10548864:1:region
SIO_000974: 251f5966-7c4f-4ddb-a87b-2348a74d8e5c

position:10548765:1
position: 10548765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10548864:1
position: 10548864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

251f5966-7c4f-4ddb-a87b-2348a74d8e5c
SIO_000300: 1
SIO_000628: feature:10548765-10548864:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 12505410..12505909
location: region:12505410-12505909:1
BFO_0000051: feature:12505410-12505909:1:region
SIO_000974: 93ccc1f4-b636-411c-992b-2e9aa3d45e59

position:12505410:1
position: 12505410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12505909:1
position: 12505909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

93ccc1f4-b636-411c-992b-2e9aa3d45e59
SIO_000300: 1
SIO_000628: feature:12505410-12505909:1:region

Laothoe populi genome assembly, chromosome: 19.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 19.
sequence version: HG992166.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18415346
topology: linear
RO_0000086: SO_0000987
location: 1..18415346
location: region:1-18415346:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18415346:1
position: 18415346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18415346:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: unknown
gap type: unknown
BFO_0000050: sequence
location: 10441662..10441761
location: region:10441662-10441761:1
BFO_0000051: feature:10441662-10441761:1:region
SIO_000974: 2aa54589-17f2-4b89-8990-9a264decc71f

position:10441662:1
position: 10441662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10441761:1
position: 10441761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2aa54589-17f2-4b89-8990-9a264decc71f
SIO_000300: 1
SIO_000628: feature:10441662-10441761:1:region

Laothoe populi genome assembly, chromosome: 20.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 20.
sequence version: HG992167.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18174635
topology: linear
RO_0000086: SO_0000987
location: 1..18174635
location: region:1-18174635:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18174635:1
position: 18174635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18174635:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8039297..8039496
location: region:8039297-8039496:1
BFO_0000051: feature:8039297-8039496:1:region
SIO_000974: 6aa11e7d-b1bb-45b7-8874-a873f3e370e5

position:8039297:1
position: 8039297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8039496:1
position: 8039496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6aa11e7d-b1bb-45b7-8874-a873f3e370e5
SIO_000300: 1
SIO_000628: feature:8039297-8039496:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8923166..8923365
location: region:8923166-8923365:1
BFO_0000051: feature:8923166-8923365:1:region
SIO_000974: 335b3827-3e66-4fc8-aa86-b767b8f1a59d

position:8923166:1
position: 8923166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8923365:1
position: 8923365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

335b3827-3e66-4fc8-aa86-b767b8f1a59d
SIO_000300: 1
SIO_000628: feature:8923166-8923365:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12788026..12788225
location: region:12788026-12788225:1
BFO_0000051: feature:12788026-12788225:1:region
SIO_000974: 1f8b672f-8a0b-451e-b1cc-82722e7b027d

position:12788026:1
position: 12788026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12788225:1
position: 12788225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f8b672f-8a0b-451e-b1cc-82722e7b027d
SIO_000300: 1
SIO_000628: feature:12788026-12788225:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13126937..13127136
location: region:13126937-13127136:1
BFO_0000051: feature:13126937-13127136:1:region
SIO_000974: 304dc617-e202-4db9-ab89-8c39ef66f395

position:13126937:1
position: 13126937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13127136:1
position: 13127136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

304dc617-e202-4db9-ab89-8c39ef66f395
SIO_000300: 1
SIO_000628: feature:13126937-13127136:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13435323..13435522
location: region:13435323-13435522:1
BFO_0000051: feature:13435323-13435522:1:region
SIO_000974: 792a6870-69cc-44af-950d-bf09e363bb7d

position:13435323:1
position: 13435323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13435522:1
position: 13435522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

792a6870-69cc-44af-950d-bf09e363bb7d
SIO_000300: 1
SIO_000628: feature:13435323-13435522:1:region

Laothoe populi genome assembly, chromosome: 21.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 21.
sequence version: HG992168.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17785902
topology: linear
RO_0000086: SO_0000987
location: 1..17785902
location: region:1-17785902:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17785902:1
position: 17785902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17785902:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 642923..643122
location: region:642923-643122:1
BFO_0000051: feature:642923-643122:1:region
SIO_000974: b78089c5-9e3e-42a0-9403-221d7ab33876

position:642923:1
position: 642923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:643122:1
position: 643122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b78089c5-9e3e-42a0-9403-221d7ab33876
SIO_000300: 1
SIO_000628: feature:642923-643122:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3662895..3663094
location: region:3662895-3663094:1
BFO_0000051: feature:3662895-3663094:1:region
SIO_000974: 531e16e2-0084-44f2-8080-7095a60a54f5

position:3662895:1
position: 3662895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3663094:1
position: 3663094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

531e16e2-0084-44f2-8080-7095a60a54f5
SIO_000300: 1
SIO_000628: feature:3662895-3663094:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9394607..9394806
location: region:9394607-9394806:1
BFO_0000051: feature:9394607-9394806:1:region
SIO_000974: 01db4955-34f3-4087-84ab-dc919fee8db8

position:9394607:1
position: 9394607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394806:1
position: 9394806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01db4955-34f3-4087-84ab-dc919fee8db8
SIO_000300: 1
SIO_000628: feature:9394607-9394806:1:region

Laothoe populi genome assembly, chromosome: 22.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 22.
sequence version: HG992169.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16544612
topology: linear
RO_0000086: SO_0000987
location: 1..16544612
location: region:1-16544612:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16544612:1
position: 16544612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16544612:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11603676..11603875
location: region:11603676-11603875:1
BFO_0000051: feature:11603676-11603875:1:region
SIO_000974: a5ceb2f7-233a-4a82-9aa2-adfba89b81bc

position:11603676:1
position: 11603676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11603875:1
position: 11603875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5ceb2f7-233a-4a82-9aa2-adfba89b81bc
SIO_000300: 1
SIO_000628: feature:11603676-11603875:1:region

Laothoe populi genome assembly, chromosome: 23.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 23.
sequence version: HG992170.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15014564
topology: linear
RO_0000086: SO_0000987
location: 1..15014564
location: region:1-15014564:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15014564:1
position: 15014564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15014564:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1965928..1966427
location: region:1965928-1966427:1
BFO_0000051: feature:1965928-1966427:1:region
SIO_000974: a900a883-b5a1-472f-9a1c-9a7713a1ede1

position:1965928:1
position: 1965928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1966427:1
position: 1966427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a900a883-b5a1-472f-9a1c-9a7713a1ede1
SIO_000300: 1
SIO_000628: feature:1965928-1966427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2900942..2901441
location: region:2900942-2901441:1
BFO_0000051: feature:2900942-2901441:1:region
SIO_000974: cf28106c-4bee-431e-a233-63051fbbddcb

position:2900942:1
position: 2900942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2901441:1
position: 2901441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf28106c-4bee-431e-a233-63051fbbddcb
SIO_000300: 1
SIO_000628: feature:2900942-2901441:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4138116..4138615
location: region:4138116-4138615:1
BFO_0000051: feature:4138116-4138615:1:region
SIO_000974: 0783bff0-54f2-46ae-a5b7-1e75aa96b2d3

position:4138116:1
position: 4138116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4138615:1
position: 4138615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4138116-4138615:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5268875..5269374
location: region:5268875-5269374:1
BFO_0000051: feature:5268875-5269374:1:region
SIO_000974: 858c7208-527e-4844-be41-198250e713ab

position:5268875:1
position: 5268875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5269374:1
position: 5269374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

858c7208-527e-4844-be41-198250e713ab
SIO_000300: 1
SIO_000628: feature:5268875-5269374:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5558083..5558282
location: region:5558083-5558282:1
BFO_0000051: feature:5558083-5558282:1:region
SIO_000974: 62402ea3-7618-4097-977a-eace57bab25b

position:5558083:1
position: 5558083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5558282:1
position: 5558282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

62402ea3-7618-4097-977a-eace57bab25b
SIO_000300: 1
SIO_000628: feature:5558083-5558282:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5835910..5836109
location: region:5835910-5836109:1
BFO_0000051: feature:5835910-5836109:1:region
SIO_000974: f597a976-f831-4d14-82b9-be3218d51eaa

position:5835910:1
position: 5835910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5836109:1
position: 5836109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f597a976-f831-4d14-82b9-be3218d51eaa
SIO_000300: 1
SIO_000628: feature:5835910-5836109:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6703686..6703885
location: region:6703686-6703885:1
BFO_0000051: feature:6703686-6703885:1:region
SIO_000974: 7be8ef73-d6bc-4623-bdf9-c1b72af85ca5

position:6703686:1
position: 6703686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6703885:1
position: 6703885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7be8ef73-d6bc-4623-bdf9-c1b72af85ca5
SIO_000300: 1
SIO_000628: feature:6703686-6703885:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11204604..11204803
location: region:11204604-11204803:1
BFO_0000051: feature:11204604-11204803:1:region
SIO_000974: 2ab5bf3c-17f6-46e1-8782-ef48731fe6a3

position:11204604:1
position: 11204604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11204803:1
position: 11204803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2ab5bf3c-17f6-46e1-8782-ef48731fe6a3
SIO_000300: 1
SIO_000628: feature:11204604-11204803:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12207765..12207964
location: region:12207765-12207964:1
BFO_0000051: feature:12207765-12207964:1:region
SIO_000974: ff1cc716-8ae1-483c-a186-04641c22aafa

position:12207765:1
position: 12207765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12207964:1
position: 12207964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff1cc716-8ae1-483c-a186-04641c22aafa
SIO_000300: 1
SIO_000628: feature:12207765-12207964:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 13049263..13049762
location: region:13049263-13049762:1
BFO_0000051: feature:13049263-13049762:1:region
SIO_000974: 394e513c-0ad1-4218-9b9d-10fa41152ebb

position:13049263:1
position: 13049263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13049762:1
position: 13049762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

394e513c-0ad1-4218-9b9d-10fa41152ebb
SIO_000300: 1
SIO_000628: feature:13049263-13049762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13601173..13601372
location: region:13601173-13601372:1
BFO_0000051: feature:13601173-13601372:1:region
SIO_000974: cbae591a-91b5-4b6c-bde5-5c1a00267e20

position:13601173:1
position: 13601173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13601372:1
position: 13601372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cbae591a-91b5-4b6c-bde5-5c1a00267e20
SIO_000300: 1
SIO_000628: feature:13601173-13601372:1:region

Laothoe populi genome assembly, chromosome: 24.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 24.
sequence version: HG992171.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14828359
topology: linear
RO_0000086: SO_0000987
location: 1..14828359
location: region:1-14828359:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14828359:1
position: 14828359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14828359:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7768418..7768617
location: region:7768418-7768617:1
BFO_0000051: feature:7768418-7768617:1:region
SIO_000974: 7d1dabb5-17ba-4674-9682-446bf97ca696

position:7768418:1
position: 7768418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7768617:1
position: 7768617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d1dabb5-17ba-4674-9682-446bf97ca696
SIO_000300: 1
SIO_000628: feature:7768418-7768617:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8019840..8020039
location: region:8019840-8020039:1
BFO_0000051: feature:8019840-8020039:1:region
SIO_000974: bd849fcb-33d4-4f52-aff3-111d8608a6a7

position:8019840:1
position: 8019840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8020039:1
position: 8020039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd849fcb-33d4-4f52-aff3-111d8608a6a7
SIO_000300: 1
SIO_000628: feature:8019840-8020039:1:region

Laothoe populi genome assembly, chromosome: 25.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 25.
sequence version: HG992172.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13538803
topology: linear
RO_0000086: SO_0000987
location: 1..13538803
location: region:1-13538803:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13538803:1
position: 13538803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13538803:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5359781..5359980
location: region:5359781-5359980:1
BFO_0000051: feature:5359781-5359980:1:region
SIO_000974: ec155607-b11b-49ec-9a09-9b8b4685e4dd

position:5359781:1
position: 5359781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5359980:1
position: 5359980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec155607-b11b-49ec-9a09-9b8b4685e4dd
SIO_000300: 1
SIO_000628: feature:5359781-5359980:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11279890..11280089
location: region:11279890-11280089:1
BFO_0000051: feature:11279890-11280089:1:region
SIO_000974: ab4ff373-a35f-4d6f-a22f-45b9a429819d

position:11279890:1
position: 11279890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11280089:1
position: 11280089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab4ff373-a35f-4d6f-a22f-45b9a429819d
SIO_000300: 1
SIO_000628: feature:11279890-11280089:1:region

Laothoe populi genome assembly, chromosome: 26.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 26.
sequence version: HG992173.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12627004
topology: linear
RO_0000086: SO_0000987
location: 1..12627004
location: region:1-12627004:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12627004:1
position: 12627004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12627004:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8421326..8421525
location: region:8421326-8421525:1
BFO_0000051: feature:8421326-8421525:1:region
SIO_000974: c44b8299-a3e2-44e0-8e36-95e29b62fec3

position:8421326:1
position: 8421326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8421525:1
position: 8421525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c44b8299-a3e2-44e0-8e36-95e29b62fec3
SIO_000300: 1
SIO_000628: feature:8421326-8421525:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8453191..8453390
location: region:8453191-8453390:1
BFO_0000051: feature:8453191-8453390:1:region
SIO_000974: b7453e4b-5541-4499-8b8e-61f89a094204

position:8453191:1
position: 8453191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8453390:1
position: 8453390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7453e4b-5541-4499-8b8e-61f89a094204
SIO_000300: 1
SIO_000628: feature:8453191-8453390:1:region

Laothoe populi genome assembly, chromosome: 27.
type: Entry
definition: Laothoe populi genome assembly, chromosome: 27.
sequence version: HG992174.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10590358
topology: linear
RO_0000086: SO_0000987
location: 1..10590358
location: region:1-10590358:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10590358:1
position: 10590358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10590358:1:source
BFO_0000050: sequence
organism: Laothoe populi
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 522836
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6878813..6879012
location: region:6878813-6879012:1
BFO_0000051: feature:6878813-6879012:1:region
SIO_000974: bef7f606-69dc-4624-a3d5-f90c5ce51e57

position:6878813:1
position: 6878813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6879012:1
position: 6879012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bef7f606-69dc-4624-a3d5-f90c5ce51e57
SIO_000300: 1
SIO_000628: feature:6878813-6879012:1:region

Laothoe populi genome assembly, organelle: mitochondrion.
type: Entry
definition: Laothoe populi genome assembly, organelle: mitochondrion.
sequence version: HG992175.1
sequence date: 2021-02-14
sequence: sequence
division: INV
source: mitochondrion Laothoe populi
organism: Laothoe populi
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe.
reference: 1
comment: The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15277
topology: linear
RO_0000086: SO_0000987
location: 1..15277
location: region:1-15277:1
RO_0002162: 522836

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15277:1
position: 15277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15277:1:source
BFO_0000050: sequence
organism: Laothoe populi
organelle: mitochondrion
mol type: genomic DNA

Mellicta athalia genome assembly, chromosome: Z.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: Z.
sequence version: HG992176.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26233870
topology: linear
RO_0000086: SO_0000987
location: 1..26233870
location: region:1-26233870:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26233870:1
position: 26233870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26233870:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: Z
mol type: genomic DNA

113330
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6668901..6669100
location: region:6668901-6669100:1
BFO_0000051: feature:6668901-6669100:1:region
SIO_000974: 36805bd2-32f9-40e7-a318-abf855d9927f

position:6668901:1
position: 6668901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6669100:1
position: 6669100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36805bd2-32f9-40e7-a318-abf855d9927f
SIO_000300: 1
SIO_000628: feature:6668901-6669100:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8621655..8621854
location: region:8621655-8621854:1
BFO_0000051: feature:8621655-8621854:1:region
SIO_000974: fccd9aaa-febb-4d83-a7bb-75e7ad86dae1

position:8621655:1
position: 8621655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8621854:1
position: 8621854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fccd9aaa-febb-4d83-a7bb-75e7ad86dae1
SIO_000300: 1
SIO_000628: feature:8621655-8621854:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13746025..13746224
location: region:13746025-13746224:1
BFO_0000051: feature:13746025-13746224:1:region
SIO_000974: c0a06da1-f8bd-4de8-a8eb-efc15900bbde

position:13746025:1
position: 13746025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13746224:1
position: 13746224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0a06da1-f8bd-4de8-a8eb-efc15900bbde
SIO_000300: 1
SIO_000628: feature:13746025-13746224:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14763893..14764092
location: region:14763893-14764092:1
BFO_0000051: feature:14763893-14764092:1:region
SIO_000974: b5eb1d5a-aecd-4393-aac4-94b66418a506

position:14763893:1
position: 14763893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14764092:1
position: 14764092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b5eb1d5a-aecd-4393-aac4-94b66418a506
SIO_000300: 1
SIO_000628: feature:14763893-14764092:1:region

Mellicta athalia genome assembly, chromosome: 1.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 1.
sequence version: HG992177.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 25133022
topology: linear
RO_0000086: SO_0000987
location: 1..25133022
location: region:1-25133022:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25133022:1
position: 25133022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25133022:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 13299626..13300125
location: region:13299626-13300125:1
BFO_0000051: feature:13299626-13300125:1:region
SIO_000974: 1889ab7f-8e2a-4aeb-8fef-c22409eb4984

position:13299626:1
position: 13299626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13300125:1
position: 13300125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1889ab7f-8e2a-4aeb-8fef-c22409eb4984
SIO_000300: 1
SIO_000628: feature:13299626-13300125:1:region

Mellicta athalia genome assembly, chromosome: 2.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 2.
sequence version: HG992178.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24877037
topology: linear
RO_0000086: SO_0000987
location: 1..24877037
location: region:1-24877037:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24877037:1
position: 24877037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24877037:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 569222..569421
location: region:569222-569421:1
BFO_0000051: feature:569222-569421:1:region
SIO_000974: 4a581ec0-ed10-422b-9094-e6eaa7a369b2

position:569222:1
position: 569222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:569421:1
position: 569421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4a581ec0-ed10-422b-9094-e6eaa7a369b2
SIO_000300: 1
SIO_000628: feature:569222-569421:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5495335..5495834
location: region:5495335-5495834:1
BFO_0000051: feature:5495335-5495834:1:region
SIO_000974: bfc27dfc-b701-418f-95b9-688b01234ad3

position:5495335:1
position: 5495335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5495834:1
position: 5495834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bfc27dfc-b701-418f-95b9-688b01234ad3
SIO_000300: 1
SIO_000628: feature:5495335-5495834:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 23835280..23835779
location: region:23835280-23835779:1
BFO_0000051: feature:23835280-23835779:1:region
SIO_000974: c55af8e6-31ad-43bd-936d-f4bbc6272cbc

position:23835280:1
position: 23835280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23835779:1
position: 23835779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c55af8e6-31ad-43bd-936d-f4bbc6272cbc
SIO_000300: 1
SIO_000628: feature:23835280-23835779:1:region

Mellicta athalia genome assembly, chromosome: 3.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 3.
sequence version: HG992179.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23648884
topology: linear
RO_0000086: SO_0000987
location: 1..23648884
location: region:1-23648884:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23648884:1
position: 23648884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23648884:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1940760..1941259
location: region:1940760-1941259:1
BFO_0000051: feature:1940760-1941259:1:region
SIO_000974: 2671de90-c509-4e28-a9f7-c569676d60d4

position:1940760:1
position: 1940760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1941259:1
position: 1941259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2671de90-c509-4e28-a9f7-c569676d60d4
SIO_000300: 1
SIO_000628: feature:1940760-1941259:1:region

Mellicta athalia genome assembly, chromosome: 4.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 4.
sequence version: HG992180.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22925277
topology: linear
RO_0000086: SO_0000987
location: 1..22925277
location: region:1-22925277:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22925277:1
position: 22925277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22925277:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 69103..69302
location: region:69103-69302:1
BFO_0000051: feature:69103-69302:1:region
SIO_000974: 9d245f69-0a5a-4f30-8207-6c11b2def8af

position:69103:1
position: 69103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69302:1
position: 69302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d245f69-0a5a-4f30-8207-6c11b2def8af
SIO_000300: 1
SIO_000628: feature:69103-69302:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1766055..1766554
location: region:1766055-1766554:1
BFO_0000051: feature:1766055-1766554:1:region
SIO_000974: 0dbe206d-bdb9-4295-8f15-2c7fbf5ae3c4

position:1766055:1
position: 1766055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1766554:1
position: 1766554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0dbe206d-bdb9-4295-8f15-2c7fbf5ae3c4
SIO_000300: 1
SIO_000628: feature:1766055-1766554:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4607030..4607529
location: region:4607030-4607529:1
BFO_0000051: feature:4607030-4607529:1:region
SIO_000974: 38705664-1fc7-4d7c-8d1e-f7e698fe2607

position:4607030:1
position: 4607030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4607529:1
position: 4607529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38705664-1fc7-4d7c-8d1e-f7e698fe2607
SIO_000300: 1
SIO_000628: feature:4607030-4607529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11896508..11897007
location: region:11896508-11897007:1
BFO_0000051: feature:11896508-11897007:1:region
SIO_000974: 36cd2f24-1802-44d5-b1c8-6ef57111e521

position:11896508:1
position: 11896508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11897007:1
position: 11897007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36cd2f24-1802-44d5-b1c8-6ef57111e521
SIO_000300: 1
SIO_000628: feature:11896508-11897007:1:region

Mellicta athalia genome assembly, chromosome: 5.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 5.
sequence version: HG992181.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22895925
topology: linear
RO_0000086: SO_0000987
location: 1..22895925
location: region:1-22895925:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22895925:1
position: 22895925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22895925:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3048427..3048926
location: region:3048427-3048926:1
BFO_0000051: feature:3048427-3048926:1:region
SIO_000974: 1df2003b-a283-4ca9-a686-af69e3a4d97e

position:3048427:1
position: 3048427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3048926:1
position: 3048926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1df2003b-a283-4ca9-a686-af69e3a4d97e
SIO_000300: 1
SIO_000628: feature:3048427-3048926:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 21378204..21378703
location: region:21378204-21378703:1
BFO_0000051: feature:21378204-21378703:1:region
SIO_000974: 9b0b50ce-2682-4a04-af13-1c2f35650145

position:21378204:1
position: 21378204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21378703:1
position: 21378703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b0b50ce-2682-4a04-af13-1c2f35650145
SIO_000300: 1
SIO_000628: feature:21378204-21378703:1:region

Mellicta athalia genome assembly, chromosome: 6.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 6.
sequence version: HG992182.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22794856
topology: linear
RO_0000086: SO_0000987
location: 1..22794856
location: region:1-22794856:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22794856:1
position: 22794856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22794856:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 17282401..17282900
location: region:17282401-17282900:1
BFO_0000051: feature:17282401-17282900:1:region
SIO_000974: 92bb1f37-6f75-47f1-8064-b7fa7e620bf9

position:17282401:1
position: 17282401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17282900:1
position: 17282900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92bb1f37-6f75-47f1-8064-b7fa7e620bf9
SIO_000300: 1
SIO_000628: feature:17282401-17282900:1:region

Mellicta athalia genome assembly, chromosome: 7.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 7.
sequence version: HG992183.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21872383
topology: linear
RO_0000086: SO_0000987
location: 1..21872383
location: region:1-21872383:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21872383:1
position: 21872383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21872383:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1288149..1288648
location: region:1288149-1288648:1
BFO_0000051: feature:1288149-1288648:1:region
SIO_000974: 38013b1c-0c82-4295-80bd-2382d2ce6fb9

position:1288149:1
position: 1288149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288648:1
position: 1288648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38013b1c-0c82-4295-80bd-2382d2ce6fb9
SIO_000300: 1
SIO_000628: feature:1288149-1288648:1:region

Mellicta athalia genome assembly, chromosome: 8.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 8.
sequence version: HG992184.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21419982
topology: linear
RO_0000086: SO_0000987
location: 1..21419982
location: region:1-21419982:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21419982:1
position: 21419982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21419982:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10004353..10004852
location: region:10004353-10004852:1
BFO_0000051: feature:10004353-10004852:1:region
SIO_000974: 94a1ad8b-328b-4fa9-b2f0-98d553fc6adf

position:10004353:1
position: 10004353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10004852:1
position: 10004852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94a1ad8b-328b-4fa9-b2f0-98d553fc6adf
SIO_000300: 1
SIO_000628: feature:10004353-10004852:1:region

Mellicta athalia genome assembly, chromosome: 9.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 9.
sequence version: HG992185.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21389510
topology: linear
RO_0000086: SO_0000987
location: 1..21389510
location: region:1-21389510:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21389510:1
position: 21389510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21389510:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 8652335..8652434
location: region:8652335-8652434:1
BFO_0000051: feature:8652335-8652434:1:region
SIO_000974: c7715787-4493-43f2-b403-d01453d2507e

position:8652335:1
position: 8652335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8652434:1
position: 8652434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7715787-4493-43f2-b403-d01453d2507e
SIO_000300: 1
SIO_000628: feature:8652335-8652434:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10077995..10078194
location: region:10077995-10078194:1
BFO_0000051: feature:10077995-10078194:1:region
SIO_000974: 2c04e1c8-6c79-4ccd-a752-85d6226f91a7

position:10077995:1
position: 10077995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10078194:1
position: 10078194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c04e1c8-6c79-4ccd-a752-85d6226f91a7
SIO_000300: 1
SIO_000628: feature:10077995-10078194:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 12194424..12194523
location: region:12194424-12194523:1
BFO_0000051: feature:12194424-12194523:1:region
SIO_000974: c39bbda0-a0b8-4352-af0f-47601138c992

position:12194424:1
position: 12194424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12194523:1
position: 12194523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c39bbda0-a0b8-4352-af0f-47601138c992
SIO_000300: 1
SIO_000628: feature:12194424-12194523:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15657726..15657925
location: region:15657726-15657925:1
BFO_0000051: feature:15657726-15657925:1:region
SIO_000974: 85170f7f-713a-4d84-9d0b-5d2623fa789b

position:15657726:1
position: 15657726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15657925:1
position: 15657925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

85170f7f-713a-4d84-9d0b-5d2623fa789b
SIO_000300: 1
SIO_000628: feature:15657726-15657925:1:region

Mellicta athalia genome assembly, chromosome: 10.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 10.
sequence version: HG992186.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21375889
topology: linear
RO_0000086: SO_0000987
location: 1..21375889
location: region:1-21375889:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21375889:1
position: 21375889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21375889:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2838206..2838405
location: region:2838206-2838405:1
BFO_0000051: feature:2838206-2838405:1:region
SIO_000974: 1ee4c64a-370d-4339-809e-a58b63851dd7

position:2838206:1
position: 2838206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2838405:1
position: 2838405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ee4c64a-370d-4339-809e-a58b63851dd7
SIO_000300: 1
SIO_000628: feature:2838206-2838405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3064581..3064780
location: region:3064581-3064780:1
BFO_0000051: feature:3064581-3064780:1:region
SIO_000974: c7a988ee-e7f9-4f99-9bed-19e23378627b

position:3064581:1
position: 3064581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3064780:1
position: 3064780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7a988ee-e7f9-4f99-9bed-19e23378627b
SIO_000300: 1
SIO_000628: feature:3064581-3064780:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3100481..3100680
location: region:3100481-3100680:1
BFO_0000051: feature:3100481-3100680:1:region
SIO_000974: b8c0abde-eb38-47f0-a80d-3621fab34664

position:3100481:1
position: 3100481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3100680:1
position: 3100680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8c0abde-eb38-47f0-a80d-3621fab34664
SIO_000300: 1
SIO_000628: feature:3100481-3100680:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12908751..12908950
location: region:12908751-12908950:1
BFO_0000051: feature:12908751-12908950:1:region
SIO_000974: d4cba84a-f85c-4cc5-aeee-d6a7c79fe77e

position:12908751:1
position: 12908751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12908950:1
position: 12908950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d4cba84a-f85c-4cc5-aeee-d6a7c79fe77e
SIO_000300: 1
SIO_000628: feature:12908751-12908950:1:region

Mellicta athalia genome assembly, chromosome: 11.
type: Entry
definition: Mellicta athalia genome assembly, chromosome: 11.
sequence version: HG992187.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Mellicta athalia
organism: Mellicta athalia
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae.
reference: 1
reference: 2
comment: The assembly ilMelAtha1.2 is based on 30x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21234190
topology: linear
RO_0000086: SO_0000987
location: 1..21234190
location: region:1-21234190:1
RO_0002162: 113330

1
journal: Submitted (03-FEB-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21234190:1
position: 21234190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21234190:1:source
BFO_0000050: sequence
organism: Mellicta athalia
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 1027289..1027388
location: region:1027289-1027388:1
BFO_0000051: feature:1027289-1027388:1:region
SIO_000974: 5b1f9ed5-5b26-47e4-b3cf-9134e5aa1863

position:1027289:1
position: 1027289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027388:1
position: 1027388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b1f9ed5-5b26-47e4-b3cf-9134e5aa1863
SIO_000300: 1
SIO_000628: feature:1027289-1027388:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 113330
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7445335..7445834
location: region:7445335-7445834:1
BFO_0000051: feature:7445335-7445834:1:region
SIO_000974: 9bda1fc8-41d6-4389-bec3-881822febd5b

position:7445335:1
position: 7445335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7445834:1
position: 7445834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9bda1fc8-41d6-4389-bec3-881822febd5b
SIO_000300: 1
SIO_000628: feature:7445335-7445834:1:region