Esperia sulphurella genome assembly, chromosome: 4.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 4.
sequence version: OX352261.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18821443
topology: linear
RO_0000086: SO_0000987
location: 1..18821443
location: region:1-18821443:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18821443:1
position: 18821443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18821443:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 4
mol type: genomic DNA

2870497
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9535355..9535554
location: region:9535355-9535554:1
BFO_0000051: feature:9535355-9535554:1:region
SIO_000974: 874e8eb2-2c0a-4001-bd1b-2970035bd677

position:9535355:1
position: 9535355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9535554:1
position: 9535554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

874e8eb2-2c0a-4001-bd1b-2970035bd677
SIO_000300: 1
SIO_000628: feature:9535355-9535554:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10774391..10774590
location: region:10774391-10774590:1
BFO_0000051: feature:10774391-10774590:1:region
SIO_000974: f8dee419-ab51-4f20-9b83-7ea940d2e457

position:10774391:1
position: 10774391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10774590:1
position: 10774590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f8dee419-ab51-4f20-9b83-7ea940d2e457
SIO_000300: 1
SIO_000628: feature:10774391-10774590:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16324496..16324695
location: region:16324496-16324695:1
BFO_0000051: feature:16324496-16324695:1:region
SIO_000974: dff260ba-8b44-4054-b00e-71c77e22e757

position:16324496:1
position: 16324496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16324695:1
position: 16324695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dff260ba-8b44-4054-b00e-71c77e22e757
SIO_000300: 1
SIO_000628: feature:16324496-16324695:1:region

Esperia sulphurella genome assembly, chromosome: 5.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 5.
sequence version: OX352262.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18370405
topology: linear
RO_0000086: SO_0000987
location: 1..18370405
location: region:1-18370405:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18370405:1
position: 18370405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18370405:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 341266..341465
location: region:341266-341465:1
BFO_0000051: feature:341266-341465:1:region
SIO_000974: 3a588150-8d41-4eea-8b2f-4d9211685240

position:341266:1
position: 341266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341465:1
position: 341465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a588150-8d41-4eea-8b2f-4d9211685240
SIO_000300: 1
SIO_000628: feature:341266-341465:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1489466..1489665
location: region:1489466-1489665:1
BFO_0000051: feature:1489466-1489665:1:region
SIO_000974: cabf76ac-4e9a-4650-8286-fe74a7961cf1

position:1489466:1
position: 1489466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1489665:1
position: 1489665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cabf76ac-4e9a-4650-8286-fe74a7961cf1
SIO_000300: 1
SIO_000628: feature:1489466-1489665:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1889301..1889500
location: region:1889301-1889500:1
BFO_0000051: feature:1889301-1889500:1:region
SIO_000974: 1e2d5864-1d54-45d7-9259-a0d290ead417

position:1889301:1
position: 1889301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1889500:1
position: 1889500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1e2d5864-1d54-45d7-9259-a0d290ead417
SIO_000300: 1
SIO_000628: feature:1889301-1889500:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3820855..3821054
location: region:3820855-3821054:1
BFO_0000051: feature:3820855-3821054:1:region
SIO_000974: 891809fb-865d-4885-be51-1289af0e297d

position:3820855:1
position: 3820855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3821054:1
position: 3821054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

891809fb-865d-4885-be51-1289af0e297d
SIO_000300: 1
SIO_000628: feature:3820855-3821054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11128055..11128254
location: region:11128055-11128254:1
BFO_0000051: feature:11128055-11128254:1:region
SIO_000974: 4f032dd5-5227-430b-9f7a-6fc9f0ee72f0

position:11128055:1
position: 11128055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11128254:1
position: 11128254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f032dd5-5227-430b-9f7a-6fc9f0ee72f0
SIO_000300: 1
SIO_000628: feature:11128055-11128254:1:region

Esperia sulphurella genome assembly, chromosome: 6.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 6.
sequence version: OX352263.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18318964
topology: linear
RO_0000086: SO_0000987
location: 1..18318964
location: region:1-18318964:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18318964:1
position: 18318964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18318964:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7188052..7188251
location: region:7188052-7188251:1
BFO_0000051: feature:7188052-7188251:1:region
SIO_000974: 4647cbd8-8259-4cc3-96d4-16b6b0607338

position:7188052:1
position: 7188052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7188251:1
position: 7188251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4647cbd8-8259-4cc3-96d4-16b6b0607338
SIO_000300: 1
SIO_000628: feature:7188052-7188251:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12256143..12256342
location: region:12256143-12256342:1
BFO_0000051: feature:12256143-12256342:1:region
SIO_000974: 75218150-4102-46df-b143-7c66fcdbf734

position:12256143:1
position: 12256143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12256342:1
position: 12256342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

75218150-4102-46df-b143-7c66fcdbf734
SIO_000300: 1
SIO_000628: feature:12256143-12256342:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15887558..15887757
location: region:15887558-15887757:1
BFO_0000051: feature:15887558-15887757:1:region
SIO_000974: 8d99e2c0-1b86-4649-b81d-a03b25d02088

position:15887558:1
position: 15887558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15887757:1
position: 15887757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d99e2c0-1b86-4649-b81d-a03b25d02088
SIO_000300: 1
SIO_000628: feature:15887558-15887757:1:region

Esperia sulphurella genome assembly, chromosome: 7.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 7.
sequence version: OX352264.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18221643
topology: linear
RO_0000086: SO_0000987
location: 1..18221643
location: region:1-18221643:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18221643:1
position: 18221643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18221643:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1053132..1053331
location: region:1053132-1053331:1
BFO_0000051: feature:1053132-1053331:1:region
SIO_000974: c6ba4857-86be-4461-b527-21a7a226dba7

position:1053132:1
position: 1053132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1053331:1
position: 1053331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c6ba4857-86be-4461-b527-21a7a226dba7
SIO_000300: 1
SIO_000628: feature:1053132-1053331:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8572735..8572934
location: region:8572735-8572934:1
BFO_0000051: feature:8572735-8572934:1:region
SIO_000974: 45c525b0-df7a-4e53-82b7-7d7970376c25

position:8572735:1
position: 8572735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8572934:1
position: 8572934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45c525b0-df7a-4e53-82b7-7d7970376c25
SIO_000300: 1
SIO_000628: feature:8572735-8572934:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8738625..8738824
location: region:8738625-8738824:1
BFO_0000051: feature:8738625-8738824:1:region
SIO_000974: 095b336c-d55f-44b0-abc3-0cb93583f5a0

position:8738625:1
position: 8738625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8738824:1
position: 8738824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

095b336c-d55f-44b0-abc3-0cb93583f5a0
SIO_000300: 1
SIO_000628: feature:8738625-8738824:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11525312..11525511
location: region:11525312-11525511:1
BFO_0000051: feature:11525312-11525511:1:region
SIO_000974: d18bd32f-5a73-4bba-907c-2151f5443115

position:11525312:1
position: 11525312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11525511:1
position: 11525511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d18bd32f-5a73-4bba-907c-2151f5443115
SIO_000300: 1
SIO_000628: feature:11525312-11525511:1:region

Esperia sulphurella genome assembly, chromosome: 8.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 8.
sequence version: OX352265.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17124016
topology: linear
RO_0000086: SO_0000987
location: 1..17124016
location: region:1-17124016:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17124016:1
position: 17124016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17124016:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11704411..11704610
location: region:11704411-11704610:1
BFO_0000051: feature:11704411-11704610:1:region
SIO_000974: a240b303-7a08-42e2-b8e0-9849bfb9cb15

position:11704411:1
position: 11704411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11704610:1
position: 11704610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a240b303-7a08-42e2-b8e0-9849bfb9cb15
SIO_000300: 1
SIO_000628: feature:11704411-11704610:1:region

Esperia sulphurella genome assembly, chromosome: 9.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 9.
sequence version: OX352266.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17073545
topology: linear
RO_0000086: SO_0000987
location: 1..17073545
location: region:1-17073545:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17073545:1
position: 17073545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17073545:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 389319..389518
location: region:389319-389518:1
BFO_0000051: feature:389319-389518:1:region
SIO_000974: 81403f67-dbaf-4a88-9db6-0cb2cc67cd51

position:389319:1
position: 389319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389518:1
position: 389518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

81403f67-dbaf-4a88-9db6-0cb2cc67cd51
SIO_000300: 1
SIO_000628: feature:389319-389518:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1344524..1344723
location: region:1344524-1344723:1
BFO_0000051: feature:1344524-1344723:1:region
SIO_000974: bd970480-57c0-420a-be8f-0df77bc01181

position:1344524:1
position: 1344524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1344723:1
position: 1344723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd970480-57c0-420a-be8f-0df77bc01181
SIO_000300: 1
SIO_000628: feature:1344524-1344723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5913346..5913545
location: region:5913346-5913545:1
BFO_0000051: feature:5913346-5913545:1:region
SIO_000974: aebbf44d-f7e8-4630-bbb5-daced54dcfe4

position:5913346:1
position: 5913346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5913545:1
position: 5913545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aebbf44d-f7e8-4630-bbb5-daced54dcfe4
SIO_000300: 1
SIO_000628: feature:5913346-5913545:1:region

Esperia sulphurella genome assembly, chromosome: 10.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 10.
sequence version: OX352267.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16722533
topology: linear
RO_0000086: SO_0000987
location: 1..16722533
location: region:1-16722533:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16722533:1
position: 16722533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16722533:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13932727..13932926
location: region:13932727-13932926:1
BFO_0000051: feature:13932727-13932926:1:region
SIO_000974: 4e2d289d-7eb8-4614-973a-81b7b4e4740a

position:13932727:1
position: 13932727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13932926:1
position: 13932926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e2d289d-7eb8-4614-973a-81b7b4e4740a
SIO_000300: 1
SIO_000628: feature:13932727-13932926:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15213235..15213434
location: region:15213235-15213434:1
BFO_0000051: feature:15213235-15213434:1:region
SIO_000974: 9cad0ecd-7b0f-40b6-93d0-affd883e5c91

position:15213235:1
position: 15213235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15213434:1
position: 15213434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9cad0ecd-7b0f-40b6-93d0-affd883e5c91
SIO_000300: 1
SIO_000628: feature:15213235-15213434:1:region

Esperia sulphurella genome assembly, chromosome: 11.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 11.
sequence version: OX352268.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16379052
topology: linear
RO_0000086: SO_0000987
location: 1..16379052
location: region:1-16379052:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16379052:1
position: 16379052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16379052:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10286333..10286532
location: region:10286333-10286532:1
BFO_0000051: feature:10286333-10286532:1:region
SIO_000974: 7f88003c-012c-4ea2-b4a0-cb1d3ca45d98

position:10286333:1
position: 10286333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10286532:1
position: 10286532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f88003c-012c-4ea2-b4a0-cb1d3ca45d98
SIO_000300: 1
SIO_000628: feature:10286333-10286532:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13677093..13677292
location: region:13677093-13677292:1
BFO_0000051: feature:13677093-13677292:1:region
SIO_000974: c7e821e2-93ae-4e19-8314-093177f42f77

position:13677093:1
position: 13677093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13677292:1
position: 13677292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7e821e2-93ae-4e19-8314-093177f42f77
SIO_000300: 1
SIO_000628: feature:13677093-13677292:1:region

Esperia sulphurella genome assembly, chromosome: 12.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 12.
sequence version: OX352269.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16376554
topology: linear
RO_0000086: SO_0000987
location: 1..16376554
location: region:1-16376554:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16376554:1
position: 16376554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16376554:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10070650..10070849
location: region:10070650-10070849:1
BFO_0000051: feature:10070650-10070849:1:region
SIO_000974: 33f91903-d4bb-41da-8571-95186fdae357

position:10070650:1
position: 10070650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10070849:1
position: 10070849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

33f91903-d4bb-41da-8571-95186fdae357
SIO_000300: 1
SIO_000628: feature:10070650-10070849:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10403355..10403554
location: region:10403355-10403554:1
BFO_0000051: feature:10403355-10403554:1:region
SIO_000974: a7c20798-1bbe-484a-a5a6-7f03b4868eb6

position:10403355:1
position: 10403355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10403554:1
position: 10403554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10403355-10403554:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11196149..11196348
location: region:11196149-11196348:1
BFO_0000051: feature:11196149-11196348:1:region
SIO_000974: 00f0f7de-49a0-42e4-9876-2a03c740fdce

position:11196149:1
position: 11196149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11196348:1
position: 11196348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00f0f7de-49a0-42e4-9876-2a03c740fdce
SIO_000300: 1
SIO_000628: feature:11196149-11196348:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12119351..12119550
location: region:12119351-12119550:1
BFO_0000051: feature:12119351-12119550:1:region
SIO_000974: 6a94a79a-408b-4446-91e3-b2b4af32b281

position:12119351:1
position: 12119351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12119550:1
position: 12119550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12119351-12119550:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16041821..16042020
location: region:16041821-16042020:1
BFO_0000051: feature:16041821-16042020:1:region
SIO_000974: 279580f4-25a9-4809-9c68-17d056f833ce

position:16041821:1
position: 16041821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16042020:1
position: 16042020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

279580f4-25a9-4809-9c68-17d056f833ce
SIO_000300: 1
SIO_000628: feature:16041821-16042020:1:region

Esperia sulphurella genome assembly, chromosome: 13.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 13.
sequence version: OX352270.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16064507
topology: linear
RO_0000086: SO_0000987
location: 1..16064507
location: region:1-16064507:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16064507:1
position: 16064507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16064507:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6569538..6569737
location: region:6569538-6569737:1
BFO_0000051: feature:6569538-6569737:1:region
SIO_000974: 6020f771-8880-4e76-a03b-5d35a686dc73

position:6569538:1
position: 6569538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6569737:1
position: 6569737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6020f771-8880-4e76-a03b-5d35a686dc73
SIO_000300: 1
SIO_000628: feature:6569538-6569737:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13221083..13221282
location: region:13221083-13221282:1
BFO_0000051: feature:13221083-13221282:1:region
SIO_000974: 0b0d45c6-7f2e-4364-b9ca-3390be1c4acc

position:13221083:1
position: 13221083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13221282:1
position: 13221282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0b0d45c6-7f2e-4364-b9ca-3390be1c4acc
SIO_000300: 1
SIO_000628: feature:13221083-13221282:1:region

Esperia sulphurella genome assembly, chromosome: 14.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 14.
sequence version: OX352271.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15914604
topology: linear
RO_0000086: SO_0000987
location: 1..15914604
location: region:1-15914604:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15914604:1
position: 15914604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15914604:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2124498..2124697
location: region:2124498-2124697:1
BFO_0000051: feature:2124498-2124697:1:region
SIO_000974: 16279ff9-27f1-4720-aefb-ca395b448adc

position:2124498:1
position: 2124498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2124697:1
position: 2124697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16279ff9-27f1-4720-aefb-ca395b448adc
SIO_000300: 1
SIO_000628: feature:2124498-2124697:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2947981..2948180
location: region:2947981-2948180:1
BFO_0000051: feature:2947981-2948180:1:region
SIO_000974: b8af689c-5401-4fe3-a30e-841abb62634d

position:2947981:1
position: 2947981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2948180:1
position: 2948180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8af689c-5401-4fe3-a30e-841abb62634d
SIO_000300: 1
SIO_000628: feature:2947981-2948180:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6886922..6887121
location: region:6886922-6887121:1
BFO_0000051: feature:6886922-6887121:1:region
SIO_000974: 75ed43c9-3ba9-450d-b6d0-7a6f229749e0

position:6886922:1
position: 6886922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6887121:1
position: 6887121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

75ed43c9-3ba9-450d-b6d0-7a6f229749e0
SIO_000300: 1
SIO_000628: feature:6886922-6887121:1:region

Esperia sulphurella genome assembly, chromosome: 15.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 15.
sequence version: OX352272.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15767163
topology: linear
RO_0000086: SO_0000987
location: 1..15767163
location: region:1-15767163:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15767163:1
position: 15767163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15767163:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4412847..4413046
location: region:4412847-4413046:1
BFO_0000051: feature:4412847-4413046:1:region
SIO_000974: 64493d8d-3e1c-4684-80f5-97bf3b651038

position:4412847:1
position: 4412847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4413046:1
position: 4413046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64493d8d-3e1c-4684-80f5-97bf3b651038
SIO_000300: 1
SIO_000628: feature:4412847-4413046:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12809764..12809963
location: region:12809764-12809963:1
BFO_0000051: feature:12809764-12809963:1:region
SIO_000974: 9ddb438b-ae5b-46ff-9ae7-e926733ae856

position:12809764:1
position: 12809764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12809963:1
position: 12809963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12809764-12809963:1:region

Esperia sulphurella genome assembly, chromosome: 16.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 16.
sequence version: OX352273.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15438083
topology: linear
RO_0000086: SO_0000987
location: 1..15438083
location: region:1-15438083:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15438083:1
position: 15438083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15438083:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6306088..6306287
location: region:6306088-6306287:1
BFO_0000051: feature:6306088-6306287:1:region
SIO_000974: 48548e99-1c2c-4e7b-8bd6-e8150bf50e4e

position:6306088:1
position: 6306088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6306287:1
position: 6306287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

48548e99-1c2c-4e7b-8bd6-e8150bf50e4e
SIO_000300: 1
SIO_000628: feature:6306088-6306287:1:region

Esperia sulphurella genome assembly, chromosome: 17.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 17.
sequence version: OX352274.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14966932
topology: linear
RO_0000086: SO_0000987
location: 1..14966932
location: region:1-14966932:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14966932:1
position: 14966932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14966932:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 17
mol type: genomic DNA

Esperia sulphurella genome assembly, chromosome: 18.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 18.
sequence version: OX352275.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14796620
topology: linear
RO_0000086: SO_0000987
location: 1..14796620
location: region:1-14796620:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14796620:1
position: 14796620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14796620:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12607452..12607651
location: region:12607452-12607651:1
BFO_0000051: feature:12607452-12607651:1:region
SIO_000974: a7b6aa0e-6fa2-4211-802e-1c9e7674f28d

position:12607452:1
position: 12607452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12607651:1
position: 12607651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a7b6aa0e-6fa2-4211-802e-1c9e7674f28d
SIO_000300: 1
SIO_000628: feature:12607452-12607651:1:region

Esperia sulphurella genome assembly, chromosome: 19.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 19.
sequence version: OX352276.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14784816
topology: linear
RO_0000086: SO_0000987
location: 1..14784816
location: region:1-14784816:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14784816:1
position: 14784816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14784816:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47918..48117
location: region:47918-48117:1
BFO_0000051: feature:47918-48117:1:region
SIO_000974: 56494450-8024-4765-a523-c7d97411120f

position:47918:1
position: 47918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48117:1
position: 48117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56494450-8024-4765-a523-c7d97411120f
SIO_000300: 1
SIO_000628: feature:47918-48117:1:region

Esperia sulphurella genome assembly, chromosome: 20.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 20.
sequence version: OX352277.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13826821
topology: linear
RO_0000086: SO_0000987
location: 1..13826821
location: region:1-13826821:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13826821:1
position: 13826821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13826821:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 940863..941062
location: region:940863-941062:1
BFO_0000051: feature:940863-941062:1:region
SIO_000974: c886d825-d244-4694-9301-861482fad34b

position:940863:1
position: 940863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:941062:1
position: 941062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c886d825-d244-4694-9301-861482fad34b
SIO_000300: 1
SIO_000628: feature:940863-941062:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1447728..1447927
location: region:1447728-1447927:1
BFO_0000051: feature:1447728-1447927:1:region
SIO_000974: e2b8814b-19c6-4bfa-8289-08753f7019d8

position:1447728:1
position: 1447728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1447927:1
position: 1447927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2b8814b-19c6-4bfa-8289-08753f7019d8
SIO_000300: 1
SIO_000628: feature:1447728-1447927:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1667070..1667269
location: region:1667070-1667269:1
BFO_0000051: feature:1667070-1667269:1:region
SIO_000974: 4b8457e3-31cd-4fda-940c-229c8f053083

position:1667070:1
position: 1667070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1667269:1
position: 1667269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b8457e3-31cd-4fda-940c-229c8f053083
SIO_000300: 1
SIO_000628: feature:1667070-1667269:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13473694..13473893
location: region:13473694-13473893:1
BFO_0000051: feature:13473694-13473893:1:region
SIO_000974: a74a6612-c3b1-4c8b-94c9-e350b75576cc

position:13473694:1
position: 13473694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13473893:1
position: 13473893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a74a6612-c3b1-4c8b-94c9-e350b75576cc
SIO_000300: 1
SIO_000628: feature:13473694-13473893:1:region

Esperia sulphurella genome assembly, chromosome: 21.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 21.
sequence version: OX352278.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12344128
topology: linear
RO_0000086: SO_0000987
location: 1..12344128
location: region:1-12344128:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12344128:1
position: 12344128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12344128:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4026023..4026222
location: region:4026023-4026222:1
BFO_0000051: feature:4026023-4026222:1:region
SIO_000974: 3f4b25cb-ace0-4f73-ab9c-5a577efa6f3f

position:4026023:1
position: 4026023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4026222:1
position: 4026222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3f4b25cb-ace0-4f73-ab9c-5a577efa6f3f
SIO_000300: 1
SIO_000628: feature:4026023-4026222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9552480..9552679
location: region:9552480-9552679:1
BFO_0000051: feature:9552480-9552679:1:region
SIO_000974: 3ba229cf-5f0b-4bec-8d2f-e71f410bf996

position:9552480:1
position: 9552480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9552679:1
position: 9552679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ba229cf-5f0b-4bec-8d2f-e71f410bf996
SIO_000300: 1
SIO_000628: feature:9552480-9552679:1:region

Esperia sulphurella genome assembly, chromosome: 22.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 22.
sequence version: OX352279.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11743333
topology: linear
RO_0000086: SO_0000987
location: 1..11743333
location: region:1-11743333:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11743333:1
position: 11743333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11743333:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4281566..4281765
location: region:4281566-4281765:1
BFO_0000051: feature:4281566-4281765:1:region
SIO_000974: eab32908-2815-483b-90fa-1da607710bd2

position:4281566:1
position: 4281566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4281765:1
position: 4281765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eab32908-2815-483b-90fa-1da607710bd2
SIO_000300: 1
SIO_000628: feature:4281566-4281765:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7259156..7259355
location: region:7259156-7259355:1
BFO_0000051: feature:7259156-7259355:1:region
SIO_000974: c432b005-5765-481e-b34b-d7e511771986

position:7259156:1
position: 7259156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7259355:1
position: 7259355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c432b005-5765-481e-b34b-d7e511771986
SIO_000300: 1
SIO_000628: feature:7259156-7259355:1:region

Esperia sulphurella genome assembly, chromosome: 23.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 23.
sequence version: OX352280.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11485091
topology: linear
RO_0000086: SO_0000987
location: 1..11485091
location: region:1-11485091:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11485091:1
position: 11485091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11485091:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2967323..2967522
location: region:2967323-2967522:1
BFO_0000051: feature:2967323-2967522:1:region
SIO_000974: 31ffb5c5-fa36-4db7-a7fe-a1a489fa5da1

position:2967323:1
position: 2967323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2967522:1
position: 2967522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31ffb5c5-fa36-4db7-a7fe-a1a489fa5da1
SIO_000300: 1
SIO_000628: feature:2967323-2967522:1:region

Esperia sulphurella genome assembly, chromosome: 24.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 24.
sequence version: OX352281.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10956773
topology: linear
RO_0000086: SO_0000987
location: 1..10956773
location: region:1-10956773:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10956773:1
position: 10956773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10956773:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 24
mol type: genomic DNA

Esperia sulphurella genome assembly, chromosome: 25.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 25.
sequence version: OX352282.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9706920
topology: linear
RO_0000086: SO_0000987
location: 1..9706920
location: region:1-9706920:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9706920:1
position: 9706920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9706920:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 627865..628064
location: region:627865-628064:1
BFO_0000051: feature:627865-628064:1:region
SIO_000974: 97e59055-39a9-4dc0-9f77-a370c2a8f3e5

position:627865:1
position: 627865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:628064:1
position: 628064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97e59055-39a9-4dc0-9f77-a370c2a8f3e5
SIO_000300: 1
SIO_000628: feature:627865-628064:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9627387..9627586
location: region:9627387-9627586:1
BFO_0000051: feature:9627387-9627586:1:region
SIO_000974: 5e6b3e55-122a-4c35-bc50-46b1191d7492

position:9627387:1
position: 9627387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9627586:1
position: 9627586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e6b3e55-122a-4c35-bc50-46b1191d7492
SIO_000300: 1
SIO_000628: feature:9627387-9627586:1:region

Esperia sulphurella genome assembly, chromosome: 26.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 26.
sequence version: OX352283.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8553935
topology: linear
RO_0000086: SO_0000987
location: 1..8553935
location: region:1-8553935:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8553935:1
position: 8553935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8553935:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 329493..329692
location: region:329493-329692:1
BFO_0000051: feature:329493-329692:1:region
SIO_000974: 6271ed0b-61b4-4896-ae7c-27d423e5a104

position:329493:1
position: 329493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329692:1
position: 329692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6271ed0b-61b4-4896-ae7c-27d423e5a104
SIO_000300: 1
SIO_000628: feature:329493-329692:1:region

Esperia sulphurella genome assembly, chromosome: 27.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 27.
sequence version: OX352284.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8550260
topology: linear
RO_0000086: SO_0000987
location: 1..8550260
location: region:1-8550260:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8550260:1
position: 8550260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8550260:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1697001..1697200
location: region:1697001-1697200:1
BFO_0000051: feature:1697001-1697200:1:region
SIO_000974: d1baeffe-cd4f-4f6a-881e-127935ae9297

position:1697001:1
position: 1697001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1697200:1
position: 1697200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1baeffe-cd4f-4f6a-881e-127935ae9297
SIO_000300: 1
SIO_000628: feature:1697001-1697200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3990259..3990458
location: region:3990259-3990458:1
BFO_0000051: feature:3990259-3990458:1:region
SIO_000974: b6a1369a-0ca1-44fc-99ee-d34aa7fdb3a7

position:3990259:1
position: 3990259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3990458:1
position: 3990458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6a1369a-0ca1-44fc-99ee-d34aa7fdb3a7
SIO_000300: 1
SIO_000628: feature:3990259-3990458:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4303320..4303519
location: region:4303320-4303519:1
BFO_0000051: feature:4303320-4303519:1:region
SIO_000974: 7e54727d-9fbd-44cd-84e7-669e07dc1eb7

position:4303320:1
position: 4303320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4303519:1
position: 4303519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7e54727d-9fbd-44cd-84e7-669e07dc1eb7
SIO_000300: 1
SIO_000628: feature:4303320-4303519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5069063..5069262
location: region:5069063-5069262:1
BFO_0000051: feature:5069063-5069262:1:region
SIO_000974: 24422efb-2f1d-42c5-945a-45af7434c54b

position:5069063:1
position: 5069063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5069262:1
position: 5069262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24422efb-2f1d-42c5-945a-45af7434c54b
SIO_000300: 1
SIO_000628: feature:5069063-5069262:1:region

Esperia sulphurella genome assembly, chromosome: 28.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 28.
sequence version: OX352285.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8516484
topology: linear
RO_0000086: SO_0000987
location: 1..8516484
location: region:1-8516484:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8516484:1
position: 8516484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8516484:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 28
mol type: genomic DNA

Esperia sulphurella genome assembly, chromosome: 29.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: 29.
sequence version: OX352286.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 7806521
topology: linear
RO_0000086: SO_0000987
location: 1..7806521
location: region:1-7806521:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7806521:1
position: 7806521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7806521:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4683245..4683444
location: region:4683245-4683444:1
BFO_0000051: feature:4683245-4683444:1:region
SIO_000974: fbf9422d-eb63-4a5d-a1f5-7611551156ed

position:4683245:1
position: 4683245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4683444:1
position: 4683444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbf9422d-eb63-4a5d-a1f5-7611551156ed
SIO_000300: 1
SIO_000628: feature:4683245-4683444:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7175180..7175379
location: region:7175180-7175379:1
BFO_0000051: feature:7175180-7175379:1:region
SIO_000974: a1b6ce87-9576-4488-b9d6-b628500d1cdb

position:7175180:1
position: 7175180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7175379:1
position: 7175379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a1b6ce87-9576-4488-b9d6-b628500d1cdb
SIO_000300: 1
SIO_000628: feature:7175180-7175379:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7409570..7409769
location: region:7409570-7409769:1
BFO_0000051: feature:7409570-7409769:1:region
SIO_000974: 0cd2373f-0d2c-436a-be0d-5aec344cafb8

position:7409570:1
position: 7409570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7409769:1
position: 7409769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0cd2373f-0d2c-436a-be0d-5aec344cafb8
SIO_000300: 1
SIO_000628: feature:7409570-7409769:1:region

Esperia sulphurella genome assembly, chromosome: Z.
type: Entry
definition: Esperia sulphurella genome assembly, chromosome: Z.
sequence version: OX352287.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26432394
topology: linear
RO_0000086: SO_0000987
location: 1..26432394
location: region:1-26432394:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26432394:1
position: 26432394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26432394:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
chromosome: Z
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6231134..6231333
location: region:6231134-6231333:1
BFO_0000051: feature:6231134-6231333:1:region
SIO_000974: 67df158e-4be6-45e2-bee2-9a23e08c534b

position:6231134:1
position: 6231134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6231333:1
position: 6231333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

67df158e-4be6-45e2-bee2-9a23e08c534b
SIO_000300: 1
SIO_000628: feature:6231134-6231333:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10950490..10950689
location: region:10950490-10950689:1
BFO_0000051: feature:10950490-10950689:1:region
SIO_000974: 41eaa574-8756-49e3-902c-f888f2d2e4bb

position:10950490:1
position: 10950490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10950689:1
position: 10950689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41eaa574-8756-49e3-902c-f888f2d2e4bb
SIO_000300: 1
SIO_000628: feature:10950490-10950689:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13689549..13689748
location: region:13689549-13689748:1
BFO_0000051: feature:13689549-13689748:1:region
SIO_000974: 305f00fd-f8ab-4bc8-abc5-449581857792

position:13689549:1
position: 13689549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13689748:1
position: 13689748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

305f00fd-f8ab-4bc8-abc5-449581857792
SIO_000300: 1
SIO_000628: feature:13689549-13689748:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16752882..16753081
location: region:16752882-16753081:1
BFO_0000051: feature:16752882-16753081:1:region
SIO_000974: 1ae690c3-1d2b-421b-a53c-d7e9ec8682a8

position:16752882:1
position: 16752882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16753081:1
position: 16753081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ae690c3-1d2b-421b-a53c-d7e9ec8682a8
SIO_000300: 1
SIO_000628: feature:16752882-16753081:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19725165..19725364
location: region:19725165-19725364:1
BFO_0000051: feature:19725165-19725364:1:region
SIO_000974: 577a9df0-d39e-43e6-b1a4-3d2c5357b899

position:19725165:1
position: 19725165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19725364:1
position: 19725364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

577a9df0-d39e-43e6-b1a4-3d2c5357b899
SIO_000300: 1
SIO_000628: feature:19725165-19725364:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 2870497
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26344562..26344761
location: region:26344562-26344761:1
BFO_0000051: feature:26344562-26344761:1:region
SIO_000974: 8bb3fea2-9d9b-49d6-a5d5-5158ca11dc8b

position:26344562:1
position: 26344562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26344761:1
position: 26344761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bb3fea2-9d9b-49d6-a5d5-5158ca11dc8b
SIO_000300: 1
SIO_000628: feature:26344562-26344761:1:region

Esperia sulphurella genome assembly, organelle: mitochondrion.
type: Entry
definition: Esperia sulphurella genome assembly, organelle: mitochondrion.
sequence version: OX352288.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: mitochondrion Esperia sulphurella
organism: Esperia sulphurella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Oecophoridae; Oecophorinae; Esperia.
reference: 1
comment: The assembly ilEspSulp1.1 is based on 62x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16169
topology: linear
RO_0000086: SO_0000987
location: 1..16169
location: region:1-16169:1
RO_0002162: 2870497

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16169:1
position: 16169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16169:1:source
BFO_0000050: sequence
organism: Esperia sulphurella
organelle: mitochondrion
mol type: genomic DNA

Pammene aurita genome assembly, chromosome: Z.
type: Entry
definition: Pammene aurita genome assembly, chromosome: Z.
sequence version: OX352289.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 72712871
topology: linear
RO_0000086: SO_0000987
location: 1..72712871
location: region:1-72712871:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72712871:1
position: 72712871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-72712871:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: Z
mol type: genomic DNA

1870148
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 321890..322089
location: region:321890-322089:1
BFO_0000051: feature:321890-322089:1:region
SIO_000974: 44a9c2fe-92b1-4160-a2da-bea3ccc7a531

position:321890:1
position: 321890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322089:1
position: 322089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44a9c2fe-92b1-4160-a2da-bea3ccc7a531
SIO_000300: 1
SIO_000628: feature:321890-322089:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1227575..1227774
location: region:1227575-1227774:1
BFO_0000051: feature:1227575-1227774:1:region
SIO_000974: 019e60c8-2004-4645-95fe-610bdfd83e16

position:1227575:1
position: 1227575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1227774:1
position: 1227774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

019e60c8-2004-4645-95fe-610bdfd83e16
SIO_000300: 1
SIO_000628: feature:1227575-1227774:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28989740..28989939
location: region:28989740-28989939:1
BFO_0000051: feature:28989740-28989939:1:region
SIO_000974: b508533a-c4e2-4bed-8734-f443980ac4a4

position:28989740:1
position: 28989740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28989939:1
position: 28989939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b508533a-c4e2-4bed-8734-f443980ac4a4
SIO_000300: 1
SIO_000628: feature:28989740-28989939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38033906..38034105
location: region:38033906-38034105:1
BFO_0000051: feature:38033906-38034105:1:region
SIO_000974: e04dc95c-eb4b-44a0-90df-fd2f17ffd6e0

position:38033906:1
position: 38033906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38034105:1
position: 38034105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e04dc95c-eb4b-44a0-90df-fd2f17ffd6e0
SIO_000300: 1
SIO_000628: feature:38033906-38034105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38811754..38811953
location: region:38811754-38811953:1
BFO_0000051: feature:38811754-38811953:1:region
SIO_000974: dbed7d3b-5e12-4cbf-afd6-2f16734f43f2

position:38811754:1
position: 38811754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38811953:1
position: 38811953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dbed7d3b-5e12-4cbf-afd6-2f16734f43f2
SIO_000300: 1
SIO_000628: feature:38811754-38811953:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 71893672..71893871
location: region:71893672-71893871:1
BFO_0000051: feature:71893672-71893871:1:region
SIO_000974: 9eb4fe16-ba45-4240-b95d-9a2765e8a2e2

position:71893672:1
position: 71893672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71893871:1
position: 71893871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9eb4fe16-ba45-4240-b95d-9a2765e8a2e2
SIO_000300: 1
SIO_000628: feature:71893672-71893871:1:region

Pammene aurita genome assembly, chromosome: 1.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 1.
sequence version: OX352290.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 55376203
topology: linear
RO_0000086: SO_0000987
location: 1..55376203
location: region:1-55376203:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55376203:1
position: 55376203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-55376203:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16780025..16780224
location: region:16780025-16780224:1
BFO_0000051: feature:16780025-16780224:1:region
SIO_000974: f90b246f-66bb-41e2-b16d-0e527df2fe19

position:16780025:1
position: 16780025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16780224:1
position: 16780224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f90b246f-66bb-41e2-b16d-0e527df2fe19
SIO_000300: 1
SIO_000628: feature:16780025-16780224:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25840544..25840743
location: region:25840544-25840743:1
BFO_0000051: feature:25840544-25840743:1:region
SIO_000974: a42668b1-ebc4-4c8e-93e8-9d393d1653f7

position:25840544:1
position: 25840544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25840743:1
position: 25840743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a42668b1-ebc4-4c8e-93e8-9d393d1653f7
SIO_000300: 1
SIO_000628: feature:25840544-25840743:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26266330..26266529
location: region:26266330-26266529:1
BFO_0000051: feature:26266330-26266529:1:region
SIO_000974: 2f6d66dd-8584-44d9-8437-692697f545f4

position:26266330:1
position: 26266330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26266529:1
position: 26266529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2f6d66dd-8584-44d9-8437-692697f545f4
SIO_000300: 1
SIO_000628: feature:26266330-26266529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41723026..41723225
location: region:41723026-41723225:1
BFO_0000051: feature:41723026-41723225:1:region
SIO_000974: ec3bf853-339d-453f-9358-ea69104b78dc

position:41723026:1
position: 41723026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41723225:1
position: 41723225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec3bf853-339d-453f-9358-ea69104b78dc
SIO_000300: 1
SIO_000628: feature:41723026-41723225:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47260828..47261027
location: region:47260828-47261027:1
BFO_0000051: feature:47260828-47261027:1:region
SIO_000974: f1a66db0-fea8-40b6-b2ca-f7d843a8b7ae

position:47260828:1
position: 47260828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47261027:1
position: 47261027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1a66db0-fea8-40b6-b2ca-f7d843a8b7ae
SIO_000300: 1
SIO_000628: feature:47260828-47261027:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50711036..50711235
location: region:50711036-50711235:1
BFO_0000051: feature:50711036-50711235:1:region
SIO_000974: d756fd35-4d5e-4b19-9714-6a2a80c47ad6

position:50711036:1
position: 50711036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50711235:1
position: 50711235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d756fd35-4d5e-4b19-9714-6a2a80c47ad6
SIO_000300: 1
SIO_000628: feature:50711036-50711235:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54999782..54999981
location: region:54999782-54999981:1
BFO_0000051: feature:54999782-54999981:1:region
SIO_000974: 7509c415-5973-4470-b644-004f5f05415e

position:54999782:1
position: 54999782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54999981:1
position: 54999981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7509c415-5973-4470-b644-004f5f05415e
SIO_000300: 1
SIO_000628: feature:54999782-54999981:1:region

Pammene aurita genome assembly, chromosome: 2.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 2.
sequence version: OX352291.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 49731725
topology: linear
RO_0000086: SO_0000987
location: 1..49731725
location: region:1-49731725:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49731725:1
position: 49731725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-49731725:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6854300..6854499
location: region:6854300-6854499:1
BFO_0000051: feature:6854300-6854499:1:region
SIO_000974: f2940b45-899e-413f-b6a6-9e752a1d0237

position:6854300:1
position: 6854300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6854499:1
position: 6854499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2940b45-899e-413f-b6a6-9e752a1d0237
SIO_000300: 1
SIO_000628: feature:6854300-6854499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16536134..16536333
location: region:16536134-16536333:1
BFO_0000051: feature:16536134-16536333:1:region
SIO_000974: 882c80a1-5d71-4dc3-87b9-58f8a05ad29d

position:16536134:1
position: 16536134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16536333:1
position: 16536333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

882c80a1-5d71-4dc3-87b9-58f8a05ad29d
SIO_000300: 1
SIO_000628: feature:16536134-16536333:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18466067..18466266
location: region:18466067-18466266:1
BFO_0000051: feature:18466067-18466266:1:region
SIO_000974: 0d891c26-8616-42c5-8b95-c3dfe3d96866

position:18466067:1
position: 18466067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18466266:1
position: 18466266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0d891c26-8616-42c5-8b95-c3dfe3d96866
SIO_000300: 1
SIO_000628: feature:18466067-18466266:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18558419..18558618
location: region:18558419-18558618:1
BFO_0000051: feature:18558419-18558618:1:region
SIO_000974: c33021aa-cecc-4a32-b95d-2b6f27f1abc8

position:18558419:1
position: 18558419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18558618:1
position: 18558618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c33021aa-cecc-4a32-b95d-2b6f27f1abc8
SIO_000300: 1
SIO_000628: feature:18558419-18558618:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20101959..20102158
location: region:20101959-20102158:1
BFO_0000051: feature:20101959-20102158:1:region
SIO_000974: 4556c67b-d794-4707-8a0e-9c4b7dafd390

position:20101959:1
position: 20101959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20102158:1
position: 20102158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4556c67b-d794-4707-8a0e-9c4b7dafd390
SIO_000300: 1
SIO_000628: feature:20101959-20102158:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22259821..22260020
location: region:22259821-22260020:1
BFO_0000051: feature:22259821-22260020:1:region
SIO_000974: 0e69ed0f-83d2-41b1-9a2c-8ee8c8cb57d3

position:22259821:1
position: 22259821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22260020:1
position: 22260020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e69ed0f-83d2-41b1-9a2c-8ee8c8cb57d3
SIO_000300: 1
SIO_000628: feature:22259821-22260020:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26896661..26896860
location: region:26896661-26896860:1
BFO_0000051: feature:26896661-26896860:1:region
SIO_000974: f4aacfa9-aca4-4caf-9b40-fa89523d1ff4

position:26896661:1
position: 26896661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26896860:1
position: 26896860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f4aacfa9-aca4-4caf-9b40-fa89523d1ff4
SIO_000300: 1
SIO_000628: feature:26896661-26896860:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35633776..35633975
location: region:35633776-35633975:1
BFO_0000051: feature:35633776-35633975:1:region
SIO_000974: db593938-0e81-40ee-b3b4-d99c588cade8

position:35633776:1
position: 35633776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35633975:1
position: 35633975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db593938-0e81-40ee-b3b4-d99c588cade8
SIO_000300: 1
SIO_000628: feature:35633776-35633975:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43645188..43645387
location: region:43645188-43645387:1
BFO_0000051: feature:43645188-43645387:1:region
SIO_000974: f054695d-4a8d-4c65-b811-800b4b4ee775

position:43645188:1
position: 43645188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43645387:1
position: 43645387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f054695d-4a8d-4c65-b811-800b4b4ee775
SIO_000300: 1
SIO_000628: feature:43645188-43645387:1:region

Pammene aurita genome assembly, chromosome: 3.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 3.
sequence version: OX352292.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 47152332
topology: linear
RO_0000086: SO_0000987
location: 1..47152332
location: region:1-47152332:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47152332:1
position: 47152332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-47152332:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25026821..25027020
location: region:25026821-25027020:1
BFO_0000051: feature:25026821-25027020:1:region
SIO_000974: df4a87fd-54c3-4ca3-a351-87a8501a12f4

position:25026821:1
position: 25026821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25027020:1
position: 25027020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df4a87fd-54c3-4ca3-a351-87a8501a12f4
SIO_000300: 1
SIO_000628: feature:25026821-25027020:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28310456..28310655
location: region:28310456-28310655:1
BFO_0000051: feature:28310456-28310655:1:region
SIO_000974: 4217a9f6-c218-424f-94da-691562b2a203

position:28310456:1
position: 28310456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28310655:1
position: 28310655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4217a9f6-c218-424f-94da-691562b2a203
SIO_000300: 1
SIO_000628: feature:28310456-28310655:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36214489..36214688
location: region:36214489-36214688:1
BFO_0000051: feature:36214489-36214688:1:region
SIO_000974: 1747128f-0de6-4d36-ba71-05911a13315b

position:36214489:1
position: 36214489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36214688:1
position: 36214688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1747128f-0de6-4d36-ba71-05911a13315b
SIO_000300: 1
SIO_000628: feature:36214489-36214688:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39094144..39094343
location: region:39094144-39094343:1
BFO_0000051: feature:39094144-39094343:1:region
SIO_000974: 73d26f37-4df1-4df2-9fbd-cc0b6cf3ddda

position:39094144:1
position: 39094144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39094343:1
position: 39094343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73d26f37-4df1-4df2-9fbd-cc0b6cf3ddda
SIO_000300: 1
SIO_000628: feature:39094144-39094343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43554135..43554334
location: region:43554135-43554334:1
BFO_0000051: feature:43554135-43554334:1:region
SIO_000974: 0de948df-b6a4-446d-a4f3-42e4429494d1

position:43554135:1
position: 43554135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43554334:1
position: 43554334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0de948df-b6a4-446d-a4f3-42e4429494d1
SIO_000300: 1
SIO_000628: feature:43554135-43554334:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44317133..44317332
location: region:44317133-44317332:1
BFO_0000051: feature:44317133-44317332:1:region
SIO_000974: ab6b70f0-2b65-4676-b966-9b4bad96fe61

position:44317133:1
position: 44317133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44317332:1
position: 44317332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab6b70f0-2b65-4676-b966-9b4bad96fe61
SIO_000300: 1
SIO_000628: feature:44317133-44317332:1:region

Pammene aurita genome assembly, chromosome: 5.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 5.
sequence version: OX352293.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 44290306
topology: linear
RO_0000086: SO_0000987
location: 1..44290306
location: region:1-44290306:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44290306:1
position: 44290306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-44290306:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1123315..1123514
location: region:1123315-1123514:1
BFO_0000051: feature:1123315-1123514:1:region
SIO_000974: 99f25302-13fb-46fa-ba41-06b2585cbe49

position:1123315:1
position: 1123315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1123514:1
position: 1123514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

99f25302-13fb-46fa-ba41-06b2585cbe49
SIO_000300: 1
SIO_000628: feature:1123315-1123514:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11295109..11295308
location: region:11295109-11295308:1
BFO_0000051: feature:11295109-11295308:1:region
SIO_000974: 06591593-1602-4cbe-a523-f464a1188d40

position:11295109:1
position: 11295109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11295308:1
position: 11295308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06591593-1602-4cbe-a523-f464a1188d40
SIO_000300: 1
SIO_000628: feature:11295109-11295308:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12737558..12737757
location: region:12737558-12737757:1
BFO_0000051: feature:12737558-12737757:1:region
SIO_000974: 8af75ba6-e32c-4687-a677-5ae49f0fcf5f

position:12737558:1
position: 12737558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12737757:1
position: 12737757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8af75ba6-e32c-4687-a677-5ae49f0fcf5f
SIO_000300: 1
SIO_000628: feature:12737558-12737757:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15297248..15297447
location: region:15297248-15297447:1
BFO_0000051: feature:15297248-15297447:1:region
SIO_000974: 12227f98-1228-4b60-a835-f71ba4b49d5a

position:15297248:1
position: 15297248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15297447:1
position: 15297447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

12227f98-1228-4b60-a835-f71ba4b49d5a
SIO_000300: 1
SIO_000628: feature:15297248-15297447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36916219..36916418
location: region:36916219-36916418:1
BFO_0000051: feature:36916219-36916418:1:region
SIO_000974: b674f113-8457-47e2-8db9-cce73be22fc4

position:36916219:1
position: 36916219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36916418:1
position: 36916418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b674f113-8457-47e2-8db9-cce73be22fc4
SIO_000300: 1
SIO_000628: feature:36916219-36916418:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40034922..40035121
location: region:40034922-40035121:1
BFO_0000051: feature:40034922-40035121:1:region
SIO_000974: aedea661-3173-4689-b2a5-1ffb43a15d02

position:40034922:1
position: 40034922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40035121:1
position: 40035121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aedea661-3173-4689-b2a5-1ffb43a15d02
SIO_000300: 1
SIO_000628: feature:40034922-40035121:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40696653..40696852
location: region:40696653-40696852:1
BFO_0000051: feature:40696653-40696852:1:region
SIO_000974: 420cc353-20a5-4a22-a86b-2796fbdbd822

position:40696653:1
position: 40696653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40696852:1
position: 40696852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

420cc353-20a5-4a22-a86b-2796fbdbd822
SIO_000300: 1
SIO_000628: feature:40696653-40696852:1:region

Pammene aurita genome assembly, chromosome: 9.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 9.
sequence version: OX352294.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 43248420
topology: linear
RO_0000086: SO_0000987
location: 1..43248420
location: region:1-43248420:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43248420:1
position: 43248420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-43248420:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1308538..1308737
location: region:1308538-1308737:1
BFO_0000051: feature:1308538-1308737:1:region
SIO_000974: 71928345-2cf6-41e7-b215-476b3fe62579

position:1308538:1
position: 1308538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1308737:1
position: 1308737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

71928345-2cf6-41e7-b215-476b3fe62579
SIO_000300: 1
SIO_000628: feature:1308538-1308737:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5117770..5117969
location: region:5117770-5117969:1
BFO_0000051: feature:5117770-5117969:1:region
SIO_000974: 5e6da129-b956-4812-ab36-c96bba6af684

position:5117770:1
position: 5117770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5117969:1
position: 5117969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e6da129-b956-4812-ab36-c96bba6af684
SIO_000300: 1
SIO_000628: feature:5117770-5117969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8367343..8367542
location: region:8367343-8367542:1
BFO_0000051: feature:8367343-8367542:1:region
SIO_000974: a72efdae-0907-49b5-a845-57b0c3cff5a9

position:8367343:1
position: 8367343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8367542:1
position: 8367542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8367343-8367542:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12336306..12336505
location: region:12336306-12336505:1
BFO_0000051: feature:12336306-12336505:1:region
SIO_000974: 3bdb6a3c-97ac-4ca3-b0b5-29d389838943

position:12336306:1
position: 12336306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12336505:1
position: 12336505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12336306-12336505:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17212602..17212801
location: region:17212602-17212801:1
BFO_0000051: feature:17212602-17212801:1:region
SIO_000974: 86f51c61-e1d4-4040-ac2d-e8a4682d9978

position:17212602:1
position: 17212602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17212801:1
position: 17212801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17212602-17212801:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18279356..18279555
location: region:18279356-18279555:1
BFO_0000051: feature:18279356-18279555:1:region
SIO_000974: 8b97fa8b-d39a-45c4-9232-1d447fdb3323

position:18279356:1
position: 18279356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18279555:1
position: 18279555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:18279356-18279555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18832420..18832619
location: region:18832420-18832619:1
BFO_0000051: feature:18832420-18832619:1:region
SIO_000974: 9d251f16-f32b-47cb-86ea-8920768bc15f

position:18832420:1
position: 18832420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18832619:1
position: 18832619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:18832420-18832619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19390389..19390588
location: region:19390389-19390588:1
BFO_0000051: feature:19390389-19390588:1:region
SIO_000974: 9a24fc69-6798-40f0-8187-04e949886ca9

position:19390389:1
position: 19390389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19390588:1
position: 19390588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19390389-19390588:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25059579..25059778
location: region:25059579-25059778:1
BFO_0000051: feature:25059579-25059778:1:region
SIO_000974: e7d793c1-1779-4e24-b1a6-af6d0cd27908

position:25059579:1
position: 25059579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25059778:1
position: 25059778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25059579-25059778:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29265527..29265726
location: region:29265527-29265726:1
BFO_0000051: feature:29265527-29265726:1:region
SIO_000974: db7253af-b2cf-4712-8116-850c1488a993

position:29265527:1
position: 29265527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29265726:1
position: 29265726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db7253af-b2cf-4712-8116-850c1488a993
SIO_000300: 1
SIO_000628: feature:29265527-29265726:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42032749..42032948
location: region:42032749-42032948:1
BFO_0000051: feature:42032749-42032948:1:region
SIO_000974: 2d084ee4-8225-4c4d-851c-5773852053e6

position:42032749:1
position: 42032749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42032948:1
position: 42032948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d084ee4-8225-4c4d-851c-5773852053e6
SIO_000300: 1
SIO_000628: feature:42032749-42032948:1:region

Pammene aurita genome assembly, chromosome: 14.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 14.
sequence version: OX352295.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 42621774
topology: linear
RO_0000086: SO_0000987
location: 1..42621774
location: region:1-42621774:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42621774:1
position: 42621774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-42621774:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31990593..31990792
location: region:31990593-31990792:1
BFO_0000051: feature:31990593-31990792:1:region
SIO_000974: f93e5f0d-b2b8-44f4-8d05-1bb6903604cb

position:31990593:1
position: 31990593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31990792:1
position: 31990792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f93e5f0d-b2b8-44f4-8d05-1bb6903604cb
SIO_000300: 1
SIO_000628: feature:31990593-31990792:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38005820..38006019
location: region:38005820-38006019:1
BFO_0000051: feature:38005820-38006019:1:region
SIO_000974: e4339be7-3151-453b-afd9-1b2be5b46380

position:38005820:1
position: 38005820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38006019:1
position: 38006019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4339be7-3151-453b-afd9-1b2be5b46380
SIO_000300: 1
SIO_000628: feature:38005820-38006019:1:region

Pammene aurita genome assembly, chromosome: 4.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 4.
sequence version: OX352296.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 41959394
topology: linear
RO_0000086: SO_0000987
location: 1..41959394
location: region:1-41959394:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41959394:1
position: 41959394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-41959394:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3027977..3028176
location: region:3027977-3028176:1
BFO_0000051: feature:3027977-3028176:1:region
SIO_000974: 352ebd11-bbb8-4918-8714-e36885c79714

position:3027977:1
position: 3027977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3028176:1
position: 3028176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

352ebd11-bbb8-4918-8714-e36885c79714
SIO_000300: 1
SIO_000628: feature:3027977-3028176:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12264348..12264547
location: region:12264348-12264547:1
BFO_0000051: feature:12264348-12264547:1:region
SIO_000974: b0103b75-d1f0-4c8e-a6c6-3b0099c71bb8

position:12264348:1
position: 12264348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12264547:1
position: 12264547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0103b75-d1f0-4c8e-a6c6-3b0099c71bb8
SIO_000300: 1
SIO_000628: feature:12264348-12264547:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16608548..16608747
location: region:16608548-16608747:1
BFO_0000051: feature:16608548-16608747:1:region
SIO_000974: ad996c3c-01ac-4e9d-a1eb-aab2521b96c1

position:16608548:1
position: 16608548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16608747:1
position: 16608747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:16608548-16608747:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27938261..27938460
location: region:27938261-27938460:1
BFO_0000051: feature:27938261-27938460:1:region
SIO_000974: 63f0fe60-cfda-4cab-9896-37cc8f6f935f

position:27938261:1
position: 27938261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27938460:1
position: 27938460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:27938261-27938460:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28517701..28517900
location: region:28517701-28517900:1
BFO_0000051: feature:28517701-28517900:1:region
SIO_000974: e018ab6a-4524-4a1e-88b8-5415a5f5bbc8

position:28517701:1
position: 28517701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28517900:1
position: 28517900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e018ab6a-4524-4a1e-88b8-5415a5f5bbc8
SIO_000300: 1
SIO_000628: feature:28517701-28517900:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38498901..38499100
location: region:38498901-38499100:1
BFO_0000051: feature:38498901-38499100:1:region
SIO_000974: 383e1ab5-8910-4ab6-bf28-ba006f81af8c

position:38498901:1
position: 38498901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38499100:1
position: 38499100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:38498901-38499100:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39070781..39070980
location: region:39070781-39070980:1
BFO_0000051: feature:39070781-39070980:1:region
SIO_000974: 226ee22c-9745-48b3-8046-6048b3749081

position:39070781:1
position: 39070781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39070980:1
position: 39070980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39070781-39070980:1:region

Pammene aurita genome assembly, chromosome: 7.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 7.
sequence version: OX352297.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 40098906
topology: linear
RO_0000086: SO_0000987
location: 1..40098906
location: region:1-40098906:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40098906:1
position: 40098906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-40098906:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4237047..4237246
location: region:4237047-4237246:1
BFO_0000051: feature:4237047-4237246:1:region
SIO_000974: 1d07885d-e08f-4b4e-a3b9-fffc0f934b2c

position:4237047:1
position: 4237047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4237246:1
position: 4237246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d07885d-e08f-4b4e-a3b9-fffc0f934b2c
SIO_000300: 1
SIO_000628: feature:4237047-4237246:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12463586..12463785
location: region:12463586-12463785:1
BFO_0000051: feature:12463586-12463785:1:region
SIO_000974: 70fc4af3-f93a-4170-aa1b-e61c16c09667

position:12463586:1
position: 12463586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12463785:1
position: 12463785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12463586-12463785:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28439786..28439985
location: region:28439786-28439985:1
BFO_0000051: feature:28439786-28439985:1:region
SIO_000974: e284be3c-a94c-48c9-9ebf-7c7c8679e879

position:28439786:1
position: 28439786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28439985:1
position: 28439985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e284be3c-a94c-48c9-9ebf-7c7c8679e879
SIO_000300: 1
SIO_000628: feature:28439786-28439985:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29604960..29605159
location: region:29604960-29605159:1
BFO_0000051: feature:29604960-29605159:1:region
SIO_000974: 5cdc510f-58e3-4155-b4b9-b41dcbdd3376

position:29604960:1
position: 29604960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29605159:1
position: 29605159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:29604960-29605159:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33381160..33381359
location: region:33381160-33381359:1
BFO_0000051: feature:33381160-33381359:1:region
SIO_000974: 8706144d-59bc-408b-bb5c-df25405f2079

position:33381160:1
position: 33381160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33381359:1
position: 33381359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33381160-33381359:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34104946..34105145
location: region:34104946-34105145:1
BFO_0000051: feature:34104946-34105145:1:region
SIO_000974: 4657e2ef-1a55-49db-b8b7-70660309a080

position:34104946:1
position: 34104946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34105145:1
position: 34105145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:34104946-34105145:1:region

Pammene aurita genome assembly, chromosome: 8.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 8.
sequence version: OX352298.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 39562839
topology: linear
RO_0000086: SO_0000987
location: 1..39562839
location: region:1-39562839:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39562839:1
position: 39562839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39562839:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4815001..4815200
location: region:4815001-4815200:1
BFO_0000051: feature:4815001-4815200:1:region
SIO_000974: edf7fd6c-a26c-4833-8fc1-23d5df07db3d

position:4815001:1
position: 4815001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4815200:1
position: 4815200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

edf7fd6c-a26c-4833-8fc1-23d5df07db3d
SIO_000300: 1
SIO_000628: feature:4815001-4815200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12167887..12168086
location: region:12167887-12168086:1
BFO_0000051: feature:12167887-12168086:1:region
SIO_000974: be420d21-2395-4440-8508-61cef9152dfa

position:12167887:1
position: 12167887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12168086:1
position: 12168086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12167887-12168086:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12968157..12968356
location: region:12968157-12968356:1
BFO_0000051: feature:12968157-12968356:1:region
SIO_000974: d1b44f15-f91d-4a03-ba50-1b7b8bc40b05

position:12968157:1
position: 12968157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12968356:1
position: 12968356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12968157-12968356:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22700333..22700532
location: region:22700333-22700532:1
BFO_0000051: feature:22700333-22700532:1:region
SIO_000974: 77cb7561-dda3-495b-84b2-d54a5d9803e8

position:22700333:1
position: 22700333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22700532:1
position: 22700532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:22700333-22700532:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23082750..23082949
location: region:23082750-23082949:1
BFO_0000051: feature:23082750-23082949:1:region
SIO_000974: 9be89e03-11a2-43ea-87d8-c8b3f34c2649

position:23082750:1
position: 23082750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23082949:1
position: 23082949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:23082750-23082949:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23400841..23401040
location: region:23400841-23401040:1
BFO_0000051: feature:23400841-23401040:1:region
SIO_000974: 1af6b5d5-36ed-4a6e-9567-f7d8497d8e5d

position:23400841:1
position: 23400841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23401040:1
position: 23401040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1af6b5d5-36ed-4a6e-9567-f7d8497d8e5d
SIO_000300: 1
SIO_000628: feature:23400841-23401040:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23485860..23486059
location: region:23485860-23486059:1
BFO_0000051: feature:23485860-23486059:1:region
SIO_000974: 59068f07-20b9-4c6c-9503-47f1963322db

position:23485860:1
position: 23485860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23486059:1
position: 23486059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59068f07-20b9-4c6c-9503-47f1963322db
SIO_000300: 1
SIO_000628: feature:23485860-23486059:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23756678..23756877
location: region:23756678-23756877:1
BFO_0000051: feature:23756678-23756877:1:region
SIO_000974: 6d5fd318-5fc4-4300-bc58-a5fcc7855f53

position:23756678:1
position: 23756678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23756877:1
position: 23756877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d5fd318-5fc4-4300-bc58-a5fcc7855f53
SIO_000300: 1
SIO_000628: feature:23756678-23756877:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32831609..32831808
location: region:32831609-32831808:1
BFO_0000051: feature:32831609-32831808:1:region
SIO_000974: 5763e4c5-d985-46c1-b946-64288bdfce57

position:32831609:1
position: 32831609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32831808:1
position: 32831808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5763e4c5-d985-46c1-b946-64288bdfce57
SIO_000300: 1
SIO_000628: feature:32831609-32831808:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34999062..34999261
location: region:34999062-34999261:1
BFO_0000051: feature:34999062-34999261:1:region
SIO_000974: 0a3b4e17-57a2-4668-b77d-46f31687c7bd

position:34999062:1
position: 34999062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34999261:1
position: 34999261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a3b4e17-57a2-4668-b77d-46f31687c7bd
SIO_000300: 1
SIO_000628: feature:34999062-34999261:1:region

Pammene aurita genome assembly, chromosome: 6.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 6.
sequence version: OX352299.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 37834398
topology: linear
RO_0000086: SO_0000987
location: 1..37834398
location: region:1-37834398:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37834398:1
position: 37834398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37834398:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4200222..4200421
location: region:4200222-4200421:1
BFO_0000051: feature:4200222-4200421:1:region
SIO_000974: 372d5040-4d74-455d-90cb-420a99ac73b5

position:4200222:1
position: 4200222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4200421:1
position: 4200421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

372d5040-4d74-455d-90cb-420a99ac73b5
SIO_000300: 1
SIO_000628: feature:4200222-4200421:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6586164..6586363
location: region:6586164-6586363:1
BFO_0000051: feature:6586164-6586363:1:region
SIO_000974: ee52cfc8-e31e-4e95-a3db-f69736496094

position:6586164:1
position: 6586164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6586363:1
position: 6586363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee52cfc8-e31e-4e95-a3db-f69736496094
SIO_000300: 1
SIO_000628: feature:6586164-6586363:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14177563..14177762
location: region:14177563-14177762:1
BFO_0000051: feature:14177563-14177762:1:region
SIO_000974: d8e526b8-d79d-4a0b-9484-ed920dbef0dd

position:14177563:1
position: 14177563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14177762:1
position: 14177762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8e526b8-d79d-4a0b-9484-ed920dbef0dd
SIO_000300: 1
SIO_000628: feature:14177563-14177762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20655464..20655663
location: region:20655464-20655663:1
BFO_0000051: feature:20655464-20655663:1:region
SIO_000974: 38331077-d5dd-4322-abdd-1c3b5903e1e1

position:20655464:1
position: 20655464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20655663:1
position: 20655663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

38331077-d5dd-4322-abdd-1c3b5903e1e1
SIO_000300: 1
SIO_000628: feature:20655464-20655663:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23619498..23619697
location: region:23619498-23619697:1
BFO_0000051: feature:23619498-23619697:1:region
SIO_000974: 9387dec8-7e88-4fc2-bff5-339dfa540905

position:23619498:1
position: 23619498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23619697:1
position: 23619697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9387dec8-7e88-4fc2-bff5-339dfa540905
SIO_000300: 1
SIO_000628: feature:23619498-23619697:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28335004..28335203
location: region:28335004-28335203:1
BFO_0000051: feature:28335004-28335203:1:region
SIO_000974: fce8a4f1-d67b-4a02-a489-6239267cc5f7

position:28335004:1
position: 28335004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28335203:1
position: 28335203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fce8a4f1-d67b-4a02-a489-6239267cc5f7
SIO_000300: 1
SIO_000628: feature:28335004-28335203:1:region

Pammene aurita genome assembly, chromosome: 10.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 10.
sequence version: OX352300.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 37501620
topology: linear
RO_0000086: SO_0000987
location: 1..37501620
location: region:1-37501620:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37501620:1
position: 37501620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37501620:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17395704..17395903
location: region:17395704-17395903:1
BFO_0000051: feature:17395704-17395903:1:region
SIO_000974: bc420aa3-f2ca-4076-ba3c-aeecb34d8190

position:17395704:1
position: 17395704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17395903:1
position: 17395903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc420aa3-f2ca-4076-ba3c-aeecb34d8190
SIO_000300: 1
SIO_000628: feature:17395704-17395903:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17649792..17649991
location: region:17649792-17649991:1
BFO_0000051: feature:17649792-17649991:1:region
SIO_000974: c772aa55-b149-46d0-b81c-237cae2410b9

position:17649792:1
position: 17649792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17649991:1
position: 17649991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c772aa55-b149-46d0-b81c-237cae2410b9
SIO_000300: 1
SIO_000628: feature:17649792-17649991:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21606402..21606601
location: region:21606402-21606601:1
BFO_0000051: feature:21606402-21606601:1:region
SIO_000974: ca8b882b-7ed9-4ee8-b85e-1ad9623c2723

position:21606402:1
position: 21606402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21606601:1
position: 21606601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ca8b882b-7ed9-4ee8-b85e-1ad9623c2723
SIO_000300: 1
SIO_000628: feature:21606402-21606601:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25079016..25079215
location: region:25079016-25079215:1
BFO_0000051: feature:25079016-25079215:1:region
SIO_000974: 61643967-a0c9-4496-80c8-a0df6a3ea662

position:25079016:1
position: 25079016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25079215:1
position: 25079215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

61643967-a0c9-4496-80c8-a0df6a3ea662
SIO_000300: 1
SIO_000628: feature:25079016-25079215:1:region

Pammene aurita genome assembly, chromosome: 12.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 12.
sequence version: OX352301.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 36884595
topology: linear
RO_0000086: SO_0000987
location: 1..36884595
location: region:1-36884595:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36884595:1
position: 36884595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36884595:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 211003..211202
location: region:211003-211202:1
BFO_0000051: feature:211003-211202:1:region
SIO_000974: 352d0b8f-e9a4-4315-83ab-61af3405b501

position:211003:1
position: 211003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211202:1
position: 211202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

352d0b8f-e9a4-4315-83ab-61af3405b501
SIO_000300: 1
SIO_000628: feature:211003-211202:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4337914..4338113
location: region:4337914-4338113:1
BFO_0000051: feature:4337914-4338113:1:region
SIO_000974: 43209167-899a-417c-a99c-90693798a66a

position:4337914:1
position: 4337914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4338113:1
position: 4338113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

43209167-899a-417c-a99c-90693798a66a
SIO_000300: 1
SIO_000628: feature:4337914-4338113:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30992751..30992950
location: region:30992751-30992950:1
BFO_0000051: feature:30992751-30992950:1:region
SIO_000974: bd17c299-f738-491b-bd1a-41362daacf3e

position:30992751:1
position: 30992751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30992950:1
position: 30992950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd17c299-f738-491b-bd1a-41362daacf3e
SIO_000300: 1
SIO_000628: feature:30992751-30992950:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31550248..31550447
location: region:31550248-31550447:1
BFO_0000051: feature:31550248-31550447:1:region
SIO_000974: 5b95405c-6215-45bd-8622-008db60b4c6c

position:31550248:1
position: 31550248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31550447:1
position: 31550447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b95405c-6215-45bd-8622-008db60b4c6c
SIO_000300: 1
SIO_000628: feature:31550248-31550447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31572946..31573145
location: region:31572946-31573145:1
BFO_0000051: feature:31572946-31573145:1:region
SIO_000974: c2044a2b-9284-43b6-97f5-1d0d179e04ac

position:31572946:1
position: 31572946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31573145:1
position: 31573145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2044a2b-9284-43b6-97f5-1d0d179e04ac
SIO_000300: 1
SIO_000628: feature:31572946-31573145:1:region

Pammene aurita genome assembly, chromosome: 19.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 19.
sequence version: OX352302.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 35483473
topology: linear
RO_0000086: SO_0000987
location: 1..35483473
location: region:1-35483473:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35483473:1
position: 35483473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35483473:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4022255..4022454
location: region:4022255-4022454:1
BFO_0000051: feature:4022255-4022454:1:region
SIO_000974: b022451d-db8c-4fae-9b23-0dd4fe1fba7f

position:4022255:1
position: 4022255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4022454:1
position: 4022454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b022451d-db8c-4fae-9b23-0dd4fe1fba7f
SIO_000300: 1
SIO_000628: feature:4022255-4022454:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18890320..18890519
location: region:18890320-18890519:1
BFO_0000051: feature:18890320-18890519:1:region
SIO_000974: a304e600-625e-4db7-a497-71e896042e8d

position:18890320:1
position: 18890320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18890519:1
position: 18890519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a304e600-625e-4db7-a497-71e896042e8d
SIO_000300: 1
SIO_000628: feature:18890320-18890519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26050305..26050504
location: region:26050305-26050504:1
BFO_0000051: feature:26050305-26050504:1:region
SIO_000974: e31be9c7-e426-4800-87ca-4d324a324989

position:26050305:1
position: 26050305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26050504:1
position: 26050504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e31be9c7-e426-4800-87ca-4d324a324989
SIO_000300: 1
SIO_000628: feature:26050305-26050504:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28005074..28005273
location: region:28005074-28005273:1
BFO_0000051: feature:28005074-28005273:1:region
SIO_000974: c74dcd66-7e48-4c4c-85da-8eaa854b36cd

position:28005074:1
position: 28005074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28005273:1
position: 28005273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c74dcd66-7e48-4c4c-85da-8eaa854b36cd
SIO_000300: 1
SIO_000628: feature:28005074-28005273:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28354274..28354473
location: region:28354274-28354473:1
BFO_0000051: feature:28354274-28354473:1:region
SIO_000974: b019e9dc-b35b-4e70-a6cb-b8562e7a97c7

position:28354274:1
position: 28354274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28354473:1
position: 28354473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b019e9dc-b35b-4e70-a6cb-b8562e7a97c7
SIO_000300: 1
SIO_000628: feature:28354274-28354473:1:region

Pammene aurita genome assembly, chromosome: 13.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 13.
sequence version: OX352303.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 35412737
topology: linear
RO_0000086: SO_0000987
location: 1..35412737
location: region:1-35412737:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35412737:1
position: 35412737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35412737:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3408001..3408200
location: region:3408001-3408200:1
BFO_0000051: feature:3408001-3408200:1:region
SIO_000974: ecc0017f-6530-4182-a62c-1676589ceb58

position:3408001:1
position: 3408001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3408200:1
position: 3408200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ecc0017f-6530-4182-a62c-1676589ceb58
SIO_000300: 1
SIO_000628: feature:3408001-3408200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15307185..15307384
location: region:15307185-15307384:1
BFO_0000051: feature:15307185-15307384:1:region
SIO_000974: ad1c6139-b8b4-46bc-a19c-604462114438

position:15307185:1
position: 15307185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15307384:1
position: 15307384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad1c6139-b8b4-46bc-a19c-604462114438
SIO_000300: 1
SIO_000628: feature:15307185-15307384:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16616385..16616584
location: region:16616385-16616584:1
BFO_0000051: feature:16616385-16616584:1:region
SIO_000974: 64944a6a-0f9e-4c4b-bfe8-bf0f6c372ad5

position:16616385:1
position: 16616385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16616584:1
position: 16616584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64944a6a-0f9e-4c4b-bfe8-bf0f6c372ad5
SIO_000300: 1
SIO_000628: feature:16616385-16616584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28612556..28612755
location: region:28612556-28612755:1
BFO_0000051: feature:28612556-28612755:1:region
SIO_000974: d372aae7-32fc-42db-b523-2d3c2ef1e431

position:28612556:1
position: 28612556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28612755:1
position: 28612755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d372aae7-32fc-42db-b523-2d3c2ef1e431
SIO_000300: 1
SIO_000628: feature:28612556-28612755:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34746644..34746843
location: region:34746644-34746843:1
BFO_0000051: feature:34746644-34746843:1:region
SIO_000974: cfa21495-5142-4f63-bcb9-b086d02a2b2c

position:34746644:1
position: 34746644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34746843:1
position: 34746843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cfa21495-5142-4f63-bcb9-b086d02a2b2c
SIO_000300: 1
SIO_000628: feature:34746644-34746843:1:region

Pammene aurita genome assembly, chromosome: 15.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 15.
sequence version: OX352304.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 34589934
topology: linear
RO_0000086: SO_0000987
location: 1..34589934
location: region:1-34589934:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34589934:1
position: 34589934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34589934:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4286690..4286889
location: region:4286690-4286889:1
BFO_0000051: feature:4286690-4286889:1:region
SIO_000974: b48fef41-f4e2-4176-af9a-778aad63300c

position:4286690:1
position: 4286690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4286889:1
position: 4286889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b48fef41-f4e2-4176-af9a-778aad63300c
SIO_000300: 1
SIO_000628: feature:4286690-4286889:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13198517..13198716
location: region:13198517-13198716:1
BFO_0000051: feature:13198517-13198716:1:region
SIO_000974: 7e66c415-0548-4c96-904c-e1d1903d81ed

position:13198517:1
position: 13198517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13198716:1
position: 13198716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7e66c415-0548-4c96-904c-e1d1903d81ed
SIO_000300: 1
SIO_000628: feature:13198517-13198716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13407803..13408002
location: region:13407803-13408002:1
BFO_0000051: feature:13407803-13408002:1:region
SIO_000974: 58afaa11-82ad-4a46-b903-8631ec9fe658

position:13407803:1
position: 13407803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13408002:1
position: 13408002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

58afaa11-82ad-4a46-b903-8631ec9fe658
SIO_000300: 1
SIO_000628: feature:13407803-13408002:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15030003..15030202
location: region:15030003-15030202:1
BFO_0000051: feature:15030003-15030202:1:region
SIO_000974: 3c2ef5b9-d0ae-4a86-9db4-8acc56b8e7c6

position:15030003:1
position: 15030003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15030202:1
position: 15030202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c2ef5b9-d0ae-4a86-9db4-8acc56b8e7c6
SIO_000300: 1
SIO_000628: feature:15030003-15030202:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16140968..16141167
location: region:16140968-16141167:1
BFO_0000051: feature:16140968-16141167:1:region
SIO_000974: cb4b2847-6008-4e50-ab63-2b88af668277

position:16140968:1
position: 16140968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16141167:1
position: 16141167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb4b2847-6008-4e50-ab63-2b88af668277
SIO_000300: 1
SIO_000628: feature:16140968-16141167:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18000037..18000236
location: region:18000037-18000236:1
BFO_0000051: feature:18000037-18000236:1:region
SIO_000974: a022515c-b8a1-429b-9361-42646cb35c32

position:18000037:1
position: 18000037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18000236:1
position: 18000236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a022515c-b8a1-429b-9361-42646cb35c32
SIO_000300: 1
SIO_000628: feature:18000037-18000236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18057923..18058122
location: region:18057923-18058122:1
BFO_0000051: feature:18057923-18058122:1:region
SIO_000974: 339799f5-672d-4433-9e6a-a3b0d06544b2

position:18057923:1
position: 18057923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18058122:1
position: 18058122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

339799f5-672d-4433-9e6a-a3b0d06544b2
SIO_000300: 1
SIO_000628: feature:18057923-18058122:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29650323..29650522
location: region:29650323-29650522:1
BFO_0000051: feature:29650323-29650522:1:region
SIO_000974: 50260c71-06b1-4738-9b5b-ba68a225ca9b

position:29650323:1
position: 29650323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29650522:1
position: 29650522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50260c71-06b1-4738-9b5b-ba68a225ca9b
SIO_000300: 1
SIO_000628: feature:29650323-29650522:1:region

Pammene aurita genome assembly, chromosome: 16.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 16.
sequence version: OX352305.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 34481106
topology: linear
RO_0000086: SO_0000987
location: 1..34481106
location: region:1-34481106:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34481106:1
position: 34481106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34481106:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 515002..515201
location: region:515002-515201:1
BFO_0000051: feature:515002-515201:1:region
SIO_000974: 7935f1e1-a348-47a6-922e-d3429e607c15

position:515002:1
position: 515002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515201:1
position: 515201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7935f1e1-a348-47a6-922e-d3429e607c15
SIO_000300: 1
SIO_000628: feature:515002-515201:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3675011..3675210
location: region:3675011-3675210:1
BFO_0000051: feature:3675011-3675210:1:region
SIO_000974: 22244f42-dd3a-4423-a6e5-464b8e2ed3b0

position:3675011:1
position: 3675011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3675210:1
position: 3675210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22244f42-dd3a-4423-a6e5-464b8e2ed3b0
SIO_000300: 1
SIO_000628: feature:3675011-3675210:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9899903..9900102
location: region:9899903-9900102:1
BFO_0000051: feature:9899903-9900102:1:region
SIO_000974: 906a912c-53f5-4fdd-bb9e-191c67d7eb30

position:9899903:1
position: 9899903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9900102:1
position: 9900102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

906a912c-53f5-4fdd-bb9e-191c67d7eb30
SIO_000300: 1
SIO_000628: feature:9899903-9900102:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11429741..11429940
location: region:11429741-11429940:1
BFO_0000051: feature:11429741-11429940:1:region
SIO_000974: cce5f177-b025-4154-bd3f-d0a4197799b6

position:11429741:1
position: 11429741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11429940:1
position: 11429940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cce5f177-b025-4154-bd3f-d0a4197799b6
SIO_000300: 1
SIO_000628: feature:11429741-11429940:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16295941..16296140
location: region:16295941-16296140:1
BFO_0000051: feature:16295941-16296140:1:region
SIO_000974: 8696ba9e-7695-423f-92f3-15e73d3471bf

position:16295941:1
position: 16295941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16296140:1
position: 16296140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8696ba9e-7695-423f-92f3-15e73d3471bf
SIO_000300: 1
SIO_000628: feature:16295941-16296140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16332449..16332648
location: region:16332449-16332648:1
BFO_0000051: feature:16332449-16332648:1:region
SIO_000974: 7d3dda76-62b0-457c-a5e6-84aa7fb3c744

position:16332449:1
position: 16332449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16332648:1
position: 16332648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d3dda76-62b0-457c-a5e6-84aa7fb3c744
SIO_000300: 1
SIO_000628: feature:16332449-16332648:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18570699..18570898
location: region:18570699-18570898:1
BFO_0000051: feature:18570699-18570898:1:region
SIO_000974: d5d1d805-04d5-4854-bcae-18d3be3538c7

position:18570699:1
position: 18570699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18570898:1
position: 18570898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d5d1d805-04d5-4854-bcae-18d3be3538c7
SIO_000300: 1
SIO_000628: feature:18570699-18570898:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24838170..24838369
location: region:24838170-24838369:1
BFO_0000051: feature:24838170-24838369:1:region
SIO_000974: 0aa7940b-484d-4f40-9e65-54d9a636d3ca

position:24838170:1
position: 24838170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24838369:1
position: 24838369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0aa7940b-484d-4f40-9e65-54d9a636d3ca
SIO_000300: 1
SIO_000628: feature:24838170-24838369:1:region

Pammene aurita genome assembly, chromosome: 17.
type: Entry
definition: Pammene aurita genome assembly, chromosome: 17.
sequence version: OX352306.1
sequence date: 2022-10-19
sequence: sequence
division: INV
source: Pammene aurita
organism: Pammene aurita
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene.
reference: 1
comment: The assembly ilPamAuri1.1 is based on 24x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds are named by\nsynteny based\non Pammene fasciana GCA_911728535.1.

sequence
subclass of: SO_0000001
sequence length: 34371454
topology: linear
RO_0000086: SO_0000987
location: 1..34371454
location: region:1-34371454:1
RO_0002162: 1870148

1
journal: Submitted (19-OCT-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34371454:1
position: 34371454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34371454:1:source
BFO_0000050: sequence
organism: Pammene aurita
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 908251..908450
location: region:908251-908450:1
BFO_0000051: feature:908251-908450:1:region
SIO_000974: b9f8ee9d-e0b4-44b0-b6e5-e75b7c65c9d3

position:908251:1
position: 908251
reference: sequence
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position:908450:1
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SIO_000300: 1
SIO_000628: feature:908251-908450:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:1177451-1177650:1:region
SIO_000974: e8050dcc-05a7-4c5c-8f37-01f989bfffa4

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SIO_000300: 1
SIO_000628: feature:1177451-1177650:1:region

assembly_gap
type: Assembly Gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:11038044-11038243:1:region
SIO_000974: e9abef29-5a4c-48e0-87a7-decfd175d8d8

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SIO_000300: 1
SIO_000628: feature:11038044-11038243:1:region

assembly_gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:16266217-16266416:1:region
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SIO_000300: 1
SIO_000628: feature:16266217-16266416:1:region

assembly_gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:16762407-16762606:1:region
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SIO_000300: 1
SIO_000628: feature:16762407-16762606:1:region

assembly_gap
type: Assembly Gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:27111001-27111200:1
BFO_0000051: feature:27111001-27111200:1:region
SIO_000974: 642bb2d5-b27c-4362-b7dd-dd711ccbd2ff

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SIO_000300: 1
SIO_000628: feature:27111001-27111200:1:region

assembly_gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:27338276-27338475:1:region
SIO_000974: 90eb47ef-4c97-4680-a3bb-3db58e03e292

position:27338276:1
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SIO_000300: 1
SIO_000628: feature:27338276-27338475:1:region

assembly_gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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BFO_0000051: feature:30129836-30130035:1:region
SIO_000974: 5680a8ca-ddbf-4341-9d24-a9ca579af09f

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SIO_000300: 1
SIO_000628: feature:30129836-30130035:1:region

assembly_gap
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RO_0002162: 1870148
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000974: 10e1c761-6339-45c9-a6b7-323b42613794

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SIO_000300: 1
SIO_000628: feature:30845701-30845900:1:region