Coleophora flavipennella genome assembly, chromosome: 26.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 26.
sequence version: OX369278.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17412855
topology: linear
RO_0000086: SO_0000987
location: 1..17412855
location: region:1-17412855:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17412855:1
position: 17412855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17412855:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 26
mol type: genomic DNA

1100951
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1019124..1019323
location: region:1019124-1019323:1
BFO_0000051: feature:1019124-1019323:1:region
SIO_000974: cad4fd5a-9e49-4a80-aa23-c8a93c9eccec

position:1019124:1
position: 1019124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1019323:1
position: 1019323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cad4fd5a-9e49-4a80-aa23-c8a93c9eccec
SIO_000300: 1
SIO_000628: feature:1019124-1019323:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2507995..2508194
location: region:2507995-2508194:1
BFO_0000051: feature:2507995-2508194:1:region
SIO_000974: 86fa6688-216d-45f8-afd5-9a6709a53494

position:2507995:1
position: 2507995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2508194:1
position: 2508194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2507995-2508194:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4414725..4414924
location: region:4414725-4414924:1
BFO_0000051: feature:4414725-4414924:1:region
SIO_000974: 542423d2-ef71-4ac1-903f-6bfae9b37e42

position:4414725:1
position: 4414725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4414924:1
position: 4414924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

542423d2-ef71-4ac1-903f-6bfae9b37e42
SIO_000300: 1
SIO_000628: feature:4414725-4414924:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5608293..5608492
location: region:5608293-5608492:1
BFO_0000051: feature:5608293-5608492:1:region
SIO_000974: c2280038-3306-441f-af34-8ccf3df89c77

position:5608293:1
position: 5608293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5608492:1
position: 5608492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2280038-3306-441f-af34-8ccf3df89c77
SIO_000300: 1
SIO_000628: feature:5608293-5608492:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11604239..11604438
location: region:11604239-11604438:1
BFO_0000051: feature:11604239-11604438:1:region
SIO_000974: 00edf339-e669-4caf-8491-09e50905ed49

position:11604239:1
position: 11604239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11604438:1
position: 11604438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00edf339-e669-4caf-8491-09e50905ed49
SIO_000300: 1
SIO_000628: feature:11604239-11604438:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12706456..12706655
location: region:12706456-12706655:1
BFO_0000051: feature:12706456-12706655:1:region
SIO_000974: e8d33099-f366-47ab-9abe-3e1dd46f55c5

position:12706456:1
position: 12706456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12706655:1
position: 12706655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8d33099-f366-47ab-9abe-3e1dd46f55c5
SIO_000300: 1
SIO_000628: feature:12706456-12706655:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16819656..16819855
location: region:16819656-16819855:1
BFO_0000051: feature:16819656-16819855:1:region
SIO_000974: 2ec5c3b9-82ff-4104-85ba-e84b40bc1acb

position:16819656:1
position: 16819656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16819855:1
position: 16819855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2ec5c3b9-82ff-4104-85ba-e84b40bc1acb
SIO_000300: 1
SIO_000628: feature:16819656-16819855:1:region

Coleophora flavipennella genome assembly, chromosome: 27.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 27.
sequence version: OX369279.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17286930
topology: linear
RO_0000086: SO_0000987
location: 1..17286930
location: region:1-17286930:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17286930:1
position: 17286930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17286930:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1137702..1137901
location: region:1137702-1137901:1
BFO_0000051: feature:1137702-1137901:1:region
SIO_000974: 11b529f4-a143-41ed-b9e1-4d972e85e140

position:1137702:1
position: 1137702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1137901:1
position: 1137901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

11b529f4-a143-41ed-b9e1-4d972e85e140
SIO_000300: 1
SIO_000628: feature:1137702-1137901:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7580902..7581101
location: region:7580902-7581101:1
BFO_0000051: feature:7580902-7581101:1:region
SIO_000974: c9b16a99-33a9-4e2f-b5cc-93731b1c30c7

position:7580902:1
position: 7580902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7581101:1
position: 7581101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9b16a99-33a9-4e2f-b5cc-93731b1c30c7
SIO_000300: 1
SIO_000628: feature:7580902-7581101:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11712296..11712495
location: region:11712296-11712495:1
BFO_0000051: feature:11712296-11712495:1:region
SIO_000974: 63c23a6f-fce5-4a24-9b17-da455751c43e

position:11712296:1
position: 11712296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11712495:1
position: 11712495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

63c23a6f-fce5-4a24-9b17-da455751c43e
SIO_000300: 1
SIO_000628: feature:11712296-11712495:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14195311..14195510
location: region:14195311-14195510:1
BFO_0000051: feature:14195311-14195510:1:region
SIO_000974: 6fda0aa9-d931-4398-8f73-e23647b03ac4

position:14195311:1
position: 14195311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14195510:1
position: 14195510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fda0aa9-d931-4398-8f73-e23647b03ac4
SIO_000300: 1
SIO_000628: feature:14195311-14195510:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15366064..15366263
location: region:15366064-15366263:1
BFO_0000051: feature:15366064-15366263:1:region
SIO_000974: 6dfbba97-6ac5-4beb-a6e2-0ad4bdd2ecc8

position:15366064:1
position: 15366064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15366263:1
position: 15366263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15366064-15366263:1:region

Coleophora flavipennella genome assembly, chromosome: 28.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 28.
sequence version: OX369280.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17159760
topology: linear
RO_0000086: SO_0000987
location: 1..17159760
location: region:1-17159760:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17159760:1
position: 17159760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17159760:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 195370..195569
location: region:195370-195569:1
BFO_0000051: feature:195370-195569:1:region
SIO_000974: f207a464-651c-4c9d-ab41-49418f42de06

position:195370:1
position: 195370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195569:1
position: 195569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f207a464-651c-4c9d-ab41-49418f42de06
SIO_000300: 1
SIO_000628: feature:195370-195569:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1034570..1034769
location: region:1034570-1034769:1
BFO_0000051: feature:1034570-1034769:1:region
SIO_000974: 28628aa5-8e78-4b52-b7ba-ff07a0560770

position:1034570:1
position: 1034570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1034769:1
position: 1034769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

28628aa5-8e78-4b52-b7ba-ff07a0560770
SIO_000300: 1
SIO_000628: feature:1034570-1034769:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2251799..2251998
location: region:2251799-2251998:1
BFO_0000051: feature:2251799-2251998:1:region
SIO_000974: df29f307-9110-4f89-bff4-f6a309a6cfae

position:2251799:1
position: 2251799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2251998:1
position: 2251998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df29f307-9110-4f89-bff4-f6a309a6cfae
SIO_000300: 1
SIO_000628: feature:2251799-2251998:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8081999..8082198
location: region:8081999-8082198:1
BFO_0000051: feature:8081999-8082198:1:region
SIO_000974: 5d4ab557-703f-4b11-a353-68b4a0c2f2f3

position:8081999:1
position: 8081999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8082198:1
position: 8082198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8081999-8082198:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8482773..8482972
location: region:8482773-8482972:1
BFO_0000051: feature:8482773-8482972:1:region
SIO_000974: 847a5085-b825-4290-8465-e0fa9bdfc456

position:8482773:1
position: 8482773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8482972:1
position: 8482972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8482773-8482972:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10164591..10164790
location: region:10164591-10164790:1
BFO_0000051: feature:10164591-10164790:1:region
SIO_000974: af6ed4c4-ea42-4793-8e10-4af2fbd9eb16

position:10164591:1
position: 10164591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10164790:1
position: 10164790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af6ed4c4-ea42-4793-8e10-4af2fbd9eb16
SIO_000300: 1
SIO_000628: feature:10164591-10164790:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12018687..12018886
location: region:12018687-12018886:1
BFO_0000051: feature:12018687-12018886:1:region
SIO_000974: 54ad4d33-8eb9-4e3e-a541-07037556cd6e

position:12018687:1
position: 12018687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12018886:1
position: 12018886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

54ad4d33-8eb9-4e3e-a541-07037556cd6e
SIO_000300: 1
SIO_000628: feature:12018687-12018886:1:region

Coleophora flavipennella genome assembly, chromosome: 29.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 29.
sequence version: OX369281.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16846115
topology: linear
RO_0000086: SO_0000987
location: 1..16846115
location: region:1-16846115:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16846115:1
position: 16846115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16846115:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4988254..4988453
location: region:4988254-4988453:1
BFO_0000051: feature:4988254-4988453:1:region
SIO_000974: 78cecf89-f707-43f9-8e2b-5f86799bf499

position:4988254:1
position: 4988254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4988453:1
position: 4988453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4988254-4988453:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10066421..10066620
location: region:10066421-10066620:1
BFO_0000051: feature:10066421-10066620:1:region
SIO_000974: 99001d31-26d3-4a89-8cc7-71cf41428119

position:10066421:1
position: 10066421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10066620:1
position: 10066620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10066421-10066620:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10170791..10170990
location: region:10170791-10170990:1
BFO_0000051: feature:10170791-10170990:1:region
SIO_000974: 7ccf5d79-29b0-4407-872c-a56719178fca

position:10170791:1
position: 10170791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10170990:1
position: 10170990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10170791-10170990:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11957033..11957232
location: region:11957033-11957232:1
BFO_0000051: feature:11957033-11957232:1:region
SIO_000974: 8f1c1cae-2721-45aa-83cf-c1aac60c29a5

position:11957033:1
position: 11957033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11957232:1
position: 11957232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8f1c1cae-2721-45aa-83cf-c1aac60c29a5
SIO_000300: 1
SIO_000628: feature:11957033-11957232:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13981912..13982111
location: region:13981912-13982111:1
BFO_0000051: feature:13981912-13982111:1:region
SIO_000974: ceedbbda-304f-4b1d-9e10-10ab1cf40c25

position:13981912:1
position: 13981912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13982111:1
position: 13982111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceedbbda-304f-4b1d-9e10-10ab1cf40c25
SIO_000300: 1
SIO_000628: feature:13981912-13982111:1:region

Coleophora flavipennella genome assembly, chromosome: 30.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 30.
sequence version: OX369282.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16807985
topology: linear
RO_0000086: SO_0000987
location: 1..16807985
location: region:1-16807985:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16807985:1
position: 16807985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16807985:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6396001..6396200
location: region:6396001-6396200:1
BFO_0000051: feature:6396001-6396200:1:region
SIO_000974: 1d39bf9c-c9b9-44de-8a9b-f828b3f7a8c8

position:6396001:1
position: 6396001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6396200:1
position: 6396200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d39bf9c-c9b9-44de-8a9b-f828b3f7a8c8
SIO_000300: 1
SIO_000628: feature:6396001-6396200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8066812..8067011
location: region:8066812-8067011:1
BFO_0000051: feature:8066812-8067011:1:region
SIO_000974: 99a488a1-6766-4297-a92f-092a65204973

position:8066812:1
position: 8066812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8067011:1
position: 8067011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

99a488a1-6766-4297-a92f-092a65204973
SIO_000300: 1
SIO_000628: feature:8066812-8067011:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8485802..8486001
location: region:8485802-8486001:1
BFO_0000051: feature:8485802-8486001:1:region
SIO_000974: 51c40ca5-5a93-4450-ac02-90459b0a0a09

position:8485802:1
position: 8485802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8486001:1
position: 8486001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51c40ca5-5a93-4450-ac02-90459b0a0a09
SIO_000300: 1
SIO_000628: feature:8485802-8486001:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11152990..11153189
location: region:11152990-11153189:1
BFO_0000051: feature:11152990-11153189:1:region
SIO_000974: 015d9039-9319-4569-a828-f3d8dbfae4bb

position:11152990:1
position: 11152990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11153189:1
position: 11153189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

015d9039-9319-4569-a828-f3d8dbfae4bb
SIO_000300: 1
SIO_000628: feature:11152990-11153189:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16007121..16007320
location: region:16007121-16007320:1
BFO_0000051: feature:16007121-16007320:1:region
SIO_000974: 9b684a04-10d2-4734-99c0-1c40179085bf

position:16007121:1
position: 16007121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16007320:1
position: 16007320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b684a04-10d2-4734-99c0-1c40179085bf
SIO_000300: 1
SIO_000628: feature:16007121-16007320:1:region

Coleophora flavipennella genome assembly, chromosome: 31.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 31.
sequence version: OX369283.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16281019
topology: linear
RO_0000086: SO_0000987
location: 1..16281019
location: region:1-16281019:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16281019:1
position: 16281019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16281019:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 31
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 456381..456580
location: region:456381-456580:1
BFO_0000051: feature:456381-456580:1:region
SIO_000974: 9c6b1ee5-beda-4c8a-b501-a53e3986b4a6

position:456381:1
position: 456381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456580:1
position: 456580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c6b1ee5-beda-4c8a-b501-a53e3986b4a6
SIO_000300: 1
SIO_000628: feature:456381-456580:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10075198..10075397
location: region:10075198-10075397:1
BFO_0000051: feature:10075198-10075397:1:region
SIO_000974: 466691e5-e3c3-47c0-a496-e1b3d9ca8e46

position:10075198:1
position: 10075198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10075397:1
position: 10075397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

466691e5-e3c3-47c0-a496-e1b3d9ca8e46
SIO_000300: 1
SIO_000628: feature:10075198-10075397:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10688205..10688404
location: region:10688205-10688404:1
BFO_0000051: feature:10688205-10688404:1:region
SIO_000974: da425a37-e57c-4e8f-90f0-1d97dff110ea

position:10688205:1
position: 10688205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10688404:1
position: 10688404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da425a37-e57c-4e8f-90f0-1d97dff110ea
SIO_000300: 1
SIO_000628: feature:10688205-10688404:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12107006..12107205
location: region:12107006-12107205:1
BFO_0000051: feature:12107006-12107205:1:region
SIO_000974: 1fe5f106-e035-4848-9f60-2c8353d7927a

position:12107006:1
position: 12107006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12107205:1
position: 12107205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fe5f106-e035-4848-9f60-2c8353d7927a
SIO_000300: 1
SIO_000628: feature:12107006-12107205:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13215206..13215405
location: region:13215206-13215405:1
BFO_0000051: feature:13215206-13215405:1:region
SIO_000974: 7485680b-68aa-4eea-874c-f92c97ec9c1b

position:13215206:1
position: 13215206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13215405:1
position: 13215405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7485680b-68aa-4eea-874c-f92c97ec9c1b
SIO_000300: 1
SIO_000628: feature:13215206-13215405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16037838..16038037
location: region:16037838-16038037:1
BFO_0000051: feature:16037838-16038037:1:region
SIO_000974: 87f98fd0-004f-4a32-89a5-39770b158e35

position:16037838:1
position: 16037838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16038037:1
position: 16038037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

87f98fd0-004f-4a32-89a5-39770b158e35
SIO_000300: 1
SIO_000628: feature:16037838-16038037:1:region

Coleophora flavipennella genome assembly, chromosome: 32.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 32.
sequence version: OX369284.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16233869
topology: linear
RO_0000086: SO_0000987
location: 1..16233869
location: region:1-16233869:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16233869:1
position: 16233869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16233869:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 32
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7978832..7979031
location: region:7978832-7979031:1
BFO_0000051: feature:7978832-7979031:1:region
SIO_000974: 8c5dd08b-4cf4-4f2e-82fd-1993f1892d51

position:7978832:1
position: 7978832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7979031:1
position: 7979031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c5dd08b-4cf4-4f2e-82fd-1993f1892d51
SIO_000300: 1
SIO_000628: feature:7978832-7979031:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14277032..14277231
location: region:14277032-14277231:1
BFO_0000051: feature:14277032-14277231:1:region
SIO_000974: df239ead-f65c-40b2-be29-8be4f974290d

position:14277032:1
position: 14277032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14277231:1
position: 14277231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

df239ead-f65c-40b2-be29-8be4f974290d
SIO_000300: 1
SIO_000628: feature:14277032-14277231:1:region

Coleophora flavipennella genome assembly, chromosome: 33.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 33.
sequence version: OX369285.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16136528
topology: linear
RO_0000086: SO_0000987
location: 1..16136528
location: region:1-16136528:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16136528:1
position: 16136528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16136528:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 33
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1163001..1163200
location: region:1163001-1163200:1
BFO_0000051: feature:1163001-1163200:1:region
SIO_000974: ba9480b5-4ba0-4f85-a176-dbef6d22bbd4

position:1163001:1
position: 1163001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1163200:1
position: 1163200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba9480b5-4ba0-4f85-a176-dbef6d22bbd4
SIO_000300: 1
SIO_000628: feature:1163001-1163200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5676336..5676535
location: region:5676336-5676535:1
BFO_0000051: feature:5676336-5676535:1:region
SIO_000974: a9a545c4-41d7-4622-aa89-377397cc5e93

position:5676336:1
position: 5676336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5676535:1
position: 5676535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9a545c4-41d7-4622-aa89-377397cc5e93
SIO_000300: 1
SIO_000628: feature:5676336-5676535:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6692999..6693198
location: region:6692999-6693198:1
BFO_0000051: feature:6692999-6693198:1:region
SIO_000974: 3dafd2c9-a041-4ffd-84db-04597e505dc3

position:6692999:1
position: 6692999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6693198:1
position: 6693198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3dafd2c9-a041-4ffd-84db-04597e505dc3
SIO_000300: 1
SIO_000628: feature:6692999-6693198:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8615898..8616097
location: region:8615898-8616097:1
BFO_0000051: feature:8615898-8616097:1:region
SIO_000974: 2f2473e9-6503-470e-91a2-4ea51e8d7442

position:8615898:1
position: 8615898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8616097:1
position: 8616097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2f2473e9-6503-470e-91a2-4ea51e8d7442
SIO_000300: 1
SIO_000628: feature:8615898-8616097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14153053..14153252
location: region:14153053-14153252:1
BFO_0000051: feature:14153053-14153252:1:region
SIO_000974: a4bfd925-afd9-440c-b206-89edede5eef6

position:14153053:1
position: 14153053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14153252:1
position: 14153252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4bfd925-afd9-440c-b206-89edede5eef6
SIO_000300: 1
SIO_000628: feature:14153053-14153252:1:region

Coleophora flavipennella genome assembly, chromosome: 34.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 34.
sequence version: OX369286.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16052374
topology: linear
RO_0000086: SO_0000987
location: 1..16052374
location: region:1-16052374:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16052374:1
position: 16052374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16052374:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 34
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 466271..466470
location: region:466271-466470:1
BFO_0000051: feature:466271-466470:1:region
SIO_000974: 74e0eddc-b430-4312-922f-939cc5acaa5c

position:466271:1
position: 466271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466470:1
position: 466470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74e0eddc-b430-4312-922f-939cc5acaa5c
SIO_000300: 1
SIO_000628: feature:466271-466470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1672172..1672371
location: region:1672172-1672371:1
BFO_0000051: feature:1672172-1672371:1:region
SIO_000974: dd9ef819-2cbd-4fc6-a40e-4f77ebd9986d

position:1672172:1
position: 1672172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1672371:1
position: 1672371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd9ef819-2cbd-4fc6-a40e-4f77ebd9986d
SIO_000300: 1
SIO_000628: feature:1672172-1672371:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2971372..2971571
location: region:2971372-2971571:1
BFO_0000051: feature:2971372-2971571:1:region
SIO_000974: 00401fb2-ca8c-4506-939b-92495ecae846

position:2971372:1
position: 2971372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2971571:1
position: 2971571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00401fb2-ca8c-4506-939b-92495ecae846
SIO_000300: 1
SIO_000628: feature:2971372-2971571:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3416898..3417097
location: region:3416898-3417097:1
BFO_0000051: feature:3416898-3417097:1:region
SIO_000974: 34ca4c43-1b92-4ab2-8fdf-8c7960125973

position:3416898:1
position: 3416898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3417097:1
position: 3417097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34ca4c43-1b92-4ab2-8fdf-8c7960125973
SIO_000300: 1
SIO_000628: feature:3416898-3417097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4109642..4109841
location: region:4109642-4109841:1
BFO_0000051: feature:4109642-4109841:1:region
SIO_000974: 1628ed2c-bdb8-4986-8a72-f8761eeec3b6

position:4109642:1
position: 4109642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4109841:1
position: 4109841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1628ed2c-bdb8-4986-8a72-f8761eeec3b6
SIO_000300: 1
SIO_000628: feature:4109642-4109841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5355791..5355990
location: region:5355791-5355990:1
BFO_0000051: feature:5355791-5355990:1:region
SIO_000974: dd398472-dffd-44e4-bbb9-9dee5aedd20e

position:5355791:1
position: 5355791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5355990:1
position: 5355990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd398472-dffd-44e4-bbb9-9dee5aedd20e
SIO_000300: 1
SIO_000628: feature:5355791-5355990:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13057298..13057497
location: region:13057298-13057497:1
BFO_0000051: feature:13057298-13057497:1:region
SIO_000974: 1b7824ad-d87c-4d8c-906b-937912901dfc

position:13057298:1
position: 13057298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13057497:1
position: 13057497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1b7824ad-d87c-4d8c-906b-937912901dfc
SIO_000300: 1
SIO_000628: feature:13057298-13057497:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14146584..14146783
location: region:14146584-14146783:1
BFO_0000051: feature:14146584-14146783:1:region
SIO_000974: c3f410d5-c6ff-4cd8-9c92-6c6d9e1d319f

position:14146584:1
position: 14146584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14146783:1
position: 14146783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3f410d5-c6ff-4cd8-9c92-6c6d9e1d319f
SIO_000300: 1
SIO_000628: feature:14146584-14146783:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14780109..14780308
location: region:14780109-14780308:1
BFO_0000051: feature:14780109-14780308:1:region
SIO_000974: 945a905d-d71b-4d13-9cd6-735fe78308ea

position:14780109:1
position: 14780109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14780308:1
position: 14780308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

945a905d-d71b-4d13-9cd6-735fe78308ea
SIO_000300: 1
SIO_000628: feature:14780109-14780308:1:region

Coleophora flavipennella genome assembly, chromosome: 35.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 35.
sequence version: OX369287.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15572165
topology: linear
RO_0000086: SO_0000987
location: 1..15572165
location: region:1-15572165:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15572165:1
position: 15572165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15572165:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 35
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 153951..154150
location: region:153951-154150:1
BFO_0000051: feature:153951-154150:1:region
SIO_000974: cb7056af-cc04-41a9-803b-e4b7a53144cf

position:153951:1
position: 153951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154150:1
position: 154150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cb7056af-cc04-41a9-803b-e4b7a53144cf
SIO_000300: 1
SIO_000628: feature:153951-154150:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 717942..718141
location: region:717942-718141:1
BFO_0000051: feature:717942-718141:1:region
SIO_000974: 2b53427e-467b-4309-8b8b-d177828af2ad

position:717942:1
position: 717942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:718141:1
position: 718141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b53427e-467b-4309-8b8b-d177828af2ad
SIO_000300: 1
SIO_000628: feature:717942-718141:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1060969..1061168
location: region:1060969-1061168:1
BFO_0000051: feature:1060969-1061168:1:region
SIO_000974: f56f8f25-af17-4551-9904-5e0395d30f08

position:1060969:1
position: 1060969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1061168:1
position: 1061168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f56f8f25-af17-4551-9904-5e0395d30f08
SIO_000300: 1
SIO_000628: feature:1060969-1061168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2726272..2726471
location: region:2726272-2726471:1
BFO_0000051: feature:2726272-2726471:1:region
SIO_000974: 22c5fece-e8fe-40e1-a842-bfee4268c721

position:2726272:1
position: 2726272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2726471:1
position: 2726471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22c5fece-e8fe-40e1-a842-bfee4268c721
SIO_000300: 1
SIO_000628: feature:2726272-2726471:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4965540..4965739
location: region:4965540-4965739:1
BFO_0000051: feature:4965540-4965739:1:region
SIO_000974: 14b2faaf-40e8-4fdd-8427-d09e75a4682d

position:4965540:1
position: 4965540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4965739:1
position: 4965739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

14b2faaf-40e8-4fdd-8427-d09e75a4682d
SIO_000300: 1
SIO_000628: feature:4965540-4965739:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12608740..12608939
location: region:12608740-12608939:1
BFO_0000051: feature:12608740-12608939:1:region
SIO_000974: 26fa1d72-4e00-4834-8900-8d9039572435

position:12608740:1
position: 12608740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12608939:1
position: 12608939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26fa1d72-4e00-4834-8900-8d9039572435
SIO_000300: 1
SIO_000628: feature:12608740-12608939:1:region

Coleophora flavipennella genome assembly, chromosome: 36.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 36.
sequence version: OX369288.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15108170
topology: linear
RO_0000086: SO_0000987
location: 1..15108170
location: region:1-15108170:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15108170:1
position: 15108170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15108170:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 36
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1596144..1596343
location: region:1596144-1596343:1
BFO_0000051: feature:1596144-1596343:1:region
SIO_000974: 9c1ccd00-9a12-4592-9422-b0f9ec5e3129

position:1596144:1
position: 1596144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1596343:1
position: 1596343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c1ccd00-9a12-4592-9422-b0f9ec5e3129
SIO_000300: 1
SIO_000628: feature:1596144-1596343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2190310..2190509
location: region:2190310-2190509:1
BFO_0000051: feature:2190310-2190509:1:region
SIO_000974: af2e01c6-ac49-40b8-92c8-c866c8cf7a15

position:2190310:1
position: 2190310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2190509:1
position: 2190509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af2e01c6-ac49-40b8-92c8-c866c8cf7a15
SIO_000300: 1
SIO_000628: feature:2190310-2190509:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5008108..5008307
location: region:5008108-5008307:1
BFO_0000051: feature:5008108-5008307:1:region
SIO_000974: c328da42-d63b-430f-92d8-3956d760598a

position:5008108:1
position: 5008108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5008307:1
position: 5008307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c328da42-d63b-430f-92d8-3956d760598a
SIO_000300: 1
SIO_000628: feature:5008108-5008307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5348308..5348507
location: region:5348308-5348507:1
BFO_0000051: feature:5348308-5348507:1:region
SIO_000974: 486f0151-5b7d-470a-ac13-c54372eaaa8a

position:5348308:1
position: 5348308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5348507:1
position: 5348507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

486f0151-5b7d-470a-ac13-c54372eaaa8a
SIO_000300: 1
SIO_000628: feature:5348308-5348507:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7650508..7650707
location: region:7650508-7650707:1
BFO_0000051: feature:7650508-7650707:1:region
SIO_000974: 82f4c039-8f63-4cb4-ba05-4ad60f38e0a2

position:7650508:1
position: 7650508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7650707:1
position: 7650707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82f4c039-8f63-4cb4-ba05-4ad60f38e0a2
SIO_000300: 1
SIO_000628: feature:7650508-7650707:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7819172..7819371
location: region:7819172-7819371:1
BFO_0000051: feature:7819172-7819371:1:region
SIO_000974: 2ca02055-7c2e-49dd-b4a9-651902e21e55

position:7819172:1
position: 7819172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7819371:1
position: 7819371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2ca02055-7c2e-49dd-b4a9-651902e21e55
SIO_000300: 1
SIO_000628: feature:7819172-7819371:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7929056..7929255
location: region:7929056-7929255:1
BFO_0000051: feature:7929056-7929255:1:region
SIO_000974: 0eced74b-efbc-43c1-9b9d-fefa18ca2b3e

position:7929056:1
position: 7929056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7929255:1
position: 7929255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0eced74b-efbc-43c1-9b9d-fefa18ca2b3e
SIO_000300: 1
SIO_000628: feature:7929056-7929255:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8979796..8979995
location: region:8979796-8979995:1
BFO_0000051: feature:8979796-8979995:1:region
SIO_000974: b30b9447-47b9-4535-88b2-567e56349ef8

position:8979796:1
position: 8979796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8979995:1
position: 8979995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b30b9447-47b9-4535-88b2-567e56349ef8
SIO_000300: 1
SIO_000628: feature:8979796-8979995:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10797971..10798170
location: region:10797971-10798170:1
BFO_0000051: feature:10797971-10798170:1:region
SIO_000974: 92fa9353-70f1-4bef-b462-a87f98a25e77

position:10797971:1
position: 10797971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10798170:1
position: 10798170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92fa9353-70f1-4bef-b462-a87f98a25e77
SIO_000300: 1
SIO_000628: feature:10797971-10798170:1:region

Coleophora flavipennella genome assembly, chromosome: 37.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 37.
sequence version: OX369289.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14864823
topology: linear
RO_0000086: SO_0000987
location: 1..14864823
location: region:1-14864823:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14864823:1
position: 14864823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14864823:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 37
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3336286..3336485
location: region:3336286-3336485:1
BFO_0000051: feature:3336286-3336485:1:region
SIO_000974: 599e2cc0-cfaa-40c8-aae6-afcb084ad38c

position:3336286:1
position: 3336286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3336485:1
position: 3336485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

599e2cc0-cfaa-40c8-aae6-afcb084ad38c
SIO_000300: 1
SIO_000628: feature:3336286-3336485:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10358535..10358734
location: region:10358535-10358734:1
BFO_0000051: feature:10358535-10358734:1:region
SIO_000974: dab65294-6370-4164-835f-53a8f74ea425

position:10358535:1
position: 10358535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10358734:1
position: 10358734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dab65294-6370-4164-835f-53a8f74ea425
SIO_000300: 1
SIO_000628: feature:10358535-10358734:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11338921..11339120
location: region:11338921-11339120:1
BFO_0000051: feature:11338921-11339120:1:region
SIO_000974: d133c3ca-24e5-4293-965c-2720447e2aa0

position:11338921:1
position: 11338921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11339120:1
position: 11339120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d133c3ca-24e5-4293-965c-2720447e2aa0
SIO_000300: 1
SIO_000628: feature:11338921-11339120:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11365380..11365579
location: region:11365380-11365579:1
BFO_0000051: feature:11365380-11365579:1:region
SIO_000974: ba0dc491-da2b-431a-87da-56e4897f98ef

position:11365380:1
position: 11365380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11365579:1
position: 11365579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba0dc491-da2b-431a-87da-56e4897f98ef
SIO_000300: 1
SIO_000628: feature:11365380-11365579:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13760198..13760397
location: region:13760198-13760397:1
BFO_0000051: feature:13760198-13760397:1:region
SIO_000974: 923f1ba7-7e37-498c-927c-412f75096f0c

position:13760198:1
position: 13760198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13760397:1
position: 13760397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

923f1ba7-7e37-498c-927c-412f75096f0c
SIO_000300: 1
SIO_000628: feature:13760198-13760397:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13904624..13904823
location: region:13904624-13904823:1
BFO_0000051: feature:13904624-13904823:1:region
SIO_000974: e6a8ceae-1800-4d55-a333-221ce5dca1c8

position:13904624:1
position: 13904624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13904823:1
position: 13904823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6a8ceae-1800-4d55-a333-221ce5dca1c8
SIO_000300: 1
SIO_000628: feature:13904624-13904823:1:region

Coleophora flavipennella genome assembly, chromosome: 38.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 38.
sequence version: OX369290.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14853034
topology: linear
RO_0000086: SO_0000987
location: 1..14853034
location: region:1-14853034:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14853034:1
position: 14853034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14853034:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 38
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 238728..238927
location: region:238728-238927:1
BFO_0000051: feature:238728-238927:1:region
SIO_000974: 7dad9179-73d9-4aa2-9be6-09ec16655684

position:238728:1
position: 238728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238927:1
position: 238927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7dad9179-73d9-4aa2-9be6-09ec16655684
SIO_000300: 1
SIO_000628: feature:238728-238927:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1459210..1459409
location: region:1459210-1459409:1
BFO_0000051: feature:1459210-1459409:1:region
SIO_000974: 80073760-946f-4b80-86c0-f942c12c579c

position:1459210:1
position: 1459210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1459409:1
position: 1459409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80073760-946f-4b80-86c0-f942c12c579c
SIO_000300: 1
SIO_000628: feature:1459210-1459409:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5502130..5502329
location: region:5502130-5502329:1
BFO_0000051: feature:5502130-5502329:1:region
SIO_000974: 21a2660e-62e7-4d9e-b7a2-0bb78f441326

position:5502130:1
position: 5502130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5502329:1
position: 5502329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21a2660e-62e7-4d9e-b7a2-0bb78f441326
SIO_000300: 1
SIO_000628: feature:5502130-5502329:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8230330..8230529
location: region:8230330-8230529:1
BFO_0000051: feature:8230330-8230529:1:region
SIO_000974: d1bd5c2d-2755-4a07-ab0b-64ba827e08c4

position:8230330:1
position: 8230330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8230529:1
position: 8230529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d1bd5c2d-2755-4a07-ab0b-64ba827e08c4
SIO_000300: 1
SIO_000628: feature:8230330-8230529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12684878..12685077
location: region:12684878-12685077:1
BFO_0000051: feature:12684878-12685077:1:region
SIO_000974: 83190f97-2425-4f7b-9aee-e60a436ba5ac

position:12684878:1
position: 12684878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12685077:1
position: 12685077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

83190f97-2425-4f7b-9aee-e60a436ba5ac
SIO_000300: 1
SIO_000628: feature:12684878-12685077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13201325..13201524
location: region:13201325-13201524:1
BFO_0000051: feature:13201325-13201524:1:region
SIO_000974: 0176941a-6f20-4c73-afc9-2d1aeafba2c0

position:13201325:1
position: 13201325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13201524:1
position: 13201524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0176941a-6f20-4c73-afc9-2d1aeafba2c0
SIO_000300: 1
SIO_000628: feature:13201325-13201524:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14411757..14411956
location: region:14411757-14411956:1
BFO_0000051: feature:14411757-14411956:1:region
SIO_000974: 7b15ce68-a339-4723-a9eb-66f0dc8b01f5

position:14411757:1
position: 14411757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14411956:1
position: 14411956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b15ce68-a339-4723-a9eb-66f0dc8b01f5
SIO_000300: 1
SIO_000628: feature:14411757-14411956:1:region

Coleophora flavipennella genome assembly, chromosome: 39.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 39.
sequence version: OX369291.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14570563
topology: linear
RO_0000086: SO_0000987
location: 1..14570563
location: region:1-14570563:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14570563:1
position: 14570563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14570563:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 39
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 678774..678973
location: region:678774-678973:1
BFO_0000051: feature:678774-678973:1:region
SIO_000974: 55502eaf-cc06-434f-a134-6f9042bd2fd1

position:678774:1
position: 678774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:678973:1
position: 678973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55502eaf-cc06-434f-a134-6f9042bd2fd1
SIO_000300: 1
SIO_000628: feature:678774-678973:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1953974..1954173
location: region:1953974-1954173:1
BFO_0000051: feature:1953974-1954173:1:region
SIO_000974: 6478ebc9-9242-4e41-96ec-66c4502d07f8

position:1953974:1
position: 1953974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1954173:1
position: 1954173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6478ebc9-9242-4e41-96ec-66c4502d07f8
SIO_000300: 1
SIO_000628: feature:1953974-1954173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4750360..4750559
location: region:4750360-4750559:1
BFO_0000051: feature:4750360-4750559:1:region
SIO_000974: f717d505-2dd9-4a2e-979b-1115e938cb4b

position:4750360:1
position: 4750360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4750559:1
position: 4750559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f717d505-2dd9-4a2e-979b-1115e938cb4b
SIO_000300: 1
SIO_000628: feature:4750360-4750559:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9790256..9790455
location: region:9790256-9790455:1
BFO_0000051: feature:9790256-9790455:1:region
SIO_000974: 063baaaa-e4a7-47ee-b3d6-a8dac5565d22

position:9790256:1
position: 9790256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9790455:1
position: 9790455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

063baaaa-e4a7-47ee-b3d6-a8dac5565d22
SIO_000300: 1
SIO_000628: feature:9790256-9790455:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13440239..13440438
location: region:13440239-13440438:1
BFO_0000051: feature:13440239-13440438:1:region
SIO_000974: 453e9937-7fc3-435c-b864-a53c326925f1

position:13440239:1
position: 13440239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13440438:1
position: 13440438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

453e9937-7fc3-435c-b864-a53c326925f1
SIO_000300: 1
SIO_000628: feature:13440239-13440438:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14343749..14343948
location: region:14343749-14343948:1
BFO_0000051: feature:14343749-14343948:1:region
SIO_000974: b21f4643-8548-4736-90df-3a4ee4deedff

position:14343749:1
position: 14343749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14343948:1
position: 14343948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b21f4643-8548-4736-90df-3a4ee4deedff
SIO_000300: 1
SIO_000628: feature:14343749-14343948:1:region

Coleophora flavipennella genome assembly, chromosome: 40.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 40.
sequence version: OX369292.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14510420
topology: linear
RO_0000086: SO_0000987
location: 1..14510420
location: region:1-14510420:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14510420:1
position: 14510420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14510420:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 40
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 175943..176142
location: region:175943-176142:1
BFO_0000051: feature:175943-176142:1:region
SIO_000974: 40a614d9-da61-4cb6-9747-c71cb07b8206

position:175943:1
position: 175943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176142:1
position: 176142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40a614d9-da61-4cb6-9747-c71cb07b8206
SIO_000300: 1
SIO_000628: feature:175943-176142:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 900515..900714
location: region:900515-900714:1
BFO_0000051: feature:900515-900714:1:region
SIO_000974: f18ebff6-6fbf-4ee4-9848-e7d021989874

position:900515:1
position: 900515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:900714:1
position: 900714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f18ebff6-6fbf-4ee4-9848-e7d021989874
SIO_000300: 1
SIO_000628: feature:900515-900714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1801786..1801985
location: region:1801786-1801985:1
BFO_0000051: feature:1801786-1801985:1:region
SIO_000974: c9e98ba4-cc7d-4012-a270-3ee449a61589

position:1801786:1
position: 1801786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1801985:1
position: 1801985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c9e98ba4-cc7d-4012-a270-3ee449a61589
SIO_000300: 1
SIO_000628: feature:1801786-1801985:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2319552..2319751
location: region:2319552-2319751:1
BFO_0000051: feature:2319552-2319751:1:region
SIO_000974: 3877788a-e03c-4b80-9651-c53a6c36b360

position:2319552:1
position: 2319552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2319751:1
position: 2319751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3877788a-e03c-4b80-9651-c53a6c36b360
SIO_000300: 1
SIO_000628: feature:2319552-2319751:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3550216..3550415
location: region:3550216-3550415:1
BFO_0000051: feature:3550216-3550415:1:region
SIO_000974: a933d4c4-4a01-4735-ab34-1aea7dbb2dbc

position:3550216:1
position: 3550216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3550415:1
position: 3550415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a933d4c4-4a01-4735-ab34-1aea7dbb2dbc
SIO_000300: 1
SIO_000628: feature:3550216-3550415:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4643382..4643581
location: region:4643382-4643581:1
BFO_0000051: feature:4643382-4643581:1:region
SIO_000974: 775d3f81-85af-4b3b-91f3-c256db22ffe1

position:4643382:1
position: 4643382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4643581:1
position: 4643581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

775d3f81-85af-4b3b-91f3-c256db22ffe1
SIO_000300: 1
SIO_000628: feature:4643382-4643581:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6150289..6150488
location: region:6150289-6150488:1
BFO_0000051: feature:6150289-6150488:1:region
SIO_000974: 42b2d423-8ae7-435e-8138-377e9e3ddc1d

position:6150289:1
position: 6150289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6150488:1
position: 6150488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

42b2d423-8ae7-435e-8138-377e9e3ddc1d
SIO_000300: 1
SIO_000628: feature:6150289-6150488:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14032850..14033049
location: region:14032850-14033049:1
BFO_0000051: feature:14032850-14033049:1:region
SIO_000974: 26c7f9df-0d82-4d50-8d22-a72041ae81fd

position:14032850:1
position: 14032850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14033049:1
position: 14033049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26c7f9df-0d82-4d50-8d22-a72041ae81fd
SIO_000300: 1
SIO_000628: feature:14032850-14033049:1:region

Coleophora flavipennella genome assembly, chromosome: 41.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 41.
sequence version: OX369293.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14405264
topology: linear
RO_0000086: SO_0000987
location: 1..14405264
location: region:1-14405264:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14405264:1
position: 14405264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14405264:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 41
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5016001..5016200
location: region:5016001-5016200:1
BFO_0000051: feature:5016001-5016200:1:region
SIO_000974: 78692a04-f8f4-4940-80b6-28a55fefacd8

position:5016001:1
position: 5016001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5016200:1
position: 5016200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5016001-5016200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5880201..5880400
location: region:5880201-5880400:1
BFO_0000051: feature:5880201-5880400:1:region
SIO_000974: 93f38646-8b62-43ba-bfd9-b0ba0fdc5055

position:5880201:1
position: 5880201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5880400:1
position: 5880400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5880201-5880400:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6270659..6270858
location: region:6270659-6270858:1
BFO_0000051: feature:6270659-6270858:1:region
SIO_000974: e097fb02-863e-419d-be8e-a368d82cc4d0

position:6270659:1
position: 6270659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6270858:1
position: 6270858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6270659-6270858:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8386216..8386415
location: region:8386216-8386415:1
BFO_0000051: feature:8386216-8386415:1:region
SIO_000974: 4ad5bc74-24c6-49ad-8926-50907170add5

position:8386216:1
position: 8386216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8386415:1
position: 8386415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8386216-8386415:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10565956..10566155
location: region:10565956-10566155:1
BFO_0000051: feature:10565956-10566155:1:region
SIO_000974: 9a64f014-8e12-4e4f-9777-3f917db7645f

position:10565956:1
position: 10565956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10566155:1
position: 10566155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10565956-10566155:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12991510..12991709
location: region:12991510-12991709:1
BFO_0000051: feature:12991510-12991709:1:region
SIO_000974: 60036a8a-2e53-4c00-94ba-8ff646a3bcac

position:12991510:1
position: 12991510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12991709:1
position: 12991709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12991510-12991709:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13218560..13218759
location: region:13218560-13218759:1
BFO_0000051: feature:13218560-13218759:1:region
SIO_000974: b85f59eb-fcab-4b91-a61c-4d044c362479

position:13218560:1
position: 13218560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13218759:1
position: 13218759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b85f59eb-fcab-4b91-a61c-4d044c362479
SIO_000300: 1
SIO_000628: feature:13218560-13218759:1:region

Coleophora flavipennella genome assembly, chromosome: 42.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 42.
sequence version: OX369294.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14311438
topology: linear
RO_0000086: SO_0000987
location: 1..14311438
location: region:1-14311438:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14311438:1
position: 14311438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14311438:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 42
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4438259..4438458
location: region:4438259-4438458:1
BFO_0000051: feature:4438259-4438458:1:region
SIO_000974: 6ad7a704-5a96-4119-9f83-4587dc6f4988

position:4438259:1
position: 4438259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4438458:1
position: 4438458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4438259-4438458:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4610276..4610475
location: region:4610276-4610475:1
BFO_0000051: feature:4610276-4610475:1:region
SIO_000974: f568f177-5b49-41ad-8c32-6e4eaace9002

position:4610276:1
position: 4610276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4610475:1
position: 4610475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4610276-4610475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7073520..7073719
location: region:7073520-7073719:1
BFO_0000051: feature:7073520-7073719:1:region
SIO_000974: 676097d7-816e-4f7c-a6b5-7645b83567b7

position:7073520:1
position: 7073520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7073719:1
position: 7073719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7073520-7073719:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8339720..8339919
location: region:8339720-8339919:1
BFO_0000051: feature:8339720-8339919:1:region
SIO_000974: a34e14ec-f058-46c2-bf4f-0779defaf1a7

position:8339720:1
position: 8339720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8339919:1
position: 8339919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8339720-8339919:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8922910..8923109
location: region:8922910-8923109:1
BFO_0000051: feature:8922910-8923109:1:region
SIO_000974: a70f8c49-22b9-482a-843a-c769ac8b3cd7

position:8922910:1
position: 8922910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8923109:1
position: 8923109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8922910-8923109:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9280479..9280678
location: region:9280479-9280678:1
BFO_0000051: feature:9280479-9280678:1:region
SIO_000974: b605d3c2-05ca-46cc-afcb-8b73a7bbca26

position:9280479:1
position: 9280479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9280678:1
position: 9280678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b605d3c2-05ca-46cc-afcb-8b73a7bbca26
SIO_000300: 1
SIO_000628: feature:9280479-9280678:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10194613..10194812
location: region:10194613-10194812:1
BFO_0000051: feature:10194613-10194812:1:region
SIO_000974: 37ef6906-6176-4b87-919a-bbe20ea82e3a

position:10194613:1
position: 10194613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10194812:1
position: 10194812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10194613-10194812:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11123702..11123901
location: region:11123702-11123901:1
BFO_0000051: feature:11123702-11123901:1:region
SIO_000974: 9520d5b7-9acf-4626-916d-d42188181463

position:11123702:1
position: 11123702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11123901:1
position: 11123901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11123702-11123901:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12010537..12010736
location: region:12010537-12010736:1
BFO_0000051: feature:12010537-12010736:1:region
SIO_000974: 39d28c9b-ba52-42e1-86b6-c0854d9248b2

position:12010537:1
position: 12010537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12010736:1
position: 12010736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12010537-12010736:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14000663..14000862
location: region:14000663-14000862:1
BFO_0000051: feature:14000663-14000862:1:region
SIO_000974: bc8beb8d-83b1-4fb2-a08c-3a4aba889b32

position:14000663:1
position: 14000663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14000862:1
position: 14000862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:14000663-14000862:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14215837..14216036
location: region:14215837-14216036:1
BFO_0000051: feature:14215837-14216036:1:region
SIO_000974: 17a3c5b2-0887-45c1-aa6b-2ca33e06faf1

position:14215837:1
position: 14215837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14216036:1
position: 14216036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17a3c5b2-0887-45c1-aa6b-2ca33e06faf1
SIO_000300: 1
SIO_000628: feature:14215837-14216036:1:region

Coleophora flavipennella genome assembly, chromosome: 43.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 43.
sequence version: OX369295.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14262353
topology: linear
RO_0000086: SO_0000987
location: 1..14262353
location: region:1-14262353:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14262353:1
position: 14262353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14262353:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 43
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2948255..2948454
location: region:2948255-2948454:1
BFO_0000051: feature:2948255-2948454:1:region
SIO_000974: 98089da8-8bbe-4f0e-b50f-f32998925a83

position:2948255:1
position: 2948255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2948454:1
position: 2948454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

98089da8-8bbe-4f0e-b50f-f32998925a83
SIO_000300: 1
SIO_000628: feature:2948255-2948454:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6458338..6458537
location: region:6458338-6458537:1
BFO_0000051: feature:6458338-6458537:1:region
SIO_000974: 3ccc3ff4-eed6-4e6d-93ca-606e78489608

position:6458338:1
position: 6458338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6458537:1
position: 6458537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ccc3ff4-eed6-4e6d-93ca-606e78489608
SIO_000300: 1
SIO_000628: feature:6458338-6458537:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7123506..7123705
location: region:7123506-7123705:1
BFO_0000051: feature:7123506-7123705:1:region
SIO_000974: b637787c-4b1f-4402-bc16-f15986187c61

position:7123506:1
position: 7123506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7123705:1
position: 7123705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b637787c-4b1f-4402-bc16-f15986187c61
SIO_000300: 1
SIO_000628: feature:7123506-7123705:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7750059..7750258
location: region:7750059-7750258:1
BFO_0000051: feature:7750059-7750258:1:region
SIO_000974: b25d1feb-9fd8-4056-801f-56d9e8a496de

position:7750059:1
position: 7750059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7750258:1
position: 7750258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b25d1feb-9fd8-4056-801f-56d9e8a496de
SIO_000300: 1
SIO_000628: feature:7750059-7750258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13222961..13223160
location: region:13222961-13223160:1
BFO_0000051: feature:13222961-13223160:1:region
SIO_000974: d6cb3b8e-16d4-41b3-9f9e-3e173ebbabf7

position:13222961:1
position: 13222961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13223160:1
position: 13223160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d6cb3b8e-16d4-41b3-9f9e-3e173ebbabf7
SIO_000300: 1
SIO_000628: feature:13222961-13223160:1:region

Coleophora flavipennella genome assembly, chromosome: 44.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 44.
sequence version: OX369296.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13975713
topology: linear
RO_0000086: SO_0000987
location: 1..13975713
location: region:1-13975713:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13975713:1
position: 13975713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13975713:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 44
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2332534..2332733
location: region:2332534-2332733:1
BFO_0000051: feature:2332534-2332733:1:region
SIO_000974: 00b5416c-5762-4ea2-b306-ca812cade6aa

position:2332534:1
position: 2332534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2332733:1
position: 2332733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00b5416c-5762-4ea2-b306-ca812cade6aa
SIO_000300: 1
SIO_000628: feature:2332534-2332733:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3924734..3924933
location: region:3924734-3924933:1
BFO_0000051: feature:3924734-3924933:1:region
SIO_000974: dd4312e7-9666-4776-a1ff-0fed9c662536

position:3924734:1
position: 3924734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3924933:1
position: 3924933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd4312e7-9666-4776-a1ff-0fed9c662536
SIO_000300: 1
SIO_000628: feature:3924734-3924933:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13669514..13669713
location: region:13669514-13669713:1
BFO_0000051: feature:13669514-13669713:1:region
SIO_000974: c4bab86a-845f-455c-8f23-d9a84b0b3914

position:13669514:1
position: 13669514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13669713:1
position: 13669713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4bab86a-845f-455c-8f23-d9a84b0b3914
SIO_000300: 1
SIO_000628: feature:13669514-13669713:1:region

Coleophora flavipennella genome assembly, chromosome: 45.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 45.
sequence version: OX369297.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12762864
topology: linear
RO_0000086: SO_0000987
location: 1..12762864
location: region:1-12762864:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12762864:1
position: 12762864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12762864:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 45
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 199462..199661
location: region:199462-199661:1
BFO_0000051: feature:199462-199661:1:region
SIO_000974: 3e268ad0-2f44-4a07-bfa9-be9b5a0c8e32

position:199462:1
position: 199462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199661:1
position: 199661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e268ad0-2f44-4a07-bfa9-be9b5a0c8e32
SIO_000300: 1
SIO_000628: feature:199462-199661:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5654898..5655097
location: region:5654898-5655097:1
BFO_0000051: feature:5654898-5655097:1:region
SIO_000974: 783081ee-36cf-41a3-81df-e6bb0d7ff9b6

position:5654898:1
position: 5654898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5655097:1
position: 5655097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

783081ee-36cf-41a3-81df-e6bb0d7ff9b6
SIO_000300: 1
SIO_000628: feature:5654898-5655097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6280010..6280209
location: region:6280010-6280209:1
BFO_0000051: feature:6280010-6280209:1:region
SIO_000974: 28577941-7817-43da-9065-45d8ed9ef199

position:6280010:1
position: 6280010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6280209:1
position: 6280209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

28577941-7817-43da-9065-45d8ed9ef199
SIO_000300: 1
SIO_000628: feature:6280010-6280209:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9330784..9330983
location: region:9330784-9330983:1
BFO_0000051: feature:9330784-9330983:1:region
SIO_000974: 9f23e090-095c-45e6-a565-99babf8ebe2a

position:9330784:1
position: 9330784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9330983:1
position: 9330983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f23e090-095c-45e6-a565-99babf8ebe2a
SIO_000300: 1
SIO_000628: feature:9330784-9330983:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12306623..12306822
location: region:12306623-12306822:1
BFO_0000051: feature:12306623-12306822:1:region
SIO_000974: a8e6df92-5ef2-4a6d-adc6-e54ebd8c2912

position:12306623:1
position: 12306623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12306822:1
position: 12306822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8e6df92-5ef2-4a6d-adc6-e54ebd8c2912
SIO_000300: 1
SIO_000628: feature:12306623-12306822:1:region

Coleophora flavipennella genome assembly, chromosome: 46.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 46.
sequence version: OX369298.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12664401
topology: linear
RO_0000086: SO_0000987
location: 1..12664401
location: region:1-12664401:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12664401:1
position: 12664401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12664401:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 46
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2316928..2317127
location: region:2316928-2317127:1
BFO_0000051: feature:2316928-2317127:1:region
SIO_000974: bb8f291f-75fa-48f3-abf2-41038d80a2dd

position:2316928:1
position: 2316928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2317127:1
position: 2317127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb8f291f-75fa-48f3-abf2-41038d80a2dd
SIO_000300: 1
SIO_000628: feature:2316928-2317127:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11476901..11477100
location: region:11476901-11477100:1
BFO_0000051: feature:11476901-11477100:1:region
SIO_000974: 6bcaf591-5e8f-4f5f-b65a-0694cbc6a4a2

position:11476901:1
position: 11476901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11477100:1
position: 11477100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bcaf591-5e8f-4f5f-b65a-0694cbc6a4a2
SIO_000300: 1
SIO_000628: feature:11476901-11477100:1:region

Coleophora flavipennella genome assembly, chromosome: 47.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 47.
sequence version: OX369299.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12630750
topology: linear
RO_0000086: SO_0000987
location: 1..12630750
location: region:1-12630750:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12630750:1
position: 12630750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12630750:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 47
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 570306..570505
location: region:570306-570505:1
BFO_0000051: feature:570306-570505:1:region
SIO_000974: 2d1941a7-3519-4bef-8095-9a5e1627f831

position:570306:1
position: 570306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570505:1
position: 570505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d1941a7-3519-4bef-8095-9a5e1627f831
SIO_000300: 1
SIO_000628: feature:570306-570505:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1315506..1315705
location: region:1315506-1315705:1
BFO_0000051: feature:1315506-1315705:1:region
SIO_000974: dd05c0f8-c8b4-4b99-89d1-a5e19fc11225

position:1315506:1
position: 1315506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1315705:1
position: 1315705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd05c0f8-c8b4-4b99-89d1-a5e19fc11225
SIO_000300: 1
SIO_000628: feature:1315506-1315705:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2797802..2798001
location: region:2797802-2798001:1
BFO_0000051: feature:2797802-2798001:1:region
SIO_000974: 5cf9a48d-5543-42d3-8409-aa02d510b6b4

position:2797802:1
position: 2797802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2798001:1
position: 2798001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5cf9a48d-5543-42d3-8409-aa02d510b6b4
SIO_000300: 1
SIO_000628: feature:2797802-2798001:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3104140..3104339
location: region:3104140-3104339:1
BFO_0000051: feature:3104140-3104339:1:region
SIO_000974: 9224ffe1-1937-4bbe-977e-d0ec5d530ef8

position:3104140:1
position: 3104140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3104339:1
position: 3104339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3104140-3104339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4531643..4531842
location: region:4531643-4531842:1
BFO_0000051: feature:4531643-4531842:1:region
SIO_000974: 4095cc44-05b6-4efd-9aed-a24c38495dec

position:4531643:1
position: 4531643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4531842:1
position: 4531842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4095cc44-05b6-4efd-9aed-a24c38495dec
SIO_000300: 1
SIO_000628: feature:4531643-4531842:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7006236..7006435
location: region:7006236-7006435:1
BFO_0000051: feature:7006236-7006435:1:region
SIO_000974: 3b435f09-f945-4b71-be0d-c003f88032a3

position:7006236:1
position: 7006236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7006435:1
position: 7006435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b435f09-f945-4b71-be0d-c003f88032a3
SIO_000300: 1
SIO_000628: feature:7006236-7006435:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8425351..8425550
location: region:8425351-8425550:1
BFO_0000051: feature:8425351-8425550:1:region
SIO_000974: 9febb0b2-eecf-4f23-9d64-3e88e0bb0d4d

position:8425351:1
position: 8425351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8425550:1
position: 8425550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9febb0b2-eecf-4f23-9d64-3e88e0bb0d4d
SIO_000300: 1
SIO_000628: feature:8425351-8425550:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10138551..10138750
location: region:10138551-10138750:1
BFO_0000051: feature:10138551-10138750:1:region
SIO_000974: bf191d7e-7ba4-47f4-8fd6-0e99c5385d4a

position:10138551:1
position: 10138551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10138750:1
position: 10138750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10138551-10138750:1:region

Coleophora flavipennella genome assembly, chromosome: 48.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 48.
sequence version: OX369300.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12563592
topology: linear
RO_0000086: SO_0000987
location: 1..12563592
location: region:1-12563592:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12563592:1
position: 12563592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12563592:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 48
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 511001..511200
location: region:511001-511200:1
BFO_0000051: feature:511001-511200:1:region
SIO_000974: adaf9a8d-885d-4ab5-93b7-31057b5843e4

position:511001:1
position: 511001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511200:1
position: 511200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

adaf9a8d-885d-4ab5-93b7-31057b5843e4
SIO_000300: 1
SIO_000628: feature:511001-511200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 644557..644756
location: region:644557-644756:1
BFO_0000051: feature:644557-644756:1:region
SIO_000974: b2d4943e-5a7b-4e53-ac8f-22d078b7a95c

position:644557:1
position: 644557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:644756:1
position: 644756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b2d4943e-5a7b-4e53-ac8f-22d078b7a95c
SIO_000300: 1
SIO_000628: feature:644557-644756:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2669162..2669361
location: region:2669162-2669361:1
BFO_0000051: feature:2669162-2669361:1:region
SIO_000974: e19bd5ff-56fc-40d5-9ad3-f337b2c9d898

position:2669162:1
position: 2669162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2669361:1
position: 2669361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e19bd5ff-56fc-40d5-9ad3-f337b2c9d898
SIO_000300: 1
SIO_000628: feature:2669162-2669361:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3803805..3804004
location: region:3803805-3804004:1
BFO_0000051: feature:3803805-3804004:1:region
SIO_000974: 9f135476-b907-40b3-81b7-8c2d80c76023

position:3803805:1
position: 3803805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3804004:1
position: 3804004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f135476-b907-40b3-81b7-8c2d80c76023
SIO_000300: 1
SIO_000628: feature:3803805-3804004:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5559162..5559361
location: region:5559162-5559361:1
BFO_0000051: feature:5559162-5559361:1:region
SIO_000974: 4b48ea5a-0f3c-4d3d-8237-5263d12c5bb1

position:5559162:1
position: 5559162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5559361:1
position: 5559361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b48ea5a-0f3c-4d3d-8237-5263d12c5bb1
SIO_000300: 1
SIO_000628: feature:5559162-5559361:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7356508..7356707
location: region:7356508-7356707:1
BFO_0000051: feature:7356508-7356707:1:region
SIO_000974: 59f86a50-f846-4642-8b80-cc0e99acbc67

position:7356508:1
position: 7356508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7356707:1
position: 7356707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59f86a50-f846-4642-8b80-cc0e99acbc67
SIO_000300: 1
SIO_000628: feature:7356508-7356707:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8552155..8552354
location: region:8552155-8552354:1
BFO_0000051: feature:8552155-8552354:1:region
SIO_000974: a6142a49-e5ce-4faf-99a7-34e9486f0cb1

position:8552155:1
position: 8552155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8552354:1
position: 8552354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a6142a49-e5ce-4faf-99a7-34e9486f0cb1
SIO_000300: 1
SIO_000628: feature:8552155-8552354:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9044212..9044411
location: region:9044212-9044411:1
BFO_0000051: feature:9044212-9044411:1:region
SIO_000974: 581cdf0b-fb3e-43e3-9dc4-828e17b2f727

position:9044212:1
position: 9044212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9044411:1
position: 9044411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

581cdf0b-fb3e-43e3-9dc4-828e17b2f727
SIO_000300: 1
SIO_000628: feature:9044212-9044411:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9283666..9283865
location: region:9283666-9283865:1
BFO_0000051: feature:9283666-9283865:1:region
SIO_000974: d244210b-d3d7-40d6-9ba8-3cd0b0d1fdc3

position:9283666:1
position: 9283666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9283865:1
position: 9283865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d244210b-d3d7-40d6-9ba8-3cd0b0d1fdc3
SIO_000300: 1
SIO_000628: feature:9283666-9283865:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12385443..12385642
location: region:12385443-12385642:1
BFO_0000051: feature:12385443-12385642:1:region
SIO_000974: abbdd34c-6aa9-4fc4-8b30-2323bffc75d9

position:12385443:1
position: 12385443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12385642:1
position: 12385642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

abbdd34c-6aa9-4fc4-8b30-2323bffc75d9
SIO_000300: 1
SIO_000628: feature:12385443-12385642:1:region

Coleophora flavipennella genome assembly, chromosome: 49.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 49.
sequence version: OX369301.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12400742
topology: linear
RO_0000086: SO_0000987
location: 1..12400742
location: region:1-12400742:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12400742:1
position: 12400742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12400742:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 49
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 211959..212158
location: region:211959-212158:1
BFO_0000051: feature:211959-212158:1:region
SIO_000974: 0b530b46-4777-4216-8bc5-6493dbb2f3eb

position:211959:1
position: 211959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212158:1
position: 212158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0b530b46-4777-4216-8bc5-6493dbb2f3eb
SIO_000300: 1
SIO_000628: feature:211959-212158:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3143387..3143586
location: region:3143387-3143586:1
BFO_0000051: feature:3143387-3143586:1:region
SIO_000974: 6b6bc05d-42ca-4aa3-9192-85c71696cda5

position:3143387:1
position: 3143387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3143586:1
position: 3143586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b6bc05d-42ca-4aa3-9192-85c71696cda5
SIO_000300: 1
SIO_000628: feature:3143387-3143586:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3550013..3550212
location: region:3550013-3550212:1
BFO_0000051: feature:3550013-3550212:1:region
SIO_000974: 2abd9a23-d5cc-41ce-88ad-1e7eba5e4bd0

position:3550013:1
position: 3550013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3550212:1
position: 3550212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2abd9a23-d5cc-41ce-88ad-1e7eba5e4bd0
SIO_000300: 1
SIO_000628: feature:3550013-3550212:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4479213..4479412
location: region:4479213-4479412:1
BFO_0000051: feature:4479213-4479412:1:region
SIO_000974: 68352a24-5d91-4af3-9e3d-14028abb1423

position:4479213:1
position: 4479213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4479412:1
position: 4479412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

68352a24-5d91-4af3-9e3d-14028abb1423
SIO_000300: 1
SIO_000628: feature:4479213-4479412:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9103570..9103769
location: region:9103570-9103769:1
BFO_0000051: feature:9103570-9103769:1:region
SIO_000974: 4e9a5f41-bf46-40f9-9c2a-0e6d7429e7d0

position:9103570:1
position: 9103570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9103769:1
position: 9103769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e9a5f41-bf46-40f9-9c2a-0e6d7429e7d0
SIO_000300: 1
SIO_000628: feature:9103570-9103769:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11564816..11565015
location: region:11564816-11565015:1
BFO_0000051: feature:11564816-11565015:1:region
SIO_000974: 569b0265-97f1-4adf-b15c-84ebe7ddf6e3

position:11564816:1
position: 11564816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11565015:1
position: 11565015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

569b0265-97f1-4adf-b15c-84ebe7ddf6e3
SIO_000300: 1
SIO_000628: feature:11564816-11565015:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11699056..11699255
location: region:11699056-11699255:1
BFO_0000051: feature:11699056-11699255:1:region
SIO_000974: 41ceb500-da4e-47f2-8916-59c12f92ed56

position:11699056:1
position: 11699056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11699255:1
position: 11699255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41ceb500-da4e-47f2-8916-59c12f92ed56
SIO_000300: 1
SIO_000628: feature:11699056-11699255:1:region

Coleophora flavipennella genome assembly, chromosome: 50.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 50.
sequence version: OX369302.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12385409
topology: linear
RO_0000086: SO_0000987
location: 1..12385409
location: region:1-12385409:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12385409:1
position: 12385409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12385409:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 50
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1970001..1970200
location: region:1970001-1970200:1
BFO_0000051: feature:1970001-1970200:1:region
SIO_000974: a5d78726-b2c4-411a-96dc-1fdf15908cc6

position:1970001:1
position: 1970001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1970200:1
position: 1970200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5d78726-b2c4-411a-96dc-1fdf15908cc6
SIO_000300: 1
SIO_000628: feature:1970001-1970200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2952654..2952853
location: region:2952654-2952853:1
BFO_0000051: feature:2952654-2952853:1:region
SIO_000974: f69dfdb6-fead-4d2f-bf4c-5dbc545bea7d

position:2952654:1
position: 2952654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2952853:1
position: 2952853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f69dfdb6-fead-4d2f-bf4c-5dbc545bea7d
SIO_000300: 1
SIO_000628: feature:2952654-2952853:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4035674..4035873
location: region:4035674-4035873:1
BFO_0000051: feature:4035674-4035873:1:region
SIO_000974: f6f7c7ef-3e75-43a3-9ecb-ac5a87b357a2

position:4035674:1
position: 4035674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4035873:1
position: 4035873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6f7c7ef-3e75-43a3-9ecb-ac5a87b357a2
SIO_000300: 1
SIO_000628: feature:4035674-4035873:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4411874..4412073
location: region:4411874-4412073:1
BFO_0000051: feature:4411874-4412073:1:region
SIO_000974: dea93028-333d-48d5-a4b2-737a7ed4da73

position:4411874:1
position: 4411874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4412073:1
position: 4412073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dea93028-333d-48d5-a4b2-737a7ed4da73
SIO_000300: 1
SIO_000628: feature:4411874-4412073:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5150263..5150462
location: region:5150263-5150462:1
BFO_0000051: feature:5150263-5150462:1:region
SIO_000974: fcb10ea5-0a78-4428-87af-a2abc9031079

position:5150263:1
position: 5150263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5150462:1
position: 5150462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fcb10ea5-0a78-4428-87af-a2abc9031079
SIO_000300: 1
SIO_000628: feature:5150263-5150462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8746463..8746662
location: region:8746463-8746662:1
BFO_0000051: feature:8746463-8746662:1:region
SIO_000974: 3593dc53-af73-4466-9428-c8034040e310

position:8746463:1
position: 8746463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8746662:1
position: 8746662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3593dc53-af73-4466-9428-c8034040e310
SIO_000300: 1
SIO_000628: feature:8746463-8746662:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9445859..9446058
location: region:9445859-9446058:1
BFO_0000051: feature:9445859-9446058:1:region
SIO_000974: 0a538ac7-f672-4271-8a3a-e3674ca16e72

position:9445859:1
position: 9445859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9446058:1
position: 9446058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a538ac7-f672-4271-8a3a-e3674ca16e72
SIO_000300: 1
SIO_000628: feature:9445859-9446058:1:region

Coleophora flavipennella genome assembly, chromosome: 51.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 51.
sequence version: OX369303.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12354810
topology: linear
RO_0000086: SO_0000987
location: 1..12354810
location: region:1-12354810:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12354810:1
position: 12354810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12354810:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 51
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7311633..7311832
location: region:7311633-7311832:1
BFO_0000051: feature:7311633-7311832:1:region
SIO_000974: 7588b5ea-1f53-4e70-9abd-2bd066e3a682

position:7311633:1
position: 7311633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7311832:1
position: 7311832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7588b5ea-1f53-4e70-9abd-2bd066e3a682
SIO_000300: 1
SIO_000628: feature:7311633-7311832:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8382725..8382924
location: region:8382725-8382924:1
BFO_0000051: feature:8382725-8382924:1:region
SIO_000974: 4b8fddd9-555a-41fe-abc4-fa4f6cf26bee

position:8382725:1
position: 8382725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8382924:1
position: 8382924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b8fddd9-555a-41fe-abc4-fa4f6cf26bee
SIO_000300: 1
SIO_000628: feature:8382725-8382924:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8643105..8643304
location: region:8643105-8643304:1
BFO_0000051: feature:8643105-8643304:1:region
SIO_000974: 9243cf65-f379-4d23-9834-87217c59182f

position:8643105:1
position: 8643105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8643304:1
position: 8643304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9243cf65-f379-4d23-9834-87217c59182f
SIO_000300: 1
SIO_000628: feature:8643105-8643304:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8670969..8671168
location: region:8670969-8671168:1
BFO_0000051: feature:8670969-8671168:1:region
SIO_000974: caab22aa-b0b4-44fe-93b8-5824b35458a1

position:8670969:1
position: 8670969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8671168:1
position: 8671168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

caab22aa-b0b4-44fe-93b8-5824b35458a1
SIO_000300: 1
SIO_000628: feature:8670969-8671168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11938500..11938699
location: region:11938500-11938699:1
BFO_0000051: feature:11938500-11938699:1:region
SIO_000974: b89a03d9-a3af-4f9a-8bec-aa5900222083

position:11938500:1
position: 11938500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11938699:1
position: 11938699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b89a03d9-a3af-4f9a-8bec-aa5900222083
SIO_000300: 1
SIO_000628: feature:11938500-11938699:1:region

Coleophora flavipennella genome assembly, chromosome: 52.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 52.
sequence version: OX369304.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12040507
topology: linear
RO_0000086: SO_0000987
location: 1..12040507
location: region:1-12040507:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12040507:1
position: 12040507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12040507:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 52
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5422108..5422307
location: region:5422108-5422307:1
BFO_0000051: feature:5422108-5422307:1:region
SIO_000974: 5703408d-6580-4c23-83f9-a5061103c6dd

position:5422108:1
position: 5422108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5422307:1
position: 5422307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5703408d-6580-4c23-83f9-a5061103c6dd
SIO_000300: 1
SIO_000628: feature:5422108-5422307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6910308..6910507
location: region:6910308-6910507:1
BFO_0000051: feature:6910308-6910507:1:region
SIO_000974: b0c83596-8894-4d01-b6a5-8ca9fa378a66

position:6910308:1
position: 6910308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6910507:1
position: 6910507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6910308-6910507:1:region

Coleophora flavipennella genome assembly, chromosome: 53.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 53.
sequence version: OX369305.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11972969
topology: linear
RO_0000086: SO_0000987
location: 1..11972969
location: region:1-11972969:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11972969:1
position: 11972969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11972969:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 53
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 627832..628031
location: region:627832-628031:1
BFO_0000051: feature:627832-628031:1:region
SIO_000974: 779b54c3-487d-4e6e-9164-ddafbd7b23fd

position:627832:1
position: 627832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:628031:1
position: 628031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:627832-628031:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1115616..1115815
location: region:1115616-1115815:1
BFO_0000051: feature:1115616-1115815:1:region
SIO_000974: aca3176d-4b8a-4c69-859e-e0d453556dd4

position:1115616:1
position: 1115616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1115815:1
position: 1115815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1115616-1115815:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3206351..3206550
location: region:3206351-3206550:1
BFO_0000051: feature:3206351-3206550:1:region
SIO_000974: 099a3900-a035-4cce-9fd8-5e12359d3f30

position:3206351:1
position: 3206351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3206550:1
position: 3206550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3206351-3206550:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7587551..7587750
location: region:7587551-7587750:1
BFO_0000051: feature:7587551-7587750:1:region
SIO_000974: 71364448-cbfe-4468-8137-72aaa7766716

position:7587551:1
position: 7587551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7587750:1
position: 7587750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7587551-7587750:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7654124..7654323
location: region:7654124-7654323:1
BFO_0000051: feature:7654124-7654323:1:region
SIO_000974: e2840c9d-1a5a-4b91-8ea7-420ca6e3fd25

position:7654124:1
position: 7654124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7654323:1
position: 7654323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7654124-7654323:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8554369..8554568
location: region:8554369-8554568:1
BFO_0000051: feature:8554369-8554568:1:region
SIO_000974: bf545f3c-ce6f-476c-a6fc-cb7aa80756d7

position:8554369:1
position: 8554369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8554568:1
position: 8554568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8554369-8554568:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11649071..11649270
location: region:11649071-11649270:1
BFO_0000051: feature:11649071-11649270:1:region
SIO_000974: b15aa21a-a407-440e-aa8e-a83cd656a3bf

position:11649071:1
position: 11649071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11649270:1
position: 11649270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11649071-11649270:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11762478..11762677
location: region:11762478-11762677:1
BFO_0000051: feature:11762478-11762677:1:region
SIO_000974: bd141865-7b13-4020-aaa9-a2b36be21185

position:11762478:1
position: 11762478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11762677:1
position: 11762677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd141865-7b13-4020-aaa9-a2b36be21185
SIO_000300: 1
SIO_000628: feature:11762478-11762677:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11897366..11897565
location: region:11897366-11897565:1
BFO_0000051: feature:11897366-11897565:1:region
SIO_000974: faca8bbc-b62f-42fb-b144-fe1b41007be6

position:11897366:1
position: 11897366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11897565:1
position: 11897565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

faca8bbc-b62f-42fb-b144-fe1b41007be6
SIO_000300: 1
SIO_000628: feature:11897366-11897565:1:region

Coleophora flavipennella genome assembly, chromosome: 54.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 54.
sequence version: OX369306.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11837605
topology: linear
RO_0000086: SO_0000987
location: 1..11837605
location: region:1-11837605:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11837605:1
position: 11837605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11837605:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 54
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1008801..1009000
location: region:1008801-1009000:1
BFO_0000051: feature:1008801-1009000:1:region
SIO_000974: f94e4e21-1bc9-4725-a808-beb67ffcd290

position:1008801:1
position: 1008801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1009000:1
position: 1009000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f94e4e21-1bc9-4725-a808-beb67ffcd290
SIO_000300: 1
SIO_000628: feature:1008801-1009000:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3087147..3087346
location: region:3087147-3087346:1
BFO_0000051: feature:3087147-3087346:1:region
SIO_000974: 67883e7a-c9f4-44e0-bca4-295dd7cbd28e

position:3087147:1
position: 3087147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3087346:1
position: 3087346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

67883e7a-c9f4-44e0-bca4-295dd7cbd28e
SIO_000300: 1
SIO_000628: feature:3087147-3087346:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3212116..3212315
location: region:3212116-3212315:1
BFO_0000051: feature:3212116-3212315:1:region
SIO_000974: 6679c4ce-e1d1-47bc-a35e-785520baf0f7

position:3212116:1
position: 3212116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3212315:1
position: 3212315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6679c4ce-e1d1-47bc-a35e-785520baf0f7
SIO_000300: 1
SIO_000628: feature:3212116-3212315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7632054..7632253
location: region:7632054-7632253:1
BFO_0000051: feature:7632054-7632253:1:region
SIO_000974: e866b01c-ac79-47e2-b1e9-c1055cca1a51

position:7632054:1
position: 7632054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7632253:1
position: 7632253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e866b01c-ac79-47e2-b1e9-c1055cca1a51
SIO_000300: 1
SIO_000628: feature:7632054-7632253:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9368254..9368453
location: region:9368254-9368453:1
BFO_0000051: feature:9368254-9368453:1:region
SIO_000974: 3d0b6690-ca05-4fbd-97a0-bd1855ce2ea9

position:9368254:1
position: 9368254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9368453:1
position: 9368453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d0b6690-ca05-4fbd-97a0-bd1855ce2ea9
SIO_000300: 1
SIO_000628: feature:9368254-9368453:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9699454..9699653
location: region:9699454-9699653:1
BFO_0000051: feature:9699454-9699653:1:region
SIO_000974: 510139ad-a177-4b4c-8952-e8a526b5a1c9

position:9699454:1
position: 9699454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9699653:1
position: 9699653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

510139ad-a177-4b4c-8952-e8a526b5a1c9
SIO_000300: 1
SIO_000628: feature:9699454-9699653:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11519139..11519338
location: region:11519139-11519338:1
BFO_0000051: feature:11519139-11519338:1:region
SIO_000974: a47047e1-4fa1-4de8-b904-14cb83acf969

position:11519139:1
position: 11519139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11519338:1
position: 11519338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a47047e1-4fa1-4de8-b904-14cb83acf969
SIO_000300: 1
SIO_000628: feature:11519139-11519338:1:region

Coleophora flavipennella genome assembly, chromosome: 55.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: 55.
sequence version: OX369307.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11197649
topology: linear
RO_0000086: SO_0000987
location: 1..11197649
location: region:1-11197649:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11197649:1
position: 11197649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11197649:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: 55
mol type: genomic DNA

Coleophora flavipennella genome assembly, chromosome: Z.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: Z.
sequence version: OX369308.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 57400957
topology: linear
RO_0000086: SO_0000987
location: 1..57400957
location: region:1-57400957:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57400957:1
position: 57400957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-57400957:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: Z
mol type: genomic DNA

assembly_gap
type: Assembly Gap
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RO_0002162: 1100951
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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gap type: unknown
BFO_0000050: sequence
location: 34169230..34169429
location: region:34169230-34169429:1
BFO_0000051: feature:34169230-34169429:1:region
SIO_000974: cfe9aaf4-02ca-4d3b-bb01-6db05bbcd687

position:34169230:1
position: 34169230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34169429:1
position: 34169429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cfe9aaf4-02ca-4d3b-bb01-6db05bbcd687
SIO_000300: 1
SIO_000628: feature:34169230-34169429:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35445252..35445451
location: region:35445252-35445451:1
BFO_0000051: feature:35445252-35445451:1:region
SIO_000974: 2a2d812f-ac8f-4358-a5a6-58b58da60d42

position:35445252:1
position: 35445252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35445451:1
position: 35445451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a2d812f-ac8f-4358-a5a6-58b58da60d42
SIO_000300: 1
SIO_000628: feature:35445252-35445451:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38816315..38816514
location: region:38816315-38816514:1
BFO_0000051: feature:38816315-38816514:1:region
SIO_000974: 7366c0ae-c1c6-4608-ae6e-f63f03b19be6

position:38816315:1
position: 38816315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38816514:1
position: 38816514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7366c0ae-c1c6-4608-ae6e-f63f03b19be6
SIO_000300: 1
SIO_000628: feature:38816315-38816514:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39333985..39334184
location: region:39333985-39334184:1
BFO_0000051: feature:39333985-39334184:1:region
SIO_000974: b53d4166-3172-42a3-bc9d-4088c0ba18a4

position:39333985:1
position: 39333985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39334184:1
position: 39334184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b53d4166-3172-42a3-bc9d-4088c0ba18a4
SIO_000300: 1
SIO_000628: feature:39333985-39334184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39504203..39504402
location: region:39504203-39504402:1
BFO_0000051: feature:39504203-39504402:1:region
SIO_000974: 4b95e219-04c5-4e9b-a126-d83b5b2ce9bd

position:39504203:1
position: 39504203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39504402:1
position: 39504402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b95e219-04c5-4e9b-a126-d83b5b2ce9bd
SIO_000300: 1
SIO_000628: feature:39504203-39504402:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41362599..41362798
location: region:41362599-41362798:1
BFO_0000051: feature:41362599-41362798:1:region
SIO_000974: 301de0ae-84b6-4a1c-ba97-993da2dcf9e7

position:41362599:1
position: 41362599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41362798:1
position: 41362798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

301de0ae-84b6-4a1c-ba97-993da2dcf9e7
SIO_000300: 1
SIO_000628: feature:41362599-41362798:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45396791..45396990
location: region:45396791-45396990:1
BFO_0000051: feature:45396791-45396990:1:region
SIO_000974: 4c75a7aa-6d75-4a4b-9cb4-4d1a1a695d34

position:45396791:1
position: 45396791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45396990:1
position: 45396990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c75a7aa-6d75-4a4b-9cb4-4d1a1a695d34
SIO_000300: 1
SIO_000628: feature:45396791-45396990:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47017236..47017435
location: region:47017236-47017435:1
BFO_0000051: feature:47017236-47017435:1:region
SIO_000974: 0cae64e4-a0fc-4584-8a0c-7d8dbbb36f69

position:47017236:1
position: 47017236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47017435:1
position: 47017435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0cae64e4-a0fc-4584-8a0c-7d8dbbb36f69
SIO_000300: 1
SIO_000628: feature:47017236-47017435:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49063018..49063217
location: region:49063018-49063217:1
BFO_0000051: feature:49063018-49063217:1:region
SIO_000974: e6689ede-5549-4085-b96c-ff493884953f

position:49063018:1
position: 49063018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49063217:1
position: 49063217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6689ede-5549-4085-b96c-ff493884953f
SIO_000300: 1
SIO_000628: feature:49063018-49063217:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49414258..49414457
location: region:49414258-49414457:1
BFO_0000051: feature:49414258-49414457:1:region
SIO_000974: ee20c9aa-5dfc-4e52-a9da-efc8e9835635

position:49414258:1
position: 49414258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49414457:1
position: 49414457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee20c9aa-5dfc-4e52-a9da-efc8e9835635
SIO_000300: 1
SIO_000628: feature:49414258-49414457:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49783769..49783968
location: region:49783769-49783968:1
BFO_0000051: feature:49783769-49783968:1:region
SIO_000974: b034f76c-be59-4608-acd7-5bacbbcdfe10

position:49783769:1
position: 49783769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49783968:1
position: 49783968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b034f76c-be59-4608-acd7-5bacbbcdfe10
SIO_000300: 1
SIO_000628: feature:49783769-49783968:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50473299..50473498
location: region:50473299-50473498:1
BFO_0000051: feature:50473299-50473498:1:region
SIO_000974: a739f321-73ad-4457-87ca-1b80cd030cbb

position:50473299:1
position: 50473299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50473498:1
position: 50473498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a739f321-73ad-4457-87ca-1b80cd030cbb
SIO_000300: 1
SIO_000628: feature:50473299-50473498:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52506499..52506698
location: region:52506499-52506698:1
BFO_0000051: feature:52506499-52506698:1:region
SIO_000974: 90b22fcf-0faa-4920-960e-9474239da54b

position:52506499:1
position: 52506499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52506698:1
position: 52506698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

90b22fcf-0faa-4920-960e-9474239da54b
SIO_000300: 1
SIO_000628: feature:52506499-52506698:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54492699..54492898
location: region:54492699-54492898:1
BFO_0000051: feature:54492699-54492898:1:region
SIO_000974: e3b56bb0-1ee8-477f-b715-617e5c6e5b56

position:54492699:1
position: 54492699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54492898:1
position: 54492898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e3b56bb0-1ee8-477f-b715-617e5c6e5b56
SIO_000300: 1
SIO_000628: feature:54492699-54492898:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54602690..54602889
location: region:54602690-54602889:1
BFO_0000051: feature:54602690-54602889:1:region
SIO_000974: 8db416ab-4dfc-4f46-b90c-c615d40d70cb

position:54602690:1
position: 54602690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54602889:1
position: 54602889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8db416ab-4dfc-4f46-b90c-c615d40d70cb
SIO_000300: 1
SIO_000628: feature:54602690-54602889:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 55053853..55054052
location: region:55053853-55054052:1
BFO_0000051: feature:55053853-55054052:1:region
SIO_000974: c0d7e298-f7d0-4aea-b9a8-c4b776594f20

position:55053853:1
position: 55053853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55054052:1
position: 55054052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c0d7e298-f7d0-4aea-b9a8-c4b776594f20
SIO_000300: 1
SIO_000628: feature:55053853-55054052:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 55146323..55146522
location: region:55146323-55146522:1
BFO_0000051: feature:55146323-55146522:1:region
SIO_000974: 7ced5949-4da6-422e-914d-c65a57380ceb

position:55146323:1
position: 55146323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55146522:1
position: 55146522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ced5949-4da6-422e-914d-c65a57380ceb
SIO_000300: 1
SIO_000628: feature:55146323-55146522:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 55619636..55619835
location: region:55619636-55619835:1
BFO_0000051: feature:55619636-55619835:1:region
SIO_000974: 50585841-e696-482e-82b9-5d3cd8e2bf3e

position:55619636:1
position: 55619636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55619835:1
position: 55619835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50585841-e696-482e-82b9-5d3cd8e2bf3e
SIO_000300: 1
SIO_000628: feature:55619636-55619835:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56415836..56416035
location: region:56415836-56416035:1
BFO_0000051: feature:56415836-56416035:1:region
SIO_000974: 5b4a63c9-db94-48e2-ab6f-53b288090840

position:56415836:1
position: 56415836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56416035:1
position: 56416035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b4a63c9-db94-48e2-ab6f-53b288090840
SIO_000300: 1
SIO_000628: feature:56415836-56416035:1:region

Coleophora flavipennella genome assembly, chromosome: W.
type: Entry
definition: Coleophora flavipennella genome assembly, chromosome: W.
sequence version: OX369309.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 7277349
topology: linear
RO_0000086: SO_0000987
location: 1..7277349
location: region:1-7277349:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7277349:1
position: 7277349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7277349:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 170857..171056
location: region:170857-171056:1
BFO_0000051: feature:170857-171056:1:region
SIO_000974: 9d97e6e3-b8bc-4e87-ac9d-5d34f2980c73

position:170857:1
position: 170857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171056:1
position: 171056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d97e6e3-b8bc-4e87-ac9d-5d34f2980c73
SIO_000300: 1
SIO_000628: feature:170857-171056:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3579057..3579256
location: region:3579057-3579256:1
BFO_0000051: feature:3579057-3579256:1:region
SIO_000974: 090bb675-3fc7-4ac3-b4c7-9c7debe51073

position:3579057:1
position: 3579057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3579256:1
position: 3579256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

090bb675-3fc7-4ac3-b4c7-9c7debe51073
SIO_000300: 1
SIO_000628: feature:3579057-3579256:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3734913..3735112
location: region:3734913-3735112:1
BFO_0000051: feature:3734913-3735112:1:region
SIO_000974: e8f1fc77-d058-4eb1-929d-fc0c63ebf47b

position:3734913:1
position: 3734913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3735112:1
position: 3735112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8f1fc77-d058-4eb1-929d-fc0c63ebf47b
SIO_000300: 1
SIO_000628: feature:3734913-3735112:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3890997..3891196
location: region:3890997-3891196:1
BFO_0000051: feature:3890997-3891196:1:region
SIO_000974: b8ea1ec5-1c70-4627-a1ee-97e3a283af06

position:3890997:1
position: 3890997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3891196:1
position: 3891196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8ea1ec5-1c70-4627-a1ee-97e3a283af06
SIO_000300: 1
SIO_000628: feature:3890997-3891196:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4004208..4004407
location: region:4004208-4004407:1
BFO_0000051: feature:4004208-4004407:1:region
SIO_000974: 8bb9d941-c2fd-4133-af42-1252d6ea05c7

position:4004208:1
position: 4004208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4004407:1
position: 4004407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bb9d941-c2fd-4133-af42-1252d6ea05c7
SIO_000300: 1
SIO_000628: feature:4004208-4004407:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4359820..4360019
location: region:4359820-4360019:1
BFO_0000051: feature:4359820-4360019:1:region
SIO_000974: 4a3badc2-a43b-401e-ba99-073d06061834

position:4359820:1
position: 4359820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4360019:1
position: 4360019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4a3badc2-a43b-401e-ba99-073d06061834
SIO_000300: 1
SIO_000628: feature:4359820-4360019:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4412118..4412317
location: region:4412118-4412317:1
BFO_0000051: feature:4412118-4412317:1:region
SIO_000974: 805fc6d9-44d0-4cec-9ac0-153971d82954

position:4412118:1
position: 4412118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4412317:1
position: 4412317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

805fc6d9-44d0-4cec-9ac0-153971d82954
SIO_000300: 1
SIO_000628: feature:4412118-4412317:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4507652..4507851
location: region:4507652-4507851:1
BFO_0000051: feature:4507652-4507851:1:region
SIO_000974: d793ebe9-defe-470d-b348-e8d931b0d8dc

position:4507652:1
position: 4507652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4507851:1
position: 4507851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d793ebe9-defe-470d-b348-e8d931b0d8dc
SIO_000300: 1
SIO_000628: feature:4507652-4507851:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4542536..4542735
location: region:4542536-4542735:1
BFO_0000051: feature:4542536-4542735:1:region
SIO_000974: a6a62868-4756-438b-aa9f-0ee202ed5d54

position:4542536:1
position: 4542536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4542735:1
position: 4542735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a6a62868-4756-438b-aa9f-0ee202ed5d54
SIO_000300: 1
SIO_000628: feature:4542536-4542735:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4624685..4624884
location: region:4624685-4624884:1
BFO_0000051: feature:4624685-4624884:1:region
SIO_000974: e6b06a9a-f270-4810-afeb-b95ac8521c61

position:4624685:1
position: 4624685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4624884:1
position: 4624884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6b06a9a-f270-4810-afeb-b95ac8521c61
SIO_000300: 1
SIO_000628: feature:4624685-4624884:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4808494..4808693
location: region:4808494-4808693:1
BFO_0000051: feature:4808494-4808693:1:region
SIO_000974: 4f55b666-b0f7-480e-9a41-de02cd8b522f

position:4808494:1
position: 4808494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4808693:1
position: 4808693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f55b666-b0f7-480e-9a41-de02cd8b522f
SIO_000300: 1
SIO_000628: feature:4808494-4808693:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5301595..5301794
location: region:5301595-5301794:1
BFO_0000051: feature:5301595-5301794:1:region
SIO_000974: ce220ca1-c148-4b08-af76-987c9343462b

position:5301595:1
position: 5301595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5301794:1
position: 5301794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ce220ca1-c148-4b08-af76-987c9343462b
SIO_000300: 1
SIO_000628: feature:5301595-5301794:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5551986..5552185
location: region:5551986-5552185:1
BFO_0000051: feature:5551986-5552185:1:region
SIO_000974: 14e52d65-3f99-4533-ad30-58963a454ef8

position:5551986:1
position: 5551986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5552185:1
position: 5552185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

14e52d65-3f99-4533-ad30-58963a454ef8
SIO_000300: 1
SIO_000628: feature:5551986-5552185:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5660583..5660782
location: region:5660583-5660782:1
BFO_0000051: feature:5660583-5660782:1:region
SIO_000974: 014349e9-ffe8-4304-b968-0615ada59495

position:5660583:1
position: 5660583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5660782:1
position: 5660782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

014349e9-ffe8-4304-b968-0615ada59495
SIO_000300: 1
SIO_000628: feature:5660583-5660782:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6587826..6588025
location: region:6587826-6588025:1
BFO_0000051: feature:6587826-6588025:1:region
SIO_000974: 9a7b71dd-7daa-479c-a13b-9c6de42a1f76

position:6587826:1
position: 6587826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6588025:1
position: 6588025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a7b71dd-7daa-479c-a13b-9c6de42a1f76
SIO_000300: 1
SIO_000628: feature:6587826-6588025:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6666900..6667099
location: region:6666900-6667099:1
BFO_0000051: feature:6666900-6667099:1:region
SIO_000974: 9ee95f75-176b-4e8a-aabf-3fe4fac96c1f

position:6666900:1
position: 6666900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6667099:1
position: 6667099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9ee95f75-176b-4e8a-aabf-3fe4fac96c1f
SIO_000300: 1
SIO_000628: feature:6666900-6667099:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6832850..6833049
location: region:6832850-6833049:1
BFO_0000051: feature:6832850-6833049:1:region
SIO_000974: b0cadf8c-f28b-4dff-930e-28294104658f

position:6832850:1
position: 6832850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6833049:1
position: 6833049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0cadf8c-f28b-4dff-930e-28294104658f
SIO_000300: 1
SIO_000628: feature:6832850-6833049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6933754..6933953
location: region:6933754-6933953:1
BFO_0000051: feature:6933754-6933953:1:region
SIO_000974: 5edfffa5-2eaf-4002-a21d-ddb46b37d10e

position:6933754:1
position: 6933754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6933953:1
position: 6933953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5edfffa5-2eaf-4002-a21d-ddb46b37d10e
SIO_000300: 1
SIO_000628: feature:6933754-6933953:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100951
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7153937..7154136
location: region:7153937-7154136:1
BFO_0000051: feature:7153937-7154136:1:region
SIO_000974: 81534ecf-d6fd-409f-84e1-61814c7b2faa

position:7153937:1
position: 7153937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7154136:1
position: 7154136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

81534ecf-d6fd-409f-84e1-61814c7b2faa
SIO_000300: 1
SIO_000628: feature:7153937-7154136:1:region

Coleophora flavipennella genome assembly, organelle: mitochondrion.
type: Entry
definition: Coleophora flavipennella genome assembly, organelle: mitochondrion.
sequence version: OX369310.1
sequence date: 2022-11-08
sequence: sequence
division: INV
source: mitochondrion Coleophora flavipennella
organism: Coleophora flavipennella
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.
reference: 1
comment: The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15766
topology: linear
RO_0000086: SO_0000987
location: 1..15766
location: region:1-15766:1
RO_0002162: 1100951

1
journal: Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15766:1
position: 15766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15766:1:source
BFO_0000050: sequence
organism: Coleophora flavipennella
organelle: mitochondrion
mol type: genomic DNA

Yponomeuta rorrellus genome assembly, chromosome: 1.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 1.
sequence version: OX370994.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 23674068
topology: linear
RO_0000086: SO_0000987
location: 1..23674068
location: region:1-23674068:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23674068:1
position: 23674068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23674068:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 1
mol type: genomic DNA

263928
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3164512..3164711
location: region:3164512-3164711:1
BFO_0000051: feature:3164512-3164711:1:region
SIO_000974: ab0fca96-1a8b-4a53-b370-55b0f771c0f6

position:3164512:1
position: 3164512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3164711:1
position: 3164711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab0fca96-1a8b-4a53-b370-55b0f771c0f6
SIO_000300: 1
SIO_000628: feature:3164512-3164711:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5125497..5125696
location: region:5125497-5125696:1
BFO_0000051: feature:5125497-5125696:1:region
SIO_000974: dbd1abee-d17b-4068-bc59-8860242749c5

position:5125497:1
position: 5125497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5125696:1
position: 5125696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dbd1abee-d17b-4068-bc59-8860242749c5
SIO_000300: 1
SIO_000628: feature:5125497-5125696:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9652190..9652389
location: region:9652190-9652389:1
BFO_0000051: feature:9652190-9652389:1:region
SIO_000974: fbd38582-4ada-4472-8799-20e11d1e6aea

position:9652190:1
position: 9652190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9652389:1
position: 9652389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbd38582-4ada-4472-8799-20e11d1e6aea
SIO_000300: 1
SIO_000628: feature:9652190-9652389:1:region

Yponomeuta rorrellus genome assembly, chromosome: Z.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: Z.
sequence version: OX370995.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 22843617
topology: linear
RO_0000086: SO_0000987
location: 1..22843617
location: region:1-22843617:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22843617:1
position: 22843617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22843617:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: Z
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 814739..814938
location: region:814739-814938:1
BFO_0000051: feature:814739-814938:1:region
SIO_000974: 7963f5de-dd73-4d4e-9d90-348f42dba209

position:814739:1
position: 814739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814938:1
position: 814938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7963f5de-dd73-4d4e-9d90-348f42dba209
SIO_000300: 1
SIO_000628: feature:814739-814938:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1596853..1597052
location: region:1596853-1597052:1
BFO_0000051: feature:1596853-1597052:1:region
SIO_000974: 870cd053-f6ed-49e4-926f-f058c27a86bd

position:1596853:1
position: 1596853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1597052:1
position: 1597052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

870cd053-f6ed-49e4-926f-f058c27a86bd
SIO_000300: 1
SIO_000628: feature:1596853-1597052:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1931059..1931258
location: region:1931059-1931258:1
BFO_0000051: feature:1931059-1931258:1:region
SIO_000974: 022c54b4-7ecf-4b63-8014-86dcf9be6e60

position:1931059:1
position: 1931059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1931258:1
position: 1931258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

022c54b4-7ecf-4b63-8014-86dcf9be6e60
SIO_000300: 1
SIO_000628: feature:1931059-1931258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3015939..3016138
location: region:3015939-3016138:1
BFO_0000051: feature:3015939-3016138:1:region
SIO_000974: 1d7ee5a5-c41a-45f4-924d-bd941c1aca81

position:3015939:1
position: 3015939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3016138:1
position: 3016138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1d7ee5a5-c41a-45f4-924d-bd941c1aca81
SIO_000300: 1
SIO_000628: feature:3015939-3016138:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3367206..3367405
location: region:3367206-3367405:1
BFO_0000051: feature:3367206-3367405:1:region
SIO_000974: 8883ab51-84fd-4c18-9ffa-793d5e848f81

position:3367206:1
position: 3367206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3367405:1
position: 3367405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8883ab51-84fd-4c18-9ffa-793d5e848f81
SIO_000300: 1
SIO_000628: feature:3367206-3367405:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4275356..4275555
location: region:4275356-4275555:1
BFO_0000051: feature:4275356-4275555:1:region
SIO_000974: 7fa00139-48fa-4f1a-b8dd-c845acaffe3a

position:4275356:1
position: 4275356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4275555:1
position: 4275555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7fa00139-48fa-4f1a-b8dd-c845acaffe3a
SIO_000300: 1
SIO_000628: feature:4275356-4275555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4837264..4837463
location: region:4837264-4837463:1
BFO_0000051: feature:4837264-4837463:1:region
SIO_000974: f9ac3aff-f078-470b-9cc2-9678560137e0

position:4837264:1
position: 4837264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4837463:1
position: 4837463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9ac3aff-f078-470b-9cc2-9678560137e0
SIO_000300: 1
SIO_000628: feature:4837264-4837463:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4922762..4922961
location: region:4922762-4922961:1
BFO_0000051: feature:4922762-4922961:1:region
SIO_000974: 959b5c9c-86de-4428-aa5f-483a40506197

position:4922762:1
position: 4922762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4922961:1
position: 4922961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

959b5c9c-86de-4428-aa5f-483a40506197
SIO_000300: 1
SIO_000628: feature:4922762-4922961:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6872286..6872485
location: region:6872286-6872485:1
BFO_0000051: feature:6872286-6872485:1:region
SIO_000974: 873f4f2f-36fa-4605-9616-24374e56cc20

position:6872286:1
position: 6872286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6872485:1
position: 6872485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

873f4f2f-36fa-4605-9616-24374e56cc20
SIO_000300: 1
SIO_000628: feature:6872286-6872485:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8683984..8684183
location: region:8683984-8684183:1
BFO_0000051: feature:8683984-8684183:1:region
SIO_000974: e949fafa-506b-4cb5-b696-6be36b740c91

position:8683984:1
position: 8683984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8684183:1
position: 8684183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e949fafa-506b-4cb5-b696-6be36b740c91
SIO_000300: 1
SIO_000628: feature:8683984-8684183:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10237378..10237577
location: region:10237378-10237577:1
BFO_0000051: feature:10237378-10237577:1:region
SIO_000974: d7e07c0a-67ba-4f9c-a4d3-c294e2cc030d

position:10237378:1
position: 10237378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10237577:1
position: 10237577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7e07c0a-67ba-4f9c-a4d3-c294e2cc030d
SIO_000300: 1
SIO_000628: feature:10237378-10237577:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11459587..11459786
location: region:11459587-11459786:1
BFO_0000051: feature:11459587-11459786:1:region
SIO_000974: 1c184491-4214-494e-97c4-dcd6ee21b454

position:11459587:1
position: 11459587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11459786:1
position: 11459786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c184491-4214-494e-97c4-dcd6ee21b454
SIO_000300: 1
SIO_000628: feature:11459587-11459786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12348599..12348798
location: region:12348599-12348798:1
BFO_0000051: feature:12348599-12348798:1:region
SIO_000974: 3368da91-319d-41fa-b766-5d1572b1c07d

position:12348599:1
position: 12348599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12348798:1
position: 12348798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3368da91-319d-41fa-b766-5d1572b1c07d
SIO_000300: 1
SIO_000628: feature:12348599-12348798:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13607457..13607656
location: region:13607457-13607656:1
BFO_0000051: feature:13607457-13607656:1:region
SIO_000974: 23295a00-b332-4779-b74d-09963872b6a6

position:13607457:1
position: 13607457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13607656:1
position: 13607656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

23295a00-b332-4779-b74d-09963872b6a6
SIO_000300: 1
SIO_000628: feature:13607457-13607656:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16150132..16150331
location: region:16150132-16150331:1
BFO_0000051: feature:16150132-16150331:1:region
SIO_000974: f789ef62-bb6f-4447-bed0-a03be31e3ba5

position:16150132:1
position: 16150132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16150331:1
position: 16150331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f789ef62-bb6f-4447-bed0-a03be31e3ba5
SIO_000300: 1
SIO_000628: feature:16150132-16150331:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16197049..16197248
location: region:16197049-16197248:1
BFO_0000051: feature:16197049-16197248:1:region
SIO_000974: 95f66a3d-3d58-4c3b-8c32-3823d2ea0c7f

position:16197049:1
position: 16197049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16197248:1
position: 16197248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95f66a3d-3d58-4c3b-8c32-3823d2ea0c7f
SIO_000300: 1
SIO_000628: feature:16197049-16197248:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16675154..16675353
location: region:16675154-16675353:1
BFO_0000051: feature:16675154-16675353:1:region
SIO_000974: ae206d42-d0cc-446d-b2f3-b00addddc730

position:16675154:1
position: 16675154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16675353:1
position: 16675353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae206d42-d0cc-446d-b2f3-b00addddc730
SIO_000300: 1
SIO_000628: feature:16675154-16675353:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17632354..17632553
location: region:17632354-17632553:1
BFO_0000051: feature:17632354-17632553:1:region
SIO_000974: 7715aed1-fefa-403d-a088-52ae56f62675

position:17632354:1
position: 17632354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17632553:1
position: 17632553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7715aed1-fefa-403d-a088-52ae56f62675
SIO_000300: 1
SIO_000628: feature:17632354-17632553:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18951554..18951753
location: region:18951554-18951753:1
BFO_0000051: feature:18951554-18951753:1:region
SIO_000974: 789db85e-5716-4de6-8f45-1e93c3ca886b

position:18951554:1
position: 18951554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18951753:1
position: 18951753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

789db85e-5716-4de6-8f45-1e93c3ca886b
SIO_000300: 1
SIO_000628: feature:18951554-18951753:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20548325..20548524
location: region:20548325-20548524:1
BFO_0000051: feature:20548325-20548524:1:region
SIO_000974: 1013f2c8-03cc-4780-b0b8-5759703226df

position:20548325:1
position: 20548325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20548524:1
position: 20548524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1013f2c8-03cc-4780-b0b8-5759703226df
SIO_000300: 1
SIO_000628: feature:20548325-20548524:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20642224..20642423
location: region:20642224-20642423:1
BFO_0000051: feature:20642224-20642423:1:region
SIO_000974: 195d0c0a-4c49-43a7-be86-df5165776554

position:20642224:1
position: 20642224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20642423:1
position: 20642423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

195d0c0a-4c49-43a7-be86-df5165776554
SIO_000300: 1
SIO_000628: feature:20642224-20642423:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21371985..21372184
location: region:21371985-21372184:1
BFO_0000051: feature:21371985-21372184:1:region
SIO_000974: 6de0f458-48fc-482c-8bba-e68ae9e7770f

position:21371985:1
position: 21371985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21372184:1
position: 21372184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6de0f458-48fc-482c-8bba-e68ae9e7770f
SIO_000300: 1
SIO_000628: feature:21371985-21372184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21814677..21814876
location: region:21814677-21814876:1
BFO_0000051: feature:21814677-21814876:1:region
SIO_000974: 24f43f50-0a2b-4ac6-8b4a-c583260862ec

position:21814677:1
position: 21814677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21814876:1
position: 21814876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24f43f50-0a2b-4ac6-8b4a-c583260862ec
SIO_000300: 1
SIO_000628: feature:21814677-21814876:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22259418..22259617
location: region:22259418-22259617:1
BFO_0000051: feature:22259418-22259617:1:region
SIO_000974: 237a3e32-9993-40fe-8557-07a7a4c31005

position:22259418:1
position: 22259418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22259617:1
position: 22259617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

237a3e32-9993-40fe-8557-07a7a4c31005
SIO_000300: 1
SIO_000628: feature:22259418-22259617:1:region

Yponomeuta rorrellus genome assembly, chromosome: 2.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 2.
sequence version: OX370996.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 22828510
topology: linear
RO_0000086: SO_0000987
location: 1..22828510
location: region:1-22828510:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22828510:1
position: 22828510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22828510:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1015528..1015727
location: region:1015528-1015727:1
BFO_0000051: feature:1015528-1015727:1:region
SIO_000974: cde8ed34-a636-48da-88e6-4fd17c83d854

position:1015528:1
position: 1015528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015727:1
position: 1015727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cde8ed34-a636-48da-88e6-4fd17c83d854
SIO_000300: 1
SIO_000628: feature:1015528-1015727:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5371176..5371375
location: region:5371176-5371375:1
BFO_0000051: feature:5371176-5371375:1:region
SIO_000974: ad48b91a-a8a7-4933-b1ff-55bc69b57a05

position:5371176:1
position: 5371176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5371375:1
position: 5371375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad48b91a-a8a7-4933-b1ff-55bc69b57a05
SIO_000300: 1
SIO_000628: feature:5371176-5371375:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8959311..8959510
location: region:8959311-8959510:1
BFO_0000051: feature:8959311-8959510:1:region
SIO_000974: 738cfdd9-be6d-47c7-9a8c-9accedd71138

position:8959311:1
position: 8959311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8959510:1
position: 8959510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

738cfdd9-be6d-47c7-9a8c-9accedd71138
SIO_000300: 1
SIO_000628: feature:8959311-8959510:1:region

Yponomeuta rorrellus genome assembly, chromosome: 3.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 3.
sequence version: OX370997.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19920028
topology: linear
RO_0000086: SO_0000987
location: 1..19920028
location: region:1-19920028:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19920028:1
position: 19920028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19920028:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7606211..7606410
location: region:7606211-7606410:1
BFO_0000051: feature:7606211-7606410:1:region
SIO_000974: 57600629-39ac-4419-8f51-65bbd09ae082

position:7606211:1
position: 7606211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7606410:1
position: 7606410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57600629-39ac-4419-8f51-65bbd09ae082
SIO_000300: 1
SIO_000628: feature:7606211-7606410:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17744829..17745028
location: region:17744829-17745028:1
BFO_0000051: feature:17744829-17745028:1:region
SIO_000974: 95bc4648-5292-4254-9781-981f7e27cb67

position:17744829:1
position: 17744829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17745028:1
position: 17745028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95bc4648-5292-4254-9781-981f7e27cb67
SIO_000300: 1
SIO_000628: feature:17744829-17745028:1:region

Yponomeuta rorrellus genome assembly, chromosome: 4.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 4.
sequence version: OX370998.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 22578349
topology: linear
RO_0000086: SO_0000987
location: 1..22578349
location: region:1-22578349:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22578349:1
position: 22578349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22578349:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4437193..4437392
location: region:4437193-4437392:1
BFO_0000051: feature:4437193-4437392:1:region
SIO_000974: 24a32d8c-2484-44bc-96a8-a18c45db865d

position:4437193:1
position: 4437193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4437392:1
position: 4437392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24a32d8c-2484-44bc-96a8-a18c45db865d
SIO_000300: 1
SIO_000628: feature:4437193-4437392:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12280112..12280311
location: region:12280112-12280311:1
BFO_0000051: feature:12280112-12280311:1:region
SIO_000974: 70725552-cde2-4409-af9b-3532e860ccd5

position:12280112:1
position: 12280112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12280311:1
position: 12280311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

70725552-cde2-4409-af9b-3532e860ccd5
SIO_000300: 1
SIO_000628: feature:12280112-12280311:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12947858..12948057
location: region:12947858-12948057:1
BFO_0000051: feature:12947858-12948057:1:region
SIO_000974: 3c02c605-8072-4f35-9f4f-5fb9d9703dc8

position:12947858:1
position: 12947858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12948057:1
position: 12948057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c02c605-8072-4f35-9f4f-5fb9d9703dc8
SIO_000300: 1
SIO_000628: feature:12947858-12948057:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14222424..14222623
location: region:14222424-14222623:1
BFO_0000051: feature:14222424-14222623:1:region
SIO_000974: a3355a39-0340-4fe5-af85-8304b365c9b6

position:14222424:1
position: 14222424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14222623:1
position: 14222623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3355a39-0340-4fe5-af85-8304b365c9b6
SIO_000300: 1
SIO_000628: feature:14222424-14222623:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21274319..21274518
location: region:21274319-21274518:1
BFO_0000051: feature:21274319-21274518:1:region
SIO_000974: e73b0c4d-21e3-4cd2-8339-39fa8badcee0

position:21274319:1
position: 21274319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21274518:1
position: 21274518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e73b0c4d-21e3-4cd2-8339-39fa8badcee0
SIO_000300: 1
SIO_000628: feature:21274319-21274518:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22348270..22348469
location: region:22348270-22348469:1
BFO_0000051: feature:22348270-22348469:1:region
SIO_000974: 53390bb6-61c3-4b4e-bf36-85ba41cb6233

position:22348270:1
position: 22348270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22348469:1
position: 22348469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53390bb6-61c3-4b4e-bf36-85ba41cb6233
SIO_000300: 1
SIO_000628: feature:22348270-22348469:1:region

Yponomeuta rorrellus genome assembly, chromosome: 5.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 5.
sequence version: OX370999.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 21572501
topology: linear
RO_0000086: SO_0000987
location: 1..21572501
location: region:1-21572501:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21572501:1
position: 21572501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21572501:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7431067..7431266
location: region:7431067-7431266:1
BFO_0000051: feature:7431067-7431266:1:region
SIO_000974: 7c2fd50a-46a2-4719-88be-0f6e9ba68ccf

position:7431067:1
position: 7431067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7431266:1
position: 7431266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7c2fd50a-46a2-4719-88be-0f6e9ba68ccf
SIO_000300: 1
SIO_000628: feature:7431067-7431266:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16833502..16833701
location: region:16833502-16833701:1
BFO_0000051: feature:16833502-16833701:1:region
SIO_000974: 484f2198-0ed2-4174-90e1-98fd45c1312a

position:16833502:1
position: 16833502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16833701:1
position: 16833701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

484f2198-0ed2-4174-90e1-98fd45c1312a
SIO_000300: 1
SIO_000628: feature:16833502-16833701:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18688302..18688501
location: region:18688302-18688501:1
BFO_0000051: feature:18688302-18688501:1:region
SIO_000974: f3668e90-152b-4d59-b02d-db8fcbc43af3

position:18688302:1
position: 18688302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18688501:1
position: 18688501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f3668e90-152b-4d59-b02d-db8fcbc43af3
SIO_000300: 1
SIO_000628: feature:18688302-18688501:1:region

Yponomeuta rorrellus genome assembly, chromosome: 6.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 6.
sequence version: OX371000.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 21508572
topology: linear
RO_0000086: SO_0000987
location: 1..21508572
location: region:1-21508572:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21508572:1
position: 21508572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21508572:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1327001..1327200
location: region:1327001-1327200:1
BFO_0000051: feature:1327001-1327200:1:region
SIO_000974: b8a543b0-b256-4425-9015-2b4390511b23

position:1327001:1
position: 1327001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1327200:1
position: 1327200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8a543b0-b256-4425-9015-2b4390511b23
SIO_000300: 1
SIO_000628: feature:1327001-1327200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1824399..1824598
location: region:1824399-1824598:1
BFO_0000051: feature:1824399-1824598:1:region
SIO_000974: ba3a6873-1bde-48cc-ab51-7c3db01ff87e

position:1824399:1
position: 1824399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1824598:1
position: 1824598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba3a6873-1bde-48cc-ab51-7c3db01ff87e
SIO_000300: 1
SIO_000628: feature:1824399-1824598:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3387374..3387573
location: region:3387374-3387573:1
BFO_0000051: feature:3387374-3387573:1:region
SIO_000974: e4b93563-f6f9-42c8-8ed3-0643f2762591

position:3387374:1
position: 3387374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3387573:1
position: 3387573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4b93563-f6f9-42c8-8ed3-0643f2762591
SIO_000300: 1
SIO_000628: feature:3387374-3387573:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3890700..3890899
location: region:3890700-3890899:1
BFO_0000051: feature:3890700-3890899:1:region
SIO_000974: 9823fe3f-300f-4816-b9fe-337c59166d54

position:3890700:1
position: 3890700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3890899:1
position: 3890899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9823fe3f-300f-4816-b9fe-337c59166d54
SIO_000300: 1
SIO_000628: feature:3890700-3890899:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15745173..15745372
location: region:15745173-15745372:1
BFO_0000051: feature:15745173-15745372:1:region
SIO_000974: b9a4f866-a496-4d64-8ef0-225a66d4add0

position:15745173:1
position: 15745173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15745372:1
position: 15745372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9a4f866-a496-4d64-8ef0-225a66d4add0
SIO_000300: 1
SIO_000628: feature:15745173-15745372:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17348373..17348572
location: region:17348373-17348572:1
BFO_0000051: feature:17348373-17348572:1:region
SIO_000974: e78e577b-a667-4300-a874-ec6232a44b00

position:17348373:1
position: 17348373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17348572:1
position: 17348572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e78e577b-a667-4300-a874-ec6232a44b00
SIO_000300: 1
SIO_000628: feature:17348373-17348572:1:region

Yponomeuta rorrellus genome assembly, chromosome: 7.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 7.
sequence version: OX371001.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 21873286
topology: linear
RO_0000086: SO_0000987
location: 1..21873286
location: region:1-21873286:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21873286:1
position: 21873286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21873286:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5318537..5318736
location: region:5318537-5318736:1
BFO_0000051: feature:5318537-5318736:1:region
SIO_000974: 0d91ff5c-2b99-41e1-ab7b-13585dffa545

position:5318537:1
position: 5318537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5318736:1
position: 5318736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0d91ff5c-2b99-41e1-ab7b-13585dffa545
SIO_000300: 1
SIO_000628: feature:5318537-5318736:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8121227..8121426
location: region:8121227-8121426:1
BFO_0000051: feature:8121227-8121426:1:region
SIO_000974: 331e2fba-6cb8-4ae5-bea3-9833c83ed8a9

position:8121227:1
position: 8121227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8121426:1
position: 8121426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

331e2fba-6cb8-4ae5-bea3-9833c83ed8a9
SIO_000300: 1
SIO_000628: feature:8121227-8121426:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19088407..19088606
location: region:19088407-19088606:1
BFO_0000051: feature:19088407-19088606:1:region
SIO_000974: e5611d9e-ee6b-40bc-b857-11e3cd0168a1

position:19088407:1
position: 19088407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19088606:1
position: 19088606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5611d9e-ee6b-40bc-b857-11e3cd0168a1
SIO_000300: 1
SIO_000628: feature:19088407-19088606:1:region

Yponomeuta rorrellus genome assembly, chromosome: 8.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 8.
sequence version: OX371002.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 21710809
topology: linear
RO_0000086: SO_0000987
location: 1..21710809
location: region:1-21710809:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21710809:1
position: 21710809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21710809:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3494105..3494304
location: region:3494105-3494304:1
BFO_0000051: feature:3494105-3494304:1:region
SIO_000974: addc4453-128e-49a1-898d-fdf56b925b34

position:3494105:1
position: 3494105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3494304:1
position: 3494304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

addc4453-128e-49a1-898d-fdf56b925b34
SIO_000300: 1
SIO_000628: feature:3494105-3494304:1:region

Yponomeuta rorrellus genome assembly, chromosome: 9.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 9.
sequence version: OX371003.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 21171176
topology: linear
RO_0000086: SO_0000987
location: 1..21171176
location: region:1-21171176:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21171176:1
position: 21171176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21171176:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5594067..5594266
location: region:5594067-5594266:1
BFO_0000051: feature:5594067-5594266:1:region
SIO_000974: 0231a74c-4d33-4660-98c4-31fb7ee04664

position:5594067:1
position: 5594067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5594266:1
position: 5594266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0231a74c-4d33-4660-98c4-31fb7ee04664
SIO_000300: 1
SIO_000628: feature:5594067-5594266:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15733629..15733828
location: region:15733629-15733828:1
BFO_0000051: feature:15733629-15733828:1:region
SIO_000974: 815080d5-d8c4-49d2-afc3-53f241b381f0

position:15733629:1
position: 15733629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15733828:1
position: 15733828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

815080d5-d8c4-49d2-afc3-53f241b381f0
SIO_000300: 1
SIO_000628: feature:15733629-15733828:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19683205..19683404
location: region:19683205-19683404:1
BFO_0000051: feature:19683205-19683404:1:region
SIO_000974: fc44df20-0af3-4c9b-88fd-34930a2315c7

position:19683205:1
position: 19683205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19683404:1
position: 19683404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc44df20-0af3-4c9b-88fd-34930a2315c7
SIO_000300: 1
SIO_000628: feature:19683205-19683404:1:region

Yponomeuta rorrellus genome assembly, chromosome: 10.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 10.
sequence version: OX371004.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 20144208
topology: linear
RO_0000086: SO_0000987
location: 1..20144208
location: region:1-20144208:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20144208:1
position: 20144208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20144208:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4140611..4140810
location: region:4140611-4140810:1
BFO_0000051: feature:4140611-4140810:1:region
SIO_000974: c80ec8e2-df11-4813-8a20-dca076b87f73

position:4140611:1
position: 4140611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4140810:1
position: 4140810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c80ec8e2-df11-4813-8a20-dca076b87f73
SIO_000300: 1
SIO_000628: feature:4140611-4140810:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9019809..9020008
location: region:9019809-9020008:1
BFO_0000051: feature:9019809-9020008:1:region
SIO_000974: e44b77c2-0d96-4530-926a-0cf5d469c879

position:9019809:1
position: 9019809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9020008:1
position: 9020008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e44b77c2-0d96-4530-926a-0cf5d469c879
SIO_000300: 1
SIO_000628: feature:9019809-9020008:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12407967..12408166
location: region:12407967-12408166:1
BFO_0000051: feature:12407967-12408166:1:region
SIO_000974: 1f820fca-310e-4a5b-8f90-bb3c5a859212

position:12407967:1
position: 12407967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12408166:1
position: 12408166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f820fca-310e-4a5b-8f90-bb3c5a859212
SIO_000300: 1
SIO_000628: feature:12407967-12408166:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15040728..15040927
location: region:15040728-15040927:1
BFO_0000051: feature:15040728-15040927:1:region
SIO_000974: 8bb3c200-4982-40a5-9bb1-5a0c3ac0e563

position:15040728:1
position: 15040728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15040927:1
position: 15040927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bb3c200-4982-40a5-9bb1-5a0c3ac0e563
SIO_000300: 1
SIO_000628: feature:15040728-15040927:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15218941..15219140
location: region:15218941-15219140:1
BFO_0000051: feature:15218941-15219140:1:region
SIO_000974: b208525d-839d-4f57-b175-85e7a2d1026d

position:15218941:1
position: 15218941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15219140:1
position: 15219140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b208525d-839d-4f57-b175-85e7a2d1026d
SIO_000300: 1
SIO_000628: feature:15218941-15219140:1:region

Yponomeuta rorrellus genome assembly, chromosome: 11.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 11.
sequence version: OX371005.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19247522
topology: linear
RO_0000086: SO_0000987
location: 1..19247522
location: region:1-19247522:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19247522:1
position: 19247522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19247522:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3776712..3776911
location: region:3776712-3776911:1
BFO_0000051: feature:3776712-3776911:1:region
SIO_000974: 6f363b2a-1c4d-4417-8895-24199d52e168

position:3776712:1
position: 3776712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3776911:1
position: 3776911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6f363b2a-1c4d-4417-8895-24199d52e168
SIO_000300: 1
SIO_000628: feature:3776712-3776911:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3915571..3915770
location: region:3915571-3915770:1
BFO_0000051: feature:3915571-3915770:1:region
SIO_000974: 47851987-7b6f-456d-870c-093db15692ac

position:3915571:1
position: 3915571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3915770:1
position: 3915770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

47851987-7b6f-456d-870c-093db15692ac
SIO_000300: 1
SIO_000628: feature:3915571-3915770:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5824223..5824422
location: region:5824223-5824422:1
BFO_0000051: feature:5824223-5824422:1:region
SIO_000974: f7cdd42d-16f0-4f62-a5a3-50dce800c54b

position:5824223:1
position: 5824223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5824422:1
position: 5824422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f7cdd42d-16f0-4f62-a5a3-50dce800c54b
SIO_000300: 1
SIO_000628: feature:5824223-5824422:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6031266..6031465
location: region:6031266-6031465:1
BFO_0000051: feature:6031266-6031465:1:region
SIO_000974: d265e874-60be-4345-ad38-8b050dc007b1

position:6031266:1
position: 6031266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6031465:1
position: 6031465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d265e874-60be-4345-ad38-8b050dc007b1
SIO_000300: 1
SIO_000628: feature:6031266-6031465:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16986449..16986648
location: region:16986449-16986648:1
BFO_0000051: feature:16986449-16986648:1:region
SIO_000974: 09693b17-8f63-4331-a9ad-1277dfeb99c2

position:16986449:1
position: 16986449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16986648:1
position: 16986648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

09693b17-8f63-4331-a9ad-1277dfeb99c2
SIO_000300: 1
SIO_000628: feature:16986449-16986648:1:region

Yponomeuta rorrellus genome assembly, chromosome: 12.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 12.
sequence version: OX371006.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19760461
topology: linear
RO_0000086: SO_0000987
location: 1..19760461
location: region:1-19760461:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19760461:1
position: 19760461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19760461:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 12
mol type: genomic DNA

Yponomeuta rorrellus genome assembly, chromosome: 13.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 13.
sequence version: OX371007.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19126083
topology: linear
RO_0000086: SO_0000987
location: 1..19126083
location: region:1-19126083:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19126083:1
position: 19126083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19126083:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1689330..1689529
location: region:1689330-1689529:1
BFO_0000051: feature:1689330-1689529:1:region
SIO_000974: 969e2b28-b383-4c2c-ada2-14d16e44f2eb

position:1689330:1
position: 1689330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1689529:1
position: 1689529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

969e2b28-b383-4c2c-ada2-14d16e44f2eb
SIO_000300: 1
SIO_000628: feature:1689330-1689529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9671717..9671916
location: region:9671717-9671916:1
BFO_0000051: feature:9671717-9671916:1:region
SIO_000974: 24e16b3f-05da-41b6-b3be-455a9987bd03

position:9671717:1
position: 9671717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9671916:1
position: 9671916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24e16b3f-05da-41b6-b3be-455a9987bd03
SIO_000300: 1
SIO_000628: feature:9671717-9671916:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11885252..11885451
location: region:11885252-11885451:1
BFO_0000051: feature:11885252-11885451:1:region
SIO_000974: 2bf8d1dc-8d44-41f5-96e8-96eaf6339b0d

position:11885252:1
position: 11885252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11885451:1
position: 11885451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2bf8d1dc-8d44-41f5-96e8-96eaf6339b0d
SIO_000300: 1
SIO_000628: feature:11885252-11885451:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16492014..16492213
location: region:16492014-16492213:1
BFO_0000051: feature:16492014-16492213:1:region
SIO_000974: d4ad7f86-32b8-4c82-82f0-737e8cf0b0ea

position:16492014:1
position: 16492014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16492213:1
position: 16492213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d4ad7f86-32b8-4c82-82f0-737e8cf0b0ea
SIO_000300: 1
SIO_000628: feature:16492014-16492213:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18153095..18153294
location: region:18153095-18153294:1
BFO_0000051: feature:18153095-18153294:1:region
SIO_000974: d7c79ebe-58ae-4b03-adf9-fd7072ea47e3

position:18153095:1
position: 18153095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18153294:1
position: 18153294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7c79ebe-58ae-4b03-adf9-fd7072ea47e3
SIO_000300: 1
SIO_000628: feature:18153095-18153294:1:region

Yponomeuta rorrellus genome assembly, chromosome: 14.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 14.
sequence version: OX371008.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 20097400
topology: linear
RO_0000086: SO_0000987
location: 1..20097400
location: region:1-20097400:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20097400:1
position: 20097400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20097400:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10293680..10293879
location: region:10293680-10293879:1
BFO_0000051: feature:10293680-10293879:1:region
SIO_000974: 2f0b08db-22a4-47f6-be5b-97865315bdd6

position:10293680:1
position: 10293680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10293879:1
position: 10293879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2f0b08db-22a4-47f6-be5b-97865315bdd6
SIO_000300: 1
SIO_000628: feature:10293680-10293879:1:region

Yponomeuta rorrellus genome assembly, chromosome: 15.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 15.
sequence version: OX371009.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19428809
topology: linear
RO_0000086: SO_0000987
location: 1..19428809
location: region:1-19428809:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19428809:1
position: 19428809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19428809:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2696674..2696873
location: region:2696674-2696873:1
BFO_0000051: feature:2696674-2696873:1:region
SIO_000974: 3b1898a7-8aea-4560-bbcd-13994468920d

position:2696674:1
position: 2696674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2696873:1
position: 2696873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b1898a7-8aea-4560-bbcd-13994468920d
SIO_000300: 1
SIO_000628: feature:2696674-2696873:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3244497..3244696
location: region:3244497-3244696:1
BFO_0000051: feature:3244497-3244696:1:region
SIO_000974: d7c870e7-0080-47d5-822d-d3ce7380ad28

position:3244497:1
position: 3244497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3244696:1
position: 3244696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7c870e7-0080-47d5-822d-d3ce7380ad28
SIO_000300: 1
SIO_000628: feature:3244497-3244696:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6455292..6455491
location: region:6455292-6455491:1
BFO_0000051: feature:6455292-6455491:1:region
SIO_000974: b9654e98-69ff-4963-b97e-2e3b4ed8149a

position:6455292:1
position: 6455292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6455491:1
position: 6455491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9654e98-69ff-4963-b97e-2e3b4ed8149a
SIO_000300: 1
SIO_000628: feature:6455292-6455491:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8154507..8154706
location: region:8154507-8154706:1
BFO_0000051: feature:8154507-8154706:1:region
SIO_000974: 089c694d-49ad-4629-8ad0-90cb57dacef5

position:8154507:1
position: 8154507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8154706:1
position: 8154706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

089c694d-49ad-4629-8ad0-90cb57dacef5
SIO_000300: 1
SIO_000628: feature:8154507-8154706:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9128774..9128973
location: region:9128774-9128973:1
BFO_0000051: feature:9128774-9128973:1:region
SIO_000974: 8837224f-3619-485e-ad26-1be9b8c45ba6

position:9128774:1
position: 9128774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9128973:1
position: 9128973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8837224f-3619-485e-ad26-1be9b8c45ba6
SIO_000300: 1
SIO_000628: feature:9128774-9128973:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14411974..14412173
location: region:14411974-14412173:1
BFO_0000051: feature:14411974-14412173:1:region
SIO_000974: 744a1219-48a1-4319-9bd9-0d30cb054c8d

position:14411974:1
position: 14411974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14412173:1
position: 14412173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

744a1219-48a1-4319-9bd9-0d30cb054c8d
SIO_000300: 1
SIO_000628: feature:14411974-14412173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15499174..15499373
location: region:15499174-15499373:1
BFO_0000051: feature:15499174-15499373:1:region
SIO_000974: cddfd3b5-b1e0-403f-820d-f05860a6b589

position:15499174:1
position: 15499174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15499373:1
position: 15499373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cddfd3b5-b1e0-403f-820d-f05860a6b589
SIO_000300: 1
SIO_000628: feature:15499174-15499373:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15632039..15632238
location: region:15632039-15632238:1
BFO_0000051: feature:15632039-15632238:1:region
SIO_000974: 25fd84ce-ac65-4731-941f-16b654f8dd24

position:15632039:1
position: 15632039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15632238:1
position: 15632238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

25fd84ce-ac65-4731-941f-16b654f8dd24
SIO_000300: 1
SIO_000628: feature:15632039-15632238:1:region

Yponomeuta rorrellus genome assembly, chromosome: 16.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 16.
sequence version: OX371010.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 19437463
topology: linear
RO_0000086: SO_0000987
location: 1..19437463
location: region:1-19437463:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19437463:1
position: 19437463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19437463:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16213991..16214190
location: region:16213991-16214190:1
BFO_0000051: feature:16213991-16214190:1:region
SIO_000974: 5092881c-7e9b-4083-9e82-ca1952ada84d

position:16213991:1
position: 16213991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16214190:1
position: 16214190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5092881c-7e9b-4083-9e82-ca1952ada84d
SIO_000300: 1
SIO_000628: feature:16213991-16214190:1:region

Yponomeuta rorrellus genome assembly, chromosome: 17.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 17.
sequence version: OX371011.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 18513131
topology: linear
RO_0000086: SO_0000987
location: 1..18513131
location: region:1-18513131:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18513131:1
position: 18513131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18513131:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2722992..2723191
location: region:2722992-2723191:1
BFO_0000051: feature:2722992-2723191:1:region
SIO_000974: d0744f79-a0b9-4fce-98c9-72c8bb036cbe

position:2722992:1
position: 2722992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2723191:1
position: 2723191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d0744f79-a0b9-4fce-98c9-72c8bb036cbe
SIO_000300: 1
SIO_000628: feature:2722992-2723191:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16325002..16325201
location: region:16325002-16325201:1
BFO_0000051: feature:16325002-16325201:1:region
SIO_000974: e37cd474-d075-41fb-83dd-ddc65f2edfd3

position:16325002:1
position: 16325002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16325201:1
position: 16325201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e37cd474-d075-41fb-83dd-ddc65f2edfd3
SIO_000300: 1
SIO_000628: feature:16325002-16325201:1:region

Yponomeuta rorrellus genome assembly, chromosome: 18.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 18.
sequence version: OX371012.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 18386885
topology: linear
RO_0000086: SO_0000987
location: 1..18386885
location: region:1-18386885:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18386885:1
position: 18386885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18386885:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6333998..6334197
location: region:6333998-6334197:1
BFO_0000051: feature:6333998-6334197:1:region
SIO_000974: 45f4f099-6a9b-4820-a282-abb4a74cf2b6

position:6333998:1
position: 6333998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6334197:1
position: 6334197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45f4f099-6a9b-4820-a282-abb4a74cf2b6
SIO_000300: 1
SIO_000628: feature:6333998-6334197:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10273920..10274119
location: region:10273920-10274119:1
BFO_0000051: feature:10273920-10274119:1:region
SIO_000974: 9972c777-1a66-4004-9452-888562bfa8f8

position:10273920:1
position: 10273920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10274119:1
position: 10274119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9972c777-1a66-4004-9452-888562bfa8f8
SIO_000300: 1
SIO_000628: feature:10273920-10274119:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12357218..12357417
location: region:12357218-12357417:1
BFO_0000051: feature:12357218-12357417:1:region
SIO_000974: 60684c67-0b4c-4785-9e3f-d395764f84c4

position:12357218:1
position: 12357218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12357417:1
position: 12357417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60684c67-0b4c-4785-9e3f-d395764f84c4
SIO_000300: 1
SIO_000628: feature:12357218-12357417:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16023345..16023544
location: region:16023345-16023544:1
BFO_0000051: feature:16023345-16023544:1:region
SIO_000974: ff258ca2-a7da-4771-bf20-099437acfd3e

position:16023345:1
position: 16023345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16023544:1
position: 16023544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff258ca2-a7da-4771-bf20-099437acfd3e
SIO_000300: 1
SIO_000628: feature:16023345-16023544:1:region

Yponomeuta rorrellus genome assembly, chromosome: 19.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 19.
sequence version: OX371013.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 18511251
topology: linear
RO_0000086: SO_0000987
location: 1..18511251
location: region:1-18511251:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18511251:1
position: 18511251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18511251:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13971645..13971844
location: region:13971645-13971844:1
BFO_0000051: feature:13971645-13971844:1:region
SIO_000974: 13986e8d-9625-4ece-ad8e-1d989ac45130

position:13971645:1
position: 13971645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13971844:1
position: 13971844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

13986e8d-9625-4ece-ad8e-1d989ac45130
SIO_000300: 1
SIO_000628: feature:13971645-13971844:1:region

Yponomeuta rorrellus genome assembly, chromosome: 20.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 20.
sequence version: OX371014.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 18194485
topology: linear
RO_0000086: SO_0000987
location: 1..18194485
location: region:1-18194485:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18194485:1
position: 18194485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18194485:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8002001..8002200
location: region:8002001-8002200:1
BFO_0000051: feature:8002001-8002200:1:region
SIO_000974: 766492e1-1d7e-476c-80d7-edfe63a1635f

position:8002001:1
position: 8002001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8002200:1
position: 8002200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

766492e1-1d7e-476c-80d7-edfe63a1635f
SIO_000300: 1
SIO_000628: feature:8002001-8002200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9482452..9482651
location: region:9482452-9482651:1
BFO_0000051: feature:9482452-9482651:1:region
SIO_000974: 386d3886-23fc-4cf9-955d-29f3657c654c

position:9482452:1
position: 9482452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9482651:1
position: 9482651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

386d3886-23fc-4cf9-955d-29f3657c654c
SIO_000300: 1
SIO_000628: feature:9482452-9482651:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13698807..13699006
location: region:13698807-13699006:1
BFO_0000051: feature:13698807-13699006:1:region
SIO_000974: 9a7e52ec-4b8b-43f3-8d02-cf12f32b5828

position:13698807:1
position: 13698807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13699006:1
position: 13699006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a7e52ec-4b8b-43f3-8d02-cf12f32b5828
SIO_000300: 1
SIO_000628: feature:13698807-13699006:1:region

Yponomeuta rorrellus genome assembly, chromosome: 21.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 21.
sequence version: OX371015.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 16310697
topology: linear
RO_0000086: SO_0000987
location: 1..16310697
location: region:1-16310697:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16310697:1
position: 16310697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16310697:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 322736..322935
location: region:322736-322935:1
BFO_0000051: feature:322736-322935:1:region
SIO_000974: 3d506199-85c5-4e8b-958c-6b2bf03dd1e3

position:322736:1
position: 322736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322935:1
position: 322935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d506199-85c5-4e8b-958c-6b2bf03dd1e3
SIO_000300: 1
SIO_000628: feature:322736-322935:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 663970..664169
location: region:663970-664169:1
BFO_0000051: feature:663970-664169:1:region
SIO_000974: 56bbfa62-5492-45ee-a24b-3b6ddeca21f3

position:663970:1
position: 663970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664169:1
position: 664169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56bbfa62-5492-45ee-a24b-3b6ddeca21f3
SIO_000300: 1
SIO_000628: feature:663970-664169:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3459081..3459280
location: region:3459081-3459280:1
BFO_0000051: feature:3459081-3459280:1:region
SIO_000974: 4c6c6c32-4522-4780-b0a6-ef86cccf7e71

position:3459081:1
position: 3459081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3459280:1
position: 3459280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c6c6c32-4522-4780-b0a6-ef86cccf7e71
SIO_000300: 1
SIO_000628: feature:3459081-3459280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5680818..5681017
location: region:5680818-5681017:1
BFO_0000051: feature:5680818-5681017:1:region
SIO_000974: be33af1a-5427-4c39-ae78-e324b36dca05

position:5680818:1
position: 5680818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5681017:1
position: 5681017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be33af1a-5427-4c39-ae78-e324b36dca05
SIO_000300: 1
SIO_000628: feature:5680818-5681017:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11161028..11161227
location: region:11161028-11161227:1
BFO_0000051: feature:11161028-11161227:1:region
SIO_000974: 18524d7f-d0f7-47ca-bb21-3cb700211db8

position:11161028:1
position: 11161028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11161227:1
position: 11161227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18524d7f-d0f7-47ca-bb21-3cb700211db8
SIO_000300: 1
SIO_000628: feature:11161028-11161227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13002925..13003124
location: region:13002925-13003124:1
BFO_0000051: feature:13002925-13003124:1:region
SIO_000974: 415fe0c8-6d39-4e42-93b8-2b36cbee163f

position:13002925:1
position: 13002925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13003124:1
position: 13003124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

415fe0c8-6d39-4e42-93b8-2b36cbee163f
SIO_000300: 1
SIO_000628: feature:13002925-13003124:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15453648..15453847
location: region:15453648-15453847:1
BFO_0000051: feature:15453648-15453847:1:region
SIO_000974: f544eb81-35da-4970-ab2f-a51cabf3eca0

position:15453648:1
position: 15453648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15453847:1
position: 15453847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f544eb81-35da-4970-ab2f-a51cabf3eca0
SIO_000300: 1
SIO_000628: feature:15453648-15453847:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15562564..15562763
location: region:15562564-15562763:1
BFO_0000051: feature:15562564-15562763:1:region
SIO_000974: b91a8f34-2230-433a-a709-8d81ca68da3a

position:15562564:1
position: 15562564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15562763:1
position: 15562763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b91a8f34-2230-433a-a709-8d81ca68da3a
SIO_000300: 1
SIO_000628: feature:15562564-15562763:1:region

Yponomeuta rorrellus genome assembly, chromosome: 22.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 22.
sequence version: OX371016.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 14527508
topology: linear
RO_0000086: SO_0000987
location: 1..14527508
location: region:1-14527508:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14527508:1
position: 14527508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14527508:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4739259..4739458
location: region:4739259-4739458:1
BFO_0000051: feature:4739259-4739458:1:region
SIO_000974: 0034011c-50e6-4d42-9560-a404f3b9196f

position:4739259:1
position: 4739259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4739458:1
position: 4739458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0034011c-50e6-4d42-9560-a404f3b9196f
SIO_000300: 1
SIO_000628: feature:4739259-4739458:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7809108..7809307
location: region:7809108-7809307:1
BFO_0000051: feature:7809108-7809307:1:region
SIO_000974: 6d400126-9e33-4774-bc19-6aec4c41475f

position:7809108:1
position: 7809108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7809307:1
position: 7809307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d400126-9e33-4774-bc19-6aec4c41475f
SIO_000300: 1
SIO_000628: feature:7809108-7809307:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8042167..8042366
location: region:8042167-8042366:1
BFO_0000051: feature:8042167-8042366:1:region
SIO_000974: b993c798-4e55-41a4-b7ce-708d8930034b

position:8042167:1
position: 8042167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8042366:1
position: 8042366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b993c798-4e55-41a4-b7ce-708d8930034b
SIO_000300: 1
SIO_000628: feature:8042167-8042366:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10577309..10577508
location: region:10577309-10577508:1
BFO_0000051: feature:10577309-10577508:1:region
SIO_000974: c8913e58-640d-42e8-a73f-70bb2f481fcc

position:10577309:1
position: 10577309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10577508:1
position: 10577508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8913e58-640d-42e8-a73f-70bb2f481fcc
SIO_000300: 1
SIO_000628: feature:10577309-10577508:1:region

Yponomeuta rorrellus genome assembly, chromosome: 23.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 23.
sequence version: OX371017.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 14764630
topology: linear
RO_0000086: SO_0000987
location: 1..14764630
location: region:1-14764630:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14764630:1
position: 14764630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14764630:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6463001..6463200
location: region:6463001-6463200:1
BFO_0000051: feature:6463001-6463200:1:region
SIO_000974: d2faa600-6550-4b12-ac98-27e1d63bb915

position:6463001:1
position: 6463001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6463200:1
position: 6463200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d2faa600-6550-4b12-ac98-27e1d63bb915
SIO_000300: 1
SIO_000628: feature:6463001-6463200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12418126..12418325
location: region:12418126-12418325:1
BFO_0000051: feature:12418126-12418325:1:region
SIO_000974: 1e227ec3-0dff-4718-8799-0c4371035d7e

position:12418126:1
position: 12418126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12418325:1
position: 12418325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1e227ec3-0dff-4718-8799-0c4371035d7e
SIO_000300: 1
SIO_000628: feature:12418126-12418325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14434063..14434262
location: region:14434063-14434262:1
BFO_0000051: feature:14434063-14434262:1:region
SIO_000974: 24f6108c-72f4-421a-94e2-ffbc2caf0a11

position:14434063:1
position: 14434063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14434262:1
position: 14434262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24f6108c-72f4-421a-94e2-ffbc2caf0a11
SIO_000300: 1
SIO_000628: feature:14434063-14434262:1:region

Yponomeuta rorrellus genome assembly, chromosome: 24.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 24.
sequence version: OX371018.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 14237095
topology: linear
RO_0000086: SO_0000987
location: 1..14237095
location: region:1-14237095:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14237095:1
position: 14237095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14237095:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1907570..1907769
location: region:1907570-1907769:1
BFO_0000051: feature:1907570-1907769:1:region
SIO_000974: 54fce364-3d92-4f56-bcf3-500238eb5899

position:1907570:1
position: 1907570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907769:1
position: 1907769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

54fce364-3d92-4f56-bcf3-500238eb5899
SIO_000300: 1
SIO_000628: feature:1907570-1907769:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3727476..3727675
location: region:3727476-3727675:1
BFO_0000051: feature:3727476-3727675:1:region
SIO_000974: 5097ae0b-6df5-45bb-89bd-a5a66214dc42

position:3727476:1
position: 3727476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3727675:1
position: 3727675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5097ae0b-6df5-45bb-89bd-a5a66214dc42
SIO_000300: 1
SIO_000628: feature:3727476-3727675:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6825569..6825768
location: region:6825569-6825768:1
BFO_0000051: feature:6825569-6825768:1:region
SIO_000974: b7770489-99a7-4cdb-b670-66c7b19b380d

position:6825569:1
position: 6825569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6825768:1
position: 6825768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7770489-99a7-4cdb-b670-66c7b19b380d
SIO_000300: 1
SIO_000628: feature:6825569-6825768:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12097875..12098074
location: region:12097875-12098074:1
BFO_0000051: feature:12097875-12098074:1:region
SIO_000974: 92e22670-8801-497e-8b2e-f76c262e8415

position:12097875:1
position: 12097875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12098074:1
position: 12098074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92e22670-8801-497e-8b2e-f76c262e8415
SIO_000300: 1
SIO_000628: feature:12097875-12098074:1:region

Yponomeuta rorrellus genome assembly, chromosome: 25.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 25.
sequence version: OX371019.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 13135262
topology: linear
RO_0000086: SO_0000987
location: 1..13135262
location: region:1-13135262:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13135262:1
position: 13135262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13135262:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9028641..9028840
location: region:9028641-9028840:1
BFO_0000051: feature:9028641-9028840:1:region
SIO_000974: 82b08b22-5835-4882-bab3-cd223c520950

position:9028641:1
position: 9028641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9028840:1
position: 9028840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82b08b22-5835-4882-bab3-cd223c520950
SIO_000300: 1
SIO_000628: feature:9028641-9028840:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10356143..10356342
location: region:10356143-10356342:1
BFO_0000051: feature:10356143-10356342:1:region
SIO_000974: f4b23257-6444-4975-8115-d83f11f93a42

position:10356143:1
position: 10356143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10356342:1
position: 10356342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f4b23257-6444-4975-8115-d83f11f93a42
SIO_000300: 1
SIO_000628: feature:10356143-10356342:1:region

Yponomeuta rorrellus genome assembly, chromosome: 26.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 26.
sequence version: OX371020.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 11902164
topology: linear
RO_0000086: SO_0000987
location: 1..11902164
location: region:1-11902164:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11902164:1
position: 11902164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11902164:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4760182..4760381
location: region:4760182-4760381:1
BFO_0000051: feature:4760182-4760381:1:region
SIO_000974: 16db66e9-d972-4fd2-b5d7-8bcce07f48b6

position:4760182:1
position: 4760182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4760381:1
position: 4760381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16db66e9-d972-4fd2-b5d7-8bcce07f48b6
SIO_000300: 1
SIO_000628: feature:4760182-4760381:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6264194..6264393
location: region:6264194-6264393:1
BFO_0000051: feature:6264194-6264393:1:region
SIO_000974: d8fde189-119e-4385-aa3c-66d2f1cf355d

position:6264194:1
position: 6264194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6264393:1
position: 6264393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d8fde189-119e-4385-aa3c-66d2f1cf355d
SIO_000300: 1
SIO_000628: feature:6264194-6264393:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10957965..10958164
location: region:10957965-10958164:1
BFO_0000051: feature:10957965-10958164:1:region
SIO_000974: 6fb46e4f-62ee-4e91-8953-a77f41219d3e

position:10957965:1
position: 10957965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10958164:1
position: 10958164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fb46e4f-62ee-4e91-8953-a77f41219d3e
SIO_000300: 1
SIO_000628: feature:10957965-10958164:1:region

Yponomeuta rorrellus genome assembly, chromosome: 27Z.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 27Z.
sequence version: OX371021.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 10295326
topology: linear
RO_0000086: SO_0000987
location: 1..10295326
location: region:1-10295326:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10295326:1
position: 10295326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10295326:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 27Z
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1288144..1288343
location: region:1288144-1288343:1
BFO_0000051: feature:1288144-1288343:1:region
SIO_000974: d66407dc-ef2f-464e-b196-c7918fe4f266

position:1288144:1
position: 1288144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1288343:1
position: 1288343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d66407dc-ef2f-464e-b196-c7918fe4f266
SIO_000300: 1
SIO_000628: feature:1288144-1288343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2704344..2704543
location: region:2704344-2704543:1
BFO_0000051: feature:2704344-2704543:1:region
SIO_000974: fd32d8e7-7ff6-44d1-8186-2c0d7edee32c

position:2704344:1
position: 2704344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2704543:1
position: 2704543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd32d8e7-7ff6-44d1-8186-2c0d7edee32c
SIO_000300: 1
SIO_000628: feature:2704344-2704543:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2907124..2907323
location: region:2907124-2907323:1
BFO_0000051: feature:2907124-2907323:1:region
SIO_000974: 07d24d3f-1022-4fb0-a0ad-3b9daeb0fcd8

position:2907124:1
position: 2907124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2907323:1
position: 2907323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07d24d3f-1022-4fb0-a0ad-3b9daeb0fcd8
SIO_000300: 1
SIO_000628: feature:2907124-2907323:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3210009..3210208
location: region:3210009-3210208:1
BFO_0000051: feature:3210009-3210208:1:region
SIO_000974: b991c59f-0e0e-4d15-8bf7-61f969cde9ed

position:3210009:1
position: 3210009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3210208:1
position: 3210208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b991c59f-0e0e-4d15-8bf7-61f969cde9ed
SIO_000300: 1
SIO_000628: feature:3210009-3210208:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4060065..4060264
location: region:4060065-4060264:1
BFO_0000051: feature:4060065-4060264:1:region
SIO_000974: d107279c-a2ae-4301-b02e-9dd6d9d1c7c1

position:4060065:1
position: 4060065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4060264:1
position: 4060264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d107279c-a2ae-4301-b02e-9dd6d9d1c7c1
SIO_000300: 1
SIO_000628: feature:4060065-4060264:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4721846..4722045
location: region:4721846-4722045:1
BFO_0000051: feature:4721846-4722045:1:region
SIO_000974: a4aa5e53-bae8-45cf-b3a3-ce7711347de0

position:4721846:1
position: 4721846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4722045:1
position: 4722045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4aa5e53-bae8-45cf-b3a3-ce7711347de0
SIO_000300: 1
SIO_000628: feature:4721846-4722045:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6066371..6066570
location: region:6066371-6066570:1
BFO_0000051: feature:6066371-6066570:1:region
SIO_000974: 05217d20-5bf1-4ab0-8e94-24f3c022faa7

position:6066371:1
position: 6066371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6066570:1
position: 6066570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05217d20-5bf1-4ab0-8e94-24f3c022faa7
SIO_000300: 1
SIO_000628: feature:6066371-6066570:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8372562..8372761
location: region:8372562-8372761:1
BFO_0000051: feature:8372562-8372761:1:region
SIO_000974: 6bd56a4b-2cd7-4668-9855-7d248d5a4cf1

position:8372562:1
position: 8372562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8372761:1
position: 8372761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bd56a4b-2cd7-4668-9855-7d248d5a4cf1
SIO_000300: 1
SIO_000628: feature:8372562-8372761:1:region

Yponomeuta rorrellus genome assembly, chromosome: 28.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 28.
sequence version: OX371022.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 8877743
topology: linear
RO_0000086: SO_0000987
location: 1..8877743
location: region:1-8877743:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8877743:1
position: 8877743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8877743:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6158951..6159150
location: region:6158951-6159150:1
BFO_0000051: feature:6158951-6159150:1:region
SIO_000974: 73f01dba-7aea-4ed3-a4c8-0dce89ca7b76

position:6158951:1
position: 6158951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6159150:1
position: 6159150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73f01dba-7aea-4ed3-a4c8-0dce89ca7b76
SIO_000300: 1
SIO_000628: feature:6158951-6159150:1:region

Yponomeuta rorrellus genome assembly, chromosome: 29.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 29.
sequence version: OX371023.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 8302539
topology: linear
RO_0000086: SO_0000987
location: 1..8302539
location: region:1-8302539:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8302539:1
position: 8302539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8302539:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 29
mol type: genomic DNA

Yponomeuta rorrellus genome assembly, chromosome: W.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: W.
sequence version: OX371024.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 1842483
topology: linear
RO_0000086: SO_0000987
location: 1..1842483
location: region:1-1842483:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1842483:1
position: 1842483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1842483:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 851743..851942
location: region:851743-851942:1
BFO_0000051: feature:851743-851942:1:region
SIO_000974: c97ff44c-5972-4512-921d-18e2597c605a

position:851743:1
position: 851743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:851942:1
position: 851942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c97ff44c-5972-4512-921d-18e2597c605a
SIO_000300: 1
SIO_000628: feature:851743-851942:1:region

Yponomeuta rorrellus genome assembly, chromosome: 30.
type: Entry
definition: Yponomeuta rorrellus genome assembly, chromosome: 30.
sequence version: OX371025.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 9052916
topology: linear
RO_0000086: SO_0000987
location: 1..9052916
location: region:1-9052916:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9052916:1
position: 9052916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9052916:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2663629..2663828
location: region:2663629-2663828:1
BFO_0000051: feature:2663629-2663828:1:region
SIO_000974: 3b3c9a5b-13a2-44d7-b870-1630207fdd91

position:2663629:1
position: 2663629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2663828:1
position: 2663828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3b3c9a5b-13a2-44d7-b870-1630207fdd91
SIO_000300: 1
SIO_000628: feature:2663629-2663828:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 263928
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6007857..6008056
location: region:6007857-6008056:1
BFO_0000051: feature:6007857-6008056:1:region
SIO_000974: 3e76a855-0f66-4a40-8d52-cc097d11d147

position:6007857:1
position: 6007857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6008056:1
position: 6008056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e76a855-0f66-4a40-8d52-cc097d11d147
SIO_000300: 1
SIO_000628: feature:6007857-6008056:1:region

Yponomeuta rorrellus genome assembly, organelle: mitochondrion.
type: Entry
definition: Yponomeuta rorrellus genome assembly, organelle: mitochondrion.
sequence version: OX371026.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: mitochondrion Yponomeuta rorrellus (willow ermine moth)
organism: Yponomeuta rorrellus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.
reference: 1
comment: The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

sequence
subclass of: SO_0000001
sequence length: 16338
topology: linear
RO_0000086: SO_0000987
location: 1..16338
location: region:1-16338:1
RO_0002162: 263928

1
journal: Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16338:1
position: 16338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16338:1:source
BFO_0000050: sequence
organism: Yponomeuta rorrellus
organelle: mitochondrion
mol type: genomic DNA

Leptodirus hochenwarti genome assembly, chromosome: 1.
type: Entry
definition: Leptodirus hochenwarti genome assembly, chromosome: 1.
sequence version: OX371176.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Leptodirus hochenwarti
organism: Leptodirus hochenwarti
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Leiodidae; Cholevinae; Leptodirus.
reference: 1
comment: The assembly icLepHoch12.1 is based on 47x PacBio data and Arima2\nHi-C data\ngenerated by the Wellcome Sanger Institute Tree of Life Programme\n(https://www.sanger.ac.uk/programme/tree-of-life/) as part of the\nEuropean\nReference Genome Atlas pilot project\n(https://www.erga-biodiversity.eu/pilot-project). The assembly\nprocess\nincluded the following sequence of steps: initial PacBio assembly\ngeneration with Hifiasm, retained haplotig separation with\npurge_dups, and\nHi-C based scaffolding with YaHS. The mitochondrial genome was\nassembled\nusing MitoHiFi. Finally, the primary assembly was analysed and\nmanually\nimproved using rapid curation. This alternate haplotype assembly\ncombines\nthe haplotigs separated by purge_dups with haplotigs separated from\nthe\nprimary assembly during curation. Due to the repetitive nature of\nthe\nsequence the order and orientation of scaffolds in the following\nregions\nare unsure: Chromosome 1 ~14.10-29.54Mb, Chromosome 2\n~19.21-24.26Mb,\nChromosome 3 ~18.39-26.05, Chromosome 4 ~16.28-26.44Mb, Chromosome\n5\n~17.23-24.40Mb, Chromosome 6 ~9.90-22.38Mb, Chromosome 7\n~16.55-33.23Mb,\nChromosome 8 ~17.79-35.15Mb, Chromosome 9 ~16.21-27.67Mb,\nChromosome 10\n~12.84-24.02Mb, Chromosome 11 ~8.29-18.51Mb, Chromosome 12\n~11.79-15.64Mb.

sequence
subclass of: SO_0000001
sequence length: 51371384
topology: linear
RO_0000086: SO_0000987
location: 1..51371384
location: region:1-51371384:1
RO_0002162: 1457097

1
journal: Submitted (09-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51371384:1
position: 51371384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-51371384:1:source
BFO_0000050: sequence
organism: Leptodirus hochenwarti
chromosome: 1
mol type: genomic DNA

1457097
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 688133..688332
location: region:688133-688332:1
BFO_0000051: feature:688133-688332:1:region
SIO_000974: 543adb2f-a4ef-4a6b-a6d3-bd0dd0067902

position:688133:1
position: 688133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:688332:1
position: 688332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

543adb2f-a4ef-4a6b-a6d3-bd0dd0067902
SIO_000300: 1
SIO_000628: feature:688133-688332:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1522169..1522368
location: region:1522169-1522368:1
BFO_0000051: feature:1522169-1522368:1:region
SIO_000974: ee59dc35-a9a4-4cf8-bf77-0562ed95e244

position:1522169:1
position: 1522169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1522368:1
position: 1522368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee59dc35-a9a4-4cf8-bf77-0562ed95e244
SIO_000300: 1
SIO_000628: feature:1522169-1522368:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1573942..1574141
location: region:1573942-1574141:1
BFO_0000051: feature:1573942-1574141:1:region
SIO_000974: 8ec57662-6480-4244-aa30-bef61eff8ab4

position:1573942:1
position: 1573942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1574141:1
position: 1574141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ec57662-6480-4244-aa30-bef61eff8ab4
SIO_000300: 1
SIO_000628: feature:1573942-1574141:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3168794..3168993
location: region:3168794-3168993:1
BFO_0000051: feature:3168794-3168993:1:region
SIO_000974: 8b0edbe6-dd95-432a-bc47-9362c534acb5

position:3168794:1
position: 3168794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3168993:1
position: 3168993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8b0edbe6-dd95-432a-bc47-9362c534acb5
SIO_000300: 1
SIO_000628: feature:3168794-3168993:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8349642..8349841
location: region:8349642-8349841:1
BFO_0000051: feature:8349642-8349841:1:region
SIO_000974: a5a80515-39a4-450f-8066-902604b3a1c6

position:8349642:1
position: 8349642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8349841:1
position: 8349841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5a80515-39a4-450f-8066-902604b3a1c6
SIO_000300: 1
SIO_000628: feature:8349642-8349841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9909849..9910048
location: region:9909849-9910048:1
BFO_0000051: feature:9909849-9910048:1:region
SIO_000974: d896f5a7-37cb-4a45-8027-b7954a22a9f0

position:9909849:1
position: 9909849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9910048:1
position: 9910048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d896f5a7-37cb-4a45-8027-b7954a22a9f0
SIO_000300: 1
SIO_000628: feature:9909849-9910048:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11992625..11992824
location: region:11992625-11992824:1
BFO_0000051: feature:11992625-11992824:1:region
SIO_000974: 7de3427a-9243-4361-8bbb-c43b4faed9e5

position:11992625:1
position: 11992625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11992824:1
position: 11992824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7de3427a-9243-4361-8bbb-c43b4faed9e5
SIO_000300: 1
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assembly_gap
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:15257625-15257824:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:15771720-15771919:1:region
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SIO_000300: 1
SIO_000628: feature:15771720-15771919:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:16925475-16925674:1:region
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SIO_000300: 1
SIO_000628: feature:16925475-16925674:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:18322875-18323074:1:region
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SIO_000300: 1
SIO_000628: feature:18322875-18323074:1:region

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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000051: feature:18891275-18891474:1:region
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SIO_000300: 1
SIO_000628: feature:18891275-18891474:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:18970092-18970291:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:19183292-19183491:1:region
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SIO_000300: 1
SIO_000628: feature:19183292-19183491:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:19563492-19563691:1:region
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SIO_000300: 1
SIO_000628: feature:19563492-19563691:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000628: feature:20218396-20218595:1:region

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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:20512596-20512795:1:region

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BFO_0000050: sequence
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SIO_000628: feature:21311796-21311995:1:region

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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39893724:1
position: 39893724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3dcd78a7-940f-4533-821d-e3c51ca4e519
SIO_000300: 1
SIO_000628: feature:39893525-39893724:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42074482..42074681
location: region:42074482-42074681:1
BFO_0000051: feature:42074482-42074681:1:region
SIO_000974: fc278e62-8f77-4daf-ae50-fecc25172be6

position:42074482:1
position: 42074482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42074681:1
position: 42074681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc278e62-8f77-4daf-ae50-fecc25172be6
SIO_000300: 1
SIO_000628: feature:42074482-42074681:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42748276..42748475
location: region:42748276-42748475:1
BFO_0000051: feature:42748276-42748475:1:region
SIO_000974: ae0d313a-326e-4db5-b106-01a4090fec03

position:42748276:1
position: 42748276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42748475:1
position: 42748475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae0d313a-326e-4db5-b106-01a4090fec03
SIO_000300: 1
SIO_000628: feature:42748276-42748475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45485550..45485749
location: region:45485550-45485749:1
BFO_0000051: feature:45485550-45485749:1:region
SIO_000974: 91baa80b-b3f7-4fa6-993e-3f9c9b92477f

position:45485550:1
position: 45485550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45485749:1
position: 45485749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

91baa80b-b3f7-4fa6-993e-3f9c9b92477f
SIO_000300: 1
SIO_000628: feature:45485550-45485749:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46115999..46116198
location: region:46115999-46116198:1
BFO_0000051: feature:46115999-46116198:1:region
SIO_000974: f150b4bc-cf76-4e3c-9f4f-ec7741ed2751

position:46115999:1
position: 46115999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46116198:1
position: 46116198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f150b4bc-cf76-4e3c-9f4f-ec7741ed2751
SIO_000300: 1
SIO_000628: feature:46115999-46116198:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47653954..47654153
location: region:47653954-47654153:1
BFO_0000051: feature:47653954-47654153:1:region
SIO_000974: 006f441c-9145-464d-b640-01bc260508db

position:47653954:1
position: 47653954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47654153:1
position: 47654153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

006f441c-9145-464d-b640-01bc260508db
SIO_000300: 1
SIO_000628: feature:47653954-47654153:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49008367..49008566
location: region:49008367-49008566:1
BFO_0000051: feature:49008367-49008566:1:region
SIO_000974: fd001ec3-5e00-4dcf-ae84-9280c84f17d3

position:49008367:1
position: 49008367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49008566:1
position: 49008566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd001ec3-5e00-4dcf-ae84-9280c84f17d3
SIO_000300: 1
SIO_000628: feature:49008367-49008566:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49589249..49589448
location: region:49589249-49589448:1
BFO_0000051: feature:49589249-49589448:1:region
SIO_000974: 9fd6cce4-097b-4322-9188-4880c0ec2309

position:49589249:1
position: 49589249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49589448:1
position: 49589448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9fd6cce4-097b-4322-9188-4880c0ec2309
SIO_000300: 1
SIO_000628: feature:49589249-49589448:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51010573..51010772
location: region:51010573-51010772:1
BFO_0000051: feature:51010573-51010772:1:region
SIO_000974: 31051ce5-d46d-4f27-9bde-e417768ae7f6

position:51010573:1
position: 51010573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51010772:1
position: 51010772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31051ce5-d46d-4f27-9bde-e417768ae7f6
SIO_000300: 1
SIO_000628: feature:51010573-51010772:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51094229..51094428
location: region:51094229-51094428:1
BFO_0000051: feature:51094229-51094428:1:region
SIO_000974: 2d293472-7b64-4be8-a683-c483acef9d58

position:51094229:1
position: 51094229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51094428:1
position: 51094428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d293472-7b64-4be8-a683-c483acef9d58
SIO_000300: 1
SIO_000628: feature:51094229-51094428:1:region

Leptodirus hochenwarti genome assembly, chromosome: 2.
type: Entry
definition: Leptodirus hochenwarti genome assembly, chromosome: 2.
sequence version: OX371177.1
sequence date: 2022-11-16
sequence: sequence
division: INV
source: Leptodirus hochenwarti
organism: Leptodirus hochenwarti
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Leiodidae; Cholevinae; Leptodirus.
reference: 1
comment: The assembly icLepHoch12.1 is based on 47x PacBio data and Arima2\nHi-C data\ngenerated by the Wellcome Sanger Institute Tree of Life Programme\n(https://www.sanger.ac.uk/programme/tree-of-life/) as part of the\nEuropean\nReference Genome Atlas pilot project\n(https://www.erga-biodiversity.eu/pilot-project). The assembly\nprocess\nincluded the following sequence of steps: initial PacBio assembly\ngeneration with Hifiasm, retained haplotig separation with\npurge_dups, and\nHi-C based scaffolding with YaHS. The mitochondrial genome was\nassembled\nusing MitoHiFi. Finally, the primary assembly was analysed and\nmanually\nimproved using rapid curation. This alternate haplotype assembly\ncombines\nthe haplotigs separated by purge_dups with haplotigs separated from\nthe\nprimary assembly during curation. Due to the repetitive nature of\nthe\nsequence the order and orientation of scaffolds in the following\nregions\nare unsure: Chromosome 1 ~14.10-29.54Mb, Chromosome 2\n~19.21-24.26Mb,\nChromosome 3 ~18.39-26.05, Chromosome 4 ~16.28-26.44Mb, Chromosome\n5\n~17.23-24.40Mb, Chromosome 6 ~9.90-22.38Mb, Chromosome 7\n~16.55-33.23Mb,\nChromosome 8 ~17.79-35.15Mb, Chromosome 9 ~16.21-27.67Mb,\nChromosome 10\n~12.84-24.02Mb, Chromosome 11 ~8.29-18.51Mb, Chromosome 12\n~11.79-15.64Mb.

sequence
subclass of: SO_0000001
sequence length: 49640454
topology: linear
RO_0000086: SO_0000987
location: 1..49640454
location: region:1-49640454:1
RO_0002162: 1457097

1
journal: Submitted (09-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49640454:1
position: 49640454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-49640454:1:source
BFO_0000050: sequence
organism: Leptodirus hochenwarti
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1783143..1783342
location: region:1783143-1783342:1
BFO_0000051: feature:1783143-1783342:1:region
SIO_000974: 53104a69-1c20-4d82-93d0-5e819ac9bbf9

position:1783143:1
position: 1783143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1783342:1
position: 1783342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53104a69-1c20-4d82-93d0-5e819ac9bbf9
SIO_000300: 1
SIO_000628: feature:1783143-1783342:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2926640..2926839
location: region:2926640-2926839:1
BFO_0000051: feature:2926640-2926839:1:region
SIO_000974: 935e7a5a-e95c-40c5-850b-bee05e04bb4f

position:2926640:1
position: 2926640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2926839:1
position: 2926839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

935e7a5a-e95c-40c5-850b-bee05e04bb4f
SIO_000300: 1
SIO_000628: feature:2926640-2926839:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19299840..19300039
location: region:19299840-19300039:1
BFO_0000051: feature:19299840-19300039:1:region
SIO_000974: b8382f29-6261-45ba-8ae1-f962b3209244

position:19299840:1
position: 19299840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19300039:1
position: 19300039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8382f29-6261-45ba-8ae1-f962b3209244
SIO_000300: 1
SIO_000628: feature:19299840-19300039:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19397040..19397239
location: region:19397040-19397239:1
BFO_0000051: feature:19397040-19397239:1:region
SIO_000974: 9417a7b8-5aff-4ce0-a209-2176c76c9e96

position:19397040:1
position: 19397040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19397239:1
position: 19397239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9417a7b8-5aff-4ce0-a209-2176c76c9e96
SIO_000300: 1
SIO_000628: feature:19397040-19397239:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19754240..19754439
location: region:19754240-19754439:1
BFO_0000051: feature:19754240-19754439:1:region
SIO_000974: 0cfc063a-26fc-481e-80f9-e2c5189a53c5

position:19754240:1
position: 19754240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19754439:1
position: 19754439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0cfc063a-26fc-481e-80f9-e2c5189a53c5
SIO_000300: 1
SIO_000628: feature:19754240-19754439:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20124256..20124455
location: region:20124256-20124455:1
BFO_0000051: feature:20124256-20124455:1:region
SIO_000974: d85d4286-6880-477f-8bcb-d82139776582

position:20124256:1
position: 20124256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20124455:1
position: 20124455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d85d4286-6880-477f-8bcb-d82139776582
SIO_000300: 1
SIO_000628: feature:20124256-20124455:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20369456..20369655
location: region:20369456-20369655:1
BFO_0000051: feature:20369456-20369655:1:region
SIO_000974: 8bddf573-b61f-4095-9556-86c29d5b2029

position:20369456:1
position: 20369456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20369655:1
position: 20369655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bddf573-b61f-4095-9556-86c29d5b2029
SIO_000300: 1
SIO_000628: feature:20369456-20369655:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20550656..20550855
location: region:20550656-20550855:1
BFO_0000051: feature:20550656-20550855:1:region
SIO_000974: d5672a7a-63ad-45ca-a6e8-22bc60b82aee

position:20550656:1
position: 20550656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20550855:1
position: 20550855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d5672a7a-63ad-45ca-a6e8-22bc60b82aee
SIO_000300: 1
SIO_000628: feature:20550656-20550855:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20909748..20909947
location: region:20909748-20909947:1
BFO_0000051: feature:20909748-20909947:1:region
SIO_000974: ba3cbcf3-63d3-4bda-9b71-1a12b8421871

position:20909748:1
position: 20909748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20909947:1
position: 20909947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba3cbcf3-63d3-4bda-9b71-1a12b8421871
SIO_000300: 1
SIO_000628: feature:20909748-20909947:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21287977..21288176
location: region:21287977-21288176:1
BFO_0000051: feature:21287977-21288176:1:region
SIO_000974: 32ffb285-c453-4497-ae0c-2209b97bd964

position:21287977:1
position: 21287977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21288176:1
position: 21288176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32ffb285-c453-4497-ae0c-2209b97bd964
SIO_000300: 1
SIO_000628: feature:21287977-21288176:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21917177..21917376
location: region:21917177-21917376:1
BFO_0000051: feature:21917177-21917376:1:region
SIO_000974: ac393abf-b1be-40b7-984e-2420cae858d7

position:21917177:1
position: 21917177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21917376:1
position: 21917376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac393abf-b1be-40b7-984e-2420cae858d7
SIO_000300: 1
SIO_000628: feature:21917177-21917376:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22834377..22834576
location: region:22834377-22834576:1
BFO_0000051: feature:22834377-22834576:1:region
SIO_000974: 065bdc1a-3d44-4c58-821e-59aeb897de8c

position:22834377:1
position: 22834377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22834576:1
position: 22834576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

065bdc1a-3d44-4c58-821e-59aeb897de8c
SIO_000300: 1
SIO_000628: feature:22834377-22834576:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23682577..23682776
location: region:23682577-23682776:1
BFO_0000051: feature:23682577-23682776:1:region
SIO_000974: 8e4585c6-ea83-4953-9593-f8d303afd563

position:23682577:1
position: 23682577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23682776:1
position: 23682776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e4585c6-ea83-4953-9593-f8d303afd563
SIO_000300: 1
SIO_000628: feature:23682577-23682776:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24280777..24280976
location: region:24280777-24280976:1
BFO_0000051: feature:24280777-24280976:1:region
SIO_000974: 95fb665d-9dcc-49f9-a77b-6eb5c0c6136c

position:24280777:1
position: 24280777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24280976:1
position: 24280976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95fb665d-9dcc-49f9-a77b-6eb5c0c6136c
SIO_000300: 1
SIO_000628: feature:24280777-24280976:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27535433..27535632
location: region:27535433-27535632:1
BFO_0000051: feature:27535433-27535632:1:region
SIO_000974: 0dfaf128-f05c-463a-9a3b-fdf38e201ea2

position:27535433:1
position: 27535433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27535632:1
position: 27535632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0dfaf128-f05c-463a-9a3b-fdf38e201ea2
SIO_000300: 1
SIO_000628: feature:27535433-27535632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31925965..31926164
location: region:31925965-31926164:1
BFO_0000051: feature:31925965-31926164:1:region
SIO_000974: 4c4f5ae3-662c-47b6-be8b-c76d0618c327

position:31925965:1
position: 31925965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31926164:1
position: 31926164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c4f5ae3-662c-47b6-be8b-c76d0618c327
SIO_000300: 1
SIO_000628: feature:31925965-31926164:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39218716..39218915
location: region:39218716-39218915:1
BFO_0000051: feature:39218716-39218915:1:region
SIO_000974: e55f1fa1-2a72-4a85-9d45-a4e90bf900be

position:39218716:1
position: 39218716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39218915:1
position: 39218915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e55f1fa1-2a72-4a85-9d45-a4e90bf900be
SIO_000300: 1
SIO_000628: feature:39218716-39218915:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42396594..42396793
location: region:42396594-42396793:1
BFO_0000051: feature:42396594-42396793:1:region
SIO_000974: 247657e5-fd39-4d2a-8d4d-82deb7e6c89e

position:42396594:1
position: 42396594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42396793:1
position: 42396793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

247657e5-fd39-4d2a-8d4d-82deb7e6c89e
SIO_000300: 1
SIO_000628: feature:42396594-42396793:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42968480..42968679
location: region:42968480-42968679:1
BFO_0000051: feature:42968480-42968679:1:region
SIO_000974: 2e4ee68f-a70e-4187-899e-bc34f08f32d1

position:42968480:1
position: 42968480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42968679:1
position: 42968679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e4ee68f-a70e-4187-899e-bc34f08f32d1
SIO_000300: 1
SIO_000628: feature:42968480-42968679:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44795554..44795753
location: region:44795554-44795753:1
BFO_0000051: feature:44795554-44795753:1:region
SIO_000974: baffbd5e-ea20-4c03-9f9c-6f7b73b3a600

position:44795554:1
position: 44795554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44795753:1
position: 44795753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

baffbd5e-ea20-4c03-9f9c-6f7b73b3a600
SIO_000300: 1
SIO_000628: feature:44795554-44795753:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46358188..46358387
location: region:46358188-46358387:1
BFO_0000051: feature:46358188-46358387:1:region
SIO_000974: b291fa0f-399b-43c9-b3a5-7f28fea08c11

position:46358188:1
position: 46358188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46358387:1
position: 46358387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b291fa0f-399b-43c9-b3a5-7f28fea08c11
SIO_000300: 1
SIO_000628: feature:46358188-46358387:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1457097
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47991852..47992051
location: region:47991852-47992051:1
BFO_0000051: feature:47991852-47992051:1:region
SIO_000974: c5394d3f-0032-46c0-bb1d-5d81b1815be4

position:47991852:1
position: 47991852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47992051:1
position: 47992051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5394d3f-0032-46c0-bb1d-5d81b1815be4
SIO_000300: 1
SIO_000628: feature:47991852-47992051:1:region