Coleophora flavipennella genome assembly, chromosome: 26.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Coleophoridae; Coleophora.

Submitted (05-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

The assembly ilColFlav1.1 is based on 23x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size.

Coleophora flavipennella genome assembly, chromosome: 27.

Coleophora flavipennella genome assembly, chromosome: 28.

Coleophora flavipennella genome assembly, chromosome: 29.

Coleophora flavipennella genome assembly, chromosome: 30.

Coleophora flavipennella genome assembly, chromosome: 31.

Coleophora flavipennella genome assembly, chromosome: 32.

Coleophora flavipennella genome assembly, chromosome: 33.

Coleophora flavipennella genome assembly, chromosome: 34.

Coleophora flavipennella genome assembly, chromosome: 35.

Coleophora flavipennella genome assembly, chromosome: 36.

Coleophora flavipennella genome assembly, chromosome: 37.

Coleophora flavipennella genome assembly, chromosome: 38.

Coleophora flavipennella genome assembly, chromosome: 39.

Coleophora flavipennella genome assembly, chromosome: 40.

Coleophora flavipennella genome assembly, chromosome: 41.

Coleophora flavipennella genome assembly, chromosome: 42.

Coleophora flavipennella genome assembly, chromosome: 43.

Coleophora flavipennella genome assembly, chromosome: 44.

Coleophora flavipennella genome assembly, chromosome: 45.

Coleophora flavipennella genome assembly, chromosome: 46.

Coleophora flavipennella genome assembly, chromosome: 47.

Coleophora flavipennella genome assembly, chromosome: 48.

Coleophora flavipennella genome assembly, chromosome: 49.

Coleophora flavipennella genome assembly, chromosome: 50.

Coleophora flavipennella genome assembly, chromosome: 51.

Coleophora flavipennella genome assembly, chromosome: 52.

Coleophora flavipennella genome assembly, chromosome: 53.

Coleophora flavipennella genome assembly, chromosome: 54.

Coleophora flavipennella genome assembly, chromosome: 55.

Coleophora flavipennella genome assembly, chromosome: Z.

Coleophora flavipennella genome assembly, chromosome: W.

Coleophora flavipennella genome assembly, organelle: mitochondrion.

Yponomeuta rorrellus genome assembly, chromosome: 1.
Yponomeuta rorrellus (willow ermine moth)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Yponomeutidae; Yponomeutinae; Yponomeuta.

Submitted (08-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

The assembly ilYpoRore1.1 is based on 25x PacBio data generated by\nthe\nDarwin Tree of Life Project (https://www.darwintreeoflife.org/).\nThe\nassembly process included the following sequence of steps: initial\nPacBio\nassembly generation with Hifiasm, retained haplotig separation with\npurge_dups, and Hi-C based scaffolding with ${HIC_ASSEMBLER}. The\nmitochondrial genome was assembled using MitoHiFi. Finally, the\nprimary\nassembly was analysed and manually improved using rapid curation.\nChromosome-scale scaffolds are named by synteny based on Yponomeuta\nsedellus (moths) GCA_934045075.1. This heterogametic female sample\nappears\nto exhibit the sex chromosome trivalent system of n = 29A + A AW Z\nas\ndescribed in\nhttps://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1601-\n5223.1988.tb00311.x\n. The A component of the trivalent in ilYpoCagn1 has been assigned\nas\nchromosome 27Z, this is based on its alignment to chromosome 27 in\nthe\nclosely related species Y.sedellus (ilYpoSedl1) which is derived\nfrom a ZZ\nmale sample. Chromosome Z27 in ilYpoCagn1, and chromosome 27 in\nilYpoSedl1\nboth correspond to Merian element 25.

Yponomeuta rorrellus genome assembly, chromosome: Z.

Yponomeuta rorrellus genome assembly, chromosome: 2.

Yponomeuta rorrellus genome assembly, chromosome: 3.

Yponomeuta rorrellus genome assembly, chromosome: 4.

Yponomeuta rorrellus genome assembly, chromosome: 5.

Yponomeuta rorrellus genome assembly, chromosome: 6.

Yponomeuta rorrellus genome assembly, chromosome: 7.

Yponomeuta rorrellus genome assembly, chromosome: 8.

Yponomeuta rorrellus genome assembly, chromosome: 9.

Yponomeuta rorrellus genome assembly, chromosome: 10.

Yponomeuta rorrellus genome assembly, chromosome: 11.

Yponomeuta rorrellus genome assembly, chromosome: 12.

Yponomeuta rorrellus genome assembly, chromosome: 13.

Yponomeuta rorrellus genome assembly, chromosome: 14.

Yponomeuta rorrellus genome assembly, chromosome: 15.

Yponomeuta rorrellus genome assembly, chromosome: 16.

Yponomeuta rorrellus genome assembly, chromosome: 17.

Yponomeuta rorrellus genome assembly, chromosome: 18.

Yponomeuta rorrellus genome assembly, chromosome: 19.

Yponomeuta rorrellus genome assembly, chromosome: 20.

Yponomeuta rorrellus genome assembly, chromosome: 21.

Yponomeuta rorrellus genome assembly, chromosome: 22.

Yponomeuta rorrellus genome assembly, chromosome: 23.

Yponomeuta rorrellus genome assembly, chromosome: 24.

Yponomeuta rorrellus genome assembly, chromosome: 25.

Yponomeuta rorrellus genome assembly, chromosome: 26.

Yponomeuta rorrellus genome assembly, chromosome: 27Z.

Yponomeuta rorrellus genome assembly, chromosome: 28.

Yponomeuta rorrellus genome assembly, chromosome: 29.

Yponomeuta rorrellus genome assembly, chromosome: W.

Yponomeuta rorrellus genome assembly, chromosome: 30.

Yponomeuta rorrellus genome assembly, organelle: mitochondrion.
mitochondrion Yponomeuta rorrellus (willow ermine moth)

Leptodirus hochenwarti genome assembly, chromosome: 1.
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Leiodidae; Cholevinae; Leptodirus.

Submitted (09-NOV-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

The assembly icLepHoch12.1 is based on 47x PacBio data and Arima2\nHi-C data\ngenerated by the Wellcome Sanger Institute Tree of Life Programme\n(https://www.sanger.ac.uk/programme/tree-of-life/) as part of the\nEuropean\nReference Genome Atlas pilot project\n(https://www.erga-biodiversity.eu/pilot-project). The assembly\nprocess\nincluded the following sequence of steps: initial PacBio assembly\ngeneration with Hifiasm, retained haplotig separation with\npurge_dups, and\nHi-C based scaffolding with YaHS. The mitochondrial genome was\nassembled\nusing MitoHiFi. Finally, the primary assembly was analysed and\nmanually\nimproved using rapid curation. This alternate haplotype assembly\ncombines\nthe haplotigs separated by purge_dups with haplotigs separated from\nthe\nprimary assembly during curation. Due to the repetitive nature of\nthe\nsequence the order and orientation of scaffolds in the following\nregions\nare unsure: Chromosome 1 ~14.10-29.54Mb, Chromosome 2\n~19.21-24.26Mb,\nChromosome 3 ~18.39-26.05, Chromosome 4 ~16.28-26.44Mb, Chromosome\n5\n~17.23-24.40Mb, Chromosome 6 ~9.90-22.38Mb, Chromosome 7\n~16.55-33.23Mb,\nChromosome 8 ~17.79-35.15Mb, Chromosome 9 ~16.21-27.67Mb,\nChromosome 10\n~12.84-24.02Mb, Chromosome 11 ~8.29-18.51Mb, Chromosome 12\n~11.79-15.64Mb.

Leptodirus hochenwarti genome assembly, chromosome: 2.