Orthosia gracilis genome assembly, chromosome: 7.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 7.
sequence version: OX387271.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 50114025
topology: linear
RO_0000086: SO_0000987
location: 1..50114025
location: region:1-50114025:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50114025:1
position: 50114025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-50114025:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 7
mol type: genomic DNA

997542
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8566308..8566507
location: region:8566308-8566507:1
BFO_0000051: feature:8566308-8566507:1:region
SIO_000974: 69b4f038-c0ee-4fef-8e94-d4dd1b4411de

position:8566308:1
position: 8566308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8566507:1
position: 8566507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8566308-8566507:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15071248..15071447
location: region:15071248-15071447:1
BFO_0000051: feature:15071248-15071447:1:region
SIO_000974: ec69d89d-d669-4ca5-839c-cf613c5a6112

position:15071248:1
position: 15071248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15071447:1
position: 15071447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:15071248-15071447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29982492..29982691
location: region:29982492-29982691:1
BFO_0000051: feature:29982492-29982691:1:region
SIO_000974: 6a6bb30d-dbfe-4181-90b7-30e028f19304

position:29982492:1
position: 29982492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29982691:1
position: 29982691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:29982492-29982691:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34557263..34557462
location: region:34557263-34557462:1
BFO_0000051: feature:34557263-34557462:1:region
SIO_000974: 01fbffc9-7d90-4005-8529-371d729af191

position:34557263:1
position: 34557263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34557462:1
position: 34557462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:34557263-34557462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46387684..46387883
location: region:46387684-46387883:1
BFO_0000051: feature:46387684-46387883:1:region
SIO_000974: 1ce2c28f-496a-4ace-bf7e-6daae54cd697

position:46387684:1
position: 46387684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46387883:1
position: 46387883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:46387684-46387883:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46470726..46470925
location: region:46470726-46470925:1
BFO_0000051: feature:46470726-46470925:1:region
SIO_000974: 4c2b0a8b-fa92-40ec-af8a-3d43cd4ff9fb

position:46470726:1
position: 46470726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46470925:1
position: 46470925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:46470726-46470925:1:region

Orthosia gracilis genome assembly, chromosome: 8.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 8.
sequence version: OX387272.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 49777903
topology: linear
RO_0000086: SO_0000987
location: 1..49777903
location: region:1-49777903:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49777903:1
position: 49777903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-49777903:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3813850..3814049
location: region:3813850-3814049:1
BFO_0000051: feature:3813850-3814049:1:region
SIO_000974: 0fc6dc26-1dfe-4219-b773-ba1336bc7f2b

position:3813850:1
position: 3813850
reference: sequence
type: ForwardStrandPosition
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position: 3814049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3813850-3814049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17923685..17923884
location: region:17923685-17923884:1
BFO_0000051: feature:17923685-17923884:1:region
SIO_000974: fcab89d6-75ac-416a-91db-b3a28121a9f6

position:17923685:1
position: 17923685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17923884:1
position: 17923884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17923685-17923884:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31683647..31683846
location: region:31683647-31683846:1
BFO_0000051: feature:31683647-31683846:1:region
SIO_000974: 141731e2-9764-43b1-a4f3-53953402c03a

position:31683647:1
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reference: sequence
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position: 31683846
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:31683647-31683846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33278509..33278708
location: region:33278509-33278708:1
BFO_0000051: feature:33278509-33278708:1:region
SIO_000974: 78be98e7-8893-47e7-a447-d242bf9af310

position:33278509:1
position: 33278509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33278708:1
position: 33278708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33278509-33278708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38872368..38872567
location: region:38872368-38872567:1
BFO_0000051: feature:38872368-38872567:1:region
SIO_000974: 643f1257-bd36-41ce-ae6d-6ac4573beece

position:38872368:1
position: 38872368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38872567:1
position: 38872567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:38872368-38872567:1:region

Orthosia gracilis genome assembly, chromosome: 9.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 9.
sequence version: OX387273.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 46434334
topology: linear
RO_0000086: SO_0000987
location: 1..46434334
location: region:1-46434334:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46434334:1
position: 46434334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-46434334:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12149001..12149200
location: region:12149001-12149200:1
BFO_0000051: feature:12149001-12149200:1:region
SIO_000974: 1a45bf14-680f-4fc5-9220-9e8775e388d5

position:12149001:1
position: 12149001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12149200:1
position: 12149200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:12149001-12149200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28085127..28085326
location: region:28085127-28085326:1
BFO_0000051: feature:28085127-28085326:1:region
SIO_000974: 504425de-af84-4086-b8ad-751be4848373

position:28085127:1
position: 28085127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28085326:1
position: 28085326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:28085127-28085326:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31416126..31416325
location: region:31416126-31416325:1
BFO_0000051: feature:31416126-31416325:1:region
SIO_000974: 72b3c371-30d9-4f81-ae62-4873d0528936

position:31416126:1
position: 31416126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31416325:1
position: 31416325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:31416126-31416325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34167822..34168021
location: region:34167822-34168021:1
BFO_0000051: feature:34167822-34168021:1:region
SIO_000974: 4f80398d-8ac8-4e06-b873-e570cc8b9dc0

position:34167822:1
position: 34167822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34168021:1
position: 34168021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:34167822-34168021:1:region

Orthosia gracilis genome assembly, chromosome: 10.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 10.
sequence version: OX387274.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 46339759
topology: linear
RO_0000086: SO_0000987
location: 1..46339759
location: region:1-46339759:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46339759:1
position: 46339759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-46339759:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1662646..1662845
location: region:1662646-1662845:1
BFO_0000051: feature:1662646-1662845:1:region
SIO_000974: 11742ca7-687a-406f-bb2a-78293952e045

position:1662646:1
position: 1662646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1662845:1
position: 1662845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1662646-1662845:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1920819..1921018
location: region:1920819-1921018:1
BFO_0000051: feature:1920819-1921018:1:region
SIO_000974: 0dfa78e7-c68b-4305-92e4-db44f7c64f72

position:1920819:1
position: 1920819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1921018:1
position: 1921018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1920819-1921018:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25890968..25891167
location: region:25890968-25891167:1
BFO_0000051: feature:25890968-25891167:1:region
SIO_000974: 8a473e46-8508-49b7-9fc0-80ef3a0af882

position:25890968:1
position: 25890968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25891167:1
position: 25891167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25890968-25891167:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45878499..45878698
location: region:45878499-45878698:1
BFO_0000051: feature:45878499-45878698:1:region
SIO_000974: dc394b63-b59d-46ca-885f-5cf283fe9bd4

position:45878499:1
position: 45878499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45878698:1
position: 45878698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:45878499-45878698:1:region

Orthosia gracilis genome assembly, chromosome: 11.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 11.
sequence version: OX387275.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 44255424
topology: linear
RO_0000086: SO_0000987
location: 1..44255424
location: region:1-44255424:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44255424:1
position: 44255424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-44255424:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2133809..2134008
location: region:2133809-2134008:1
BFO_0000051: feature:2133809-2134008:1:region
SIO_000974: 8571a06a-5c66-44b7-87bf-37385ce80a66

position:2133809:1
position: 2133809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2134008:1
position: 2134008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2133809-2134008:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5636515..5636714
location: region:5636515-5636714:1
BFO_0000051: feature:5636515-5636714:1:region
SIO_000974: fd779b50-942c-4f5f-a351-e6e329b0f1e4

position:5636515:1
position: 5636515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5636714:1
position: 5636714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd779b50-942c-4f5f-a351-e6e329b0f1e4
SIO_000300: 1
SIO_000628: feature:5636515-5636714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10648986..10649185
location: region:10648986-10649185:1
BFO_0000051: feature:10648986-10649185:1:region
SIO_000974: 531c7db2-13e7-447c-91ad-097f74623fb6

position:10648986:1
position: 10648986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10649185:1
position: 10649185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

531c7db2-13e7-447c-91ad-097f74623fb6
SIO_000300: 1
SIO_000628: feature:10648986-10649185:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10987316..10987515
location: region:10987316-10987515:1
BFO_0000051: feature:10987316-10987515:1:region
SIO_000974: b0977184-e8eb-4b84-b47c-b89d7b8a156f

position:10987316:1
position: 10987316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10987515:1
position: 10987515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0977184-e8eb-4b84-b47c-b89d7b8a156f
SIO_000300: 1
SIO_000628: feature:10987316-10987515:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20000491..20000690
location: region:20000491-20000690:1
BFO_0000051: feature:20000491-20000690:1:region
SIO_000974: d04546a2-f98a-4a96-bd34-30676cf771a4

position:20000491:1
position: 20000491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20000690:1
position: 20000690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d04546a2-f98a-4a96-bd34-30676cf771a4
SIO_000300: 1
SIO_000628: feature:20000491-20000690:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26183026..26183225
location: region:26183026-26183225:1
BFO_0000051: feature:26183026-26183225:1:region
SIO_000974: 1a97d926-02e4-46ee-870e-824e15d82cbe

position:26183026:1
position: 26183026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26183225:1
position: 26183225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a97d926-02e4-46ee-870e-824e15d82cbe
SIO_000300: 1
SIO_000628: feature:26183026-26183225:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30129926..30130125
location: region:30129926-30130125:1
BFO_0000051: feature:30129926-30130125:1:region
SIO_000974: 63731155-ff4d-431d-a797-2ea67b3a0074

position:30129926:1
position: 30129926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30130125:1
position: 30130125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

63731155-ff4d-431d-a797-2ea67b3a0074
SIO_000300: 1
SIO_000628: feature:30129926-30130125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31045858..31046057
location: region:31045858-31046057:1
BFO_0000051: feature:31045858-31046057:1:region
SIO_000974: 5e370cf5-c9a5-4bd9-ac7e-865ca1d16b02

position:31045858:1
position: 31045858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31046057:1
position: 31046057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e370cf5-c9a5-4bd9-ac7e-865ca1d16b02
SIO_000300: 1
SIO_000628: feature:31045858-31046057:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33453906..33454105
location: region:33453906-33454105:1
BFO_0000051: feature:33453906-33454105:1:region
SIO_000974: d71ed72c-26e0-44ce-9375-c44a0f558705

position:33453906:1
position: 33453906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33454105:1
position: 33454105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d71ed72c-26e0-44ce-9375-c44a0f558705
SIO_000300: 1
SIO_000628: feature:33453906-33454105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34395665..34395864
location: region:34395665-34395864:1
BFO_0000051: feature:34395665-34395864:1:region
SIO_000974: 821bdd58-7daf-4d91-9e90-6b4e52190cb5

position:34395665:1
position: 34395665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34395864:1
position: 34395864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

821bdd58-7daf-4d91-9e90-6b4e52190cb5
SIO_000300: 1
SIO_000628: feature:34395665-34395864:1:region

Orthosia gracilis genome assembly, chromosome: 12.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 12.
sequence version: OX387276.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 38024603
topology: linear
RO_0000086: SO_0000987
location: 1..38024603
location: region:1-38024603:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38024603:1
position: 38024603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38024603:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4097342..4097541
location: region:4097342-4097541:1
BFO_0000051: feature:4097342-4097541:1:region
SIO_000974: 7c32753a-135e-4b53-a577-80dff61954e7

position:4097342:1
position: 4097342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4097541:1
position: 4097541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7c32753a-135e-4b53-a577-80dff61954e7
SIO_000300: 1
SIO_000628: feature:4097342-4097541:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12649913..12650112
location: region:12649913-12650112:1
BFO_0000051: feature:12649913-12650112:1:region
SIO_000974: 7c044b5b-7145-42ca-b577-6240c9f76113

position:12649913:1
position: 12649913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12650112:1
position: 12650112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7c044b5b-7145-42ca-b577-6240c9f76113
SIO_000300: 1
SIO_000628: feature:12649913-12650112:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16617062..16617261
location: region:16617062-16617261:1
BFO_0000051: feature:16617062-16617261:1:region
SIO_000974: 32e33ba3-047d-4f87-8892-3e314fe83f82

position:16617062:1
position: 16617062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16617261:1
position: 16617261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

32e33ba3-047d-4f87-8892-3e314fe83f82
SIO_000300: 1
SIO_000628: feature:16617062-16617261:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 997542
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23973506..23973705
location: region:23973506-23973705:1
BFO_0000051: feature:23973506-23973705:1:region
SIO_000974: 5bb2fb0e-7dc5-4e15-87c0-128fa3afd007

position:23973506:1
position: 23973506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23973705:1
position: 23973705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5bb2fb0e-7dc5-4e15-87c0-128fa3afd007
SIO_000300: 1
SIO_000628: feature:23973506-23973705:1:region

Orthosia gracilis genome assembly, chromosome: 13.
type: Entry
definition: Orthosia gracilis genome assembly, chromosome: 13.
sequence version: OX387277.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14303775
topology: linear
RO_0000086: SO_0000987
location: 1..14303775
location: region:1-14303775:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14303775:1
position: 14303775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14303775:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
chromosome: 13
mol type: genomic DNA

Orthosia gracilis genome assembly, organelle: mitochondrion.
type: Entry
definition: Orthosia gracilis genome assembly, organelle: mitochondrion.
sequence version: OX387278.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: mitochondrion Orthosia gracilis
organism: Orthosia gracilis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtGrac1.1 is based on 36x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15426
topology: linear
RO_0000086: SO_0000987
location: 1..15426
location: region:1-15426:1
RO_0002162: 997542

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15426:1
position: 15426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15426:1:source
BFO_0000050: sequence
organism: Orthosia gracilis
organelle: mitochondrion
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: Z.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: Z.
sequence version: OX387279.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20510064
topology: linear
RO_0000086: SO_0000987
location: 1..20510064
location: region:1-20510064:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20510064:1
position: 20510064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20510064:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: Z
mol type: genomic DNA

987469
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1905433..1905632
location: region:1905433-1905632:1
BFO_0000051: feature:1905433-1905632:1:region
SIO_000974: d6d47fca-68a7-4691-8664-46dcf98a0278

position:1905433:1
position: 1905433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1905632:1
position: 1905632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d6d47fca-68a7-4691-8664-46dcf98a0278
SIO_000300: 1
SIO_000628: feature:1905433-1905632:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4217536..4217735
location: region:4217536-4217735:1
BFO_0000051: feature:4217536-4217735:1:region
SIO_000974: 385b0716-b2a1-43e2-ba84-dc3e4bdb49e3

position:4217536:1
position: 4217536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4217735:1
position: 4217735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

385b0716-b2a1-43e2-ba84-dc3e4bdb49e3
SIO_000300: 1
SIO_000628: feature:4217536-4217735:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19918267..19918466
location: region:19918267-19918466:1
BFO_0000051: feature:19918267-19918466:1:region
SIO_000974: a0256b1f-42ef-406b-a7fd-77075ee4b3a7

position:19918267:1
position: 19918267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19918466:1
position: 19918466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0256b1f-42ef-406b-a7fd-77075ee4b3a7
SIO_000300: 1
SIO_000628: feature:19918267-19918466:1:region

Shargacucullia verbasci genome assembly, chromosome: 1.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 1.
sequence version: OX387280.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17221357
topology: linear
RO_0000086: SO_0000987
location: 1..17221357
location: region:1-17221357:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17221357:1
position: 17221357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17221357:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11821014..11821213
location: region:11821014-11821213:1
BFO_0000051: feature:11821014-11821213:1:region
SIO_000974: 01cd9efb-7ad1-49be-bb2b-810cc49b7217

position:11821014:1
position: 11821014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11821213:1
position: 11821213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01cd9efb-7ad1-49be-bb2b-810cc49b7217
SIO_000300: 1
SIO_000628: feature:11821014-11821213:1:region

Shargacucullia verbasci genome assembly, chromosome: W.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: W.
sequence version: OX387281.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17213636
topology: linear
RO_0000086: SO_0000987
location: 1..17213636
location: region:1-17213636:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17213636:1
position: 17213636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17213636:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4322906..4323105
location: region:4322906-4323105:1
BFO_0000051: feature:4322906-4323105:1:region
SIO_000974: 0b7ce41b-9fcd-4a55-9afe-ba6d92f697c8

position:4322906:1
position: 4322906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4323105:1
position: 4323105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0b7ce41b-9fcd-4a55-9afe-ba6d92f697c8
SIO_000300: 1
SIO_000628: feature:4322906-4323105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4684965..4685164
location: region:4684965-4685164:1
BFO_0000051: feature:4684965-4685164:1:region
SIO_000974: 14428c8e-c563-44e4-929e-8126c0ff825b

position:4684965:1
position: 4684965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4685164:1
position: 4685164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

14428c8e-c563-44e4-929e-8126c0ff825b
SIO_000300: 1
SIO_000628: feature:4684965-4685164:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6384165..6384364
location: region:6384165-6384364:1
BFO_0000051: feature:6384165-6384364:1:region
SIO_000974: 5ecaad6a-cc12-47d0-8cf9-bcede3d73265

position:6384165:1
position: 6384165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6384364:1
position: 6384364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ecaad6a-cc12-47d0-8cf9-bcede3d73265
SIO_000300: 1
SIO_000628: feature:6384165-6384364:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10134879..10135078
location: region:10134879-10135078:1
BFO_0000051: feature:10134879-10135078:1:region
SIO_000974: 8805a4b9-3f23-49cb-b3d9-ea00e5f97663

position:10134879:1
position: 10134879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10135078:1
position: 10135078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8805a4b9-3f23-49cb-b3d9-ea00e5f97663
SIO_000300: 1
SIO_000628: feature:10134879-10135078:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13527691..13527890
location: region:13527691-13527890:1
BFO_0000051: feature:13527691-13527890:1:region
SIO_000974: 0a3bee43-7719-4695-be02-b602b08b9b0e

position:13527691:1
position: 13527691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13527890:1
position: 13527890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a3bee43-7719-4695-be02-b602b08b9b0e
SIO_000300: 1
SIO_000628: feature:13527691-13527890:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16297438..16297637
location: region:16297438-16297637:1
BFO_0000051: feature:16297438-16297637:1:region
SIO_000974: c6785f2c-10ea-42f0-81a4-e54d4c18bc04

position:16297438:1
position: 16297438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16297637:1
position: 16297637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c6785f2c-10ea-42f0-81a4-e54d4c18bc04
SIO_000300: 1
SIO_000628: feature:16297438-16297637:1:region

Shargacucullia verbasci genome assembly, chromosome: 2.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 2.
sequence version: OX387282.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16100926
topology: linear
RO_0000086: SO_0000987
location: 1..16100926
location: region:1-16100926:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16100926:1
position: 16100926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16100926:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14720580..14720779
location: region:14720580-14720779:1
BFO_0000051: feature:14720580-14720779:1:region
SIO_000974: 3bd7acd5-a3da-4e0f-988f-b9be9cb06953

position:14720580:1
position: 14720580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14720779:1
position: 14720779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3bd7acd5-a3da-4e0f-988f-b9be9cb06953
SIO_000300: 1
SIO_000628: feature:14720580-14720779:1:region

Shargacucullia verbasci genome assembly, chromosome: 3.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 3.
sequence version: OX387283.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15949347
topology: linear
RO_0000086: SO_0000987
location: 1..15949347
location: region:1-15949347:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15949347:1
position: 15949347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15949347:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15731001..15731200
location: region:15731001-15731200:1
BFO_0000051: feature:15731001-15731200:1:region
SIO_000974: 0276917a-a23f-48fd-85ff-aa00b422697d

position:15731001:1
position: 15731001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15731200:1
position: 15731200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0276917a-a23f-48fd-85ff-aa00b422697d
SIO_000300: 1
SIO_000628: feature:15731001-15731200:1:region

Shargacucullia verbasci genome assembly, chromosome: 4.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 4.
sequence version: OX387284.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15837994
topology: linear
RO_0000086: SO_0000987
location: 1..15837994
location: region:1-15837994:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15837994:1
position: 15837994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15837994:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7160001..7160200
location: region:7160001-7160200:1
BFO_0000051: feature:7160001-7160200:1:region
SIO_000974: aadf391e-880b-4acb-a692-028e11b2d686

position:7160001:1
position: 7160001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7160200:1
position: 7160200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aadf391e-880b-4acb-a692-028e11b2d686
SIO_000300: 1
SIO_000628: feature:7160001-7160200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13377251..13377450
location: region:13377251-13377450:1
BFO_0000051: feature:13377251-13377450:1:region
SIO_000974: 2867f25e-8db9-4535-8c83-9bb3c028dadc

position:13377251:1
position: 13377251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13377450:1
position: 13377450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2867f25e-8db9-4535-8c83-9bb3c028dadc
SIO_000300: 1
SIO_000628: feature:13377251-13377450:1:region

Shargacucullia verbasci genome assembly, chromosome: 5.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 5.
sequence version: OX387285.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15808491
topology: linear
RO_0000086: SO_0000987
location: 1..15808491
location: region:1-15808491:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15808491:1
position: 15808491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15808491:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13141960..13142159
location: region:13141960-13142159:1
BFO_0000051: feature:13141960-13142159:1:region
SIO_000974: 57ee912c-4dd2-4089-814c-b777e96b0bfd

position:13141960:1
position: 13141960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13142159:1
position: 13142159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57ee912c-4dd2-4089-814c-b777e96b0bfd
SIO_000300: 1
SIO_000628: feature:13141960-13142159:1:region

Shargacucullia verbasci genome assembly, chromosome: 6.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 6.
sequence version: OX387286.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15672556
topology: linear
RO_0000086: SO_0000987
location: 1..15672556
location: region:1-15672556:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15672556:1
position: 15672556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15672556:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10862949..10863148
location: region:10862949-10863148:1
BFO_0000051: feature:10862949-10863148:1:region
SIO_000974: 88050564-c59d-49ab-a177-93e6527101e7

position:10862949:1
position: 10862949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10863148:1
position: 10863148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88050564-c59d-49ab-a177-93e6527101e7
SIO_000300: 1
SIO_000628: feature:10862949-10863148:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11292678..11292877
location: region:11292678-11292877:1
BFO_0000051: feature:11292678-11292877:1:region
SIO_000974: ab0cac6d-124e-4e62-a261-21cf2c388f22

position:11292678:1
position: 11292678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11292877:1
position: 11292877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab0cac6d-124e-4e62-a261-21cf2c388f22
SIO_000300: 1
SIO_000628: feature:11292678-11292877:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12191224..12191423
location: region:12191224-12191423:1
BFO_0000051: feature:12191224-12191423:1:region
SIO_000974: d234b2c3-e7af-4d31-8dcd-b7048e6b976e

position:12191224:1
position: 12191224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12191423:1
position: 12191423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d234b2c3-e7af-4d31-8dcd-b7048e6b976e
SIO_000300: 1
SIO_000628: feature:12191224-12191423:1:region

Shargacucullia verbasci genome assembly, chromosome: 7.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 7.
sequence version: OX387287.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15539790
topology: linear
RO_0000086: SO_0000987
location: 1..15539790
location: region:1-15539790:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15539790:1
position: 15539790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15539790:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3555036..3555235
location: region:3555036-3555235:1
BFO_0000051: feature:3555036-3555235:1:region
SIO_000974: 8b3f4ea2-0532-4037-9872-8bdbf4bd3eef

position:3555036:1
position: 3555036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3555235:1
position: 3555235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8b3f4ea2-0532-4037-9872-8bdbf4bd3eef
SIO_000300: 1
SIO_000628: feature:3555036-3555235:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6579769..6579968
location: region:6579769-6579968:1
BFO_0000051: feature:6579769-6579968:1:region
SIO_000974: c69b1094-ff0b-4549-a498-a0477051f77f

position:6579769:1
position: 6579769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6579968:1
position: 6579968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c69b1094-ff0b-4549-a498-a0477051f77f
SIO_000300: 1
SIO_000628: feature:6579769-6579968:1:region

Shargacucullia verbasci genome assembly, chromosome: 8.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 8.
sequence version: OX387288.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14970932
topology: linear
RO_0000086: SO_0000987
location: 1..14970932
location: region:1-14970932:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14970932:1
position: 14970932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14970932:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8457300..8457499
location: region:8457300-8457499:1
BFO_0000051: feature:8457300-8457499:1:region
SIO_000974: d51156c4-08c7-4111-ac79-651d9cea5c93

position:8457300:1
position: 8457300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8457499:1
position: 8457499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d51156c4-08c7-4111-ac79-651d9cea5c93
SIO_000300: 1
SIO_000628: feature:8457300-8457499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10857603..10857802
location: region:10857603-10857802:1
BFO_0000051: feature:10857603-10857802:1:region
SIO_000974: ba5c6a93-ef56-4472-a2c4-d6c68ef883e3

position:10857603:1
position: 10857603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10857802:1
position: 10857802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba5c6a93-ef56-4472-a2c4-d6c68ef883e3
SIO_000300: 1
SIO_000628: feature:10857603-10857802:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12315783..12315982
location: region:12315783-12315982:1
BFO_0000051: feature:12315783-12315982:1:region
SIO_000974: f1981e34-77dd-4bb8-8129-7f885938f362

position:12315783:1
position: 12315783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12315982:1
position: 12315982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1981e34-77dd-4bb8-8129-7f885938f362
SIO_000300: 1
SIO_000628: feature:12315783-12315982:1:region

Shargacucullia verbasci genome assembly, chromosome: 9.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 9.
sequence version: OX387289.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14878614
topology: linear
RO_0000086: SO_0000987
location: 1..14878614
location: region:1-14878614:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14878614:1
position: 14878614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14878614:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9001244..9001443
location: region:9001244-9001443:1
BFO_0000051: feature:9001244-9001443:1:region
SIO_000974: 22c766f4-1409-4e6f-9188-62cb487cc66f

position:9001244:1
position: 9001244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9001443:1
position: 9001443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22c766f4-1409-4e6f-9188-62cb487cc66f
SIO_000300: 1
SIO_000628: feature:9001244-9001443:1:region

Shargacucullia verbasci genome assembly, chromosome: 10.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 10.
sequence version: OX387290.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14753221
topology: linear
RO_0000086: SO_0000987
location: 1..14753221
location: region:1-14753221:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14753221:1
position: 14753221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14753221:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4253791..4253990
location: region:4253791-4253990:1
BFO_0000051: feature:4253791-4253990:1:region
SIO_000974: 5a449ec8-4682-480f-9be9-58b018936aa3

position:4253791:1
position: 4253791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4253990:1
position: 4253990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5a449ec8-4682-480f-9be9-58b018936aa3
SIO_000300: 1
SIO_000628: feature:4253791-4253990:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4294034..4294233
location: region:4294034-4294233:1
BFO_0000051: feature:4294034-4294233:1:region
SIO_000974: e8aa5e9d-8887-46da-a517-4380b903ad7c

position:4294034:1
position: 4294034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4294233:1
position: 4294233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8aa5e9d-8887-46da-a517-4380b903ad7c
SIO_000300: 1
SIO_000628: feature:4294034-4294233:1:region

Shargacucullia verbasci genome assembly, chromosome: 11.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 11.
sequence version: OX387291.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14653480
topology: linear
RO_0000086: SO_0000987
location: 1..14653480
location: region:1-14653480:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14653480:1
position: 14653480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14653480:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 11
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 12.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 12.
sequence version: OX387292.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14523181
topology: linear
RO_0000086: SO_0000987
location: 1..14523181
location: region:1-14523181:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14523181:1
position: 14523181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14523181:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10483128..10483327
location: region:10483128-10483327:1
BFO_0000051: feature:10483128-10483327:1:region
SIO_000974: 46a04d97-fb8e-4d23-ba9a-54849062e35a

position:10483128:1
position: 10483128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10483327:1
position: 10483327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

46a04d97-fb8e-4d23-ba9a-54849062e35a
SIO_000300: 1
SIO_000628: feature:10483128-10483327:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12453101..12453300
location: region:12453101-12453300:1
BFO_0000051: feature:12453101-12453300:1:region
SIO_000974: b16a7f21-e961-409c-9938-24c44d21c604

position:12453101:1
position: 12453101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12453300:1
position: 12453300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b16a7f21-e961-409c-9938-24c44d21c604
SIO_000300: 1
SIO_000628: feature:12453101-12453300:1:region

Shargacucullia verbasci genome assembly, chromosome: 13.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 13.
sequence version: OX387293.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14516085
topology: linear
RO_0000086: SO_0000987
location: 1..14516085
location: region:1-14516085:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14516085:1
position: 14516085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14516085:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 13
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 14.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 14.
sequence version: OX387294.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14027500
topology: linear
RO_0000086: SO_0000987
location: 1..14027500
location: region:1-14027500:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14027500:1
position: 14027500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14027500:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10592865..10593064
location: region:10592865-10593064:1
BFO_0000051: feature:10592865-10593064:1:region
SIO_000974: e4aa4e72-fbe8-4347-bdd9-1820f28271ac

position:10592865:1
position: 10592865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10593064:1
position: 10593064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4aa4e72-fbe8-4347-bdd9-1820f28271ac
SIO_000300: 1
SIO_000628: feature:10592865-10593064:1:region

Shargacucullia verbasci genome assembly, chromosome: 15.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 15.
sequence version: OX387295.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13865459
topology: linear
RO_0000086: SO_0000987
location: 1..13865459
location: region:1-13865459:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13865459:1
position: 13865459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13865459:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2923382..2923581
location: region:2923382-2923581:1
BFO_0000051: feature:2923382-2923581:1:region
SIO_000974: 4fdd9657-cddf-4050-83f2-9fecf5dbc8f4

position:2923382:1
position: 2923382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2923581:1
position: 2923581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4fdd9657-cddf-4050-83f2-9fecf5dbc8f4
SIO_000300: 1
SIO_000628: feature:2923382-2923581:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3874141..3874340
location: region:3874141-3874340:1
BFO_0000051: feature:3874141-3874340:1:region
SIO_000974: bf13a85e-2da9-48e8-afd4-f37c4046749c

position:3874141:1
position: 3874141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3874340:1
position: 3874340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bf13a85e-2da9-48e8-afd4-f37c4046749c
SIO_000300: 1
SIO_000628: feature:3874141-3874340:1:region

Shargacucullia verbasci genome assembly, chromosome: 16.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 16.
sequence version: OX387296.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13614406
topology: linear
RO_0000086: SO_0000987
location: 1..13614406
location: region:1-13614406:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13614406:1
position: 13614406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13614406:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5722177..5722376
location: region:5722177-5722376:1
BFO_0000051: feature:5722177-5722376:1:region
SIO_000974: dfba9ebe-9e64-4820-82d1-e3f5154d01d1

position:5722177:1
position: 5722177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5722376:1
position: 5722376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dfba9ebe-9e64-4820-82d1-e3f5154d01d1
SIO_000300: 1
SIO_000628: feature:5722177-5722376:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5796377..5796576
location: region:5796377-5796576:1
BFO_0000051: feature:5796377-5796576:1:region
SIO_000974: 0ead1db1-9d48-49d6-bed9-f2fcf9b75b3e

position:5796377:1
position: 5796377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5796576:1
position: 5796576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0ead1db1-9d48-49d6-bed9-f2fcf9b75b3e
SIO_000300: 1
SIO_000628: feature:5796377-5796576:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7788194..7788393
location: region:7788194-7788393:1
BFO_0000051: feature:7788194-7788393:1:region
SIO_000974: 1c3202a3-a516-4943-aa69-34b77d6553ef

position:7788194:1
position: 7788194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7788393:1
position: 7788393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c3202a3-a516-4943-aa69-34b77d6553ef
SIO_000300: 1
SIO_000628: feature:7788194-7788393:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8179558..8179757
location: region:8179558-8179757:1
BFO_0000051: feature:8179558-8179757:1:region
SIO_000974: 3847a551-0894-46b1-b08e-ebc7f1c5e56e

position:8179558:1
position: 8179558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8179757:1
position: 8179757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3847a551-0894-46b1-b08e-ebc7f1c5e56e
SIO_000300: 1
SIO_000628: feature:8179558-8179757:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10178896..10179095
location: region:10178896-10179095:1
BFO_0000051: feature:10178896-10179095:1:region
SIO_000974: 5767df4d-1b64-445a-8138-27169076b9a2

position:10178896:1
position: 10178896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10179095:1
position: 10179095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5767df4d-1b64-445a-8138-27169076b9a2
SIO_000300: 1
SIO_000628: feature:10178896-10179095:1:region

Shargacucullia verbasci genome assembly, chromosome: 17.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 17.
sequence version: OX387297.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13320693
topology: linear
RO_0000086: SO_0000987
location: 1..13320693
location: region:1-13320693:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13320693:1
position: 13320693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13320693:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8979252..8979451
location: region:8979252-8979451:1
BFO_0000051: feature:8979252-8979451:1:region
SIO_000974: e78f7dea-57a3-4e67-9814-804a66bfc371

position:8979252:1
position: 8979252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8979451:1
position: 8979451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e78f7dea-57a3-4e67-9814-804a66bfc371
SIO_000300: 1
SIO_000628: feature:8979252-8979451:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9425545..9425744
location: region:9425545-9425744:1
BFO_0000051: feature:9425545-9425744:1:region
SIO_000974: 74c8c00d-1866-401c-ab6c-11f546d39e1b

position:9425545:1
position: 9425545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9425744:1
position: 9425744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74c8c00d-1866-401c-ab6c-11f546d39e1b
SIO_000300: 1
SIO_000628: feature:9425545-9425744:1:region

Shargacucullia verbasci genome assembly, chromosome: 18.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 18.
sequence version: OX387298.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13275070
topology: linear
RO_0000086: SO_0000987
location: 1..13275070
location: region:1-13275070:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13275070:1
position: 13275070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13275070:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9474501..9474700
location: region:9474501-9474700:1
BFO_0000051: feature:9474501-9474700:1:region
SIO_000974: 21f774f5-57f0-4ada-9947-a7eb54552805

position:9474501:1
position: 9474501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9474700:1
position: 9474700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21f774f5-57f0-4ada-9947-a7eb54552805
SIO_000300: 1
SIO_000628: feature:9474501-9474700:1:region

Shargacucullia verbasci genome assembly, chromosome: 19.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 19.
sequence version: OX387299.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13081469
topology: linear
RO_0000086: SO_0000987
location: 1..13081469
location: region:1-13081469:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13081469:1
position: 13081469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13081469:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 19
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 20.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 20.
sequence version: OX387300.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12672851
topology: linear
RO_0000086: SO_0000987
location: 1..12672851
location: region:1-12672851:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12672851:1
position: 12672851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12672851:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 20
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 21.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 21.
sequence version: OX387301.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12518493
topology: linear
RO_0000086: SO_0000987
location: 1..12518493
location: region:1-12518493:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12518493:1
position: 12518493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12518493:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 21
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 22.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 22.
sequence version: OX387302.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11177936
topology: linear
RO_0000086: SO_0000987
location: 1..11177936
location: region:1-11177936:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11177936:1
position: 11177936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11177936:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8638351..8638550
location: region:8638351-8638550:1
BFO_0000051: feature:8638351-8638550:1:region
SIO_000974: cf7f2443-f449-4a5a-9891-e9df49839ded

position:8638351:1
position: 8638351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8638550:1
position: 8638550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf7f2443-f449-4a5a-9891-e9df49839ded
SIO_000300: 1
SIO_000628: feature:8638351-8638550:1:region

Shargacucullia verbasci genome assembly, chromosome: 23.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 23.
sequence version: OX387303.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10682101
topology: linear
RO_0000086: SO_0000987
location: 1..10682101
location: region:1-10682101:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10682101:1
position: 10682101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10682101:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3017823..3018022
location: region:3017823-3018022:1
BFO_0000051: feature:3017823-3018022:1:region
SIO_000974: ac9741d6-3152-4086-8f8f-c20ad3c3b7c7

position:3017823:1
position: 3017823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3018022:1
position: 3018022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac9741d6-3152-4086-8f8f-c20ad3c3b7c7
SIO_000300: 1
SIO_000628: feature:3017823-3018022:1:region

Shargacucullia verbasci genome assembly, chromosome: 24.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 24.
sequence version: OX387304.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10681135
topology: linear
RO_0000086: SO_0000987
location: 1..10681135
location: region:1-10681135:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10681135:1
position: 10681135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10681135:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 24
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 25.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 25.
sequence version: OX387305.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9713589
topology: linear
RO_0000086: SO_0000987
location: 1..9713589
location: region:1-9713589:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9713589:1
position: 9713589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9713589:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 25
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 26.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 26.
sequence version: OX387306.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9415983
topology: linear
RO_0000086: SO_0000987
location: 1..9415983
location: region:1-9415983:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9415983:1
position: 9415983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9415983:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2097902..2098101
location: region:2097902-2098101:1
BFO_0000051: feature:2097902-2098101:1:region
SIO_000974: e4b9275a-52f7-49cc-bb88-5bf79f45bb03

position:2097902:1
position: 2097902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2098101:1
position: 2098101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4b9275a-52f7-49cc-bb88-5bf79f45bb03
SIO_000300: 1
SIO_000628: feature:2097902-2098101:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4437253..4437452
location: region:4437253-4437452:1
BFO_0000051: feature:4437253-4437452:1:region
SIO_000974: cdfa03de-3cd8-4442-a296-488c6098f0a0

position:4437253:1
position: 4437253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4437452:1
position: 4437452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cdfa03de-3cd8-4442-a296-488c6098f0a0
SIO_000300: 1
SIO_000628: feature:4437253-4437452:1:region

Shargacucullia verbasci genome assembly, chromosome: 27.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 27.
sequence version: OX387307.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 7435077
topology: linear
RO_0000086: SO_0000987
location: 1..7435077
location: region:1-7435077:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7435077:1
position: 7435077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7435077:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 27
mol type: genomic DNA

Shargacucullia verbasci genome assembly, chromosome: 28.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 28.
sequence version: OX387308.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6913289
topology: linear
RO_0000086: SO_0000987
location: 1..6913289
location: region:1-6913289:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6913289:1
position: 6913289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6913289:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1773452..1773651
location: region:1773452-1773651:1
BFO_0000051: feature:1773452-1773651:1:region
SIO_000974: 1fd51194-4747-4640-808e-31f086626045

position:1773452:1
position: 1773452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1773651:1
position: 1773651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fd51194-4747-4640-808e-31f086626045
SIO_000300: 1
SIO_000628: feature:1773452-1773651:1:region

Shargacucullia verbasci genome assembly, chromosome: 29.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 29.
sequence version: OX387309.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 6413417
topology: linear
RO_0000086: SO_0000987
location: 1..6413417
location: region:1-6413417:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6413417:1
position: 6413417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6413417:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1632173..1632372
location: region:1632173-1632372:1
BFO_0000051: feature:1632173-1632372:1:region
SIO_000974: 1b455ce6-2819-4e46-a684-c70b1841b2c9

position:1632173:1
position: 1632173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1632372:1
position: 1632372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1b455ce6-2819-4e46-a684-c70b1841b2c9
SIO_000300: 1
SIO_000628: feature:1632173-1632372:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4682914..4683113
location: region:4682914-4683113:1
BFO_0000051: feature:4682914-4683113:1:region
SIO_000974: 264ba839-62c6-4af9-95bc-a6c45a083d3d

position:4682914:1
position: 4682914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4683113:1
position: 4683113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

264ba839-62c6-4af9-95bc-a6c45a083d3d
SIO_000300: 1
SIO_000628: feature:4682914-4683113:1:region

Shargacucullia verbasci genome assembly, chromosome: 30.
type: Entry
definition: Shargacucullia verbasci genome assembly, chromosome: 30.
sequence version: OX387310.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 5707262
topology: linear
RO_0000086: SO_0000987
location: 1..5707262
location: region:1-5707262:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5707262:1
position: 5707262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5707262:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5569700..5569899
location: region:5569700-5569899:1
BFO_0000051: feature:5569700-5569899:1:region
SIO_000974: 5ea8c485-c70a-4d36-909c-8ff3e5c1cb67

position:5569700:1
position: 5569700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5569899:1
position: 5569899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ea8c485-c70a-4d36-909c-8ff3e5c1cb67
SIO_000300: 1
SIO_000628: feature:5569700-5569899:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987469
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5627900..5628099
location: region:5627900-5628099:1
BFO_0000051: feature:5627900-5628099:1:region
SIO_000974: bc0d6b1e-b430-4f4a-a0e4-faa74c47bb81

position:5627900:1
position: 5627900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5628099:1
position: 5628099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc0d6b1e-b430-4f4a-a0e4-faa74c47bb81
SIO_000300: 1
SIO_000628: feature:5627900-5628099:1:region

Shargacucullia verbasci genome assembly, organelle: mitochondrion.
type: Entry
definition: Shargacucullia verbasci genome assembly, organelle: mitochondrion.
sequence version: OX387311.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: mitochondrion Shargacucullia verbasci
organism: Shargacucullia verbasci
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Cuculliinae; Shargacucullia.
reference: 1
comment: The assembly ilShaVerb5.1 is based on 41x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15317
topology: linear
RO_0000086: SO_0000987
location: 1..15317
location: region:1-15317:1
RO_0002162: 987469

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15317:1
position: 15317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15317:1:source
BFO_0000050: sequence
organism: Shargacucullia verbasci
organelle: mitochondrion
mol type: genomic DNA

Eudonia lacustrata genome assembly, chromosome: 4.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 4.
sequence version: OX387312.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 27410659
topology: linear
RO_0000086: SO_0000987
location: 1..27410659
location: region:1-27410659:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27410659:1
position: 27410659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27410659:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 4
mol type: genomic DNA

1100991
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4264302..4264501
location: region:4264302-4264501:1
BFO_0000051: feature:4264302-4264501:1:region
SIO_000974: e573512d-1fa0-4c03-9bf2-41227d507a25

position:4264302:1
position: 4264302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4264501:1
position: 4264501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e573512d-1fa0-4c03-9bf2-41227d507a25
SIO_000300: 1
SIO_000628: feature:4264302-4264501:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21135674..21135873
location: region:21135674-21135873:1
BFO_0000051: feature:21135674-21135873:1:region
SIO_000974: 07373dc7-6066-47a3-9f29-3ca76a01cf17

position:21135674:1
position: 21135674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21135873:1
position: 21135873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07373dc7-6066-47a3-9f29-3ca76a01cf17
SIO_000300: 1
SIO_000628: feature:21135674-21135873:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22226553..22226752
location: region:22226553-22226752:1
BFO_0000051: feature:22226553-22226752:1:region
SIO_000974: 623130e0-2980-4371-b4d9-18961b41bcdf

position:22226553:1
position: 22226553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22226752:1
position: 22226752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

623130e0-2980-4371-b4d9-18961b41bcdf
SIO_000300: 1
SIO_000628: feature:22226553-22226752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24009423..24009622
location: region:24009423-24009622:1
BFO_0000051: feature:24009423-24009622:1:region
SIO_000974: 20d0e20c-6bb5-4102-8765-e0685ad2e9bc

position:24009423:1
position: 24009423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24009622:1
position: 24009622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

20d0e20c-6bb5-4102-8765-e0685ad2e9bc
SIO_000300: 1
SIO_000628: feature:24009423-24009622:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27118649..27118848
location: region:27118649-27118848:1
BFO_0000051: feature:27118649-27118848:1:region
SIO_000974: 70fe8967-d0dd-4bca-94f7-946f37002d2f

position:27118649:1
position: 27118649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27118848:1
position: 27118848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

70fe8967-d0dd-4bca-94f7-946f37002d2f
SIO_000300: 1
SIO_000628: feature:27118649-27118848:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27250460..27250659
location: region:27250460-27250659:1
BFO_0000051: feature:27250460-27250659:1:region
SIO_000974: 9a3aa123-99b9-4ddb-8328-47ca6d31fd6d

position:27250460:1
position: 27250460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27250659:1
position: 27250659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a3aa123-99b9-4ddb-8328-47ca6d31fd6d
SIO_000300: 1
SIO_000628: feature:27250460-27250659:1:region

Eudonia lacustrata genome assembly, chromosome: 5.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 5.
sequence version: OX387313.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26351089
topology: linear
RO_0000086: SO_0000987
location: 1..26351089
location: region:1-26351089:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26351089:1
position: 26351089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26351089:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1731420..1731619
location: region:1731420-1731619:1
BFO_0000051: feature:1731420-1731619:1:region
SIO_000974: c2c48ad9-5d5a-436b-aa4e-9f29273aad51

position:1731420:1
position: 1731420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1731619:1
position: 1731619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c2c48ad9-5d5a-436b-aa4e-9f29273aad51
SIO_000300: 1
SIO_000628: feature:1731420-1731619:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2717119..2717318
location: region:2717119-2717318:1
BFO_0000051: feature:2717119-2717318:1:region
SIO_000974: 31d96d4d-d032-4db7-83ca-1e3ae6455029

position:2717119:1
position: 2717119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2717318:1
position: 2717318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31d96d4d-d032-4db7-83ca-1e3ae6455029
SIO_000300: 1
SIO_000628: feature:2717119-2717318:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9771835..9772034
location: region:9771835-9772034:1
BFO_0000051: feature:9771835-9772034:1:region
SIO_000974: 34a698fa-c9e3-46ab-9e00-d5a2f34df3d8

position:9771835:1
position: 9771835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9772034:1
position: 9772034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9771835-9772034:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13156653..13156852
location: region:13156653-13156852:1
BFO_0000051: feature:13156653-13156852:1:region
SIO_000974: e7f584f2-c26a-4b4f-8543-23865fef4a45

position:13156653:1
position: 13156653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13156852:1
position: 13156852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e7f584f2-c26a-4b4f-8543-23865fef4a45
SIO_000300: 1
SIO_000628: feature:13156653-13156852:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14203564..14203763
location: region:14203564-14203763:1
BFO_0000051: feature:14203564-14203763:1:region
SIO_000974: 494a83ee-babe-4712-b5bd-fe7441fe95d8

position:14203564:1
position: 14203564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14203763:1
position: 14203763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

494a83ee-babe-4712-b5bd-fe7441fe95d8
SIO_000300: 1
SIO_000628: feature:14203564-14203763:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19435607..19435806
location: region:19435607-19435806:1
BFO_0000051: feature:19435607-19435806:1:region
SIO_000974: e80badf2-9067-4057-8057-d889b02ebafa

position:19435607:1
position: 19435607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19435806:1
position: 19435806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e80badf2-9067-4057-8057-d889b02ebafa
SIO_000300: 1
SIO_000628: feature:19435607-19435806:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19575551..19575750
location: region:19575551-19575750:1
BFO_0000051: feature:19575551-19575750:1:region
SIO_000974: b6fa0eef-63fb-466d-96da-0811dbbcb1ef

position:19575551:1
position: 19575551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19575750:1
position: 19575750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6fa0eef-63fb-466d-96da-0811dbbcb1ef
SIO_000300: 1
SIO_000628: feature:19575551-19575750:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24979662..24979861
location: region:24979662-24979861:1
BFO_0000051: feature:24979662-24979861:1:region
SIO_000974: 7bc81220-b594-48e5-a9af-2d57e21be2d5

position:24979662:1
position: 24979662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24979861:1
position: 24979861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7bc81220-b594-48e5-a9af-2d57e21be2d5
SIO_000300: 1
SIO_000628: feature:24979662-24979861:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26074890..26075089
location: region:26074890-26075089:1
BFO_0000051: feature:26074890-26075089:1:region
SIO_000974: a2aab243-ca3e-4aa6-a9b1-755ec958b8fb

position:26074890:1
position: 26074890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26075089:1
position: 26075089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2aab243-ca3e-4aa6-a9b1-755ec958b8fb
SIO_000300: 1
SIO_000628: feature:26074890-26075089:1:region

Eudonia lacustrata genome assembly, chromosome: 6.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 6.
sequence version: OX387314.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26162671
topology: linear
RO_0000086: SO_0000987
location: 1..26162671
location: region:1-26162671:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26162671:1
position: 26162671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26162671:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2754023..2754222
location: region:2754023-2754222:1
BFO_0000051: feature:2754023-2754222:1:region
SIO_000974: 1db9c931-c31a-48a8-8169-39e4a52ea05b

position:2754023:1
position: 2754023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2754222:1
position: 2754222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1db9c931-c31a-48a8-8169-39e4a52ea05b
SIO_000300: 1
SIO_000628: feature:2754023-2754222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3219411..3219610
location: region:3219411-3219610:1
BFO_0000051: feature:3219411-3219610:1:region
SIO_000974: 6422dd96-194c-4889-8f44-54a526b0b02f

position:3219411:1
position: 3219411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3219610:1
position: 3219610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6422dd96-194c-4889-8f44-54a526b0b02f
SIO_000300: 1
SIO_000628: feature:3219411-3219610:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12685770..12685969
location: region:12685770-12685969:1
BFO_0000051: feature:12685770-12685969:1:region
SIO_000974: 475ad92f-5051-4360-b2bf-c7d54c170ae3

position:12685770:1
position: 12685770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12685969:1
position: 12685969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

475ad92f-5051-4360-b2bf-c7d54c170ae3
SIO_000300: 1
SIO_000628: feature:12685770-12685969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14883970..14884169
location: region:14883970-14884169:1
BFO_0000051: feature:14883970-14884169:1:region
SIO_000974: f3e1ecda-297a-421f-b7ce-e19675b4b1eb

position:14883970:1
position: 14883970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14884169:1
position: 14884169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:14883970-14884169:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19261478..19261677
location: region:19261478-19261677:1
BFO_0000051: feature:19261478-19261677:1:region
SIO_000974: c062be4c-8605-4d9e-8c6e-5f70081287af

position:19261478:1
position: 19261478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19261677:1
position: 19261677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c062be4c-8605-4d9e-8c6e-5f70081287af
SIO_000300: 1
SIO_000628: feature:19261478-19261677:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19645985..19646184
location: region:19645985-19646184:1
BFO_0000051: feature:19645985-19646184:1:region
SIO_000974: 6e76cdae-716c-44d8-b1f3-0d8b5f6b538b

position:19645985:1
position: 19645985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19646184:1
position: 19646184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6e76cdae-716c-44d8-b1f3-0d8b5f6b538b
SIO_000300: 1
SIO_000628: feature:19645985-19646184:1:region

Eudonia lacustrata genome assembly, chromosome: 7.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 7.
sequence version: OX387315.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26108427
topology: linear
RO_0000086: SO_0000987
location: 1..26108427
location: region:1-26108427:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26108427:1
position: 26108427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26108427:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4024397..4024596
location: region:4024397-4024596:1
BFO_0000051: feature:4024397-4024596:1:region
SIO_000974: 5997cced-4109-46e5-8637-610875e0f04e

position:4024397:1
position: 4024397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4024596:1
position: 4024596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5997cced-4109-46e5-8637-610875e0f04e
SIO_000300: 1
SIO_000628: feature:4024397-4024596:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8576972..8577171
location: region:8576972-8577171:1
BFO_0000051: feature:8576972-8577171:1:region
SIO_000974: b7668d92-01bd-48c1-a8aa-6a59d1dbfcf1

position:8576972:1
position: 8576972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8577171:1
position: 8577171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7668d92-01bd-48c1-a8aa-6a59d1dbfcf1
SIO_000300: 1
SIO_000628: feature:8576972-8577171:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9180657..9180856
location: region:9180657-9180856:1
BFO_0000051: feature:9180657-9180856:1:region
SIO_000974: e12d131c-9ce1-48fa-8d9d-7cc86481cadf

position:9180657:1
position: 9180657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9180856:1
position: 9180856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e12d131c-9ce1-48fa-8d9d-7cc86481cadf
SIO_000300: 1
SIO_000628: feature:9180657-9180856:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11070401..11070600
location: region:11070401-11070600:1
BFO_0000051: feature:11070401-11070600:1:region
SIO_000974: 94dcec8a-29d6-4d23-ba2b-51e13d530f38

position:11070401:1
position: 11070401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11070600:1
position: 11070600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94dcec8a-29d6-4d23-ba2b-51e13d530f38
SIO_000300: 1
SIO_000628: feature:11070401-11070600:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18306825..18307024
location: region:18306825-18307024:1
BFO_0000051: feature:18306825-18307024:1:region
SIO_000974: e3302873-a060-440f-b0c5-3ddbde9e124e

position:18306825:1
position: 18306825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18307024:1
position: 18307024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e3302873-a060-440f-b0c5-3ddbde9e124e
SIO_000300: 1
SIO_000628: feature:18306825-18307024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22323352..22323551
location: region:22323352-22323551:1
BFO_0000051: feature:22323352-22323551:1:region
SIO_000974: b401d431-4d01-4980-b68e-ab5f3fa37e41

position:22323352:1
position: 22323352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22323551:1
position: 22323551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b401d431-4d01-4980-b68e-ab5f3fa37e41
SIO_000300: 1
SIO_000628: feature:22323352-22323551:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23893135..23893334
location: region:23893135-23893334:1
BFO_0000051: feature:23893135-23893334:1:region
SIO_000974: 9c73374d-2006-4066-bfdd-88900f266c63

position:23893135:1
position: 23893135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23893334:1
position: 23893334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c73374d-2006-4066-bfdd-88900f266c63
SIO_000300: 1
SIO_000628: feature:23893135-23893334:1:region

Eudonia lacustrata genome assembly, chromosome: 8.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 8.
sequence version: OX387316.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 25962886
topology: linear
RO_0000086: SO_0000987
location: 1..25962886
location: region:1-25962886:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25962886:1
position: 25962886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25962886:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5089966..5090165
location: region:5089966-5090165:1
BFO_0000051: feature:5089966-5090165:1:region
SIO_000974: 6c4b4cfc-d725-4108-a134-d18bf83a2703

position:5089966:1
position: 5089966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5090165:1
position: 5090165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c4b4cfc-d725-4108-a134-d18bf83a2703
SIO_000300: 1
SIO_000628: feature:5089966-5090165:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5597899..5598098
location: region:5597899-5598098:1
BFO_0000051: feature:5597899-5598098:1:region
SIO_000974: 710608d0-ada7-491b-a63b-1707cacfdbc6

position:5597899:1
position: 5597899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5598098:1
position: 5598098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

710608d0-ada7-491b-a63b-1707cacfdbc6
SIO_000300: 1
SIO_000628: feature:5597899-5598098:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6141152..6141351
location: region:6141152-6141351:1
BFO_0000051: feature:6141152-6141351:1:region
SIO_000974: ca181da3-b60e-417c-8739-7e3dc996fd80

position:6141152:1
position: 6141152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6141351:1
position: 6141351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ca181da3-b60e-417c-8739-7e3dc996fd80
SIO_000300: 1
SIO_000628: feature:6141152-6141351:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8045629..8045828
location: region:8045629-8045828:1
BFO_0000051: feature:8045629-8045828:1:region
SIO_000974: 7732355f-8ed4-4ed7-bd3a-5f5ae49253fa

position:8045629:1
position: 8045629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8045828:1
position: 8045828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7732355f-8ed4-4ed7-bd3a-5f5ae49253fa
SIO_000300: 1
SIO_000628: feature:8045629-8045828:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16086071..16086270
location: region:16086071-16086270:1
BFO_0000051: feature:16086071-16086270:1:region
SIO_000974: 4c6aba93-6062-4a3f-923d-db551d6b99cf

position:16086071:1
position: 16086071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16086270:1
position: 16086270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c6aba93-6062-4a3f-923d-db551d6b99cf
SIO_000300: 1
SIO_000628: feature:16086071-16086270:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19935271..19935470
location: region:19935271-19935470:1
BFO_0000051: feature:19935271-19935470:1:region
SIO_000974: 6c2d78aa-8fbc-4024-8b8a-c9d33ccf1eb4

position:19935271:1
position: 19935271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19935470:1
position: 19935470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6c2d78aa-8fbc-4024-8b8a-c9d33ccf1eb4
SIO_000300: 1
SIO_000628: feature:19935271-19935470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21802457..21802656
location: region:21802457-21802656:1
BFO_0000051: feature:21802457-21802656:1:region
SIO_000974: cf71f26f-006e-46d0-bba3-1f1b17cbf6d1

position:21802457:1
position: 21802457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21802656:1
position: 21802656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf71f26f-006e-46d0-bba3-1f1b17cbf6d1
SIO_000300: 1
SIO_000628: feature:21802457-21802656:1:region

Eudonia lacustrata genome assembly, chromosome: 9.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 9.
sequence version: OX387317.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 25809844
topology: linear
RO_0000086: SO_0000987
location: 1..25809844
location: region:1-25809844:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25809844:1
position: 25809844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25809844:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1267116..1267315
location: region:1267116-1267315:1
BFO_0000051: feature:1267116-1267315:1:region
SIO_000974: 18343ab4-484c-45f5-8b20-bbc84a3a39e8

position:1267116:1
position: 1267116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1267315:1
position: 1267315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18343ab4-484c-45f5-8b20-bbc84a3a39e8
SIO_000300: 1
SIO_000628: feature:1267116-1267315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8973641..8973840
location: region:8973641-8973840:1
BFO_0000051: feature:8973641-8973840:1:region
SIO_000974: 0c64004a-1806-4f53-b839-e941e6160039

position:8973641:1
position: 8973641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8973840:1
position: 8973840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c64004a-1806-4f53-b839-e941e6160039
SIO_000300: 1
SIO_000628: feature:8973641-8973840:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15696164..15696363
location: region:15696164-15696363:1
BFO_0000051: feature:15696164-15696363:1:region
SIO_000974: 83c49510-92bc-462d-938e-5670b89cdaa8

position:15696164:1
position: 15696164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15696363:1
position: 15696363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

83c49510-92bc-462d-938e-5670b89cdaa8
SIO_000300: 1
SIO_000628: feature:15696164-15696363:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16611633..16611832
location: region:16611633-16611832:1
BFO_0000051: feature:16611633-16611832:1:region
SIO_000974: ec21d0ab-22de-498c-9a6c-c7f88fee2df1

position:16611633:1
position: 16611633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16611832:1
position: 16611832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec21d0ab-22de-498c-9a6c-c7f88fee2df1
SIO_000300: 1
SIO_000628: feature:16611633-16611832:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21923854..21924053
location: region:21923854-21924053:1
BFO_0000051: feature:21923854-21924053:1:region
SIO_000974: 27b7ec72-a5fd-40e9-8de7-219859dedc8f

position:21923854:1
position: 21923854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21924053:1
position: 21924053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27b7ec72-a5fd-40e9-8de7-219859dedc8f
SIO_000300: 1
SIO_000628: feature:21923854-21924053:1:region

Eudonia lacustrata genome assembly, chromosome: 10.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 10.
sequence version: OX387318.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24929017
topology: linear
RO_0000086: SO_0000987
location: 1..24929017
location: region:1-24929017:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24929017:1
position: 24929017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24929017:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 514797..514996
location: region:514797-514996:1
BFO_0000051: feature:514797-514996:1:region
SIO_000974: 679d63d9-859e-4857-97f7-81bf16e5c83b

position:514797:1
position: 514797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514996:1
position: 514996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

679d63d9-859e-4857-97f7-81bf16e5c83b
SIO_000300: 1
SIO_000628: feature:514797-514996:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9785061..9785260
location: region:9785061-9785260:1
BFO_0000051: feature:9785061-9785260:1:region
SIO_000974: 2843c712-535a-4e27-9b7a-837bbd225eaa

position:9785061:1
position: 9785061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9785260:1
position: 9785260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2843c712-535a-4e27-9b7a-837bbd225eaa
SIO_000300: 1
SIO_000628: feature:9785061-9785260:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18034211..18034410
location: region:18034211-18034410:1
BFO_0000051: feature:18034211-18034410:1:region
SIO_000974: 039696be-4020-4304-ae7b-f189c05f37ea

position:18034211:1
position: 18034211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18034410:1
position: 18034410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

039696be-4020-4304-ae7b-f189c05f37ea
SIO_000300: 1
SIO_000628: feature:18034211-18034410:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18092856..18093055
location: region:18092856-18093055:1
BFO_0000051: feature:18092856-18093055:1:region
SIO_000974: a5bb46ef-2d63-4c60-99d3-45e509d04ecf

position:18092856:1
position: 18092856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18093055:1
position: 18093055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5bb46ef-2d63-4c60-99d3-45e509d04ecf
SIO_000300: 1
SIO_000628: feature:18092856-18093055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20157896..20158095
location: region:20157896-20158095:1
BFO_0000051: feature:20157896-20158095:1:region
SIO_000974: 81f926f5-7f56-455c-889d-f8ae7ebdd0e0

position:20157896:1
position: 20157896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20158095:1
position: 20158095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

81f926f5-7f56-455c-889d-f8ae7ebdd0e0
SIO_000300: 1
SIO_000628: feature:20157896-20158095:1:region

Eudonia lacustrata genome assembly, chromosome: 11.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 11.
sequence version: OX387319.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24461152
topology: linear
RO_0000086: SO_0000987
location: 1..24461152
location: region:1-24461152:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24461152:1
position: 24461152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24461152:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 131399..131598
location: region:131399-131598:1
BFO_0000051: feature:131399-131598:1:region
SIO_000974: 2853df50-d5f5-4ff4-9c04-15a820d03581

position:131399:1
position: 131399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131598:1
position: 131598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2853df50-d5f5-4ff4-9c04-15a820d03581
SIO_000300: 1
SIO_000628: feature:131399-131598:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8726590..8726789
location: region:8726590-8726789:1
BFO_0000051: feature:8726590-8726789:1:region
SIO_000974: e90d9ac9-e400-4df7-9a99-8e993aa9921c

position:8726590:1
position: 8726590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8726789:1
position: 8726789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e90d9ac9-e400-4df7-9a99-8e993aa9921c
SIO_000300: 1
SIO_000628: feature:8726590-8726789:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13664709..13664908
location: region:13664709-13664908:1
BFO_0000051: feature:13664709-13664908:1:region
SIO_000974: faf3fdac-4b91-4b6b-b53b-1dcab40e6338

position:13664709:1
position: 13664709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13664908:1
position: 13664908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

faf3fdac-4b91-4b6b-b53b-1dcab40e6338
SIO_000300: 1
SIO_000628: feature:13664709-13664908:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18721122..18721321
location: region:18721122-18721321:1
BFO_0000051: feature:18721122-18721321:1:region
SIO_000974: c22556b4-d836-4928-8528-5d6dbc73e7a7

position:18721122:1
position: 18721122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18721321:1
position: 18721321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c22556b4-d836-4928-8528-5d6dbc73e7a7
SIO_000300: 1
SIO_000628: feature:18721122-18721321:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19933546..19933745
location: region:19933546-19933745:1
BFO_0000051: feature:19933546-19933745:1:region
SIO_000974: 161f783d-eafe-4064-adbb-1732523d091d

position:19933546:1
position: 19933546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19933745:1
position: 19933745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

161f783d-eafe-4064-adbb-1732523d091d
SIO_000300: 1
SIO_000628: feature:19933546-19933745:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21738388..21738587
location: region:21738388-21738587:1
BFO_0000051: feature:21738388-21738587:1:region
SIO_000974: 05341b53-7401-422a-9987-95b8e406a41e

position:21738388:1
position: 21738388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21738587:1
position: 21738587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05341b53-7401-422a-9987-95b8e406a41e
SIO_000300: 1
SIO_000628: feature:21738388-21738587:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23714801..23715000
location: region:23714801-23715000:1
BFO_0000051: feature:23714801-23715000:1:region
SIO_000974: e37dd986-067f-462f-a57b-098b9c059fd0

position:23714801:1
position: 23714801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23715000:1
position: 23715000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e37dd986-067f-462f-a57b-098b9c059fd0
SIO_000300: 1
SIO_000628: feature:23714801-23715000:1:region

Eudonia lacustrata genome assembly, chromosome: 12.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 12.
sequence version: OX387320.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23533653
topology: linear
RO_0000086: SO_0000987
location: 1..23533653
location: region:1-23533653:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23533653:1
position: 23533653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23533653:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7016232..7016431
location: region:7016232-7016431:1
BFO_0000051: feature:7016232-7016431:1:region
SIO_000974: bbfcb00a-b1dd-411e-af28-ce403f931d74

position:7016232:1
position: 7016232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7016431:1
position: 7016431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bbfcb00a-b1dd-411e-af28-ce403f931d74
SIO_000300: 1
SIO_000628: feature:7016232-7016431:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9633432..9633631
location: region:9633432-9633631:1
BFO_0000051: feature:9633432-9633631:1:region
SIO_000974: a84f428b-be9a-41a6-9e0c-0a3bfff6974a

position:9633432:1
position: 9633432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9633631:1
position: 9633631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a84f428b-be9a-41a6-9e0c-0a3bfff6974a
SIO_000300: 1
SIO_000628: feature:9633432-9633631:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10570152..10570351
location: region:10570152-10570351:1
BFO_0000051: feature:10570152-10570351:1:region
SIO_000974: 4c418d11-602c-4e6e-a84c-700da0a61eff

position:10570152:1
position: 10570152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10570351:1
position: 10570351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c418d11-602c-4e6e-a84c-700da0a61eff
SIO_000300: 1
SIO_000628: feature:10570152-10570351:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17993116..17993315
location: region:17993116-17993315:1
BFO_0000051: feature:17993116-17993315:1:region
SIO_000974: 5931048e-63d1-4d92-9206-caead1491a1f

position:17993116:1
position: 17993116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17993315:1
position: 17993315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5931048e-63d1-4d92-9206-caead1491a1f
SIO_000300: 1
SIO_000628: feature:17993116-17993315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21452340..21452539
location: region:21452340-21452539:1
BFO_0000051: feature:21452340-21452539:1:region
SIO_000974: 097241e8-8022-4415-b164-8977693adbac

position:21452340:1
position: 21452340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21452539:1
position: 21452539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:21452340-21452539:1:region

Eudonia lacustrata genome assembly, chromosome: 13.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 13.
sequence version: OX387321.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 23321896
topology: linear
RO_0000086: SO_0000987
location: 1..23321896
location: region:1-23321896:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23321896:1
position: 23321896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23321896:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1963703..1963902
location: region:1963703-1963902:1
BFO_0000051: feature:1963703-1963902:1:region
SIO_000974: 31d1fb51-3b31-48c9-b33c-bf78c8942533

position:1963703:1
position: 1963703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1963902:1
position: 1963902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31d1fb51-3b31-48c9-b33c-bf78c8942533
SIO_000300: 1
SIO_000628: feature:1963703-1963902:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16323809..16324008
location: region:16323809-16324008:1
BFO_0000051: feature:16323809-16324008:1:region
SIO_000974: 651d4f15-ad28-4ccb-bf30-9a3ae1fb5210

position:16323809:1
position: 16323809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16324008:1
position: 16324008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:16323809-16324008:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18979247..18979446
location: region:18979247-18979446:1
BFO_0000051: feature:18979247-18979446:1:region
SIO_000974: cecd654c-b328-4437-a7f5-4c08fc77c3c0

position:18979247:1
position: 18979247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18979446:1
position: 18979446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cecd654c-b328-4437-a7f5-4c08fc77c3c0
SIO_000300: 1
SIO_000628: feature:18979247-18979446:1:region

Eudonia lacustrata genome assembly, chromosome: 14.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 14.
sequence version: OX387322.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22609340
topology: linear
RO_0000086: SO_0000987
location: 1..22609340
location: region:1-22609340:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22609340:1
position: 22609340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22609340:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19688290..19688489
location: region:19688290-19688489:1
BFO_0000051: feature:19688290-19688489:1:region
SIO_000974: 77abc856-2af4-455f-ad77-0fe399c7e0d6

position:19688290:1
position: 19688290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19688489:1
position: 19688489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

77abc856-2af4-455f-ad77-0fe399c7e0d6
SIO_000300: 1
SIO_000628: feature:19688290-19688489:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21106794..21106993
location: region:21106794-21106993:1
BFO_0000051: feature:21106794-21106993:1:region
SIO_000974: d5e70170-38d2-4c22-bc95-7ee7199792e2

position:21106794:1
position: 21106794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21106993:1
position: 21106993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d5e70170-38d2-4c22-bc95-7ee7199792e2
SIO_000300: 1
SIO_000628: feature:21106794-21106993:1:region

Eudonia lacustrata genome assembly, chromosome: 15.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 15.
sequence version: OX387323.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22573880
topology: linear
RO_0000086: SO_0000987
location: 1..22573880
location: region:1-22573880:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22573880:1
position: 22573880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22573880:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5426378..5426577
location: region:5426378-5426577:1
BFO_0000051: feature:5426378-5426577:1:region
SIO_000974: ed44b294-17c5-41bc-8ffa-947280e016c3

position:5426378:1
position: 5426378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5426577:1
position: 5426577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ed44b294-17c5-41bc-8ffa-947280e016c3
SIO_000300: 1
SIO_000628: feature:5426378-5426577:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5992082..5992281
location: region:5992082-5992281:1
BFO_0000051: feature:5992082-5992281:1:region
SIO_000974: cbce8141-3f75-43e4-9d94-5445a809ae02

position:5992082:1
position: 5992082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5992281:1
position: 5992281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cbce8141-3f75-43e4-9d94-5445a809ae02
SIO_000300: 1
SIO_000628: feature:5992082-5992281:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6456303..6456502
location: region:6456303-6456502:1
BFO_0000051: feature:6456303-6456502:1:region
SIO_000974: 77677023-6c34-47d4-beb7-4fd6a91c5f29

position:6456303:1
position: 6456303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6456502:1
position: 6456502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

77677023-6c34-47d4-beb7-4fd6a91c5f29
SIO_000300: 1
SIO_000628: feature:6456303-6456502:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11261503..11261702
location: region:11261503-11261702:1
BFO_0000051: feature:11261503-11261702:1:region
SIO_000974: cd46c071-c794-4bb5-83c8-1866073324bb

position:11261503:1
position: 11261503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11261702:1
position: 11261702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cd46c071-c794-4bb5-83c8-1866073324bb
SIO_000300: 1
SIO_000628: feature:11261503-11261702:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12867652..12867851
location: region:12867652-12867851:1
BFO_0000051: feature:12867652-12867851:1:region
SIO_000974: 66643583-2136-493a-a2b5-85b24a9d541e

position:12867652:1
position: 12867652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12867851:1
position: 12867851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

66643583-2136-493a-a2b5-85b24a9d541e
SIO_000300: 1
SIO_000628: feature:12867652-12867851:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16819852..16820051
location: region:16819852-16820051:1
BFO_0000051: feature:16819852-16820051:1:region
SIO_000974: 07852ab8-2469-44a2-b1cd-fe3c173d83b9

position:16819852:1
position: 16819852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16820051:1
position: 16820051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07852ab8-2469-44a2-b1cd-fe3c173d83b9
SIO_000300: 1
SIO_000628: feature:16819852-16820051:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17808681..17808880
location: region:17808681-17808880:1
BFO_0000051: feature:17808681-17808880:1:region
SIO_000974: 8e91c1b0-9293-4231-8141-1f29ba51e040

position:17808681:1
position: 17808681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17808880:1
position: 17808880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e91c1b0-9293-4231-8141-1f29ba51e040
SIO_000300: 1
SIO_000628: feature:17808681-17808880:1:region

Eudonia lacustrata genome assembly, chromosome: 16.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 16.
sequence version: OX387324.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22485187
topology: linear
RO_0000086: SO_0000987
location: 1..22485187
location: region:1-22485187:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22485187:1
position: 22485187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22485187:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 254784..254983
location: region:254784-254983:1
BFO_0000051: feature:254784-254983:1:region
SIO_000974: fd0ff22b-8d45-43b3-9411-1f2052f4a010

position:254784:1
position: 254784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254983:1
position: 254983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd0ff22b-8d45-43b3-9411-1f2052f4a010
SIO_000300: 1
SIO_000628: feature:254784-254983:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5440735..5440934
location: region:5440735-5440934:1
BFO_0000051: feature:5440735-5440934:1:region
SIO_000974: 440226bf-ca29-420b-a937-295d5fad03a0

position:5440735:1
position: 5440735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5440934:1
position: 5440934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

440226bf-ca29-420b-a937-295d5fad03a0
SIO_000300: 1
SIO_000628: feature:5440735-5440934:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9482618..9482817
location: region:9482618-9482817:1
BFO_0000051: feature:9482618-9482817:1:region
SIO_000974: f98a8ac3-9381-4ced-81d2-a4f4d94a31f6

position:9482618:1
position: 9482618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9482817:1
position: 9482817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f98a8ac3-9381-4ced-81d2-a4f4d94a31f6
SIO_000300: 1
SIO_000628: feature:9482618-9482817:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17055931..17056130
location: region:17055931-17056130:1
BFO_0000051: feature:17055931-17056130:1:region
SIO_000974: 2f8d7959-0ba9-4c48-b38d-b3fa3a6c707a

position:17055931:1
position: 17055931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17056130:1
position: 17056130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2f8d7959-0ba9-4c48-b38d-b3fa3a6c707a
SIO_000300: 1
SIO_000628: feature:17055931-17056130:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19846263..19846462
location: region:19846263-19846462:1
BFO_0000051: feature:19846263-19846462:1:region
SIO_000974: 0391b539-6f74-43a9-a5eb-b9a79796e72f

position:19846263:1
position: 19846263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19846462:1
position: 19846462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0391b539-6f74-43a9-a5eb-b9a79796e72f
SIO_000300: 1
SIO_000628: feature:19846263-19846462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21735056..21735255
location: region:21735056-21735255:1
BFO_0000051: feature:21735056-21735255:1:region
SIO_000974: af1ecd6d-4322-49b4-9ce5-4e43eaa21da4

position:21735056:1
position: 21735056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21735255:1
position: 21735255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af1ecd6d-4322-49b4-9ce5-4e43eaa21da4
SIO_000300: 1
SIO_000628: feature:21735056-21735255:1:region

Eudonia lacustrata genome assembly, chromosome: 17.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 17.
sequence version: OX387325.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 22380950
topology: linear
RO_0000086: SO_0000987
location: 1..22380950
location: region:1-22380950:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22380950:1
position: 22380950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22380950:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 91189..91388
location: region:91189-91388:1
BFO_0000051: feature:91189-91388:1:region
SIO_000974: a702d9ef-409b-4c08-bedd-346ab019f918

position:91189:1
position: 91189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91388:1
position: 91388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a702d9ef-409b-4c08-bedd-346ab019f918
SIO_000300: 1
SIO_000628: feature:91189-91388:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1747521..1747720
location: region:1747521-1747720:1
BFO_0000051: feature:1747521-1747720:1:region
SIO_000974: 4dffe567-1870-4f8c-86c0-a84bd8a75fc7

position:1747521:1
position: 1747521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1747720:1
position: 1747720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4dffe567-1870-4f8c-86c0-a84bd8a75fc7
SIO_000300: 1
SIO_000628: feature:1747521-1747720:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4654529..4654728
location: region:4654529-4654728:1
BFO_0000051: feature:4654529-4654728:1:region
SIO_000974: 86207ed9-89ad-44bd-9b5a-3ac5b7c6fc9b

position:4654529:1
position: 4654529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4654728:1
position: 4654728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86207ed9-89ad-44bd-9b5a-3ac5b7c6fc9b
SIO_000300: 1
SIO_000628: feature:4654529-4654728:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8550209..8550408
location: region:8550209-8550408:1
BFO_0000051: feature:8550209-8550408:1:region
SIO_000974: 2fb280c0-615a-49ed-bc4e-564968599a77

position:8550209:1
position: 8550209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8550408:1
position: 8550408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2fb280c0-615a-49ed-bc4e-564968599a77
SIO_000300: 1
SIO_000628: feature:8550209-8550408:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14129084..14129283
location: region:14129084-14129283:1
BFO_0000051: feature:14129084-14129283:1:region
SIO_000974: 0401dd5b-4a0a-43f5-b61b-4a97b835d367

position:14129084:1
position: 14129084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14129283:1
position: 14129283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0401dd5b-4a0a-43f5-b61b-4a97b835d367
SIO_000300: 1
SIO_000628: feature:14129084-14129283:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14902543..14902742
location: region:14902543-14902742:1
BFO_0000051: feature:14902543-14902742:1:region
SIO_000974: f4551f01-8d34-4693-b025-721a21e5f76e

position:14902543:1
position: 14902543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14902742:1
position: 14902742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f4551f01-8d34-4693-b025-721a21e5f76e
SIO_000300: 1
SIO_000628: feature:14902543-14902742:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18681637..18681836
location: region:18681637-18681836:1
BFO_0000051: feature:18681637-18681836:1:region
SIO_000974: 35862591-cdc9-4d7b-b004-44b85b254a52

position:18681637:1
position: 18681637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18681836:1
position: 18681836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35862591-cdc9-4d7b-b004-44b85b254a52
SIO_000300: 1
SIO_000628: feature:18681637-18681836:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19008312..19008511
location: region:19008312-19008511:1
BFO_0000051: feature:19008312-19008511:1:region
SIO_000974: a3fc021c-c2d3-4d8a-9400-87e49295e154

position:19008312:1
position: 19008312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19008511:1
position: 19008511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3fc021c-c2d3-4d8a-9400-87e49295e154
SIO_000300: 1
SIO_000628: feature:19008312-19008511:1:region

Eudonia lacustrata genome assembly, chromosome: 18.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 18.
sequence version: OX387326.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21598744
topology: linear
RO_0000086: SO_0000987
location: 1..21598744
location: region:1-21598744:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21598744:1
position: 21598744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21598744:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 159001..159200
location: region:159001-159200:1
BFO_0000051: feature:159001-159200:1:region
SIO_000974: 136eac77-5c19-447f-bc6b-bc2c31a30ce7

position:159001:1
position: 159001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159200:1
position: 159200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

136eac77-5c19-447f-bc6b-bc2c31a30ce7
SIO_000300: 1
SIO_000628: feature:159001-159200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4445009..4445208
location: region:4445009-4445208:1
BFO_0000051: feature:4445009-4445208:1:region
SIO_000974: 333ff819-b27e-4aaa-8501-0d8768458b8d

position:4445009:1
position: 4445009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4445208:1
position: 4445208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

333ff819-b27e-4aaa-8501-0d8768458b8d
SIO_000300: 1
SIO_000628: feature:4445009-4445208:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4822061..4822260
location: region:4822061-4822260:1
BFO_0000051: feature:4822061-4822260:1:region
SIO_000974: a3416409-08c3-41b0-93ff-9608bf5c2da9

position:4822061:1
position: 4822061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4822260:1
position: 4822260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3416409-08c3-41b0-93ff-9608bf5c2da9
SIO_000300: 1
SIO_000628: feature:4822061-4822260:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9099458..9099657
location: region:9099458-9099657:1
BFO_0000051: feature:9099458-9099657:1:region
SIO_000974: 2643c9d3-931e-4d2f-a5ff-9b06fc731637

position:9099458:1
position: 9099458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9099657:1
position: 9099657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2643c9d3-931e-4d2f-a5ff-9b06fc731637
SIO_000300: 1
SIO_000628: feature:9099458-9099657:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16387158..16387357
location: region:16387158-16387357:1
BFO_0000051: feature:16387158-16387357:1:region
SIO_000974: f382a038-7390-4798-8da5-e975908506f4

position:16387158:1
position: 16387158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16387357:1
position: 16387357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f382a038-7390-4798-8da5-e975908506f4
SIO_000300: 1
SIO_000628: feature:16387158-16387357:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17085955..17086154
location: region:17085955-17086154:1
BFO_0000051: feature:17085955-17086154:1:region
SIO_000974: 0fb66329-48ea-4b4b-ac66-9d3b1c939955

position:17085955:1
position: 17085955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17086154:1
position: 17086154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0fb66329-48ea-4b4b-ac66-9d3b1c939955
SIO_000300: 1
SIO_000628: feature:17085955-17086154:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20899699..20899898
location: region:20899699-20899898:1
BFO_0000051: feature:20899699-20899898:1:region
SIO_000974: 57ed9239-8501-4f07-b4bb-7e632820286d

position:20899699:1
position: 20899699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20899898:1
position: 20899898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57ed9239-8501-4f07-b4bb-7e632820286d
SIO_000300: 1
SIO_000628: feature:20899699-20899898:1:region

Eudonia lacustrata genome assembly, chromosome: 19.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 19.
sequence version: OX387327.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20255627
topology: linear
RO_0000086: SO_0000987
location: 1..20255627
location: region:1-20255627:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20255627:1
position: 20255627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20255627:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 227676..227875
location: region:227676-227875:1
BFO_0000051: feature:227676-227875:1:region
SIO_000974: b9a52503-b00f-4bde-90a4-d8419bc72283

position:227676:1
position: 227676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227875:1
position: 227875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b9a52503-b00f-4bde-90a4-d8419bc72283
SIO_000300: 1
SIO_000628: feature:227676-227875:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 252130..252329
location: region:252130-252329:1
BFO_0000051: feature:252130-252329:1:region
SIO_000974: 22b1ffdb-d2eb-4358-b3b5-5db700301425

position:252130:1
position: 252130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252329:1
position: 252329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

22b1ffdb-d2eb-4358-b3b5-5db700301425
SIO_000300: 1
SIO_000628: feature:252130-252329:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14750330..14750529
location: region:14750330-14750529:1
BFO_0000051: feature:14750330-14750529:1:region
SIO_000974: b3a19265-e60e-4e33-928f-d2b59a210a8a

position:14750330:1
position: 14750330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14750529:1
position: 14750529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b3a19265-e60e-4e33-928f-d2b59a210a8a
SIO_000300: 1
SIO_000628: feature:14750330-14750529:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15827476..15827675
location: region:15827476-15827675:1
BFO_0000051: feature:15827476-15827675:1:region
SIO_000974: 57fe0e51-fb57-4221-a5f7-f261bc5ad796

position:15827476:1
position: 15827476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15827675:1
position: 15827675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57fe0e51-fb57-4221-a5f7-f261bc5ad796
SIO_000300: 1
SIO_000628: feature:15827476-15827675:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19867423..19867622
location: region:19867423-19867622:1
BFO_0000051: feature:19867423-19867622:1:region
SIO_000974: dc5915be-1037-42be-a4e6-341f456e5d09

position:19867423:1
position: 19867423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19867622:1
position: 19867622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc5915be-1037-42be-a4e6-341f456e5d09
SIO_000300: 1
SIO_000628: feature:19867423-19867622:1:region

Eudonia lacustrata genome assembly, chromosome: 20.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 20.
sequence version: OX387328.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19580746
topology: linear
RO_0000086: SO_0000987
location: 1..19580746
location: region:1-19580746:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19580746:1
position: 19580746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19580746:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 268233..268432
location: region:268233-268432:1
BFO_0000051: feature:268233-268432:1:region
SIO_000974: c3e3265f-e6e9-4a86-a49f-d36c9fccc6e8

position:268233:1
position: 268233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268432:1
position: 268432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3e3265f-e6e9-4a86-a49f-d36c9fccc6e8
SIO_000300: 1
SIO_000628: feature:268233-268432:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7074046..7074245
location: region:7074046-7074245:1
BFO_0000051: feature:7074046-7074245:1:region
SIO_000974: a49cacf9-2f48-434e-9b3d-873eeb65107c

position:7074046:1
position: 7074046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7074245:1
position: 7074245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a49cacf9-2f48-434e-9b3d-873eeb65107c
SIO_000300: 1
SIO_000628: feature:7074046-7074245:1:region

Eudonia lacustrata genome assembly, chromosome: 21.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 21.
sequence version: OX387329.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19349257
topology: linear
RO_0000086: SO_0000987
location: 1..19349257
location: region:1-19349257:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19349257:1
position: 19349257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19349257:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 584245..584444
location: region:584245-584444:1
BFO_0000051: feature:584245-584444:1:region
SIO_000974: 703e4010-5575-4175-9250-98d70dba26cb

position:584245:1
position: 584245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:584444:1
position: 584444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

703e4010-5575-4175-9250-98d70dba26cb
SIO_000300: 1
SIO_000628: feature:584245-584444:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 994899..995098
location: region:994899-995098:1
BFO_0000051: feature:994899-995098:1:region
SIO_000974: 8b44eea3-71c4-437e-b596-8bae8e5edaf0

position:994899:1
position: 994899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:995098:1
position: 995098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:994899-995098:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2006184..2006383
location: region:2006184-2006383:1
BFO_0000051: feature:2006184-2006383:1:region
SIO_000974: 6c384e32-1087-48e7-8cae-cd0192f79f12

position:2006184:1
position: 2006184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2006383:1
position: 2006383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2006184-2006383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5684105..5684304
location: region:5684105-5684304:1
BFO_0000051: feature:5684105-5684304:1:region
SIO_000974: 39a3acbf-2092-4c29-a157-91dec19cffc1

position:5684105:1
position: 5684105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5684304:1
position: 5684304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5684105-5684304:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9548444..9548643
location: region:9548444-9548643:1
BFO_0000051: feature:9548444-9548643:1:region
SIO_000974: fda67b18-5abc-4802-9197-f26a59f5512b

position:9548444:1
position: 9548444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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position: 9548643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9548444-9548643:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13588939..13589138
location: region:13588939-13589138:1
BFO_0000051: feature:13588939-13589138:1:region
SIO_000974: 9248f6bc-c627-41eb-92b5-f273eccf9679

position:13588939:1
position: 13588939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13589138:1
position: 13589138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:13588939-13589138:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14963878..14964077
location: region:14963878-14964077:1
BFO_0000051: feature:14963878-14964077:1:region
SIO_000974: e2129c48-b9ae-4295-a862-42875fa76469

position:14963878:1
position: 14963878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14964077:1
position: 14964077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:14963878-14964077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18171026..18171225
location: region:18171026-18171225:1
BFO_0000051: feature:18171026-18171225:1:region
SIO_000974: 2870ead0-0932-4a39-b548-d7cca944d161

position:18171026:1
position: 18171026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18171225:1
position: 18171225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:18171026-18171225:1:region

Eudonia lacustrata genome assembly, chromosome: 22.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 22.
sequence version: OX387330.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18467115
topology: linear
RO_0000086: SO_0000987
location: 1..18467115
location: region:1-18467115:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18467115:1
position: 18467115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18467115:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 297858..298057
location: region:297858-298057:1
BFO_0000051: feature:297858-298057:1:region
SIO_000974: 2ad649fe-4255-44cf-a5ae-d84bdbf05d08

position:297858:1
position: 297858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298057:1
position: 298057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:297858-298057:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1186744..1186943
location: region:1186744-1186943:1
BFO_0000051: feature:1186744-1186943:1:region
SIO_000974: 24a3ac9a-6fe2-4017-b376-4e9dd073d401

position:1186744:1
position: 1186744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186943:1
position: 1186943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1186744-1186943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1606116..1606315
location: region:1606116-1606315:1
BFO_0000051: feature:1606116-1606315:1:region
SIO_000974: a70c14a3-9351-4880-8aff-a36f901dcbf8

position:1606116:1
position: 1606116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1606315:1
position: 1606315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1606116-1606315:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2704380..2704579
location: region:2704380-2704579:1
BFO_0000051: feature:2704380-2704579:1:region
SIO_000974: 70f96fef-a5ab-48e8-ace2-b888f8d41320

position:2704380:1
position: 2704380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2704579:1
position: 2704579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2704380-2704579:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10020988..10021187
location: region:10020988-10021187:1
BFO_0000051: feature:10020988-10021187:1:region
SIO_000974: 030a0fb0-1766-465a-8b0d-db6b1c0f0c6b

position:10020988:1
position: 10020988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10021187:1
position: 10021187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10020988-10021187:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13520385..13520584
location: region:13520385-13520584:1
BFO_0000051: feature:13520385-13520584:1:region
SIO_000974: bcec9faa-c137-40e9-8276-8ebcc58e87c8

position:13520385:1
position: 13520385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13520584:1
position: 13520584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:13520385-13520584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17654392..17654591
location: region:17654392-17654591:1
BFO_0000051: feature:17654392-17654591:1:region
SIO_000974: 244db992-9881-4cee-b96b-66585fd4e455

position:17654392:1
position: 17654392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17654591:1
position: 17654591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17654392-17654591:1:region

Eudonia lacustrata genome assembly, chromosome: 23.
type: Entry
definition: Eudonia lacustrata genome assembly, chromosome: 23.
sequence version: OX387331.1
sequence date: 2022-12-12
sequence: sequence
division: INV
source: Eudonia lacustrata
organism: Eudonia lacustrata
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Eudonia.
reference: 1
comment: The assembly ilEudLacu3.1 is based on 36x PacBio data, 10X Genomics\nChromium data, and Arima2 Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 17326958
topology: linear
RO_0000086: SO_0000987
location: 1..17326958
location: region:1-17326958:1
RO_0002162: 1100991

1
journal: Submitted (10-DEC-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17326958:1
position: 17326958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17326958:1:source
BFO_0000050: sequence
organism: Eudonia lacustrata
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1100991
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3718709..3718908
location: region:3718709-3718908:1
BFO_0000051: feature:3718709-3718908:1:region
SIO_000974: fcfab5a4-e787-48ac-8fbe-2e6cb5bfae5f

position:3718709:1
position: 3718709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3718908:1
position: 3718908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3718709-3718908:1:region