Dicycla oo genome assembly, chromosome: 9.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 9.
sequence version: OX411718.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 33427856
topology: linear
RO_0000086: SO_0000987
location: 1..33427856
location: region:1-33427856:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33427856:1
position: 33427856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33427856:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 9
mol type: genomic DNA

1858094
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18442964..18443163
location: region:18442964-18443163:1
BFO_0000051: feature:18442964-18443163:1:region
SIO_000974: 324fd1b8-cf40-4c11-85e8-14191885456c

position:18442964:1
position: 18442964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18443163:1
position: 18443163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

324fd1b8-cf40-4c11-85e8-14191885456c
SIO_000300: 1
SIO_000628: feature:18442964-18443163:1:region

Dicycla oo genome assembly, chromosome: 10.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 10.
sequence version: OX411719.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 33409212
topology: linear
RO_0000086: SO_0000987
location: 1..33409212
location: region:1-33409212:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33409212:1
position: 33409212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33409212:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2304215..2304414
location: region:2304215-2304414:1
BFO_0000051: feature:2304215-2304414:1:region
SIO_000974: ed693f62-1117-4ebb-9639-feb55ccd5e76

position:2304215:1
position: 2304215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2304414:1
position: 2304414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ed693f62-1117-4ebb-9639-feb55ccd5e76
SIO_000300: 1
SIO_000628: feature:2304215-2304414:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5194699..5194898
location: region:5194699-5194898:1
BFO_0000051: feature:5194699-5194898:1:region
SIO_000974: db2aa204-0cca-4b32-b7eb-e481cfa3bd34

position:5194699:1
position: 5194699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5194898:1
position: 5194898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db2aa204-0cca-4b32-b7eb-e481cfa3bd34
SIO_000300: 1
SIO_000628: feature:5194699-5194898:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8488515..8488714
location: region:8488515-8488714:1
BFO_0000051: feature:8488515-8488714:1:region
SIO_000974: 8a88edf7-2e5a-41fe-84be-a042eca0ea4b

position:8488515:1
position: 8488515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8488714:1
position: 8488714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a88edf7-2e5a-41fe-84be-a042eca0ea4b
SIO_000300: 1
SIO_000628: feature:8488515-8488714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18435949..18436148
location: region:18435949-18436148:1
BFO_0000051: feature:18435949-18436148:1:region
SIO_000974: 8d38b8f6-349c-43f5-b861-75502c523cc1

position:18435949:1
position: 18435949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18436148:1
position: 18436148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d38b8f6-349c-43f5-b861-75502c523cc1
SIO_000300: 1
SIO_000628: feature:18435949-18436148:1:region

Dicycla oo genome assembly, chromosome: 11.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 11.
sequence version: OX411720.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32506488
topology: linear
RO_0000086: SO_0000987
location: 1..32506488
location: region:1-32506488:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32506488:1
position: 32506488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32506488:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1833790..1833989
location: region:1833790-1833989:1
BFO_0000051: feature:1833790-1833989:1:region
SIO_000974: 3235dcd8-db54-44b8-9f0d-791f4815c7fc

position:1833790:1
position: 1833790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1833989:1
position: 1833989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3235dcd8-db54-44b8-9f0d-791f4815c7fc
SIO_000300: 1
SIO_000628: feature:1833790-1833989:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15299463..15299662
location: region:15299463-15299662:1
BFO_0000051: feature:15299463-15299662:1:region
SIO_000974: ff52a38c-dc79-42ef-b1c5-8b91f0274a42

position:15299463:1
position: 15299463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15299662:1
position: 15299662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff52a38c-dc79-42ef-b1c5-8b91f0274a42
SIO_000300: 1
SIO_000628: feature:15299463-15299662:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23469542..23469741
location: region:23469542-23469741:1
BFO_0000051: feature:23469542-23469741:1:region
SIO_000974: 19235d42-b8c9-4a87-9f3a-33d35c10b588

position:23469542:1
position: 23469542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23469741:1
position: 23469741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19235d42-b8c9-4a87-9f3a-33d35c10b588
SIO_000300: 1
SIO_000628: feature:23469542-23469741:1:region

Dicycla oo genome assembly, chromosome: 12.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 12.
sequence version: OX411721.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32228478
topology: linear
RO_0000086: SO_0000987
location: 1..32228478
location: region:1-32228478:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32228478:1
position: 32228478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32228478:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6960456..6960655
location: region:6960456-6960655:1
BFO_0000051: feature:6960456-6960655:1:region
SIO_000974: a17e09f5-a902-4d62-8761-56af3dc1ccee

position:6960456:1
position: 6960456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6960655:1
position: 6960655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a17e09f5-a902-4d62-8761-56af3dc1ccee
SIO_000300: 1
SIO_000628: feature:6960456-6960655:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9462737..9462936
location: region:9462737-9462936:1
BFO_0000051: feature:9462737-9462936:1:region
SIO_000974: 9276e364-6c9e-482e-9708-56265aff7040

position:9462737:1
position: 9462737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9462936:1
position: 9462936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9462737-9462936:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17032957..17033156
location: region:17032957-17033156:1
BFO_0000051: feature:17032957-17033156:1:region
SIO_000974: fe5ebb8a-8fdb-4840-833b-5b421283d472

position:17032957:1
position: 17032957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17033156:1
position: 17033156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe5ebb8a-8fdb-4840-833b-5b421283d472
SIO_000300: 1
SIO_000628: feature:17032957-17033156:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29609573..29609772
location: region:29609573-29609772:1
BFO_0000051: feature:29609573-29609772:1:region
SIO_000974: c1c48778-3dfe-4db4-9f48-66c0554c5bc5

position:29609573:1
position: 29609573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29609772:1
position: 29609772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c1c48778-3dfe-4db4-9f48-66c0554c5bc5
SIO_000300: 1
SIO_000628: feature:29609573-29609772:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30275274..30275473
location: region:30275274-30275473:1
BFO_0000051: feature:30275274-30275473:1:region
SIO_000974: be9cece4-97f6-4f16-99c3-2d27e5b87089

position:30275274:1
position: 30275274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30275473:1
position: 30275473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be9cece4-97f6-4f16-99c3-2d27e5b87089
SIO_000300: 1
SIO_000628: feature:30275274-30275473:1:region

Dicycla oo genome assembly, chromosome: 13.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 13.
sequence version: OX411722.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32053505
topology: linear
RO_0000086: SO_0000987
location: 1..32053505
location: region:1-32053505:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32053505:1
position: 32053505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32053505:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 475526..475725
location: region:475526-475725:1
BFO_0000051: feature:475526-475725:1:region
SIO_000974: a9ac4ce6-5ece-41c3-a3fc-96c6504b9b32

position:475526:1
position: 475526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475725:1
position: 475725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9ac4ce6-5ece-41c3-a3fc-96c6504b9b32
SIO_000300: 1
SIO_000628: feature:475526-475725:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24256501..24256700
location: region:24256501-24256700:1
BFO_0000051: feature:24256501-24256700:1:region
SIO_000974: 15df286d-9451-462e-89ae-55bdd71d0756

position:24256501:1
position: 24256501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24256700:1
position: 24256700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

15df286d-9451-462e-89ae-55bdd71d0756
SIO_000300: 1
SIO_000628: feature:24256501-24256700:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25271812..25272011
location: region:25271812-25272011:1
BFO_0000051: feature:25271812-25272011:1:region
SIO_000974: 4dd12779-3d0b-4cd6-bfbe-b7da8417a98e

position:25271812:1
position: 25271812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25272011:1
position: 25272011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4dd12779-3d0b-4cd6-bfbe-b7da8417a98e
SIO_000300: 1
SIO_000628: feature:25271812-25272011:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25514315..25514514
location: region:25514315-25514514:1
BFO_0000051: feature:25514315-25514514:1:region
SIO_000974: e343ce4a-9456-4df6-bab4-6563887b48a5

position:25514315:1
position: 25514315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25514514:1
position: 25514514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e343ce4a-9456-4df6-bab4-6563887b48a5
SIO_000300: 1
SIO_000628: feature:25514315-25514514:1:region

Dicycla oo genome assembly, chromosome: 14.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 14.
sequence version: OX411723.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31874316
topology: linear
RO_0000086: SO_0000987
location: 1..31874316
location: region:1-31874316:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31874316:1
position: 31874316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31874316:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5437001..5437200
location: region:5437001-5437200:1
BFO_0000051: feature:5437001-5437200:1:region
SIO_000974: 21ecf059-ba59-480b-8920-1bdab15931af

position:5437001:1
position: 5437001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5437200:1
position: 5437200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21ecf059-ba59-480b-8920-1bdab15931af
SIO_000300: 1
SIO_000628: feature:5437001-5437200:1:region

Dicycla oo genome assembly, chromosome: 15.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 15.
sequence version: OX411724.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31378750
topology: linear
RO_0000086: SO_0000987
location: 1..31378750
location: region:1-31378750:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31378750:1
position: 31378750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31378750:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 411291..411490
location: region:411291-411490:1
BFO_0000051: feature:411291-411490:1:region
SIO_000974: 66924b3f-6939-4de3-a512-4f9a7afa285f

position:411291:1
position: 411291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411490:1
position: 411490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:411291-411490:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6509815..6510014
location: region:6509815-6510014:1
BFO_0000051: feature:6509815-6510014:1:region
SIO_000974: 61566cd7-7204-4c8e-bdb1-e581e58d5cf9

position:6509815:1
position: 6509815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6510014:1
position: 6510014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6509815-6510014:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9962550..9962749
location: region:9962550-9962749:1
BFO_0000051: feature:9962550-9962749:1:region
SIO_000974: 7b8e329f-dfa1-45bb-8ad6-60f2200624e7

position:9962550:1
position: 9962550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9962749:1
position: 9962749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9962550-9962749:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11407930..11408129
location: region:11407930-11408129:1
BFO_0000051: feature:11407930-11408129:1:region
SIO_000974: 6a5813fa-7c4e-400d-b49b-bd3118615ebd

position:11407930:1
position: 11407930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11408129:1
position: 11408129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11407930-11408129:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28042636..28042835
location: region:28042636-28042835:1
BFO_0000051: feature:28042636-28042835:1:region
SIO_000974: 4e218b33-42b2-489b-924c-acce2f322f6e

position:28042636:1
position: 28042636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28042835:1
position: 28042835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e218b33-42b2-489b-924c-acce2f322f6e
SIO_000300: 1
SIO_000628: feature:28042636-28042835:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30700734..30700933
location: region:30700734-30700933:1
BFO_0000051: feature:30700734-30700933:1:region
SIO_000974: 738bb7df-ccb4-4556-ad4f-e1ff410bfcee

position:30700734:1
position: 30700734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30700933:1
position: 30700933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

738bb7df-ccb4-4556-ad4f-e1ff410bfcee
SIO_000300: 1
SIO_000628: feature:30700734-30700933:1:region

Dicycla oo genome assembly, chromosome: 16.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 16.
sequence version: OX411725.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31020465
topology: linear
RO_0000086: SO_0000987
location: 1..31020465
location: region:1-31020465:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31020465:1
position: 31020465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31020465:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15285202..15285401
location: region:15285202-15285401:1
BFO_0000051: feature:15285202-15285401:1:region
SIO_000974: 270524c6-892f-404d-bb27-44aa7dea3149

position:15285202:1
position: 15285202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15285401:1
position: 15285401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

270524c6-892f-404d-bb27-44aa7dea3149
SIO_000300: 1
SIO_000628: feature:15285202-15285401:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25852266..25852465
location: region:25852266-25852465:1
BFO_0000051: feature:25852266-25852465:1:region
SIO_000974: 5e24f396-d55a-4453-80d5-293e3ecd5e9a

position:25852266:1
position: 25852266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25852465:1
position: 25852465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e24f396-d55a-4453-80d5-293e3ecd5e9a
SIO_000300: 1
SIO_000628: feature:25852266-25852465:1:region

Dicycla oo genome assembly, chromosome: 17.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 17.
sequence version: OX411726.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 30819712
topology: linear
RO_0000086: SO_0000987
location: 1..30819712
location: region:1-30819712:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30819712:1
position: 30819712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30819712:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 124767..124966
location: region:124767-124966:1
BFO_0000051: feature:124767-124966:1:region
SIO_000974: f7f3a86c-2e06-4614-b049-dee93a176612

position:124767:1
position: 124767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124966:1
position: 124966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:124767-124966:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12087341..12087540
location: region:12087341-12087540:1
BFO_0000051: feature:12087341-12087540:1:region
SIO_000974: 0e6ca76a-0a0c-46ff-8a12-d80fd88d78d4

position:12087341:1
position: 12087341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12087540:1
position: 12087540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e6ca76a-0a0c-46ff-8a12-d80fd88d78d4
SIO_000300: 1
SIO_000628: feature:12087341-12087540:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30653964..30654163
location: region:30653964-30654163:1
BFO_0000051: feature:30653964-30654163:1:region
SIO_000974: ac44f900-54ab-4d24-9905-e046af8f13e3

position:30653964:1
position: 30653964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30654163:1
position: 30654163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac44f900-54ab-4d24-9905-e046af8f13e3
SIO_000300: 1
SIO_000628: feature:30653964-30654163:1:region

Dicycla oo genome assembly, chromosome: 18.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 18.
sequence version: OX411727.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 30641613
topology: linear
RO_0000086: SO_0000987
location: 1..30641613
location: region:1-30641613:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30641613:1
position: 30641613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30641613:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 821371..821570
location: region:821371-821570:1
BFO_0000051: feature:821371-821570:1:region
SIO_000974: 3e30fae1-7271-4e26-a958-cdc0cf5da9ee

position:821371:1
position: 821371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:821570:1
position: 821570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:821371-821570:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 911271..911470
location: region:911271-911470:1
BFO_0000051: feature:911271-911470:1:region
SIO_000974: dbb80111-6f26-4d93-aa4d-d2fae620fc84

position:911271:1
position: 911271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:911470:1
position: 911470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:911271-911470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10850214..10850413
location: region:10850214-10850413:1
BFO_0000051: feature:10850214-10850413:1:region
SIO_000974: e4da954a-e8c1-47e3-b631-511daad794bf

position:10850214:1
position: 10850214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10850413:1
position: 10850413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4da954a-e8c1-47e3-b631-511daad794bf
SIO_000300: 1
SIO_000628: feature:10850214-10850413:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15277414..15277613
location: region:15277414-15277613:1
BFO_0000051: feature:15277414-15277613:1:region
SIO_000974: 94ae5d72-7bc4-4eb8-9901-2a9a9ef8f179

position:15277414:1
position: 15277414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15277613:1
position: 15277613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94ae5d72-7bc4-4eb8-9901-2a9a9ef8f179
SIO_000300: 1
SIO_000628: feature:15277414-15277613:1:region

Dicycla oo genome assembly, chromosome: 19.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 19.
sequence version: OX411728.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29950055
topology: linear
RO_0000086: SO_0000987
location: 1..29950055
location: region:1-29950055:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29950055:1
position: 29950055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29950055:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1593894..1594093
location: region:1593894-1594093:1
BFO_0000051: feature:1593894-1594093:1:region
SIO_000974: f7e7bfbf-e540-47ed-93fd-9bc80cf4b44f

position:1593894:1
position: 1593894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1594093:1
position: 1594093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f7e7bfbf-e540-47ed-93fd-9bc80cf4b44f
SIO_000300: 1
SIO_000628: feature:1593894-1594093:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6120586..6120785
location: region:6120586-6120785:1
BFO_0000051: feature:6120586-6120785:1:region
SIO_000974: 65c2e0d5-d4ce-431f-9ada-8a614f98a1db

position:6120586:1
position: 6120586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6120785:1
position: 6120785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65c2e0d5-d4ce-431f-9ada-8a614f98a1db
SIO_000300: 1
SIO_000628: feature:6120586-6120785:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6372829..6373028
location: region:6372829-6373028:1
BFO_0000051: feature:6372829-6373028:1:region
SIO_000974: 5e64b838-6dc7-4135-a242-090d1d4801fa

position:6372829:1
position: 6372829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6373028:1
position: 6373028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e64b838-6dc7-4135-a242-090d1d4801fa
SIO_000300: 1
SIO_000628: feature:6372829-6373028:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6502778..6502977
location: region:6502778-6502977:1
BFO_0000051: feature:6502778-6502977:1:region
SIO_000974: e9e05382-5931-450c-bad1-d9cb216f87b2

position:6502778:1
position: 6502778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6502977:1
position: 6502977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9e05382-5931-450c-bad1-d9cb216f87b2
SIO_000300: 1
SIO_000628: feature:6502778-6502977:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23272230..23272429
location: region:23272230-23272429:1
BFO_0000051: feature:23272230-23272429:1:region
SIO_000974: 4355af30-ec22-43d5-ae37-326220d68bca

position:23272230:1
position: 23272230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23272429:1
position: 23272429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4355af30-ec22-43d5-ae37-326220d68bca
SIO_000300: 1
SIO_000628: feature:23272230-23272429:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25333466..25333665
location: region:25333466-25333665:1
BFO_0000051: feature:25333466-25333665:1:region
SIO_000974: a6e16bbd-25db-4c74-afd3-4f03b03bc341

position:25333466:1
position: 25333466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25333665:1
position: 25333665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a6e16bbd-25db-4c74-afd3-4f03b03bc341
SIO_000300: 1
SIO_000628: feature:25333466-25333665:1:region

Dicycla oo genome assembly, chromosome: 20.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 20.
sequence version: OX411729.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29208192
topology: linear
RO_0000086: SO_0000987
location: 1..29208192
location: region:1-29208192:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29208192:1
position: 29208192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29208192:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 771429..771628
location: region:771429-771628:1
BFO_0000051: feature:771429-771628:1:region
SIO_000974: 27780850-4b1a-4223-bb86-9254267709ea

position:771429:1
position: 771429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:771628:1
position: 771628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27780850-4b1a-4223-bb86-9254267709ea
SIO_000300: 1
SIO_000628: feature:771429-771628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2937288..2937487
location: region:2937288-2937487:1
BFO_0000051: feature:2937288-2937487:1:region
SIO_000974: 0bf141b1-5269-4d0b-97a8-1def68b86d0e

position:2937288:1
position: 2937288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2937487:1
position: 2937487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0bf141b1-5269-4d0b-97a8-1def68b86d0e
SIO_000300: 1
SIO_000628: feature:2937288-2937487:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8495758..8495957
location: region:8495758-8495957:1
BFO_0000051: feature:8495758-8495957:1:region
SIO_000974: 47256188-0810-48f8-aab8-d8d7050d8618

position:8495758:1
position: 8495758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8495957:1
position: 8495957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

47256188-0810-48f8-aab8-d8d7050d8618
SIO_000300: 1
SIO_000628: feature:8495758-8495957:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11620549..11620748
location: region:11620549-11620748:1
BFO_0000051: feature:11620549-11620748:1:region
SIO_000974: 4457a2e0-f503-4e46-ad4c-d5b34876b497

position:11620549:1
position: 11620549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11620748:1
position: 11620748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4457a2e0-f503-4e46-ad4c-d5b34876b497
SIO_000300: 1
SIO_000628: feature:11620549-11620748:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22278904..22279103
location: region:22278904-22279103:1
BFO_0000051: feature:22278904-22279103:1:region
SIO_000974: fee1152f-ba4f-4eb0-98b7-e9f1725051a8

position:22278904:1
position: 22278904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22279103:1
position: 22279103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fee1152f-ba4f-4eb0-98b7-e9f1725051a8
SIO_000300: 1
SIO_000628: feature:22278904-22279103:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28286780..28286979
location: region:28286780-28286979:1
BFO_0000051: feature:28286780-28286979:1:region
SIO_000974: 765a5f22-2daa-4cc7-8b98-0d291f892df3

position:28286780:1
position: 28286780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28286979:1
position: 28286979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

765a5f22-2daa-4cc7-8b98-0d291f892df3
SIO_000300: 1
SIO_000628: feature:28286780-28286979:1:region

Dicycla oo genome assembly, chromosome: 21.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 21.
sequence version: OX411730.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 27887995
topology: linear
RO_0000086: SO_0000987
location: 1..27887995
location: region:1-27887995:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27887995:1
position: 27887995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27887995:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6499732..6499931
location: region:6499732-6499931:1
BFO_0000051: feature:6499732-6499931:1:region
SIO_000974: 045a4d80-319d-48e9-93a5-1897f9acba27

position:6499732:1
position: 6499732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6499931:1
position: 6499931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

045a4d80-319d-48e9-93a5-1897f9acba27
SIO_000300: 1
SIO_000628: feature:6499732-6499931:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13491782..13491981
location: region:13491782-13491981:1
BFO_0000051: feature:13491782-13491981:1:region
SIO_000974: ee7919b3-3fdb-485d-911b-373e15896899

position:13491782:1
position: 13491782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13491981:1
position: 13491981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee7919b3-3fdb-485d-911b-373e15896899
SIO_000300: 1
SIO_000628: feature:13491782-13491981:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14169019..14169218
location: region:14169019-14169218:1
BFO_0000051: feature:14169019-14169218:1:region
SIO_000974: a71ccc75-3c1c-4cf6-bcc5-4218f747e9e2

position:14169019:1
position: 14169019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14169218:1
position: 14169218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a71ccc75-3c1c-4cf6-bcc5-4218f747e9e2
SIO_000300: 1
SIO_000628: feature:14169019-14169218:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26727560..26727759
location: region:26727560-26727759:1
BFO_0000051: feature:26727560-26727759:1:region
SIO_000974: 5d000023-5ff8-43d2-88de-6203fc4c81ac

position:26727560:1
position: 26727560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26727759:1
position: 26727759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5d000023-5ff8-43d2-88de-6203fc4c81ac
SIO_000300: 1
SIO_000628: feature:26727560-26727759:1:region

Dicycla oo genome assembly, chromosome: 22.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 22.
sequence version: OX411731.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 26433219
topology: linear
RO_0000086: SO_0000987
location: 1..26433219
location: region:1-26433219:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26433219:1
position: 26433219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26433219:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20883855..20884054
location: region:20883855-20884054:1
BFO_0000051: feature:20883855-20884054:1:region
SIO_000974: 6e26f0d5-f037-4bb4-97b3-29c5c88d2fae

position:20883855:1
position: 20883855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20884054:1
position: 20884054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6e26f0d5-f037-4bb4-97b3-29c5c88d2fae
SIO_000300: 1
SIO_000628: feature:20883855-20884054:1:region

Dicycla oo genome assembly, chromosome: 23.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 23.
sequence version: OX411732.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 25760463
topology: linear
RO_0000086: SO_0000987
location: 1..25760463
location: region:1-25760463:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25760463:1
position: 25760463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25760463:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6080451..6080650
location: region:6080451-6080650:1
BFO_0000051: feature:6080451-6080650:1:region
SIO_000974: c614152f-0254-4ba5-a5b7-ae312edd08ed

position:6080451:1
position: 6080451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6080650:1
position: 6080650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c614152f-0254-4ba5-a5b7-ae312edd08ed
SIO_000300: 1
SIO_000628: feature:6080451-6080650:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11803301..11803500
location: region:11803301-11803500:1
BFO_0000051: feature:11803301-11803500:1:region
SIO_000974: 8c2ad4c8-5f19-4b3a-8429-f0ec8e51b49f

position:11803301:1
position: 11803301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11803500:1
position: 11803500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c2ad4c8-5f19-4b3a-8429-f0ec8e51b49f
SIO_000300: 1
SIO_000628: feature:11803301-11803500:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24387264..24387463
location: region:24387264-24387463:1
BFO_0000051: feature:24387264-24387463:1:region
SIO_000974: 2c937a9a-b1d0-4326-add0-24b83e6a34b4

position:24387264:1
position: 24387264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24387463:1
position: 24387463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c937a9a-b1d0-4326-add0-24b83e6a34b4
SIO_000300: 1
SIO_000628: feature:24387264-24387463:1:region

Dicycla oo genome assembly, chromosome: 24.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 24.
sequence version: OX411733.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 24588037
topology: linear
RO_0000086: SO_0000987
location: 1..24588037
location: region:1-24588037:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24588037:1
position: 24588037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24588037:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2530048..2530247
location: region:2530048-2530247:1
BFO_0000051: feature:2530048-2530247:1:region
SIO_000974: 7ec05fc1-9b3a-44ed-b065-efd7a4219488

position:2530048:1
position: 2530048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2530247:1
position: 2530247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ec05fc1-9b3a-44ed-b065-efd7a4219488
SIO_000300: 1
SIO_000628: feature:2530048-2530247:1:region

Dicycla oo genome assembly, chromosome: 25.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 25.
sequence version: OX411734.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21817049
topology: linear
RO_0000086: SO_0000987
location: 1..21817049
location: region:1-21817049:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21817049:1
position: 21817049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21817049:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8236953..8237152
location: region:8236953-8237152:1
BFO_0000051: feature:8236953-8237152:1:region
SIO_000974: cec0bde7-c858-4781-80ac-5b6c4d7d330e

position:8236953:1
position: 8236953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8237152:1
position: 8237152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cec0bde7-c858-4781-80ac-5b6c4d7d330e
SIO_000300: 1
SIO_000628: feature:8236953-8237152:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8941596..8941795
location: region:8941596-8941795:1
BFO_0000051: feature:8941596-8941795:1:region
SIO_000974: 0163f255-61d4-47bd-8b4b-ce530ecc0cca

position:8941596:1
position: 8941596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8941795:1
position: 8941795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0163f255-61d4-47bd-8b4b-ce530ecc0cca
SIO_000300: 1
SIO_000628: feature:8941596-8941795:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11381110..11381309
location: region:11381110-11381309:1
BFO_0000051: feature:11381110-11381309:1:region
SIO_000974: fdf053ff-f5d5-40b8-8a7b-6654fbf499db

position:11381110:1
position: 11381110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11381309:1
position: 11381309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fdf053ff-f5d5-40b8-8a7b-6654fbf499db
SIO_000300: 1
SIO_000628: feature:11381110-11381309:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12751787..12751986
location: region:12751787-12751986:1
BFO_0000051: feature:12751787-12751986:1:region
SIO_000974: 6757d31c-7c45-4d62-b710-ddc51701b624

position:12751787:1
position: 12751787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12751986:1
position: 12751986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6757d31c-7c45-4d62-b710-ddc51701b624
SIO_000300: 1
SIO_000628: feature:12751787-12751986:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13919131..13919330
location: region:13919131-13919330:1
BFO_0000051: feature:13919131-13919330:1:region
SIO_000974: c627e6da-29a6-4f47-a66d-c6a1075085b6

position:13919131:1
position: 13919131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13919330:1
position: 13919330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c627e6da-29a6-4f47-a66d-c6a1075085b6
SIO_000300: 1
SIO_000628: feature:13919131-13919330:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14112048..14112247
location: region:14112048-14112247:1
BFO_0000051: feature:14112048-14112247:1:region
SIO_000974: 745a1074-c9e3-4996-8c45-b83c7e13f931

position:14112048:1
position: 14112048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14112247:1
position: 14112247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

745a1074-c9e3-4996-8c45-b83c7e13f931
SIO_000300: 1
SIO_000628: feature:14112048-14112247:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16022866..16023065
location: region:16022866-16023065:1
BFO_0000051: feature:16022866-16023065:1:region
SIO_000974: 06b0f21a-9d5a-463a-a726-f470371f68b3

position:16022866:1
position: 16022866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16023065:1
position: 16023065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06b0f21a-9d5a-463a-a726-f470371f68b3
SIO_000300: 1
SIO_000628: feature:16022866-16023065:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21026188..21026387
location: region:21026188-21026387:1
BFO_0000051: feature:21026188-21026387:1:region
SIO_000974: 4e04171f-d309-4c66-9e0d-5de45a186390

position:21026188:1
position: 21026188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21026387:1
position: 21026387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e04171f-d309-4c66-9e0d-5de45a186390
SIO_000300: 1
SIO_000628: feature:21026188-21026387:1:region

Dicycla oo genome assembly, chromosome: 26.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 26.
sequence version: OX411735.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 21809368
topology: linear
RO_0000086: SO_0000987
location: 1..21809368
location: region:1-21809368:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21809368:1
position: 21809368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21809368:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4865771..4865970
location: region:4865771-4865970:1
BFO_0000051: feature:4865771-4865970:1:region
SIO_000974: aac2eeb2-19c1-4f5d-b9f1-a0197b2276ed

position:4865771:1
position: 4865771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4865970:1
position: 4865970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aac2eeb2-19c1-4f5d-b9f1-a0197b2276ed
SIO_000300: 1
SIO_000628: feature:4865771-4865970:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5080969..5081168
location: region:5080969-5081168:1
BFO_0000051: feature:5080969-5081168:1:region
SIO_000974: f6b7d940-584a-4f27-baf4-e0dd03ad8847

position:5080969:1
position: 5080969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5081168:1
position: 5081168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6b7d940-584a-4f27-baf4-e0dd03ad8847
SIO_000300: 1
SIO_000628: feature:5080969-5081168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5518169..5518368
location: region:5518169-5518368:1
BFO_0000051: feature:5518169-5518368:1:region
SIO_000974: 1c364302-4249-4d1f-aba5-3888cda69694

position:5518169:1
position: 5518169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5518368:1
position: 5518368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1c364302-4249-4d1f-aba5-3888cda69694
SIO_000300: 1
SIO_000628: feature:5518169-5518368:1:region

Dicycla oo genome assembly, chromosome: 27.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 27.
sequence version: OX411736.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20763782
topology: linear
RO_0000086: SO_0000987
location: 1..20763782
location: region:1-20763782:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20763782:1
position: 20763782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20763782:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19876477..19876676
location: region:19876477-19876676:1
BFO_0000051: feature:19876477-19876676:1:region
SIO_000974: bcd410a4-4ff4-443d-9ef9-5e89b3d3cec0

position:19876477:1
position: 19876477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19876676:1
position: 19876676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bcd410a4-4ff4-443d-9ef9-5e89b3d3cec0
SIO_000300: 1
SIO_000628: feature:19876477-19876676:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19950676..19950875
location: region:19950676-19950875:1
BFO_0000051: feature:19950676-19950875:1:region
SIO_000974: 2c3aba7e-2f01-418c-9346-063a5f6bb69e

position:19950676:1
position: 19950676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19950875:1
position: 19950875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c3aba7e-2f01-418c-9346-063a5f6bb69e
SIO_000300: 1
SIO_000628: feature:19950676-19950875:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20055502..20055701
location: region:20055502-20055701:1
BFO_0000051: feature:20055502-20055701:1:region
SIO_000974: 66ea8d6f-1fc1-4783-812f-8925463b8d2f

position:20055502:1
position: 20055502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20055701:1
position: 20055701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

66ea8d6f-1fc1-4783-812f-8925463b8d2f
SIO_000300: 1
SIO_000628: feature:20055502-20055701:1:region

Dicycla oo genome assembly, chromosome: 28.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 28.
sequence version: OX411737.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 20619723
topology: linear
RO_0000086: SO_0000987
location: 1..20619723
location: region:1-20619723:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20619723:1
position: 20619723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20619723:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 235646..235845
location: region:235646-235845:1
BFO_0000051: feature:235646-235845:1:region
SIO_000974: a850be93-a3cc-4d94-b5c8-29980eacd570

position:235646:1
position: 235646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235845:1
position: 235845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a850be93-a3cc-4d94-b5c8-29980eacd570
SIO_000300: 1
SIO_000628: feature:235646-235845:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 318051..318250
location: region:318051-318250:1
BFO_0000051: feature:318051-318250:1:region
SIO_000974: 2c956381-fd2f-4816-ace0-7b6c94b8eaf9

position:318051:1
position: 318051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318250:1
position: 318250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c956381-fd2f-4816-ace0-7b6c94b8eaf9
SIO_000300: 1
SIO_000628: feature:318051-318250:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2202923..2203122
location: region:2202923-2203122:1
BFO_0000051: feature:2202923-2203122:1:region
SIO_000974: 0adad0d4-b03f-467b-9d4f-594e267b3957

position:2202923:1
position: 2202923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2203122:1
position: 2203122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0adad0d4-b03f-467b-9d4f-594e267b3957
SIO_000300: 1
SIO_000628: feature:2202923-2203122:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5404615..5404814
location: region:5404615-5404814:1
BFO_0000051: feature:5404615-5404814:1:region
SIO_000974: 4ab370e6-20df-4c36-8e84-1678d8432514

position:5404615:1
position: 5404615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5404814:1
position: 5404814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4ab370e6-20df-4c36-8e84-1678d8432514
SIO_000300: 1
SIO_000628: feature:5404615-5404814:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6726815..6727014
location: region:6726815-6727014:1
BFO_0000051: feature:6726815-6727014:1:region
SIO_000974: 3087934e-3f23-4764-9bb2-07f9af5b96cb

position:6726815:1
position: 6726815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6727014:1
position: 6727014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3087934e-3f23-4764-9bb2-07f9af5b96cb
SIO_000300: 1
SIO_000628: feature:6726815-6727014:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11530282..11530481
location: region:11530282-11530481:1
BFO_0000051: feature:11530282-11530481:1:region
SIO_000974: 71ffc812-3804-4a40-ab2e-aa2504aadff2

position:11530282:1
position: 11530282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11530481:1
position: 11530481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

71ffc812-3804-4a40-ab2e-aa2504aadff2
SIO_000300: 1
SIO_000628: feature:11530282-11530481:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18819524..18819723
location: region:18819524-18819723:1
BFO_0000051: feature:18819524-18819723:1:region
SIO_000974: 858c0658-1acd-4505-a826-737b0edc305c

position:18819524:1
position: 18819524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18819723:1
position: 18819723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

858c0658-1acd-4505-a826-737b0edc305c
SIO_000300: 1
SIO_000628: feature:18819524-18819723:1:region

Dicycla oo genome assembly, chromosome: 29.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 29.
sequence version: OX411738.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 19591810
topology: linear
RO_0000086: SO_0000987
location: 1..19591810
location: region:1-19591810:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19591810:1
position: 19591810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19591810:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9022669..9022868
location: region:9022669-9022868:1
BFO_0000051: feature:9022669-9022868:1:region
SIO_000974: 6871f5ae-5216-443f-86e9-623696db896b

position:9022669:1
position: 9022669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9022868:1
position: 9022868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6871f5ae-5216-443f-86e9-623696db896b
SIO_000300: 1
SIO_000628: feature:9022669-9022868:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12278175..12278374
location: region:12278175-12278374:1
BFO_0000051: feature:12278175-12278374:1:region
SIO_000974: 1fcd2804-8119-4f13-936c-d8b95e2c6470

position:12278175:1
position: 12278175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12278374:1
position: 12278374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1fcd2804-8119-4f13-936c-d8b95e2c6470
SIO_000300: 1
SIO_000628: feature:12278175-12278374:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13573297..13573496
location: region:13573297-13573496:1
BFO_0000051: feature:13573297-13573496:1:region
SIO_000974: c8c6e3bb-ad20-4bd6-8525-295d5e0ab731

position:13573297:1
position: 13573297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13573496:1
position: 13573496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8c6e3bb-ad20-4bd6-8525-295d5e0ab731
SIO_000300: 1
SIO_000628: feature:13573297-13573496:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15249497..15249696
location: region:15249497-15249696:1
BFO_0000051: feature:15249497-15249696:1:region
SIO_000974: fd6cb83a-46c4-47c6-8429-4cfc3bbf9616

position:15249497:1
position: 15249497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15249696:1
position: 15249696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd6cb83a-46c4-47c6-8429-4cfc3bbf9616
SIO_000300: 1
SIO_000628: feature:15249497-15249696:1:region

Dicycla oo genome assembly, chromosome: 30.
type: Entry
definition: Dicycla oo genome assembly, chromosome: 30.
sequence version: OX411739.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18807337
topology: linear
RO_0000086: SO_0000987
location: 1..18807337
location: region:1-18807337:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18807337:1
position: 18807337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18807337:1:source
BFO_0000050: sequence
organism: Dicycla oo
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9592502..9592701
location: region:9592502-9592701:1
BFO_0000051: feature:9592502-9592701:1:region
SIO_000974: 4177df30-936b-453d-ad50-5ebe25578563

position:9592502:1
position: 9592502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9592701:1
position: 9592701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4177df30-936b-453d-ad50-5ebe25578563
SIO_000300: 1
SIO_000628: feature:9592502-9592701:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 1858094
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16055533..16055732
location: region:16055533-16055732:1
BFO_0000051: feature:16055533-16055732:1:region
SIO_000974: eb24436a-d76f-4637-a248-74e842b1fb25

position:16055533:1
position: 16055533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16055732:1
position: 16055732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb24436a-d76f-4637-a248-74e842b1fb25
SIO_000300: 1
SIO_000628: feature:16055533-16055732:1:region

Dicycla oo genome assembly, organelle: mitochondrion.
type: Entry
definition: Dicycla oo genome assembly, organelle: mitochondrion.
sequence version: OX411740.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: mitochondrion Dicycla oo
organism: Dicycla oo
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dicycla.
reference: 1
comment: The assembly ilDicOoxx2.1 is based on 27x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15291
topology: linear
RO_0000086: SO_0000987
location: 1..15291
location: region:1-15291:1
RO_0002162: 1858094

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15291:1
position: 15291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15291:1:source
BFO_0000050: sequence
organism: Dicycla oo
organelle: mitochondrion
mol type: genomic DNA

Orthosia incerta genome assembly, chromosome: Z.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: Z.
sequence version: OX411741.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 69513284
topology: linear
RO_0000086: SO_0000987
location: 1..69513284
location: region:1-69513284:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69513284:1
position: 69513284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-69513284:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: Z
mol type: genomic DNA

988011
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 969785..969984
location: region:969785-969984:1
BFO_0000051: feature:969785-969984:1:region
SIO_000974: 4f4a7d8c-8919-4f91-9d00-1e9aec01e4a4

position:969785:1
position: 969785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:969984:1
position: 969984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4f4a7d8c-8919-4f91-9d00-1e9aec01e4a4
SIO_000300: 1
SIO_000628: feature:969785-969984:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20833283..20833482
location: region:20833283-20833482:1
BFO_0000051: feature:20833283-20833482:1:region
SIO_000974: e984565c-8878-4de7-a910-8d2f71adbf3d

position:20833283:1
position: 20833283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20833482:1
position: 20833482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e984565c-8878-4de7-a910-8d2f71adbf3d
SIO_000300: 1
SIO_000628: feature:20833283-20833482:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33364338..33364537
location: region:33364338-33364537:1
BFO_0000051: feature:33364338-33364537:1:region
SIO_000974: b65ba016-5be3-45ae-a90b-1fd71d01af42

position:33364338:1
position: 33364338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33364537:1
position: 33364537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b65ba016-5be3-45ae-a90b-1fd71d01af42
SIO_000300: 1
SIO_000628: feature:33364338-33364537:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39272923..39273122
location: region:39272923-39273122:1
BFO_0000051: feature:39272923-39273122:1:region
SIO_000974: a893e6b6-8d3f-4ba1-be27-31e4455f2b4f

position:39272923:1
position: 39272923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39273122:1
position: 39273122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a893e6b6-8d3f-4ba1-be27-31e4455f2b4f
SIO_000300: 1
SIO_000628: feature:39272923-39273122:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 41511224..41511423
location: region:41511224-41511423:1
BFO_0000051: feature:41511224-41511423:1:region
SIO_000974: 5f9ae7c5-7e65-43a7-b937-a37916b2ff1b

position:41511224:1
position: 41511224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41511423:1
position: 41511423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f9ae7c5-7e65-43a7-b937-a37916b2ff1b
SIO_000300: 1
SIO_000628: feature:41511224-41511423:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42870134..42870333
location: region:42870134-42870333:1
BFO_0000051: feature:42870134-42870333:1:region
SIO_000974: 6fbc2745-e3fe-429f-b819-18673012a31f

position:42870134:1
position: 42870134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42870333:1
position: 42870333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fbc2745-e3fe-429f-b819-18673012a31f
SIO_000300: 1
SIO_000628: feature:42870134-42870333:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43579334..43579533
location: region:43579334-43579533:1
BFO_0000051: feature:43579334-43579533:1:region
SIO_000974: 88753618-73ad-46da-ab99-c42c77ed35f8

position:43579334:1
position: 43579334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43579533:1
position: 43579533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88753618-73ad-46da-ab99-c42c77ed35f8
SIO_000300: 1
SIO_000628: feature:43579334-43579533:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45167774..45167973
location: region:45167774-45167973:1
BFO_0000051: feature:45167774-45167973:1:region
SIO_000974: cf6e65f3-117d-4f13-836b-a5ba51ae3778

position:45167774:1
position: 45167774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45167973:1
position: 45167973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf6e65f3-117d-4f13-836b-a5ba51ae3778
SIO_000300: 1
SIO_000628: feature:45167774-45167973:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57623770..57623969
location: region:57623770-57623969:1
BFO_0000051: feature:57623770-57623969:1:region
SIO_000974: dbfe938e-b380-4c86-9fda-6fa7d30b2566

position:57623770:1
position: 57623770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57623969:1
position: 57623969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dbfe938e-b380-4c86-9fda-6fa7d30b2566
SIO_000300: 1
SIO_000628: feature:57623770-57623969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 68477175..68477374
location: region:68477175-68477374:1
BFO_0000051: feature:68477175-68477374:1:region
SIO_000974: 6e5d01d3-95c2-4a9b-8a52-1ac590cc9c8d

position:68477175:1
position: 68477175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68477374:1
position: 68477374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6e5d01d3-95c2-4a9b-8a52-1ac590cc9c8d
SIO_000300: 1
SIO_000628: feature:68477175-68477374:1:region

Orthosia incerta genome assembly, chromosome: 1.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 1.
sequence version: OX411742.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 66211894
topology: linear
RO_0000086: SO_0000987
location: 1..66211894
location: region:1-66211894:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66211894:1
position: 66211894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-66211894:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1344403..1344602
location: region:1344403-1344602:1
BFO_0000051: feature:1344403-1344602:1:region
SIO_000974: b7356fa8-9fc9-4e2a-95e6-40afb69ee160

position:1344403:1
position: 1344403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1344602:1
position: 1344602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7356fa8-9fc9-4e2a-95e6-40afb69ee160
SIO_000300: 1
SIO_000628: feature:1344403-1344602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2738424..2738623
location: region:2738424-2738623:1
BFO_0000051: feature:2738424-2738623:1:region
SIO_000974: 646ed443-697b-495d-9cc4-b8bb0ec33216

position:2738424:1
position: 2738424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2738623:1
position: 2738623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

646ed443-697b-495d-9cc4-b8bb0ec33216
SIO_000300: 1
SIO_000628: feature:2738424-2738623:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4184111..4184310
location: region:4184111-4184310:1
BFO_0000051: feature:4184111-4184310:1:region
SIO_000974: 50c135b7-5e59-4cb4-9a9a-248eb27965b5

position:4184111:1
position: 4184111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4184310:1
position: 4184310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50c135b7-5e59-4cb4-9a9a-248eb27965b5
SIO_000300: 1
SIO_000628: feature:4184111-4184310:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4606862..4607061
location: region:4606862-4607061:1
BFO_0000051: feature:4606862-4607061:1:region
SIO_000974: 251b302c-c739-4d86-bdef-719212066ed9

position:4606862:1
position: 4606862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4607061:1
position: 4607061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

251b302c-c739-4d86-bdef-719212066ed9
SIO_000300: 1
SIO_000628: feature:4606862-4607061:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17000062..17000261
location: region:17000062-17000261:1
BFO_0000051: feature:17000062-17000261:1:region
SIO_000974: d47c1a13-984d-4eb7-9cea-d00e64cbbb75

position:17000062:1
position: 17000062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17000261:1
position: 17000261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d47c1a13-984d-4eb7-9cea-d00e64cbbb75
SIO_000300: 1
SIO_000628: feature:17000062-17000261:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19930596..19930795
location: region:19930596-19930795:1
BFO_0000051: feature:19930596-19930795:1:region
SIO_000974: 26d4b19d-009e-441a-9a43-49f47f1b7ec0

position:19930596:1
position: 19930596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19930795:1
position: 19930795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

26d4b19d-009e-441a-9a43-49f47f1b7ec0
SIO_000300: 1
SIO_000628: feature:19930596-19930795:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19978483..19978682
location: region:19978483-19978682:1
BFO_0000051: feature:19978483-19978682:1:region
SIO_000974: e7b87e39-dfb8-46fe-917e-0a81d87c0f17

position:19978483:1
position: 19978483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19978682:1
position: 19978682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e7b87e39-dfb8-46fe-917e-0a81d87c0f17
SIO_000300: 1
SIO_000628: feature:19978483-19978682:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20049278..20049477
location: region:20049278-20049477:1
BFO_0000051: feature:20049278-20049477:1:region
SIO_000974: ae14ba57-c4b3-4b66-9819-1ea6c51ac4f9

position:20049278:1
position: 20049278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20049477:1
position: 20049477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae14ba57-c4b3-4b66-9819-1ea6c51ac4f9
SIO_000300: 1
SIO_000628: feature:20049278-20049477:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22784855..22785054
location: region:22784855-22785054:1
BFO_0000051: feature:22784855-22785054:1:region
SIO_000974: 89e24925-bb5b-44cd-8ed5-ea5fee0dde1e

position:22784855:1
position: 22784855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22785054:1
position: 22785054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

89e24925-bb5b-44cd-8ed5-ea5fee0dde1e
SIO_000300: 1
SIO_000628: feature:22784855-22785054:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23233050..23233249
location: region:23233050-23233249:1
BFO_0000051: feature:23233050-23233249:1:region
SIO_000974: 56ba4011-b507-4b56-b5d5-68067237f2cf

position:23233050:1
position: 23233050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23233249:1
position: 23233249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56ba4011-b507-4b56-b5d5-68067237f2cf
SIO_000300: 1
SIO_000628: feature:23233050-23233249:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29185311..29185510
location: region:29185311-29185510:1
BFO_0000051: feature:29185311-29185510:1:region
SIO_000974: 80cb708e-69aa-482b-b64c-e3f4d63c6f87

position:29185311:1
position: 29185311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29185510:1
position: 29185510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80cb708e-69aa-482b-b64c-e3f4d63c6f87
SIO_000300: 1
SIO_000628: feature:29185311-29185510:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30144511..30144710
location: region:30144511-30144710:1
BFO_0000051: feature:30144511-30144710:1:region
SIO_000974: 5f52f814-f0e8-4a86-b56d-0379960ce764

position:30144511:1
position: 30144511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30144710:1
position: 30144710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f52f814-f0e8-4a86-b56d-0379960ce764
SIO_000300: 1
SIO_000628: feature:30144511-30144710:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30476591..30476790
location: region:30476591-30476790:1
BFO_0000051: feature:30476591-30476790:1:region
SIO_000974: 993d5c01-c69c-4c9a-af90-41975fa60567

position:30476591:1
position: 30476591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30476790:1
position: 30476790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

993d5c01-c69c-4c9a-af90-41975fa60567
SIO_000300: 1
SIO_000628: feature:30476591-30476790:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33721640..33721839
location: region:33721640-33721839:1
BFO_0000051: feature:33721640-33721839:1:region
SIO_000974: 8bfc5f14-fa07-4e87-b00c-e1855443cc87

position:33721640:1
position: 33721640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33721839:1
position: 33721839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8bfc5f14-fa07-4e87-b00c-e1855443cc87
SIO_000300: 1
SIO_000628: feature:33721640-33721839:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36306840..36307039
location: region:36306840-36307039:1
BFO_0000051: feature:36306840-36307039:1:region
SIO_000974: 1a1e6a4e-2dd8-45db-a663-9ac334b9a84a

position:36306840:1
position: 36306840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36307039:1
position: 36307039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a1e6a4e-2dd8-45db-a663-9ac334b9a84a
SIO_000300: 1
SIO_000628: feature:36306840-36307039:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45227980..45228179
location: region:45227980-45228179:1
BFO_0000051: feature:45227980-45228179:1:region
SIO_000974: 3ec8fd42-af92-4180-bd63-113afc21b25c

position:45227980:1
position: 45227980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45228179:1
position: 45228179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ec8fd42-af92-4180-bd63-113afc21b25c
SIO_000300: 1
SIO_000628: feature:45227980-45228179:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50304044..50304243
location: region:50304044-50304243:1
BFO_0000051: feature:50304044-50304243:1:region
SIO_000974: ae4affde-0ac6-4ac6-9c63-6af64238dd2e

position:50304044:1
position: 50304044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50304243:1
position: 50304243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae4affde-0ac6-4ac6-9c63-6af64238dd2e
SIO_000300: 1
SIO_000628: feature:50304044-50304243:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53971638..53971837
location: region:53971638-53971837:1
BFO_0000051: feature:53971638-53971837:1:region
SIO_000974: 1efdeb91-12c8-45cb-9b19-3649b24544e5

position:53971638:1
position: 53971638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53971837:1
position: 53971837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1efdeb91-12c8-45cb-9b19-3649b24544e5
SIO_000300: 1
SIO_000628: feature:53971638-53971837:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61154325..61154524
location: region:61154325-61154524:1
BFO_0000051: feature:61154325-61154524:1:region
SIO_000974: ea96fe83-3ff4-4e10-9d5a-67e0a4acbe03

position:61154325:1
position: 61154325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61154524:1
position: 61154524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ea96fe83-3ff4-4e10-9d5a-67e0a4acbe03
SIO_000300: 1
SIO_000628: feature:61154325-61154524:1:region

Orthosia incerta genome assembly, chromosome: 2.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 2.
sequence version: OX411743.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 39078381
topology: linear
RO_0000086: SO_0000987
location: 1..39078381
location: region:1-39078381:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39078381:1
position: 39078381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39078381:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3573550..3573749
location: region:3573550-3573749:1
BFO_0000051: feature:3573550-3573749:1:region
SIO_000974: 7f235e13-90a1-4981-87d6-18ce9ef1c333

position:3573550:1
position: 3573550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3573749:1
position: 3573749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f235e13-90a1-4981-87d6-18ce9ef1c333
SIO_000300: 1
SIO_000628: feature:3573550-3573749:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4040940..4041139
location: region:4040940-4041139:1
BFO_0000051: feature:4040940-4041139:1:region
SIO_000974: 07ec6e61-b80f-47f8-bc0d-cee4eecee056

position:4040940:1
position: 4040940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4041139:1
position: 4041139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07ec6e61-b80f-47f8-bc0d-cee4eecee056
SIO_000300: 1
SIO_000628: feature:4040940-4041139:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7829894..7830093
location: region:7829894-7830093:1
BFO_0000051: feature:7829894-7830093:1:region
SIO_000974: 56fd916f-3611-416d-831c-7ccafd2ac5e7

position:7829894:1
position: 7829894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7830093:1
position: 7830093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56fd916f-3611-416d-831c-7ccafd2ac5e7
SIO_000300: 1
SIO_000628: feature:7829894-7830093:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13058376..13058575
location: region:13058376-13058575:1
BFO_0000051: feature:13058376-13058575:1:region
SIO_000974: a9ce2f29-f143-499c-a509-d9aeaab732ae

position:13058376:1
position: 13058376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13058575:1
position: 13058575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9ce2f29-f143-499c-a509-d9aeaab732ae
SIO_000300: 1
SIO_000628: feature:13058376-13058575:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17253715..17253914
location: region:17253715-17253914:1
BFO_0000051: feature:17253715-17253914:1:region
SIO_000974: ae07a8e2-c4b7-4fdc-8d00-674d05f37483

position:17253715:1
position: 17253715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17253914:1
position: 17253914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae07a8e2-c4b7-4fdc-8d00-674d05f37483
SIO_000300: 1
SIO_000628: feature:17253715-17253914:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20040063..20040262
location: region:20040063-20040262:1
BFO_0000051: feature:20040063-20040262:1:region
SIO_000974: a9ef08bc-1bd4-4342-a579-3c0e2dc4c9b5

position:20040063:1
position: 20040063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20040262:1
position: 20040262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9ef08bc-1bd4-4342-a579-3c0e2dc4c9b5
SIO_000300: 1
SIO_000628: feature:20040063-20040262:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22923263..22923462
location: region:22923263-22923462:1
BFO_0000051: feature:22923263-22923462:1:region
SIO_000974: 240e86da-c130-4b75-842e-c94d798325da

position:22923263:1
position: 22923263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22923462:1
position: 22923462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

240e86da-c130-4b75-842e-c94d798325da
SIO_000300: 1
SIO_000628: feature:22923263-22923462:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26088470..26088669
location: region:26088470-26088669:1
BFO_0000051: feature:26088470-26088669:1:region
SIO_000974: 4b3e036a-da92-4ab1-b8c6-42d7bbf67780

position:26088470:1
position: 26088470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26088669:1
position: 26088669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b3e036a-da92-4ab1-b8c6-42d7bbf67780
SIO_000300: 1
SIO_000628: feature:26088470-26088669:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26225634..26225833
location: region:26225634-26225833:1
BFO_0000051: feature:26225634-26225833:1:region
SIO_000974: 33d9357d-25bf-48a3-9bd8-d99743527cd1

position:26225634:1
position: 26225634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26225833:1
position: 26225833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

33d9357d-25bf-48a3-9bd8-d99743527cd1
SIO_000300: 1
SIO_000628: feature:26225634-26225833:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26463340..26463539
location: region:26463340-26463539:1
BFO_0000051: feature:26463340-26463539:1:region
SIO_000974: 2fb6da7a-a440-4faf-862e-a6499a18382e

position:26463340:1
position: 26463340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26463539:1
position: 26463539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2fb6da7a-a440-4faf-862e-a6499a18382e
SIO_000300: 1
SIO_000628: feature:26463340-26463539:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30468192..30468391
location: region:30468192-30468391:1
BFO_0000051: feature:30468192-30468391:1:region
SIO_000974: 8234d948-d9b0-4abf-a6e7-2988e5dae9c8

position:30468192:1
position: 30468192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30468391:1
position: 30468391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8234d948-d9b0-4abf-a6e7-2988e5dae9c8
SIO_000300: 1
SIO_000628: feature:30468192-30468391:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30694380..30694579
location: region:30694380-30694579:1
BFO_0000051: feature:30694380-30694579:1:region
SIO_000974: 830e6422-a222-4aa3-869d-fab77ceb8263

position:30694380:1
position: 30694380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30694579:1
position: 30694579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

830e6422-a222-4aa3-869d-fab77ceb8263
SIO_000300: 1
SIO_000628: feature:30694380-30694579:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34694971..34695170
location: region:34694971-34695170:1
BFO_0000051: feature:34694971-34695170:1:region
SIO_000974: f0aef6af-61f4-403b-a6f1-0bdc707438bc

position:34694971:1
position: 34694971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34695170:1
position: 34695170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0aef6af-61f4-403b-a6f1-0bdc707438bc
SIO_000300: 1
SIO_000628: feature:34694971-34695170:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35460466..35460665
location: region:35460466-35460665:1
BFO_0000051: feature:35460466-35460665:1:region
SIO_000974: b16360af-0f09-4be6-be50-a3979346573b

position:35460466:1
position: 35460466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35460665:1
position: 35460665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b16360af-0f09-4be6-be50-a3979346573b
SIO_000300: 1
SIO_000628: feature:35460466-35460665:1:region

Orthosia incerta genome assembly, chromosome: 3.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 3.
sequence version: OX411744.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 34557854
topology: linear
RO_0000086: SO_0000987
location: 1..34557854
location: region:1-34557854:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34557854:1
position: 34557854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34557854:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1511312..1511511
location: region:1511312-1511511:1
BFO_0000051: feature:1511312-1511511:1:region
SIO_000974: 16ca8ab5-b0e0-4c09-9be6-e81fc113cb7e

position:1511312:1
position: 1511312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1511511:1
position: 1511511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16ca8ab5-b0e0-4c09-9be6-e81fc113cb7e
SIO_000300: 1
SIO_000628: feature:1511312-1511511:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3378398..3378597
location: region:3378398-3378597:1
BFO_0000051: feature:3378398-3378597:1:region
SIO_000974: 041018a1-d95c-4ce0-a9af-686515a993b3

position:3378398:1
position: 3378398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3378597:1
position: 3378597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

041018a1-d95c-4ce0-a9af-686515a993b3
SIO_000300: 1
SIO_000628: feature:3378398-3378597:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4122226..4122425
location: region:4122226-4122425:1
BFO_0000051: feature:4122226-4122425:1:region
SIO_000974: 7a917a05-407d-49ad-accb-1247778ab5fd

position:4122226:1
position: 4122226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4122425:1
position: 4122425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a917a05-407d-49ad-accb-1247778ab5fd
SIO_000300: 1
SIO_000628: feature:4122226-4122425:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6598497..6598696
location: region:6598497-6598696:1
BFO_0000051: feature:6598497-6598696:1:region
SIO_000974: cabcf700-5783-4df4-8826-1d9a18a70adf

position:6598497:1
position: 6598497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6598696:1
position: 6598696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cabcf700-5783-4df4-8826-1d9a18a70adf
SIO_000300: 1
SIO_000628: feature:6598497-6598696:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11043697..11043896
location: region:11043697-11043896:1
BFO_0000051: feature:11043697-11043896:1:region
SIO_000974: 5141dae6-c166-4269-95b0-58e129eba82d

position:11043697:1
position: 11043697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11043896:1
position: 11043896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5141dae6-c166-4269-95b0-58e129eba82d
SIO_000300: 1
SIO_000628: feature:11043697-11043896:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13016285..13016484
location: region:13016285-13016484:1
BFO_0000051: feature:13016285-13016484:1:region
SIO_000974: 8cf3ff8f-e7a9-4137-964b-42f367785b35

position:13016285:1
position: 13016285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13016484:1
position: 13016484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8cf3ff8f-e7a9-4137-964b-42f367785b35
SIO_000300: 1
SIO_000628: feature:13016285-13016484:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13772714..13772913
location: region:13772714-13772913:1
BFO_0000051: feature:13772714-13772913:1:region
SIO_000974: cc85bf5c-1004-49e5-a74b-db8f31012bce

position:13772714:1
position: 13772714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13772913:1
position: 13772913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cc85bf5c-1004-49e5-a74b-db8f31012bce
SIO_000300: 1
SIO_000628: feature:13772714-13772913:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16900619..16900818
location: region:16900619-16900818:1
BFO_0000051: feature:16900619-16900818:1:region
SIO_000974: b2288f49-29a1-42e1-a11a-57492b6a9a89

position:16900619:1
position: 16900619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16900818:1
position: 16900818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b2288f49-29a1-42e1-a11a-57492b6a9a89
SIO_000300: 1
SIO_000628: feature:16900619-16900818:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20345533..20345732
location: region:20345533-20345732:1
BFO_0000051: feature:20345533-20345732:1:region
SIO_000974: a5ad001c-acd8-4ee1-a247-6601e37f426f

position:20345533:1
position: 20345533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20345732:1
position: 20345732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5ad001c-acd8-4ee1-a247-6601e37f426f
SIO_000300: 1
SIO_000628: feature:20345533-20345732:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26944077..26944276
location: region:26944077-26944276:1
BFO_0000051: feature:26944077-26944276:1:region
SIO_000974: 881c01e7-3068-4baa-9bad-7f7595251417

position:26944077:1
position: 26944077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26944276:1
position: 26944276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

881c01e7-3068-4baa-9bad-7f7595251417
SIO_000300: 1
SIO_000628: feature:26944077-26944276:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29366357..29366556
location: region:29366357-29366556:1
BFO_0000051: feature:29366357-29366556:1:region
SIO_000974: 478b49e0-fa0c-40c2-a229-b17e82846fa7

position:29366357:1
position: 29366357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29366556:1
position: 29366556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

478b49e0-fa0c-40c2-a229-b17e82846fa7
SIO_000300: 1
SIO_000628: feature:29366357-29366556:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31416683..31416882
location: region:31416683-31416882:1
BFO_0000051: feature:31416683-31416882:1:region
SIO_000974: b202d232-c7af-4140-972b-4cf5cbf67bfd

position:31416683:1
position: 31416683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31416882:1
position: 31416882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b202d232-c7af-4140-972b-4cf5cbf67bfd
SIO_000300: 1
SIO_000628: feature:31416683-31416882:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31603848..31604047
location: region:31603848-31604047:1
BFO_0000051: feature:31603848-31604047:1:region
SIO_000974: c35f58ce-0833-4cca-bfaa-96d111fe6b01

position:31603848:1
position: 31603848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31604047:1
position: 31604047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c35f58ce-0833-4cca-bfaa-96d111fe6b01
SIO_000300: 1
SIO_000628: feature:31603848-31604047:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33366317..33366516
location: region:33366317-33366516:1
BFO_0000051: feature:33366317-33366516:1:region
SIO_000974: bd5dd42a-8711-447f-b2b0-150623ff342a

position:33366317:1
position: 33366317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33366516:1
position: 33366516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd5dd42a-8711-447f-b2b0-150623ff342a
SIO_000300: 1
SIO_000628: feature:33366317-33366516:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34110922..34111121
location: region:34110922-34111121:1
BFO_0000051: feature:34110922-34111121:1:region
SIO_000974: b367059c-702b-4bf9-beae-6716644df53c

position:34110922:1
position: 34110922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34111121:1
position: 34111121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b367059c-702b-4bf9-beae-6716644df53c
SIO_000300: 1
SIO_000628: feature:34110922-34111121:1:region

Orthosia incerta genome assembly, chromosome: 4.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 4.
sequence version: OX411745.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 34368569
topology: linear
RO_0000086: SO_0000987
location: 1..34368569
location: region:1-34368569:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34368569:1
position: 34368569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34368569:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1479143..1479342
location: region:1479143-1479342:1
BFO_0000051: feature:1479143-1479342:1:region
SIO_000974: c33f5371-cbd5-406d-aa82-2d141ba91e9f

position:1479143:1
position: 1479143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1479342:1
position: 1479342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c33f5371-cbd5-406d-aa82-2d141ba91e9f
SIO_000300: 1
SIO_000628: feature:1479143-1479342:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1586403..1586602
location: region:1586403-1586602:1
BFO_0000051: feature:1586403-1586602:1:region
SIO_000974: dab84cda-1af1-4965-9fc5-20d9dae0a9e3

position:1586403:1
position: 1586403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1586602:1
position: 1586602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dab84cda-1af1-4965-9fc5-20d9dae0a9e3
SIO_000300: 1
SIO_000628: feature:1586403-1586602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4608900..4609099
location: region:4608900-4609099:1
BFO_0000051: feature:4608900-4609099:1:region
SIO_000974: fc47941d-bca8-45b2-a42a-575ffbc8f2fa

position:4608900:1
position: 4608900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4609099:1
position: 4609099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc47941d-bca8-45b2-a42a-575ffbc8f2fa
SIO_000300: 1
SIO_000628: feature:4608900-4609099:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5481505..5481704
location: region:5481505-5481704:1
BFO_0000051: feature:5481505-5481704:1:region
SIO_000974: 7fa3c564-7480-42ec-b743-9d1a0aec3e4e

position:5481505:1
position: 5481505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5481704:1
position: 5481704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7fa3c564-7480-42ec-b743-9d1a0aec3e4e
SIO_000300: 1
SIO_000628: feature:5481505-5481704:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9149147..9149346
location: region:9149147-9149346:1
BFO_0000051: feature:9149147-9149346:1:region
SIO_000974: 0a97a9b1-cf70-4b29-b270-0c8f5a6a7f5d

position:9149147:1
position: 9149147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9149346:1
position: 9149346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a97a9b1-cf70-4b29-b270-0c8f5a6a7f5d
SIO_000300: 1
SIO_000628: feature:9149147-9149346:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10048240..10048439
location: region:10048240-10048439:1
BFO_0000051: feature:10048240-10048439:1:region
SIO_000974: d49fcbd2-f0d0-4fd1-aa6c-5ec823d68292

position:10048240:1
position: 10048240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10048439:1
position: 10048439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d49fcbd2-f0d0-4fd1-aa6c-5ec823d68292
SIO_000300: 1
SIO_000628: feature:10048240-10048439:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11382685..11382884
location: region:11382685-11382884:1
BFO_0000051: feature:11382685-11382884:1:region
SIO_000974: be9d5b8e-0062-4405-abb6-050ad69d1da9

position:11382685:1
position: 11382685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11382884:1
position: 11382884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be9d5b8e-0062-4405-abb6-050ad69d1da9
SIO_000300: 1
SIO_000628: feature:11382685-11382884:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17710817..17711016
location: region:17710817-17711016:1
BFO_0000051: feature:17710817-17711016:1:region
SIO_000974: 581e57c9-78e2-4195-9c1b-31fde3f61efc

position:17710817:1
position: 17710817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17711016:1
position: 17711016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

581e57c9-78e2-4195-9c1b-31fde3f61efc
SIO_000300: 1
SIO_000628: feature:17710817-17711016:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20546055..20546254
location: region:20546055-20546254:1
BFO_0000051: feature:20546055-20546254:1:region
SIO_000974: ce19c820-ee9c-42dd-b941-2c4c835e531d

position:20546055:1
position: 20546055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20546254:1
position: 20546254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ce19c820-ee9c-42dd-b941-2c4c835e531d
SIO_000300: 1
SIO_000628: feature:20546055-20546254:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20924266..20924465
location: region:20924266-20924465:1
BFO_0000051: feature:20924266-20924465:1:region
SIO_000974: b6c6cc7b-5221-4e7e-986a-444868fe670d

position:20924266:1
position: 20924266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20924465:1
position: 20924465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6c6cc7b-5221-4e7e-986a-444868fe670d
SIO_000300: 1
SIO_000628: feature:20924266-20924465:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27146802..27147001
location: region:27146802-27147001:1
BFO_0000051: feature:27146802-27147001:1:region
SIO_000974: 268856cf-b123-49c0-bbcc-ec908e84d65d

position:27146802:1
position: 27146802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27147001:1
position: 27147001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

268856cf-b123-49c0-bbcc-ec908e84d65d
SIO_000300: 1
SIO_000628: feature:27146802-27147001:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28673494..28673693
location: region:28673494-28673693:1
BFO_0000051: feature:28673494-28673693:1:region
SIO_000974: b12c6386-2316-414b-a62e-347d858e48e3

position:28673494:1
position: 28673494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28673693:1
position: 28673693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b12c6386-2316-414b-a62e-347d858e48e3
SIO_000300: 1
SIO_000628: feature:28673494-28673693:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29012637..29012836
location: region:29012637-29012836:1
BFO_0000051: feature:29012637-29012836:1:region
SIO_000974: 9d5b5bf2-d5ee-4de1-894f-61b2184e32b3

position:29012637:1
position: 29012637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29012836:1
position: 29012836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d5b5bf2-d5ee-4de1-894f-61b2184e32b3
SIO_000300: 1
SIO_000628: feature:29012637-29012836:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29216370..29216569
location: region:29216370-29216569:1
BFO_0000051: feature:29216370-29216569:1:region
SIO_000974: 2dbb67d0-ee68-4f80-bf14-5fe59581e374

position:29216370:1
position: 29216370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29216569:1
position: 29216569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dbb67d0-ee68-4f80-bf14-5fe59581e374
SIO_000300: 1
SIO_000628: feature:29216370-29216569:1:region

Orthosia incerta genome assembly, chromosome: 5.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 5.
sequence version: OX411746.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 33557838
topology: linear
RO_0000086: SO_0000987
location: 1..33557838
location: region:1-33557838:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33557838:1
position: 33557838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33557838:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2299751..2299950
location: region:2299751-2299950:1
BFO_0000051: feature:2299751-2299950:1:region
SIO_000974: 105488db-9c34-4c16-98d2-0776d33dbc4a

position:2299751:1
position: 2299751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2299950:1
position: 2299950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

105488db-9c34-4c16-98d2-0776d33dbc4a
SIO_000300: 1
SIO_000628: feature:2299751-2299950:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2650543..2650742
location: region:2650543-2650742:1
BFO_0000051: feature:2650543-2650742:1:region
SIO_000974: 56919e12-b71d-4a5a-a888-11adf3c2edb5

position:2650543:1
position: 2650543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2650742:1
position: 2650742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56919e12-b71d-4a5a-a888-11adf3c2edb5
SIO_000300: 1
SIO_000628: feature:2650543-2650742:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2982912..2983111
location: region:2982912-2983111:1
BFO_0000051: feature:2982912-2983111:1:region
SIO_000974: 5ecd3aa1-bb69-4a18-b12c-850acee63ddf

position:2982912:1
position: 2982912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2983111:1
position: 2983111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ecd3aa1-bb69-4a18-b12c-850acee63ddf
SIO_000300: 1
SIO_000628: feature:2982912-2983111:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24464423..24464622
location: region:24464423-24464622:1
BFO_0000051: feature:24464423-24464622:1:region
SIO_000974: 76c06e91-4a48-4ef9-bb13-c4c873ebdae7

position:24464423:1
position: 24464423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24464622:1
position: 24464622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76c06e91-4a48-4ef9-bb13-c4c873ebdae7
SIO_000300: 1
SIO_000628: feature:24464423-24464622:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29854166..29854365
location: region:29854166-29854365:1
BFO_0000051: feature:29854166-29854365:1:region
SIO_000974: 48d0802d-3c83-4e63-8b91-396b56157ed6

position:29854166:1
position: 29854166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29854365:1
position: 29854365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

48d0802d-3c83-4e63-8b91-396b56157ed6
SIO_000300: 1
SIO_000628: feature:29854166-29854365:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31690420..31690619
location: region:31690420-31690619:1
BFO_0000051: feature:31690420-31690619:1:region
SIO_000974: 0a301851-054d-43ec-9509-df161017d7c5

position:31690420:1
position: 31690420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31690619:1
position: 31690619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a301851-054d-43ec-9509-df161017d7c5
SIO_000300: 1
SIO_000628: feature:31690420-31690619:1:region

Orthosia incerta genome assembly, chromosome: 6.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 6.
sequence version: OX411747.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 33505764
topology: linear
RO_0000086: SO_0000987
location: 1..33505764
location: region:1-33505764:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33505764:1
position: 33505764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33505764:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1554490..1554689
location: region:1554490-1554689:1
BFO_0000051: feature:1554490-1554689:1:region
SIO_000974: ff08dc4e-e65c-41f6-9d0c-0c48fc2d6e3a

position:1554490:1
position: 1554490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1554689:1
position: 1554689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff08dc4e-e65c-41f6-9d0c-0c48fc2d6e3a
SIO_000300: 1
SIO_000628: feature:1554490-1554689:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6063101..6063300
location: region:6063101-6063300:1
BFO_0000051: feature:6063101-6063300:1:region
SIO_000974: 4d5b8583-1684-4061-a558-f3aa7f1ba6ea

position:6063101:1
position: 6063101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6063300:1
position: 6063300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4d5b8583-1684-4061-a558-f3aa7f1ba6ea
SIO_000300: 1
SIO_000628: feature:6063101-6063300:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14215281..14215480
location: region:14215281-14215480:1
BFO_0000051: feature:14215281-14215480:1:region
SIO_000974: a00bbfcf-4ab3-43f6-8529-ef343ce15abd

position:14215281:1
position: 14215281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14215480:1
position: 14215480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a00bbfcf-4ab3-43f6-8529-ef343ce15abd
SIO_000300: 1
SIO_000628: feature:14215281-14215480:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16104652..16104851
location: region:16104652-16104851:1
BFO_0000051: feature:16104652-16104851:1:region
SIO_000974: c53b1ffb-cfd3-43a2-a2c1-483f1b5c1adb

position:16104652:1
position: 16104652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16104851:1
position: 16104851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c53b1ffb-cfd3-43a2-a2c1-483f1b5c1adb
SIO_000300: 1
SIO_000628: feature:16104652-16104851:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21900644..21900843
location: region:21900644-21900843:1
BFO_0000051: feature:21900644-21900843:1:region
SIO_000974: bd4e1f18-d121-46e5-b2f8-588be9b72a34

position:21900644:1
position: 21900644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21900843:1
position: 21900843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd4e1f18-d121-46e5-b2f8-588be9b72a34
SIO_000300: 1
SIO_000628: feature:21900644-21900843:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22139380..22139579
location: region:22139380-22139579:1
BFO_0000051: feature:22139380-22139579:1:region
SIO_000974: 163859af-25fc-4939-a138-540ef7456bd8

position:22139380:1
position: 22139380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22139579:1
position: 22139579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

163859af-25fc-4939-a138-540ef7456bd8
SIO_000300: 1
SIO_000628: feature:22139380-22139579:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22249247..22249446
location: region:22249247-22249446:1
BFO_0000051: feature:22249247-22249446:1:region
SIO_000974: f243498a-369d-48ac-b628-b0c5df39a02b

position:22249247:1
position: 22249247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22249446:1
position: 22249446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f243498a-369d-48ac-b628-b0c5df39a02b
SIO_000300: 1
SIO_000628: feature:22249247-22249446:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22574311..22574510
location: region:22574311-22574510:1
BFO_0000051: feature:22574311-22574510:1:region
SIO_000974: db76082c-00a8-4440-b8fc-2dd09b73a09a

position:22574311:1
position: 22574311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22574510:1
position: 22574510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db76082c-00a8-4440-b8fc-2dd09b73a09a
SIO_000300: 1
SIO_000628: feature:22574311-22574510:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27223982..27224181
location: region:27223982-27224181:1
BFO_0000051: feature:27223982-27224181:1:region
SIO_000974: 5fc30eb6-adba-440f-b73a-07ee87b7cece

position:27223982:1
position: 27223982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27224181:1
position: 27224181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5fc30eb6-adba-440f-b73a-07ee87b7cece
SIO_000300: 1
SIO_000628: feature:27223982-27224181:1:region

Orthosia incerta genome assembly, chromosome: 7.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 7.
sequence version: OX411748.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 33404192
topology: linear
RO_0000086: SO_0000987
location: 1..33404192
location: region:1-33404192:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33404192:1
position: 33404192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33404192:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2412293..2412492
location: region:2412293-2412492:1
BFO_0000051: feature:2412293-2412492:1:region
SIO_000974: 2765b015-cf23-4d07-90ae-a4e6e0e31a04

position:2412293:1
position: 2412293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2412492:1
position: 2412492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2765b015-cf23-4d07-90ae-a4e6e0e31a04
SIO_000300: 1
SIO_000628: feature:2412293-2412492:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4338801..4339000
location: region:4338801-4339000:1
BFO_0000051: feature:4338801-4339000:1:region
SIO_000974: dc5d5c61-8182-4537-85a4-1614256961e7

position:4338801:1
position: 4338801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4339000:1
position: 4339000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dc5d5c61-8182-4537-85a4-1614256961e7
SIO_000300: 1
SIO_000628: feature:4338801-4339000:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4411080..4411279
location: region:4411080-4411279:1
BFO_0000051: feature:4411080-4411279:1:region
SIO_000974: ceec850c-855d-4945-b96c-c2ed40e72319

position:4411080:1
position: 4411080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4411279:1
position: 4411279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceec850c-855d-4945-b96c-c2ed40e72319
SIO_000300: 1
SIO_000628: feature:4411080-4411279:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6896936..6897135
location: region:6896936-6897135:1
BFO_0000051: feature:6896936-6897135:1:region
SIO_000974: 2cf702fb-a331-4e18-a163-e1c7be827fbd

position:6896936:1
position: 6896936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6897135:1
position: 6897135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2cf702fb-a331-4e18-a163-e1c7be827fbd
SIO_000300: 1
SIO_000628: feature:6896936-6897135:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17194402..17194601
location: region:17194402-17194601:1
BFO_0000051: feature:17194402-17194601:1:region
SIO_000974: a4eceb8c-497c-47b0-9dc7-9087413607f4

position:17194402:1
position: 17194402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17194601:1
position: 17194601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4eceb8c-497c-47b0-9dc7-9087413607f4
SIO_000300: 1
SIO_000628: feature:17194402-17194601:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21382010..21382209
location: region:21382010-21382209:1
BFO_0000051: feature:21382010-21382209:1:region
SIO_000974: cdd7eed6-dbee-4bf3-8c7e-219f2370e288

position:21382010:1
position: 21382010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21382209:1
position: 21382209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cdd7eed6-dbee-4bf3-8c7e-219f2370e288
SIO_000300: 1
SIO_000628: feature:21382010-21382209:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22349519..22349718
location: region:22349519-22349718:1
BFO_0000051: feature:22349519-22349718:1:region
SIO_000974: 8dc7f862-7c72-41f3-bd45-5181be145984

position:22349519:1
position: 22349519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22349718:1
position: 22349718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8dc7f862-7c72-41f3-bd45-5181be145984
SIO_000300: 1
SIO_000628: feature:22349519-22349718:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23935719..23935918
location: region:23935719-23935918:1
BFO_0000051: feature:23935719-23935918:1:region
SIO_000974: b1f679bd-b16a-45df-8bc2-94725006b3d1

position:23935719:1
position: 23935719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23935918:1
position: 23935918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b1f679bd-b16a-45df-8bc2-94725006b3d1
SIO_000300: 1
SIO_000628: feature:23935719-23935918:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25485784..25485983
location: region:25485784-25485983:1
BFO_0000051: feature:25485784-25485983:1:region
SIO_000974: 5b16cabc-e616-415b-a074-ccdd34873a52

position:25485784:1
position: 25485784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25485983:1
position: 25485983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b16cabc-e616-415b-a074-ccdd34873a52
SIO_000300: 1
SIO_000628: feature:25485784-25485983:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27362507..27362706
location: region:27362507-27362706:1
BFO_0000051: feature:27362507-27362706:1:region
SIO_000974: e4e253df-7dba-4d53-80fc-4811bd427d77

position:27362507:1
position: 27362507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27362706:1
position: 27362706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4e253df-7dba-4d53-80fc-4811bd427d77
SIO_000300: 1
SIO_000628: feature:27362507-27362706:1:region

Orthosia incerta genome assembly, chromosome: 8.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 8.
sequence version: OX411749.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 33087989
topology: linear
RO_0000086: SO_0000987
location: 1..33087989
location: region:1-33087989:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33087989:1
position: 33087989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33087989:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 863305..863504
location: region:863305-863504:1
BFO_0000051: feature:863305-863504:1:region
SIO_000974: c387ab23-bd18-4a27-922a-e5704094a252

position:863305:1
position: 863305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:863504:1
position: 863504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c387ab23-bd18-4a27-922a-e5704094a252
SIO_000300: 1
SIO_000628: feature:863305-863504:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4068275..4068474
location: region:4068275-4068474:1
BFO_0000051: feature:4068275-4068474:1:region
SIO_000974: 7ba1215b-4831-4c37-8295-2fe37458a42d

position:4068275:1
position: 4068275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4068474:1
position: 4068474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ba1215b-4831-4c37-8295-2fe37458a42d
SIO_000300: 1
SIO_000628: feature:4068275-4068474:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4982639..4982838
location: region:4982639-4982838:1
BFO_0000051: feature:4982639-4982838:1:region
SIO_000974: 686afb90-a1a5-475f-ab03-0a12b0ed159d

position:4982639:1
position: 4982639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4982838:1
position: 4982838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

686afb90-a1a5-475f-ab03-0a12b0ed159d
SIO_000300: 1
SIO_000628: feature:4982639-4982838:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6602431..6602630
location: region:6602431-6602630:1
BFO_0000051: feature:6602431-6602630:1:region
SIO_000974: bac6e5b6-b214-492a-905b-4403b79dc36d

position:6602431:1
position: 6602431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6602630:1
position: 6602630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bac6e5b6-b214-492a-905b-4403b79dc36d
SIO_000300: 1
SIO_000628: feature:6602431-6602630:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12328811..12329010
location: region:12328811-12329010:1
BFO_0000051: feature:12328811-12329010:1:region
SIO_000974: bb860f4a-95b9-4ab2-82b7-78d5b71bf0b1

position:12328811:1
position: 12328811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12329010:1
position: 12329010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb860f4a-95b9-4ab2-82b7-78d5b71bf0b1
SIO_000300: 1
SIO_000628: feature:12328811-12329010:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15446111..15446310
location: region:15446111-15446310:1
BFO_0000051: feature:15446111-15446310:1:region
SIO_000974: 633afe03-1ad9-47ed-87eb-6311d55603c4

position:15446111:1
position: 15446111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15446310:1
position: 15446310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

633afe03-1ad9-47ed-87eb-6311d55603c4
SIO_000300: 1
SIO_000628: feature:15446111-15446310:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15524677..15524876
location: region:15524677-15524876:1
BFO_0000051: feature:15524677-15524876:1:region
SIO_000974: 3cc3803c-5000-4f26-936b-070417332038

position:15524677:1
position: 15524677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15524876:1
position: 15524876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3cc3803c-5000-4f26-936b-070417332038
SIO_000300: 1
SIO_000628: feature:15524677-15524876:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15759233..15759432
location: region:15759233-15759432:1
BFO_0000051: feature:15759233-15759432:1:region
SIO_000974: c4e4aeff-cd80-4430-9920-d0f65127f50e

position:15759233:1
position: 15759233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15759432:1
position: 15759432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4e4aeff-cd80-4430-9920-d0f65127f50e
SIO_000300: 1
SIO_000628: feature:15759233-15759432:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16972856..16973055
location: region:16972856-16973055:1
BFO_0000051: feature:16972856-16973055:1:region
SIO_000974: fb8d230d-f8ff-4cda-a063-16690de74ca5

position:16972856:1
position: 16972856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16973055:1
position: 16973055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fb8d230d-f8ff-4cda-a063-16690de74ca5
SIO_000300: 1
SIO_000628: feature:16972856-16973055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20577555..20577754
location: region:20577555-20577754:1
BFO_0000051: feature:20577555-20577754:1:region
SIO_000974: 659e31b9-ac39-4d83-aabc-21211bb75714

position:20577555:1
position: 20577555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20577754:1
position: 20577754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

659e31b9-ac39-4d83-aabc-21211bb75714
SIO_000300: 1
SIO_000628: feature:20577555-20577754:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20841919..20842118
location: region:20841919-20842118:1
BFO_0000051: feature:20841919-20842118:1:region
SIO_000974: 74df61a5-4e07-4fa9-912f-8ecce2c9bc0f

position:20841919:1
position: 20841919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20842118:1
position: 20842118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74df61a5-4e07-4fa9-912f-8ecce2c9bc0f
SIO_000300: 1
SIO_000628: feature:20841919-20842118:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22246024..22246223
location: region:22246024-22246223:1
BFO_0000051: feature:22246024-22246223:1:region
SIO_000974: c287bbf4-6aba-4091-ae94-07bbdeb5ef4d

position:22246024:1
position: 22246024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22246223:1
position: 22246223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c287bbf4-6aba-4091-ae94-07bbdeb5ef4d
SIO_000300: 1
SIO_000628: feature:22246024-22246223:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22549926..22550125
location: region:22549926-22550125:1
BFO_0000051: feature:22549926-22550125:1:region
SIO_000974: cdeda7cd-e1de-4f07-824a-48ed2fff1e87

position:22549926:1
position: 22549926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22550125:1
position: 22550125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cdeda7cd-e1de-4f07-824a-48ed2fff1e87
SIO_000300: 1
SIO_000628: feature:22549926-22550125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23452126..23452325
location: region:23452126-23452325:1
BFO_0000051: feature:23452126-23452325:1:region
SIO_000974: 9985c7d6-65f8-46b8-ac46-8d2ca9478086

position:23452126:1
position: 23452126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23452325:1
position: 23452325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9985c7d6-65f8-46b8-ac46-8d2ca9478086
SIO_000300: 1
SIO_000628: feature:23452126-23452325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23718844..23719043
location: region:23718844-23719043:1
BFO_0000051: feature:23718844-23719043:1:region
SIO_000974: fe364d6d-ea26-4fbd-aec3-ea52782dbe2b

position:23718844:1
position: 23718844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23719043:1
position: 23719043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe364d6d-ea26-4fbd-aec3-ea52782dbe2b
SIO_000300: 1
SIO_000628: feature:23718844-23719043:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26079290..26079489
location: region:26079290-26079489:1
BFO_0000051: feature:26079290-26079489:1:region
SIO_000974: 59cf46e6-33a0-4299-a58a-d0b54afe675f

position:26079290:1
position: 26079290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26079489:1
position: 26079489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59cf46e6-33a0-4299-a58a-d0b54afe675f
SIO_000300: 1
SIO_000628: feature:26079290-26079489:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30216460..30216659
location: region:30216460-30216659:1
BFO_0000051: feature:30216460-30216659:1:region
SIO_000974: 5e9d3e8b-436f-4fba-b3bc-6fcae7dd2355

position:30216460:1
position: 30216460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30216659:1
position: 30216659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e9d3e8b-436f-4fba-b3bc-6fcae7dd2355
SIO_000300: 1
SIO_000628: feature:30216460-30216659:1:region

Orthosia incerta genome assembly, chromosome: 9.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 9.
sequence version: OX411750.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 32542983
topology: linear
RO_0000086: SO_0000987
location: 1..32542983
location: region:1-32542983:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32542983:1
position: 32542983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32542983:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4457001..4457200
location: region:4457001-4457200:1
BFO_0000051: feature:4457001-4457200:1:region
SIO_000974: 803b4547-ff99-4b89-9753-e9a15e3410bd

position:4457001:1
position: 4457001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4457200:1
position: 4457200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

803b4547-ff99-4b89-9753-e9a15e3410bd
SIO_000300: 1
SIO_000628: feature:4457001-4457200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6090568..6090767
location: region:6090568-6090767:1
BFO_0000051: feature:6090568-6090767:1:region
SIO_000974: 53a24bf5-43cd-4af5-982b-d36890da445b

position:6090568:1
position: 6090568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6090767:1
position: 6090767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

53a24bf5-43cd-4af5-982b-d36890da445b
SIO_000300: 1
SIO_000628: feature:6090568-6090767:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6555802..6556001
location: region:6555802-6556001:1
BFO_0000051: feature:6555802-6556001:1:region
SIO_000974: 92a010c3-12d6-4826-ace2-d63524d00e08

position:6555802:1
position: 6555802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6556001:1
position: 6556001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92a010c3-12d6-4826-ace2-d63524d00e08
SIO_000300: 1
SIO_000628: feature:6555802-6556001:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9583427..9583626
location: region:9583427-9583626:1
BFO_0000051: feature:9583427-9583626:1:region
SIO_000974: e2390507-f226-4b57-a47e-fe700d6ab769

position:9583427:1
position: 9583427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9583626:1
position: 9583626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2390507-f226-4b57-a47e-fe700d6ab769
SIO_000300: 1
SIO_000628: feature:9583427-9583626:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18599147..18599346
location: region:18599147-18599346:1
BFO_0000051: feature:18599147-18599346:1:region
SIO_000974: 0d3d7ea9-79d2-4c51-a796-9747d171f78d

position:18599147:1
position: 18599147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18599346:1
position: 18599346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0d3d7ea9-79d2-4c51-a796-9747d171f78d
SIO_000300: 1
SIO_000628: feature:18599147-18599346:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19786279..19786478
location: region:19786279-19786478:1
BFO_0000051: feature:19786279-19786478:1:region
SIO_000974: af4e19a1-2443-4f9b-b9a6-8b2e62d43593

position:19786279:1
position: 19786279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19786478:1
position: 19786478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af4e19a1-2443-4f9b-b9a6-8b2e62d43593
SIO_000300: 1
SIO_000628: feature:19786279-19786478:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29774933..29775132
location: region:29774933-29775132:1
BFO_0000051: feature:29774933-29775132:1:region
SIO_000974: a8c4d718-cdce-46ba-8a8d-3619c8e69e72

position:29774933:1
position: 29774933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29775132:1
position: 29775132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8c4d718-cdce-46ba-8a8d-3619c8e69e72
SIO_000300: 1
SIO_000628: feature:29774933-29775132:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31682839..31683038
location: region:31682839-31683038:1
BFO_0000051: feature:31682839-31683038:1:region
SIO_000974: cafb5c10-f240-4371-9650-ae3689275e86

position:31682839:1
position: 31682839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31683038:1
position: 31683038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cafb5c10-f240-4371-9650-ae3689275e86
SIO_000300: 1
SIO_000628: feature:31682839-31683038:1:region

Orthosia incerta genome assembly, chromosome: 10.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 10.
sequence version: OX411751.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 32477846
topology: linear
RO_0000086: SO_0000987
location: 1..32477846
location: region:1-32477846:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32477846:1
position: 32477846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32477846:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9727081..9727280
location: region:9727081-9727280:1
BFO_0000051: feature:9727081-9727280:1:region
SIO_000974: d303731e-54ba-4946-a42b-c506851eead0

position:9727081:1
position: 9727081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9727280:1
position: 9727280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d303731e-54ba-4946-a42b-c506851eead0
SIO_000300: 1
SIO_000628: feature:9727081-9727280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19560255..19560454
location: region:19560255-19560454:1
BFO_0000051: feature:19560255-19560454:1:region
SIO_000974: 64f49901-9c54-4ce2-bca1-5540599ec975

position:19560255:1
position: 19560255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19560454:1
position: 19560454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64f49901-9c54-4ce2-bca1-5540599ec975
SIO_000300: 1
SIO_000628: feature:19560255-19560454:1:region

Orthosia incerta genome assembly, chromosome: 11.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 11.
sequence version: OX411752.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 32315740
topology: linear
RO_0000086: SO_0000987
location: 1..32315740
location: region:1-32315740:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32315740:1
position: 32315740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32315740:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4436443..4436642
location: region:4436443-4436642:1
BFO_0000051: feature:4436443-4436642:1:region
SIO_000974: 6f40a335-26dc-4a45-93d3-f0758db4340e

position:4436443:1
position: 4436443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4436642:1
position: 4436642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6f40a335-26dc-4a45-93d3-f0758db4340e
SIO_000300: 1
SIO_000628: feature:4436443-4436642:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5564248..5564447
location: region:5564248-5564447:1
BFO_0000051: feature:5564248-5564447:1:region
SIO_000974: 0729ab23-c9a5-47f1-b182-e7330427b395

position:5564248:1
position: 5564248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5564447:1
position: 5564447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0729ab23-c9a5-47f1-b182-e7330427b395
SIO_000300: 1
SIO_000628: feature:5564248-5564447:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16645448..16645647
location: region:16645448-16645647:1
BFO_0000051: feature:16645448-16645647:1:region
SIO_000974: c8cbff78-9daa-4d64-ac08-743cfd59506c

position:16645448:1
position: 16645448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16645647:1
position: 16645647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8cbff78-9daa-4d64-ac08-743cfd59506c
SIO_000300: 1
SIO_000628: feature:16645448-16645647:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21508267..21508466
location: region:21508267-21508466:1
BFO_0000051: feature:21508267-21508466:1:region
SIO_000974: 9f359e39-137c-40c5-be14-0fd326a6f280

position:21508267:1
position: 21508267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21508466:1
position: 21508466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f359e39-137c-40c5-be14-0fd326a6f280
SIO_000300: 1
SIO_000628: feature:21508267-21508466:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21589483..21589682
location: region:21589483-21589682:1
BFO_0000051: feature:21589483-21589682:1:region
SIO_000974: db47e16a-a9aa-473f-b1f1-789ad909e6ec

position:21589483:1
position: 21589483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21589682:1
position: 21589682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db47e16a-a9aa-473f-b1f1-789ad909e6ec
SIO_000300: 1
SIO_000628: feature:21589483-21589682:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22383969..22384168
location: region:22383969-22384168:1
BFO_0000051: feature:22383969-22384168:1:region
SIO_000974: 675642a2-5640-443a-bed8-8acff9e9c4df

position:22383969:1
position: 22383969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22384168:1
position: 22384168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

675642a2-5640-443a-bed8-8acff9e9c4df
SIO_000300: 1
SIO_000628: feature:22383969-22384168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23415209..23415408
location: region:23415209-23415408:1
BFO_0000051: feature:23415209-23415408:1:region
SIO_000974: 410b30fd-f2bc-4145-a338-e37b7f6f3a55

position:23415209:1
position: 23415209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23415408:1
position: 23415408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:23415209-23415408:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25473741..25473940
location: region:25473741-25473940:1
BFO_0000051: feature:25473741-25473940:1:region
SIO_000974: d79f89ca-8e79-453f-aed2-5610c16d3cf8

position:25473741:1
position: 25473741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25473940:1
position: 25473940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d79f89ca-8e79-453f-aed2-5610c16d3cf8
SIO_000300: 1
SIO_000628: feature:25473741-25473940:1:region

Orthosia incerta genome assembly, chromosome: 12.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 12.
sequence version: OX411753.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 32262287
topology: linear
RO_0000086: SO_0000987
location: 1..32262287
location: region:1-32262287:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32262287:1
position: 32262287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32262287:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3410700..3410899
location: region:3410700-3410899:1
BFO_0000051: feature:3410700-3410899:1:region
SIO_000974: a86bd2ba-4fe6-4aee-9c07-3d99ab3df1e3

position:3410700:1
position: 3410700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3410899:1
position: 3410899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a86bd2ba-4fe6-4aee-9c07-3d99ab3df1e3
SIO_000300: 1
SIO_000628: feature:3410700-3410899:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4538900..4539099
location: region:4538900-4539099:1
BFO_0000051: feature:4538900-4539099:1:region
SIO_000974: 60447fad-4cb9-4235-9899-a0c50dbb83a3

position:4538900:1
position: 4538900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4539099:1
position: 4539099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60447fad-4cb9-4235-9899-a0c50dbb83a3
SIO_000300: 1
SIO_000628: feature:4538900-4539099:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11900100..11900299
location: region:11900100-11900299:1
BFO_0000051: feature:11900100-11900299:1:region
SIO_000974: 16f1bccc-23ba-4ea7-94b5-2ab59a80cfaf

position:11900100:1
position: 11900100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11900299:1
position: 11900299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16f1bccc-23ba-4ea7-94b5-2ab59a80cfaf
SIO_000300: 1
SIO_000628: feature:11900100-11900299:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30474300..30474499
location: region:30474300-30474499:1
BFO_0000051: feature:30474300-30474499:1:region
SIO_000974: eb15da2c-770d-4c0a-bb59-f8581d3b5150

position:30474300:1
position: 30474300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30474499:1
position: 30474499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb15da2c-770d-4c0a-bb59-f8581d3b5150
SIO_000300: 1
SIO_000628: feature:30474300-30474499:1:region

Orthosia incerta genome assembly, chromosome: 13.
type: Entry
definition: Orthosia incerta genome assembly, chromosome: 13.
sequence version: OX411754.1
sequence date: 2023-01-17
sequence: sequence
division: INV
source: Orthosia incerta
organism: Orthosia incerta
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Orthosia.
reference: 1
comment: The assembly ilOrtInce1.1 is based on 26x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. Z chromosome identified based on\nalignment with Orthosia gracilis (GCA_947562075.1; ilOrtGrac1_1).

sequence
subclass of: SO_0000001
sequence length: 32232069
topology: linear
RO_0000086: SO_0000987
location: 1..32232069
location: region:1-32232069:1
RO_0002162: 988011

1
journal: Submitted (14-JAN-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32232069:1
position: 32232069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32232069:1:source
BFO_0000050: sequence
organism: Orthosia incerta
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 478410..478609
location: region:478410-478609:1
BFO_0000051: feature:478410-478609:1:region
SIO_000974: 2270bb1b-2286-49a2-be2d-254ad119a9ec

position:478410:1
position: 478410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478609:1
position: 478609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2270bb1b-2286-49a2-be2d-254ad119a9ec
SIO_000300: 1
SIO_000628: feature:478410-478609:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7001813..7002012
location: region:7001813-7002012:1
BFO_0000051: feature:7001813-7002012:1:region
SIO_000974: 594adcb9-9b6e-4ee7-934c-f80ddbb2c054

position:7001813:1
position: 7001813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7002012:1
position: 7002012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

594adcb9-9b6e-4ee7-934c-f80ddbb2c054
SIO_000300: 1
SIO_000628: feature:7001813-7002012:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7989259..7989458
location: region:7989259-7989458:1
BFO_0000051: feature:7989259-7989458:1:region
SIO_000974: e2468857-a45a-4922-b9d6-82ddeac719a3

position:7989259:1
position: 7989259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7989458:1
position: 7989458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2468857-a45a-4922-b9d6-82ddeac719a3
SIO_000300: 1
SIO_000628: feature:7989259-7989458:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8564864..8565063
location: region:8564864-8565063:1
BFO_0000051: feature:8564864-8565063:1:region
SIO_000974: 5ccf9a0a-42ee-4013-afef-7a5c02330419

position:8564864:1
position: 8564864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8565063:1
position: 8565063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ccf9a0a-42ee-4013-afef-7a5c02330419
SIO_000300: 1
SIO_000628: feature:8564864-8565063:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988011
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13711870..13712069
location: region:13711870-13712069:1
BFO_0000051: feature:13711870-13712069:1:region
SIO_000974: 97f19849-383c-4c2b-b85b-f2e39c8908e1

position:13711870:1
position: 13711870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13712069:1
position: 13712069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97f19849-383c-4c2b-b85b-f2e39c8908e1
SIO_000300: 1
SIO_000628: feature:13711870-13712069:1:region