Hecatera dysodea genome assembly, chromosome: 24.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 24.
sequence version: HG995311.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16967127
topology: linear
RO_0000086: SO_0000987
location: 1..16967127
location: region:1-16967127:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16967127:1
position: 16967127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16967127:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 24
mol type: genomic DNA

988125
type: Taxonomy
SIO_000068: taxonomy

Hecatera dysodea genome assembly, chromosome: 25.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 25.
sequence version: HG995312.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15320587
topology: linear
RO_0000086: SO_0000987
location: 1..15320587
location: region:1-15320587:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15320587:1
position: 15320587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15320587:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14207580..14207779
location: region:14207580-14207779:1
BFO_0000051: feature:14207580-14207779:1:region
SIO_000974: 3611c262-88d7-4e81-8abe-6d87ee9913bf

position:14207580:1
position: 14207580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14207779:1
position: 14207779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3611c262-88d7-4e81-8abe-6d87ee9913bf
SIO_000300: 1
SIO_000628: feature:14207580-14207779:1:region

Hecatera dysodea genome assembly, chromosome: 26.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 26.
sequence version: HG995313.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14752506
topology: linear
RO_0000086: SO_0000987
location: 1..14752506
location: region:1-14752506:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14752506:1
position: 14752506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14752506:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1255208..1255707
location: region:1255208-1255707:1
BFO_0000051: feature:1255208-1255707:1:region
SIO_000974: 753cf18b-ed27-475b-bb9f-1415e5c6e44a

position:1255208:1
position: 1255208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1255707:1
position: 1255707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

753cf18b-ed27-475b-bb9f-1415e5c6e44a
SIO_000300: 1
SIO_000628: feature:1255208-1255707:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 12988056..12988555
location: region:12988056-12988555:1
BFO_0000051: feature:12988056-12988555:1:region
SIO_000974: 6d2809f9-34e8-4ba3-a1b8-b58b5e94f5be

position:12988056:1
position: 12988056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12988555:1
position: 12988555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d2809f9-34e8-4ba3-a1b8-b58b5e94f5be
SIO_000300: 1
SIO_000628: feature:12988056-12988555:1:region

Hecatera dysodea genome assembly, chromosome: 27.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 27.
sequence version: HG995314.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12111607
topology: linear
RO_0000086: SO_0000987
location: 1..12111607
location: region:1-12111607:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12111607:1
position: 12111607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12111607:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9447390..9447889
location: region:9447390-9447889:1
BFO_0000051: feature:9447390-9447889:1:region
SIO_000974: 1ac2cccc-e21d-48e0-acd4-de042a42e2b4

position:9447390:1
position: 9447390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9447889:1
position: 9447889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ac2cccc-e21d-48e0-acd4-de042a42e2b4
SIO_000300: 1
SIO_000628: feature:9447390-9447889:1:region

Hecatera dysodea genome assembly, chromosome: 28.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 28.
sequence version: HG995315.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11609116
topology: linear
RO_0000086: SO_0000987
location: 1..11609116
location: region:1-11609116:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11609116:1
position: 11609116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11609116:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6335673..6335872
location: region:6335673-6335872:1
BFO_0000051: feature:6335673-6335872:1:region
SIO_000974: 565411aa-fb06-4b11-911b-6e048ccb1955

position:6335673:1
position: 6335673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6335872:1
position: 6335872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

565411aa-fb06-4b11-911b-6e048ccb1955
SIO_000300: 1
SIO_000628: feature:6335673-6335872:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8028488..8028987
location: region:8028488-8028987:1
BFO_0000051: feature:8028488-8028987:1:region
SIO_000974: 4bcd6e3c-cb5d-4af5-be98-deb37dc23146

position:8028488:1
position: 8028488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8028987:1
position: 8028987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4bcd6e3c-cb5d-4af5-be98-deb37dc23146
SIO_000300: 1
SIO_000628: feature:8028488-8028987:1:region

Hecatera dysodea genome assembly, chromosome: 29.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 29.
sequence version: HG995316.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11449100
topology: linear
RO_0000086: SO_0000987
location: 1..11449100
location: region:1-11449100:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11449100:1
position: 11449100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11449100:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6155300..6155499
location: region:6155300-6155499:1
BFO_0000051: feature:6155300-6155499:1:region
SIO_000974: d5798689-3dfa-4c63-877c-4eba8bd8b318

position:6155300:1
position: 6155300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6155499:1
position: 6155499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d5798689-3dfa-4c63-877c-4eba8bd8b318
SIO_000300: 1
SIO_000628: feature:6155300-6155499:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6247754..6247953
location: region:6247754-6247953:1
BFO_0000051: feature:6247754-6247953:1:region
SIO_000974: 5876cad1-70bc-4858-aefa-d86eb33ad877

position:6247754:1
position: 6247754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6247953:1
position: 6247953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5876cad1-70bc-4858-aefa-d86eb33ad877
SIO_000300: 1
SIO_000628: feature:6247754-6247953:1:region

Hecatera dysodea genome assembly, chromosome: 30.
type: Entry
definition: Hecatera dysodea genome assembly, chromosome: 30.
sequence version: HG995317.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10607383
topology: linear
RO_0000086: SO_0000987
location: 1..10607383
location: region:1-10607383:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10607383:1
position: 10607383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10607383:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988125
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7768235..7768434
location: region:7768235-7768434:1
BFO_0000051: feature:7768235-7768434:1:region
SIO_000974: a547b4f9-07a8-4748-b281-6af23724d8d9

position:7768235:1
position: 7768235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7768434:1
position: 7768434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a547b4f9-07a8-4748-b281-6af23724d8d9
SIO_000300: 1
SIO_000628: feature:7768235-7768434:1:region

Hecatera dysodea genome assembly, organelle: mitochondrion.
type: Entry
definition: Hecatera dysodea genome assembly, organelle: mitochondrion.
sequence version: HG995318.2
sequence date: 2022-01-30
sequence: sequence
division: INV
source: mitochondrion Hecatera dysodea
organism: Hecatera dysodea
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera.
reference: 1
reference: 2
comment: The assembly ilHecDyso1.2 is based on 47x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15371
topology: linear
RO_0000086: SO_0000987
location: 1..15371
location: region:1-15371:1
RO_0002162: 988125

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15371:1
position: 15371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15371:1:source
BFO_0000050: sequence
organism: Hecatera dysodea
organelle: mitochondrion
mol type: genomic DNA

Lysandra bellargus genome assembly, chromosome: Z.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: Z.
sequence version: HG995319.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 29060993
topology: linear
RO_0000086: SO_0000987
location: 1..29060993
location: region:1-29060993:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29060993:1
position: 29060993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29060993:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: Z
mol type: genomic DNA

138070
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 13627198..13627697
location: region:13627198-13627697:1
BFO_0000051: feature:13627198-13627697:1:region
SIO_000974: b996d800-4cc6-4a97-8b6e-32553a5cf731

position:13627198:1
position: 13627198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13627697:1
position: 13627697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b996d800-4cc6-4a97-8b6e-32553a5cf731
SIO_000300: 1
SIO_000628: feature:13627198-13627697:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19453454..19453653
location: region:19453454-19453653:1
BFO_0000051: feature:19453454-19453653:1:region
SIO_000974: fb3b2daf-e615-47f4-af78-11a18f854603

position:19453454:1
position: 19453454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19453653:1
position: 19453653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fb3b2daf-e615-47f4-af78-11a18f854603
SIO_000300: 1
SIO_000628: feature:19453454-19453653:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21923445..21923644
location: region:21923445-21923644:1
BFO_0000051: feature:21923445-21923644:1:region
SIO_000974: 2c4d349a-a447-4fd4-922e-425b773cd701

position:21923445:1
position: 21923445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21923644:1
position: 21923644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c4d349a-a447-4fd4-922e-425b773cd701
SIO_000300: 1
SIO_000628: feature:21923445-21923644:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21962992..21963191
location: region:21962992-21963191:1
BFO_0000051: feature:21962992-21963191:1:region
SIO_000974: f8aefc0e-c1f0-45c6-a579-2557d3ef93a7

position:21962992:1
position: 21962992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21963191:1
position: 21963191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f8aefc0e-c1f0-45c6-a579-2557d3ef93a7
SIO_000300: 1
SIO_000628: feature:21962992-21963191:1:region

Lysandra bellargus genome assembly, chromosome: 1.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 1.
sequence version: HG995320.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 18029887
topology: linear
RO_0000086: SO_0000987
location: 1..18029887
location: region:1-18029887:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18029887:1
position: 18029887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18029887:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7667020..7667519
location: region:7667020-7667519:1
BFO_0000051: feature:7667020-7667519:1:region
SIO_000974: 878ccffa-6aa8-4f9a-805c-8a066b0457da

position:7667020:1
position: 7667020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7667519:1
position: 7667519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

878ccffa-6aa8-4f9a-805c-8a066b0457da
SIO_000300: 1
SIO_000628: feature:7667020-7667519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11702129..11702328
location: region:11702129-11702328:1
BFO_0000051: feature:11702129-11702328:1:region
SIO_000974: be811498-fa25-4fb0-9e3f-fe8add4ba855

position:11702129:1
position: 11702129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11702328:1
position: 11702328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be811498-fa25-4fb0-9e3f-fe8add4ba855
SIO_000300: 1
SIO_000628: feature:11702129-11702328:1:region

Lysandra bellargus genome assembly, chromosome: 2.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 2.
sequence version: HG995321.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16109934
topology: linear
RO_0000086: SO_0000987
location: 1..16109934
location: region:1-16109934:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16109934:1
position: 16109934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16109934:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3629731..3630230
location: region:3629731-3630230:1
BFO_0000051: feature:3629731-3630230:1:region
SIO_000974: 1514f465-2114-422c-8770-10d408d0edb8

position:3629731:1
position: 3629731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3630230:1
position: 3630230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1514f465-2114-422c-8770-10d408d0edb8
SIO_000300: 1
SIO_000628: feature:3629731-3630230:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5703671..5703870
location: region:5703671-5703870:1
BFO_0000051: feature:5703671-5703870:1:region
SIO_000974: 49b4c2b0-8ee7-4568-9e07-0a8dce809e33

position:5703671:1
position: 5703671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5703870:1
position: 5703870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

49b4c2b0-8ee7-4568-9e07-0a8dce809e33
SIO_000300: 1
SIO_000628: feature:5703671-5703870:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6006855..6007354
location: region:6006855-6007354:1
BFO_0000051: feature:6006855-6007354:1:region
SIO_000974: 2400fc3a-932d-41ed-b35c-4336ac5c3c36

position:6006855:1
position: 6006855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6007354:1
position: 6007354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2400fc3a-932d-41ed-b35c-4336ac5c3c36
SIO_000300: 1
SIO_000628: feature:6006855-6007354:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6040252..6040451
location: region:6040252-6040451:1
BFO_0000051: feature:6040252-6040451:1:region
SIO_000974: e2b33435-351d-4442-9cc1-76cf59aa6b58

position:6040252:1
position: 6040252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6040451:1
position: 6040451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2b33435-351d-4442-9cc1-76cf59aa6b58
SIO_000300: 1
SIO_000628: feature:6040252-6040451:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10348524..10348723
location: region:10348524-10348723:1
BFO_0000051: feature:10348524-10348723:1:region
SIO_000974: 5518f0eb-39ae-4dca-bc2c-a50d8ba1ad4b

position:10348524:1
position: 10348524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10348723:1
position: 10348723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5518f0eb-39ae-4dca-bc2c-a50d8ba1ad4b
SIO_000300: 1
SIO_000628: feature:10348524-10348723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 12380168..12380667
location: region:12380168-12380667:1
BFO_0000051: feature:12380168-12380667:1:region
SIO_000974: 31ba7b20-d428-4afa-9264-ef2a5deb2220

position:12380168:1
position: 12380168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12380667:1
position: 12380667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31ba7b20-d428-4afa-9264-ef2a5deb2220
SIO_000300: 1
SIO_000628: feature:12380168-12380667:1:region

Lysandra bellargus genome assembly, chromosome: 3.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 3.
sequence version: HG995322.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16004545
topology: linear
RO_0000086: SO_0000987
location: 1..16004545
location: region:1-16004545:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16004545:1
position: 16004545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16004545:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3246801..3247300
location: region:3246801-3247300:1
BFO_0000051: feature:3246801-3247300:1:region
SIO_000974: a8048db8-1f6d-4577-b034-c2a4c76e85eb

position:3246801:1
position: 3246801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3247300:1
position: 3247300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8048db8-1f6d-4577-b034-c2a4c76e85eb
SIO_000300: 1
SIO_000628: feature:3246801-3247300:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5248743..5248942
location: region:5248743-5248942:1
BFO_0000051: feature:5248743-5248942:1:region
SIO_000974: aac2546b-889c-4e49-bbcd-cbd5a3ddbef0

position:5248743:1
position: 5248743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5248942:1
position: 5248942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aac2546b-889c-4e49-bbcd-cbd5a3ddbef0
SIO_000300: 1
SIO_000628: feature:5248743-5248942:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5279723..5279922
location: region:5279723-5279922:1
BFO_0000051: feature:5279723-5279922:1:region
SIO_000974: 4dee0bb5-143e-45a3-b727-7075dc86d1d5

position:5279723:1
position: 5279723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5279922:1
position: 5279922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4dee0bb5-143e-45a3-b727-7075dc86d1d5
SIO_000300: 1
SIO_000628: feature:5279723-5279922:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9483347..9483846
location: region:9483347-9483846:1
BFO_0000051: feature:9483347-9483846:1:region
SIO_000974: 2bd8b347-9566-4df1-a707-7665f1f45dc9

position:9483347:1
position: 9483347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9483846:1
position: 9483846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2bd8b347-9566-4df1-a707-7665f1f45dc9
SIO_000300: 1
SIO_000628: feature:9483347-9483846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 100
gap type: unknown
BFO_0000050: sequence
location: 13122755..13122854
location: region:13122755-13122854:1
BFO_0000051: feature:13122755-13122854:1:region
SIO_000974: 25fcb6f6-1d98-4de8-ab71-a9dc31febd86

position:13122755:1
position: 13122755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13122854:1
position: 13122854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

25fcb6f6-1d98-4de8-ab71-a9dc31febd86
SIO_000300: 1
SIO_000628: feature:13122755-13122854:1:region

Lysandra bellargus genome assembly, chromosome: 4.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 4.
sequence version: HG995323.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14915325
topology: linear
RO_0000086: SO_0000987
location: 1..14915325
location: region:1-14915325:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14915325:1
position: 14915325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14915325:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3280435..3280634
location: region:3280435-3280634:1
BFO_0000051: feature:3280435-3280634:1:region
SIO_000974: a72b3c73-93c5-47be-8369-693ba81bc2d0

position:3280435:1
position: 3280435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3280634:1
position: 3280634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a72b3c73-93c5-47be-8369-693ba81bc2d0
SIO_000300: 1
SIO_000628: feature:3280435-3280634:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4934842..4935341
location: region:4934842-4935341:1
BFO_0000051: feature:4934842-4935341:1:region
SIO_000974: ea6a27ac-2fd6-49b1-922f-053ed3105330

position:4934842:1
position: 4934842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4935341:1
position: 4935341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ea6a27ac-2fd6-49b1-922f-053ed3105330
SIO_000300: 1
SIO_000628: feature:4934842-4935341:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8998990..8999189
location: region:8998990-8999189:1
BFO_0000051: feature:8998990-8999189:1:region
SIO_000974: 4694a831-3025-4b50-9786-0b27840e3bab

position:8998990:1
position: 8998990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8999189:1
position: 8999189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4694a831-3025-4b50-9786-0b27840e3bab
SIO_000300: 1
SIO_000628: feature:8998990-8999189:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10263937..10264136
location: region:10263937-10264136:1
BFO_0000051: feature:10263937-10264136:1:region
SIO_000974: e6a3e7ee-1d68-49f9-bf53-bdb860680532

position:10263937:1
position: 10263937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10264136:1
position: 10264136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6a3e7ee-1d68-49f9-bf53-bdb860680532
SIO_000300: 1
SIO_000628: feature:10263937-10264136:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11602767..11603266
location: region:11602767-11603266:1
BFO_0000051: feature:11602767-11603266:1:region
SIO_000974: 98a03107-931a-494e-9541-0a87b90319d1

position:11602767:1
position: 11602767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11603266:1
position: 11603266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

98a03107-931a-494e-9541-0a87b90319d1
SIO_000300: 1
SIO_000628: feature:11602767-11603266:1:region

Lysandra bellargus genome assembly, chromosome: 5.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 5.
sequence version: HG995324.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14156876
topology: linear
RO_0000086: SO_0000987
location: 1..14156876
location: region:1-14156876:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14156876:1
position: 14156876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14156876:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4034876..4035075
location: region:4034876-4035075:1
BFO_0000051: feature:4034876-4035075:1:region
SIO_000974: dbe15c4f-a7e0-4bb3-bd00-6f27b7e65696

position:4034876:1
position: 4034876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4035075:1
position: 4035075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dbe15c4f-a7e0-4bb3-bd00-6f27b7e65696
SIO_000300: 1
SIO_000628: feature:4034876-4035075:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4537805..4538004
location: region:4537805-4538004:1
BFO_0000051: feature:4537805-4538004:1:region
SIO_000974: 292ddcba-a88a-4537-bda4-0452c7529e67

position:4537805:1
position: 4537805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4538004:1
position: 4538004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

292ddcba-a88a-4537-bda4-0452c7529e67
SIO_000300: 1
SIO_000628: feature:4537805-4538004:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7856922..7857421
location: region:7856922-7857421:1
BFO_0000051: feature:7856922-7857421:1:region
SIO_000974: 0966b6c4-e083-4ca7-a0d2-e58fecd84703

position:7856922:1
position: 7856922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7857421:1
position: 7857421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0966b6c4-e083-4ca7-a0d2-e58fecd84703
SIO_000300: 1
SIO_000628: feature:7856922-7857421:1:region

Lysandra bellargus genome assembly, chromosome: 6.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 6.
sequence version: HG995325.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13289862
topology: linear
RO_0000086: SO_0000987
location: 1..13289862
location: region:1-13289862:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13289862:1
position: 13289862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13289862:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5279878..5280077
location: region:5279878-5280077:1
BFO_0000051: feature:5279878-5280077:1:region
SIO_000974: f9eea1dd-3420-48e8-a2a8-e4667c9c40cb

position:5279878:1
position: 5279878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5280077:1
position: 5280077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9eea1dd-3420-48e8-a2a8-e4667c9c40cb
SIO_000300: 1
SIO_000628: feature:5279878-5280077:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5372353..5372552
location: region:5372353-5372552:1
BFO_0000051: feature:5372353-5372552:1:region
SIO_000974: 765ec2f0-a438-43b6-bee1-acd76a578434

position:5372353:1
position: 5372353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5372552:1
position: 5372552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

765ec2f0-a438-43b6-bee1-acd76a578434
SIO_000300: 1
SIO_000628: feature:5372353-5372552:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8453683..8453882
location: region:8453683-8453882:1
BFO_0000051: feature:8453683-8453882:1:region
SIO_000974: d084dfc3-f75a-4c7f-b776-c383f8aed711

position:8453683:1
position: 8453683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8453882:1
position: 8453882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d084dfc3-f75a-4c7f-b776-c383f8aed711
SIO_000300: 1
SIO_000628: feature:8453683-8453882:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10526361..10526860
location: region:10526361-10526860:1
BFO_0000051: feature:10526361-10526860:1:region
SIO_000974: 51cf2bfb-948e-4b3f-b7b6-5fe456ae1ff5

position:10526361:1
position: 10526361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10526860:1
position: 10526860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51cf2bfb-948e-4b3f-b7b6-5fe456ae1ff5
SIO_000300: 1
SIO_000628: feature:10526361-10526860:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 11307162..11307661
location: region:11307162-11307661:1
BFO_0000051: feature:11307162-11307661:1:region
SIO_000974: 2dd51d4e-2f9e-48d7-95bd-3e993751262f

position:11307162:1
position: 11307162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11307661:1
position: 11307661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dd51d4e-2f9e-48d7-95bd-3e993751262f
SIO_000300: 1
SIO_000628: feature:11307162-11307661:1:region

Lysandra bellargus genome assembly, chromosome: 7.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 7.
sequence version: HG995326.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13028540
topology: linear
RO_0000086: SO_0000987
location: 1..13028540
location: region:1-13028540:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13028540:1
position: 13028540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13028540:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7053964..7054463
location: region:7053964-7054463:1
BFO_0000051: feature:7053964-7054463:1:region
SIO_000974: 9339750f-e88d-4310-bdbb-a7c4dd69ac17

position:7053964:1
position: 7053964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7054463:1
position: 7054463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9339750f-e88d-4310-bdbb-a7c4dd69ac17
SIO_000300: 1
SIO_000628: feature:7053964-7054463:1:region

Lysandra bellargus genome assembly, chromosome: 8.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 8.
sequence version: HG995327.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12892625
topology: linear
RO_0000086: SO_0000987
location: 1..12892625
location: region:1-12892625:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12892625:1
position: 12892625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12892625:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3473764..3473963
location: region:3473764-3473963:1
BFO_0000051: feature:3473764-3473963:1:region
SIO_000974: f98dc8d4-eabb-4302-a9a5-dc55f72ce7a2

position:3473764:1
position: 3473764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3473963:1
position: 3473963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f98dc8d4-eabb-4302-a9a5-dc55f72ce7a2
SIO_000300: 1
SIO_000628: feature:3473764-3473963:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4845125..4845324
location: region:4845125-4845324:1
BFO_0000051: feature:4845125-4845324:1:region
SIO_000974: c7ef191b-a9d1-4490-a32e-ae4872830d5d

position:4845125:1
position: 4845125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4845324:1
position: 4845324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c7ef191b-a9d1-4490-a32e-ae4872830d5d
SIO_000300: 1
SIO_000628: feature:4845125-4845324:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8671890..8672389
location: region:8671890-8672389:1
BFO_0000051: feature:8671890-8672389:1:region
SIO_000974: 40de501b-c45d-43a8-8507-ac5cc96bcb1c

position:8671890:1
position: 8671890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8672389:1
position: 8672389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40de501b-c45d-43a8-8507-ac5cc96bcb1c
SIO_000300: 1
SIO_000628: feature:8671890-8672389:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10702527..10703026
location: region:10702527-10703026:1
BFO_0000051: feature:10702527-10703026:1:region
SIO_000974: bacd7a98-f6f5-4e87-abe1-7193721c503e

position:10702527:1
position: 10702527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10703026:1
position: 10703026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bacd7a98-f6f5-4e87-abe1-7193721c503e
SIO_000300: 1
SIO_000628: feature:10702527-10703026:1:region

Lysandra bellargus genome assembly, chromosome: 9.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 9.
sequence version: HG995328.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12686379
topology: linear
RO_0000086: SO_0000987
location: 1..12686379
location: region:1-12686379:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12686379:1
position: 12686379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12686379:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5060792..5060991
location: region:5060792-5060991:1
BFO_0000051: feature:5060792-5060991:1:region
SIO_000974: 510cc097-71df-47d5-bec9-c97a9ae70a2e

position:5060792:1
position: 5060792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5060991:1
position: 5060991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

510cc097-71df-47d5-bec9-c97a9ae70a2e
SIO_000300: 1
SIO_000628: feature:5060792-5060991:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7114021..7114220
location: region:7114021-7114220:1
BFO_0000051: feature:7114021-7114220:1:region
SIO_000974: f456463a-73e8-4ce0-9344-8b372e87d103

position:7114021:1
position: 7114021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7114220:1
position: 7114220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f456463a-73e8-4ce0-9344-8b372e87d103
SIO_000300: 1
SIO_000628: feature:7114021-7114220:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7847841..7848040
location: region:7847841-7848040:1
BFO_0000051: feature:7847841-7848040:1:region
SIO_000974: 9e6a2f6b-c667-4b8d-bb46-8c27e8948ff8

position:7847841:1
position: 7847841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7848040:1
position: 7848040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9e6a2f6b-c667-4b8d-bb46-8c27e8948ff8
SIO_000300: 1
SIO_000628: feature:7847841-7848040:1:region

Lysandra bellargus genome assembly, chromosome: 10.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 10.
sequence version: HG995329.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12631868
topology: linear
RO_0000086: SO_0000987
location: 1..12631868
location: region:1-12631868:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12631868:1
position: 12631868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12631868:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2952141..2952340
location: region:2952141-2952340:1
BFO_0000051: feature:2952141-2952340:1:region
SIO_000974: 21f5c1fa-66d9-486a-889b-22cf3fb64223

position:2952141:1
position: 2952141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2952340:1
position: 2952340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21f5c1fa-66d9-486a-889b-22cf3fb64223
SIO_000300: 1
SIO_000628: feature:2952141-2952340:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4235776..4235975
location: region:4235776-4235975:1
BFO_0000051: feature:4235776-4235975:1:region
SIO_000974: 7be19d44-f3a6-4e61-a915-a208dc5c00e8

position:4235776:1
position: 4235776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4235975:1
position: 4235975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7be19d44-f3a6-4e61-a915-a208dc5c00e8
SIO_000300: 1
SIO_000628: feature:4235776-4235975:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4367476..4367675
location: region:4367476-4367675:1
BFO_0000051: feature:4367476-4367675:1:region
SIO_000974: cd6a5b3e-d372-4aa0-a1bd-d36c2a9b8d19

position:4367476:1
position: 4367476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4367675:1
position: 4367675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cd6a5b3e-d372-4aa0-a1bd-d36c2a9b8d19
SIO_000300: 1
SIO_000628: feature:4367476-4367675:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5228439..5228638
location: region:5228439-5228638:1
BFO_0000051: feature:5228439-5228638:1:region
SIO_000974: 6a0a3f77-7505-4445-996c-e72c1940c1d4

position:5228439:1
position: 5228439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5228638:1
position: 5228638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6a0a3f77-7505-4445-996c-e72c1940c1d4
SIO_000300: 1
SIO_000628: feature:5228439-5228638:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8010906..8011105
location: region:8010906-8011105:1
BFO_0000051: feature:8010906-8011105:1:region
SIO_000974: d214cfc8-f1c3-4723-917d-6088b7078388

position:8010906:1
position: 8010906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8011105:1
position: 8011105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d214cfc8-f1c3-4723-917d-6088b7078388
SIO_000300: 1
SIO_000628: feature:8010906-8011105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8172041..8172240
location: region:8172041-8172240:1
BFO_0000051: feature:8172041-8172240:1:region
SIO_000974: 2b495870-8bb2-4308-8213-0284471c97c3

position:8172041:1
position: 8172041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8172240:1
position: 8172240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b495870-8bb2-4308-8213-0284471c97c3
SIO_000300: 1
SIO_000628: feature:8172041-8172240:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10065434..10065933
location: region:10065434-10065933:1
BFO_0000051: feature:10065434-10065933:1:region
SIO_000974: eca94f42-4d3a-4f2a-819b-4c9e025e8110

position:10065434:1
position: 10065434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10065933:1
position: 10065933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eca94f42-4d3a-4f2a-819b-4c9e025e8110
SIO_000300: 1
SIO_000628: feature:10065434-10065933:1:region

Lysandra bellargus genome assembly, chromosome: 11.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 11.
sequence version: HG995330.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12363467
topology: linear
RO_0000086: SO_0000987
location: 1..12363467
location: region:1-12363467:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12363467:1
position: 12363467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12363467:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3413313..3413512
location: region:3413313-3413512:1
BFO_0000051: feature:3413313-3413512:1:region
SIO_000974: 045ad8b2-b5fe-461a-b8e1-8cfa8b2ef3ac

position:3413313:1
position: 3413313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3413512:1
position: 3413512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

045ad8b2-b5fe-461a-b8e1-8cfa8b2ef3ac
SIO_000300: 1
SIO_000628: feature:3413313-3413512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3930755..3930954
location: region:3930755-3930954:1
BFO_0000051: feature:3930755-3930954:1:region
SIO_000974: 3bb0c29d-bbf3-471d-81f5-6fe6a994bb78

position:3930755:1
position: 3930755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3930954:1
position: 3930954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3bb0c29d-bbf3-471d-81f5-6fe6a994bb78
SIO_000300: 1
SIO_000628: feature:3930755-3930954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5058001..5058200
location: region:5058001-5058200:1
BFO_0000051: feature:5058001-5058200:1:region
SIO_000974: 45faa188-2df8-4f68-b216-41db3ef2d0b3

position:5058001:1
position: 5058001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5058200:1
position: 5058200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45faa188-2df8-4f68-b216-41db3ef2d0b3
SIO_000300: 1
SIO_000628: feature:5058001-5058200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5239167..5239366
location: region:5239167-5239366:1
BFO_0000051: feature:5239167-5239366:1:region
SIO_000974: b0fc4473-9961-49a1-a23a-1a518dbe781f

position:5239167:1
position: 5239167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5239366:1
position: 5239366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b0fc4473-9961-49a1-a23a-1a518dbe781f
SIO_000300: 1
SIO_000628: feature:5239167-5239366:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7274324..7274523
location: region:7274324-7274523:1
BFO_0000051: feature:7274324-7274523:1:region
SIO_000974: 63bf354c-b30c-4394-82b9-0076943513f7

position:7274324:1
position: 7274324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7274523:1
position: 7274523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

63bf354c-b30c-4394-82b9-0076943513f7
SIO_000300: 1
SIO_000628: feature:7274324-7274523:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8543505..8543704
location: region:8543505-8543704:1
BFO_0000051: feature:8543505-8543704:1:region
SIO_000974: 626cb242-2b45-430f-aef6-dd5b5d52532b

position:8543505:1
position: 8543505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8543704:1
position: 8543704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

626cb242-2b45-430f-aef6-dd5b5d52532b
SIO_000300: 1
SIO_000628: feature:8543505-8543704:1:region

Lysandra bellargus genome assembly, chromosome: 12.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 12.
sequence version: HG995331.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12192638
topology: linear
RO_0000086: SO_0000987
location: 1..12192638
location: region:1-12192638:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12192638:1
position: 12192638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12192638:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2767763..2767962
location: region:2767763-2767962:1
BFO_0000051: feature:2767763-2767962:1:region
SIO_000974: 88e01c08-363b-4493-bbbc-ce871db740cc

position:2767763:1
position: 2767763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767962:1
position: 2767962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

88e01c08-363b-4493-bbbc-ce871db740cc
SIO_000300: 1
SIO_000628: feature:2767763-2767962:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4978671..4978870
location: region:4978671-4978870:1
BFO_0000051: feature:4978671-4978870:1:region
SIO_000974: dae37a9f-2f60-41a6-a6ae-a93c3a7e00ec

position:4978671:1
position: 4978671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4978870:1
position: 4978870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dae37a9f-2f60-41a6-a6ae-a93c3a7e00ec
SIO_000300: 1
SIO_000628: feature:4978671-4978870:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5646739..5646938
location: region:5646739-5646938:1
BFO_0000051: feature:5646739-5646938:1:region
SIO_000974: e6048c87-4777-4b13-b45a-09a4b4b5bad1

position:5646739:1
position: 5646739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5646938:1
position: 5646938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6048c87-4777-4b13-b45a-09a4b4b5bad1
SIO_000300: 1
SIO_000628: feature:5646739-5646938:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7805823..7806022
location: region:7805823-7806022:1
BFO_0000051: feature:7805823-7806022:1:region
SIO_000974: 80318d7c-6bff-42fc-b9e8-a0b360a6e14f

position:7805823:1
position: 7805823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7806022:1
position: 7806022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

80318d7c-6bff-42fc-b9e8-a0b360a6e14f
SIO_000300: 1
SIO_000628: feature:7805823-7806022:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7857967..7858166
location: region:7857967-7858166:1
BFO_0000051: feature:7857967-7858166:1:region
SIO_000974: bff54759-aa9b-4cf7-a03d-787957cfebdc

position:7857967:1
position: 7857967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7858166:1
position: 7858166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bff54759-aa9b-4cf7-a03d-787957cfebdc
SIO_000300: 1
SIO_000628: feature:7857967-7858166:1:region

Lysandra bellargus genome assembly, chromosome: 13.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 13.
sequence version: HG995332.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12191319
topology: linear
RO_0000086: SO_0000987
location: 1..12191319
location: region:1-12191319:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12191319:1
position: 12191319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12191319:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3026553..3026752
location: region:3026553-3026752:1
BFO_0000051: feature:3026553-3026752:1:region
SIO_000974: fb667729-0afe-4fc0-a99d-88bbb133044d

position:3026553:1
position: 3026553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3026752:1
position: 3026752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fb667729-0afe-4fc0-a99d-88bbb133044d
SIO_000300: 1
SIO_000628: feature:3026553-3026752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4193760..4193959
location: region:4193760-4193959:1
BFO_0000051: feature:4193760-4193959:1:region
SIO_000974: f1322f7f-92bb-4a68-8219-19a4a38732ce

position:4193760:1
position: 4193760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4193959:1
position: 4193959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1322f7f-92bb-4a68-8219-19a4a38732ce
SIO_000300: 1
SIO_000628: feature:4193760-4193959:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5259885..5260084
location: region:5259885-5260084:1
BFO_0000051: feature:5259885-5260084:1:region
SIO_000974: fd3ea181-61b2-4621-8c42-ab2c88bfc710

position:5259885:1
position: 5259885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5260084:1
position: 5260084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fd3ea181-61b2-4621-8c42-ab2c88bfc710
SIO_000300: 1
SIO_000628: feature:5259885-5260084:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5948840..5949039
location: region:5948840-5949039:1
BFO_0000051: feature:5948840-5949039:1:region
SIO_000974: 060832d7-7d13-4edf-b281-ef680d7963ad

position:5948840:1
position: 5948840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5949039:1
position: 5949039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

060832d7-7d13-4edf-b281-ef680d7963ad
SIO_000300: 1
SIO_000628: feature:5948840-5949039:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7776262..7776461
location: region:7776262-7776461:1
BFO_0000051: feature:7776262-7776461:1:region
SIO_000974: bd6b9177-0b98-4be1-9307-dafeaef10f9d

position:7776262:1
position: 7776262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7776461:1
position: 7776461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd6b9177-0b98-4be1-9307-dafeaef10f9d
SIO_000300: 1
SIO_000628: feature:7776262-7776461:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8546861..8547060
location: region:8546861-8547060:1
BFO_0000051: feature:8546861-8547060:1:region
SIO_000974: 1bad53cc-ffab-4e42-baed-1c3f2b8d81dc

position:8546861:1
position: 8546861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8547060:1
position: 8547060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1bad53cc-ffab-4e42-baed-1c3f2b8d81dc
SIO_000300: 1
SIO_000628: feature:8546861-8547060:1:region

Lysandra bellargus genome assembly, chromosome: 14.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 14.
sequence version: HG995333.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12138979
topology: linear
RO_0000086: SO_0000987
location: 1..12138979
location: region:1-12138979:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12138979:1
position: 12138979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12138979:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1830956..1831155
location: region:1830956-1831155:1
BFO_0000051: feature:1830956-1831155:1:region
SIO_000974: 37506203-2f71-4caf-90cf-21046f3d1eeb

position:1830956:1
position: 1830956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1831155:1
position: 1831155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37506203-2f71-4caf-90cf-21046f3d1eeb
SIO_000300: 1
SIO_000628: feature:1830956-1831155:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2383008..2383507
location: region:2383008-2383507:1
BFO_0000051: feature:2383008-2383507:1:region
SIO_000974: 67ef08d9-ef4c-4eab-9527-9ad95ab8311d

position:2383008:1
position: 2383008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2383507:1
position: 2383507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2383008-2383507:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3417972..3418471
location: region:3417972-3418471:1
BFO_0000051: feature:3417972-3418471:1:region
SIO_000974: 645a68d4-3f7b-45ab-af9d-2e811aac70ae

position:3417972:1
position: 3417972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3418471:1
position: 3418471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

645a68d4-3f7b-45ab-af9d-2e811aac70ae
SIO_000300: 1
SIO_000628: feature:3417972-3418471:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4957520..4957719
location: region:4957520-4957719:1
BFO_0000051: feature:4957520-4957719:1:region
SIO_000974: d973c72e-fe6d-4d5b-9aa3-266073a8b14a

position:4957520:1
position: 4957520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4957719:1
position: 4957719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d973c72e-fe6d-4d5b-9aa3-266073a8b14a
SIO_000300: 1
SIO_000628: feature:4957520-4957719:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6558822..6559021
location: region:6558822-6559021:1
BFO_0000051: feature:6558822-6559021:1:region
SIO_000974: 649c87e9-b2d4-452b-b9e1-282d7b983b07

position:6558822:1
position: 6558822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6559021:1
position: 6559021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6558822-6559021:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7407441..7407940
location: region:7407441-7407940:1
BFO_0000051: feature:7407441-7407940:1:region
SIO_000974: 1338a78f-530c-4d10-82f7-7409688a2d98

position:7407441:1
position: 7407441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7407940:1
position: 7407940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1338a78f-530c-4d10-82f7-7409688a2d98
SIO_000300: 1
SIO_000628: feature:7407441-7407940:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10338776..10338975
location: region:10338776-10338975:1
BFO_0000051: feature:10338776-10338975:1:region
SIO_000974: 4a54a2e9-90e8-4a6f-8e0a-343b8a298f09

position:10338776:1
position: 10338776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10338975:1
position: 10338975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10338776-10338975:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10485968..10486167
location: region:10485968-10486167:1
BFO_0000051: feature:10485968-10486167:1:region
SIO_000974: 7346730d-9fb6-4ccf-b7fc-208b7958283b

position:10485968:1
position: 10485968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10486167:1
position: 10486167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10485968-10486167:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12021357..12021556
location: region:12021357-12021556:1
BFO_0000051: feature:12021357-12021556:1:region
SIO_000974: e86897f5-32cc-48f7-8c93-1dda6a2e9bde

position:12021357:1
position: 12021357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12021556:1
position: 12021556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e86897f5-32cc-48f7-8c93-1dda6a2e9bde
SIO_000300: 1
SIO_000628: feature:12021357-12021556:1:region

Lysandra bellargus genome assembly, chromosome: 15.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 15.
sequence version: HG995334.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 12013695
topology: linear
RO_0000086: SO_0000987
location: 1..12013695
location: region:1-12013695:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12013695:1
position: 12013695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12013695:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4288706..4288905
location: region:4288706-4288905:1
BFO_0000051: feature:4288706-4288905:1:region
SIO_000974: e9c3b938-713b-48fd-8453-554cbf86c247

position:4288706:1
position: 4288706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4288905:1
position: 4288905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9c3b938-713b-48fd-8453-554cbf86c247
SIO_000300: 1
SIO_000628: feature:4288706-4288905:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5647458..5647657
location: region:5647458-5647657:1
BFO_0000051: feature:5647458-5647657:1:region
SIO_000974: 93df063d-cef3-4a5c-8074-c186e059cbf8

position:5647458:1
position: 5647458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5647657:1
position: 5647657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5647458-5647657:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6521810..6522009
location: region:6521810-6522009:1
BFO_0000051: feature:6521810-6522009:1:region
SIO_000974: ee925f1b-eb97-4431-bcbb-57771d906f3d

position:6521810:1
position: 6521810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6522009:1
position: 6522009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ee925f1b-eb97-4431-bcbb-57771d906f3d
SIO_000300: 1
SIO_000628: feature:6521810-6522009:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8328265..8328464
location: region:8328265-8328464:1
BFO_0000051: feature:8328265-8328464:1:region
SIO_000974: 765d75c1-9427-415e-b68f-f746b8c892ab

position:8328265:1
position: 8328265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8328464:1
position: 8328464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

765d75c1-9427-415e-b68f-f746b8c892ab
SIO_000300: 1
SIO_000628: feature:8328265-8328464:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10373507..10373706
location: region:10373507-10373706:1
BFO_0000051: feature:10373507-10373706:1:region
SIO_000974: 00b12ff2-2595-4d92-b1ab-2e74403667ce

position:10373507:1
position: 10373507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10373706:1
position: 10373706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00b12ff2-2595-4d92-b1ab-2e74403667ce
SIO_000300: 1
SIO_000628: feature:10373507-10373706:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10630347..10630546
location: region:10630347-10630546:1
BFO_0000051: feature:10630347-10630546:1:region
SIO_000974: c4b84d4b-f185-46f9-8771-91baac65ade6

position:10630347:1
position: 10630347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10630546:1
position: 10630546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4b84d4b-f185-46f9-8771-91baac65ade6
SIO_000300: 1
SIO_000628: feature:10630347-10630546:1:region

Lysandra bellargus genome assembly, chromosome: 16.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 16.
sequence version: HG995335.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11659535
topology: linear
RO_0000086: SO_0000987
location: 1..11659535
location: region:1-11659535:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11659535:1
position: 11659535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11659535:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 16
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2170617..2171116
location: region:2170617-2171116:1
BFO_0000051: feature:2170617-2171116:1:region
SIO_000974: 59679eae-72f6-422e-b0fe-3404e2cdc15f

position:2170617:1
position: 2170617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2171116:1
position: 2171116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59679eae-72f6-422e-b0fe-3404e2cdc15f
SIO_000300: 1
SIO_000628: feature:2170617-2171116:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2770374..2770873
location: region:2770374-2770873:1
BFO_0000051: feature:2770374-2770873:1:region
SIO_000974: c5bb9fc9-2004-472c-81b7-29ce21cd648b

position:2770374:1
position: 2770374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2770873:1
position: 2770873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5bb9fc9-2004-472c-81b7-29ce21cd648b
SIO_000300: 1
SIO_000628: feature:2770374-2770873:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3506714..3506913
location: region:3506714-3506913:1
BFO_0000051: feature:3506714-3506913:1:region
SIO_000974: 6aa54509-1775-4644-89dd-b70165b0f060

position:3506714:1
position: 3506714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3506913:1
position: 3506913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6aa54509-1775-4644-89dd-b70165b0f060
SIO_000300: 1
SIO_000628: feature:3506714-3506913:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3580218..3580417
location: region:3580218-3580417:1
BFO_0000051: feature:3580218-3580417:1:region
SIO_000974: 90c1e498-4f26-4916-9f41-8abe1bf40958

position:3580218:1
position: 3580218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3580417:1
position: 3580417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

90c1e498-4f26-4916-9f41-8abe1bf40958
SIO_000300: 1
SIO_000628: feature:3580218-3580417:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4207003..4207202
location: region:4207003-4207202:1
BFO_0000051: feature:4207003-4207202:1:region
SIO_000974: 2e503f31-89b2-4334-a131-8fb6eb85510d

position:4207003:1
position: 4207003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4207202:1
position: 4207202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e503f31-89b2-4334-a131-8fb6eb85510d
SIO_000300: 1
SIO_000628: feature:4207003-4207202:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5132064..5132563
location: region:5132064-5132563:1
BFO_0000051: feature:5132064-5132563:1:region
SIO_000974: 82c94619-538d-4f58-ad42-34b23bae21bc

position:5132064:1
position: 5132064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5132563:1
position: 5132563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82c94619-538d-4f58-ad42-34b23bae21bc
SIO_000300: 1
SIO_000628: feature:5132064-5132563:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6040890..6041089
location: region:6040890-6041089:1
BFO_0000051: feature:6040890-6041089:1:region
SIO_000974: c15131dd-619d-423a-8919-7858a202e12c

position:6040890:1
position: 6040890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6041089:1
position: 6041089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c15131dd-619d-423a-8919-7858a202e12c
SIO_000300: 1
SIO_000628: feature:6040890-6041089:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6490332..6490531
location: region:6490332-6490531:1
BFO_0000051: feature:6490332-6490531:1:region
SIO_000974: 374e35cc-4b7d-4724-9fd5-062e49063995

position:6490332:1
position: 6490332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6490531:1
position: 6490531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

374e35cc-4b7d-4724-9fd5-062e49063995
SIO_000300: 1
SIO_000628: feature:6490332-6490531:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8330715..8331214
location: region:8330715-8331214:1
BFO_0000051: feature:8330715-8331214:1:region
SIO_000974: 42417ff2-4dec-499b-9a30-0fca6803af5c

position:8330715:1
position: 8330715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8331214:1
position: 8331214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8330715-8331214:1:region

Lysandra bellargus genome assembly, chromosome: 17.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 17.
sequence version: HG995336.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11438254
topology: linear
RO_0000086: SO_0000987
location: 1..11438254
location: region:1-11438254:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11438254:1
position: 11438254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11438254:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 17
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3278103..3278602
location: region:3278103-3278602:1
BFO_0000051: feature:3278103-3278602:1:region
SIO_000974: 0cd39b86-ad39-414c-b0a6-0efb869c0c13

position:3278103:1
position: 3278103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3278602:1
position: 3278602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3278103-3278602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4510795..4510994
location: region:4510795-4510994:1
BFO_0000051: feature:4510795-4510994:1:region
SIO_000974: 25af2fbf-a430-4de1-9ce8-25a477004924

position:4510795:1
position: 4510795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4510994:1
position: 4510994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

25af2fbf-a430-4de1-9ce8-25a477004924
SIO_000300: 1
SIO_000628: feature:4510795-4510994:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4995553..4995752
location: region:4995553-4995752:1
BFO_0000051: feature:4995553-4995752:1:region
SIO_000974: 38df60d9-8a98-4106-b22f-208f5fc43d5a

position:4995553:1
position: 4995553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4995752:1
position: 4995752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4995553-4995752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5919973..5920172
location: region:5919973-5920172:1
BFO_0000051: feature:5919973-5920172:1:region
SIO_000974: 5c911f39-1403-423a-9411-f662606dcea1

position:5919973:1
position: 5919973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5920172:1
position: 5920172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5919973-5920172:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7854402..7854901
location: region:7854402-7854901:1
BFO_0000051: feature:7854402-7854901:1:region
SIO_000974: bd6396cd-33f2-4ecb-b4f8-a14c06f44790

position:7854402:1
position: 7854402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7854901:1
position: 7854901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bd6396cd-33f2-4ecb-b4f8-a14c06f44790
SIO_000300: 1
SIO_000628: feature:7854402-7854901:1:region

Lysandra bellargus genome assembly, chromosome: 18.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 18.
sequence version: HG995337.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11205580
topology: linear
RO_0000086: SO_0000987
location: 1..11205580
location: region:1-11205580:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11205580:1
position: 11205580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11205580:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 18
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1969794..1969993
location: region:1969794-1969993:1
BFO_0000051: feature:1969794-1969993:1:region
SIO_000974: 1834ba2a-39fc-46c2-8941-feb1aca7090a

position:1969794:1
position: 1969794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1969993:1
position: 1969993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1834ba2a-39fc-46c2-8941-feb1aca7090a
SIO_000300: 1
SIO_000628: feature:1969794-1969993:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2012740..2012939
location: region:2012740-2012939:1
BFO_0000051: feature:2012740-2012939:1:region
SIO_000974: 4eac49ba-53c2-4059-85e5-0e52b89e697b

position:2012740:1
position: 2012740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2012939:1
position: 2012939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2012740-2012939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4222611..4222810
location: region:4222611-4222810:1
BFO_0000051: feature:4222611-4222810:1:region
SIO_000974: 762a9e97-2fb0-49da-b107-2fdd16c6c203

position:4222611:1
position: 4222611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4222810:1
position: 4222810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4222611-4222810:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4608426..4608625
location: region:4608426-4608625:1
BFO_0000051: feature:4608426-4608625:1:region
SIO_000974: 9299b11f-5191-473e-9147-fed44bbff8ed

position:4608426:1
position: 4608426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4608625:1
position: 4608625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4608426-4608625:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7735198..7735697
location: region:7735198-7735697:1
BFO_0000051: feature:7735198-7735697:1:region
SIO_000974: 2d8ce27b-72bd-476c-9f54-5941850c6009

position:7735198:1
position: 7735198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7735697:1
position: 7735697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d8ce27b-72bd-476c-9f54-5941850c6009
SIO_000300: 1
SIO_000628: feature:7735198-7735697:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8641555..8641754
location: region:8641555-8641754:1
BFO_0000051: feature:8641555-8641754:1:region
SIO_000974: 60560c31-06ee-4c7d-afd0-c3d74d9e2c51

position:8641555:1
position: 8641555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8641754:1
position: 8641754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60560c31-06ee-4c7d-afd0-c3d74d9e2c51
SIO_000300: 1
SIO_000628: feature:8641555-8641754:1:region

Lysandra bellargus genome assembly, chromosome: 19.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 19.
sequence version: HG995338.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11109960
topology: linear
RO_0000086: SO_0000987
location: 1..11109960
location: region:1-11109960:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11109960:1
position: 11109960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11109960:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 19
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2827680..2827879
location: region:2827680-2827879:1
BFO_0000051: feature:2827680-2827879:1:region
SIO_000974: 5d867880-a32b-48cc-925e-792c79d55c60

position:2827680:1
position: 2827680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2827879:1
position: 2827879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5d867880-a32b-48cc-925e-792c79d55c60
SIO_000300: 1
SIO_000628: feature:2827680-2827879:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3784976..3785175
location: region:3784976-3785175:1
BFO_0000051: feature:3784976-3785175:1:region
SIO_000974: a2e6e9c8-ff62-48c9-9e21-06232f39d0ef

position:3784976:1
position: 3784976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3785175:1
position: 3785175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3784976-3785175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5382455..5382654
location: region:5382455-5382654:1
BFO_0000051: feature:5382455-5382654:1:region
SIO_000974: 21a8789d-9c9e-4aa7-b441-18db1a175c0c

position:5382455:1
position: 5382455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5382654:1
position: 5382654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21a8789d-9c9e-4aa7-b441-18db1a175c0c
SIO_000300: 1
SIO_000628: feature:5382455-5382654:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6355985..6356184
location: region:6355985-6356184:1
BFO_0000051: feature:6355985-6356184:1:region
SIO_000974: 0944ae58-03f3-4169-aab2-e0891c46d221

position:6355985:1
position: 6355985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6356184:1
position: 6356184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0944ae58-03f3-4169-aab2-e0891c46d221
SIO_000300: 1
SIO_000628: feature:6355985-6356184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9041848..9042347
location: region:9041848-9042347:1
BFO_0000051: feature:9041848-9042347:1:region
SIO_000974: 13c83b9f-b97c-44bb-832c-50f8e6024aca

position:9041848:1
position: 9041848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9042347:1
position: 9042347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

13c83b9f-b97c-44bb-832c-50f8e6024aca
SIO_000300: 1
SIO_000628: feature:9041848-9042347:1:region

Lysandra bellargus genome assembly, chromosome: 20.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 20.
sequence version: HG995339.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11086604
topology: linear
RO_0000086: SO_0000987
location: 1..11086604
location: region:1-11086604:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11086604:1
position: 11086604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11086604:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 20
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4807515..4807714
location: region:4807515-4807714:1
BFO_0000051: feature:4807515-4807714:1:region
SIO_000974: efd23fa0-c5af-4086-a1da-631f4ede05b9

position:4807515:1
position: 4807515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4807714:1
position: 4807714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efd23fa0-c5af-4086-a1da-631f4ede05b9
SIO_000300: 1
SIO_000628: feature:4807515-4807714:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6285022..6285221
location: region:6285022-6285221:1
BFO_0000051: feature:6285022-6285221:1:region
SIO_000974: 63acd2da-3cc6-4c03-8b99-23d1b01d5248

position:6285022:1
position: 6285022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6285221:1
position: 6285221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

63acd2da-3cc6-4c03-8b99-23d1b01d5248
SIO_000300: 1
SIO_000628: feature:6285022-6285221:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6572373..6572572
location: region:6572373-6572572:1
BFO_0000051: feature:6572373-6572572:1:region
SIO_000974: 3db435a3-44ee-4b6f-9db0-9f37c43eaa97

position:6572373:1
position: 6572373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6572572:1
position: 6572572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3db435a3-44ee-4b6f-9db0-9f37c43eaa97
SIO_000300: 1
SIO_000628: feature:6572373-6572572:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8807000..8807499
location: region:8807000-8807499:1
BFO_0000051: feature:8807000-8807499:1:region
SIO_000974: 09a020b9-b788-4acf-904d-4744a8d661be

position:8807000:1
position: 8807000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8807499:1
position: 8807499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

09a020b9-b788-4acf-904d-4744a8d661be
SIO_000300: 1
SIO_000628: feature:8807000-8807499:1:region

Lysandra bellargus genome assembly, chromosome: 21.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 21.
sequence version: HG995340.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 11028691
topology: linear
RO_0000086: SO_0000987
location: 1..11028691
location: region:1-11028691:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11028691:1
position: 11028691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11028691:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 21
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1393580..1393779
location: region:1393580-1393779:1
BFO_0000051: feature:1393580-1393779:1:region
SIO_000974: e1824d47-0992-419c-9fc7-1dee30f52103

position:1393580:1
position: 1393580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1393779:1
position: 1393779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e1824d47-0992-419c-9fc7-1dee30f52103
SIO_000300: 1
SIO_000628: feature:1393580-1393779:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3657626..3658125
location: region:3657626-3658125:1
BFO_0000051: feature:3657626-3658125:1:region
SIO_000974: 8e090c26-0bf0-4bb7-9291-a41c644e20b7

position:3657626:1
position: 3657626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3658125:1
position: 3658125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8e090c26-0bf0-4bb7-9291-a41c644e20b7
SIO_000300: 1
SIO_000628: feature:3657626-3658125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6804346..6804845
location: region:6804346-6804845:1
BFO_0000051: feature:6804346-6804845:1:region
SIO_000974: c3e2ed54-53f8-4372-ab9a-5ece93a8a73a

position:6804346:1
position: 6804346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6804845:1
position: 6804845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3e2ed54-53f8-4372-ab9a-5ece93a8a73a
SIO_000300: 1
SIO_000628: feature:6804346-6804845:1:region

Lysandra bellargus genome assembly, chromosome: 22.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 22.
sequence version: HG995341.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10807506
topology: linear
RO_0000086: SO_0000987
location: 1..10807506
location: region:1-10807506:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10807506:1
position: 10807506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10807506:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1476805..1477304
location: region:1476805-1477304:1
BFO_0000051: feature:1476805-1477304:1:region
SIO_000974: 879b0937-b13a-4488-b1f0-dc667e05ce4e

position:1476805:1
position: 1476805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1477304:1
position: 1477304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

879b0937-b13a-4488-b1f0-dc667e05ce4e
SIO_000300: 1
SIO_000628: feature:1476805-1477304:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3160425..3160624
location: region:3160425-3160624:1
BFO_0000051: feature:3160425-3160624:1:region
SIO_000974: 3e4746b7-0144-4168-aadb-0874698d0b5c

position:3160425:1
position: 3160425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3160624:1
position: 3160624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3e4746b7-0144-4168-aadb-0874698d0b5c
SIO_000300: 1
SIO_000628: feature:3160425-3160624:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5088059..5088258
location: region:5088059-5088258:1
BFO_0000051: feature:5088059-5088258:1:region
SIO_000974: 932f2841-9696-4eba-a441-02667cc65ccc

position:5088059:1
position: 5088059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5088258:1
position: 5088258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

932f2841-9696-4eba-a441-02667cc65ccc
SIO_000300: 1
SIO_000628: feature:5088059-5088258:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5140990..5141189
location: region:5140990-5141189:1
BFO_0000051: feature:5140990-5141189:1:region
SIO_000974: f6c763c9-5ff8-49cc-b1d2-6ecc4b2a8e95

position:5140990:1
position: 5140990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5141189:1
position: 5141189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f6c763c9-5ff8-49cc-b1d2-6ecc4b2a8e95
SIO_000300: 1
SIO_000628: feature:5140990-5141189:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6690140..6690339
location: region:6690140-6690339:1
BFO_0000051: feature:6690140-6690339:1:region
SIO_000974: 09d81d2d-b005-4a07-8965-d5fda3a44aa4

position:6690140:1
position: 6690140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6690339:1
position: 6690339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

09d81d2d-b005-4a07-8965-d5fda3a44aa4
SIO_000300: 1
SIO_000628: feature:6690140-6690339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9294293..9294792
location: region:9294293-9294792:1
BFO_0000051: feature:9294293-9294792:1:region
SIO_000974: 55e54220-c97b-4bd9-8f24-ba8dd40eb6f9

position:9294293:1
position: 9294293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9294792:1
position: 9294792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

55e54220-c97b-4bd9-8f24-ba8dd40eb6f9
SIO_000300: 1
SIO_000628: feature:9294293-9294792:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10080752..10081251
location: region:10080752-10081251:1
BFO_0000051: feature:10080752-10081251:1:region
SIO_000974: aea0808f-866e-44f7-af93-066a6db38731

position:10080752:1
position: 10080752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10081251:1
position: 10081251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aea0808f-866e-44f7-af93-066a6db38731
SIO_000300: 1
SIO_000628: feature:10080752-10081251:1:region

Lysandra bellargus genome assembly, chromosome: 23.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 23.
sequence version: HG995342.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10760480
topology: linear
RO_0000086: SO_0000987
location: 1..10760480
location: region:1-10760480:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10760480:1
position: 10760480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10760480:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4084063..4084262
location: region:4084063-4084262:1
BFO_0000051: feature:4084063-4084262:1:region
SIO_000974: 57f4b83d-3012-4005-a61d-465c634d701e

position:4084063:1
position: 4084063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4084262:1
position: 4084262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57f4b83d-3012-4005-a61d-465c634d701e
SIO_000300: 1
SIO_000628: feature:4084063-4084262:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5262731..5262930
location: region:5262731-5262930:1
BFO_0000051: feature:5262731-5262930:1:region
SIO_000974: ae6b4f59-97cc-4bf2-8418-18c217c0eeb5

position:5262731:1
position: 5262731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5262930:1
position: 5262930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ae6b4f59-97cc-4bf2-8418-18c217c0eeb5
SIO_000300: 1
SIO_000628: feature:5262731-5262930:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 7211692..7212191
location: region:7211692-7212191:1
BFO_0000051: feature:7211692-7212191:1:region
SIO_000974: c60802cb-f9a4-466f-aec6-6bb4ed40c359

position:7211692:1
position: 7211692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7212191:1
position: 7212191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c60802cb-f9a4-466f-aec6-6bb4ed40c359
SIO_000300: 1
SIO_000628: feature:7211692-7212191:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 9040090..9040589
location: region:9040090-9040589:1
BFO_0000051: feature:9040090-9040589:1:region
SIO_000974: 3dd6ddd3-96d8-4ed4-ae4a-386e4e7f0cf2

position:9040090:1
position: 9040090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9040589:1
position: 9040589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3dd6ddd3-96d8-4ed4-ae4a-386e4e7f0cf2
SIO_000300: 1
SIO_000628: feature:9040090-9040589:1:region

Lysandra bellargus genome assembly, chromosome: 24.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 24.
sequence version: HG995343.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10705495
topology: linear
RO_0000086: SO_0000987
location: 1..10705495
location: region:1-10705495:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10705495:1
position: 10705495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10705495:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 24
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 740091..740290
location: region:740091-740290:1
BFO_0000051: feature:740091-740290:1:region
SIO_000974: 759c5191-ed36-4e29-b19d-5f051cc73c99

position:740091:1
position: 740091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:740290:1
position: 740290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

759c5191-ed36-4e29-b19d-5f051cc73c99
SIO_000300: 1
SIO_000628: feature:740091-740290:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2568421..2568620
location: region:2568421-2568620:1
BFO_0000051: feature:2568421-2568620:1:region
SIO_000974: 10f3dafb-db01-482f-9622-549907bc1e9a

position:2568421:1
position: 2568421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2568620:1
position: 2568620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

10f3dafb-db01-482f-9622-549907bc1e9a
SIO_000300: 1
SIO_000628: feature:2568421-2568620:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4753531..4753730
location: region:4753531-4753730:1
BFO_0000051: feature:4753531-4753730:1:region
SIO_000974: 37009e00-099f-4f6c-aaa6-e2c82cf99597

position:4753531:1
position: 4753531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4753730:1
position: 4753730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

37009e00-099f-4f6c-aaa6-e2c82cf99597
SIO_000300: 1
SIO_000628: feature:4753531-4753730:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6197401..6197600
location: region:6197401-6197600:1
BFO_0000051: feature:6197401-6197600:1:region
SIO_000974: 467a3d1e-a80b-438c-8361-0d837db3c364

position:6197401:1
position: 6197401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6197600:1
position: 6197600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

467a3d1e-a80b-438c-8361-0d837db3c364
SIO_000300: 1
SIO_000628: feature:6197401-6197600:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8546292..8546791
location: region:8546292-8546791:1
BFO_0000051: feature:8546292-8546791:1:region
SIO_000974: b12794d4-7ec8-472e-a6a1-30d983b4dabf

position:8546292:1
position: 8546292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8546791:1
position: 8546791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b12794d4-7ec8-472e-a6a1-30d983b4dabf
SIO_000300: 1
SIO_000628: feature:8546292-8546791:1:region

Lysandra bellargus genome assembly, chromosome: 25.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 25.
sequence version: HG995344.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10239049
topology: linear
RO_0000086: SO_0000987
location: 1..10239049
location: region:1-10239049:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10239049:1
position: 10239049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10239049:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 25
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1852027..1852226
location: region:1852027-1852226:1
BFO_0000051: feature:1852027-1852226:1:region
SIO_000974: 006c9d37-8ffa-4b5d-84d7-210609915bb2

position:1852027:1
position: 1852027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1852226:1
position: 1852226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

006c9d37-8ffa-4b5d-84d7-210609915bb2
SIO_000300: 1
SIO_000628: feature:1852027-1852226:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2647994..2648193
location: region:2647994-2648193:1
BFO_0000051: feature:2647994-2648193:1:region
SIO_000974: 2a2926d9-1c41-4c98-a9fb-733c9299dff5

position:2647994:1
position: 2647994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2648193:1
position: 2648193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a2926d9-1c41-4c98-a9fb-733c9299dff5
SIO_000300: 1
SIO_000628: feature:2647994-2648193:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3178312..3178511
location: region:3178312-3178511:1
BFO_0000051: feature:3178312-3178511:1:region
SIO_000974: 751c2d7b-152b-45d4-844f-e80feca8bc2a

position:3178312:1
position: 3178312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3178511:1
position: 3178511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

751c2d7b-152b-45d4-844f-e80feca8bc2a
SIO_000300: 1
SIO_000628: feature:3178312-3178511:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3807721..3807920
location: region:3807721-3807920:1
BFO_0000051: feature:3807721-3807920:1:region
SIO_000974: 74d63ae5-7266-4e29-8bd9-6a71dbc7f078

position:3807721:1
position: 3807721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3807920:1
position: 3807920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74d63ae5-7266-4e29-8bd9-6a71dbc7f078
SIO_000300: 1
SIO_000628: feature:3807721-3807920:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4112044..4112243
location: region:4112044-4112243:1
BFO_0000051: feature:4112044-4112243:1:region
SIO_000974: 6d373e68-0ef8-4ada-a184-dce211b20f38

position:4112044:1
position: 4112044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4112243:1
position: 4112243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d373e68-0ef8-4ada-a184-dce211b20f38
SIO_000300: 1
SIO_000628: feature:4112044-4112243:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5795023..5795222
location: region:5795023-5795222:1
BFO_0000051: feature:5795023-5795222:1:region
SIO_000974: 31105a79-0b57-4462-a354-b711053a33fd

position:5795023:1
position: 5795023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5795222:1
position: 5795222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31105a79-0b57-4462-a354-b711053a33fd
SIO_000300: 1
SIO_000628: feature:5795023-5795222:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6891488..6891687
location: region:6891488-6891687:1
BFO_0000051: feature:6891488-6891687:1:region
SIO_000974: 7682dc90-6409-46b3-bb08-647a29905adf

position:6891488:1
position: 6891488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6891687:1
position: 6891687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7682dc90-6409-46b3-bb08-647a29905adf
SIO_000300: 1
SIO_000628: feature:6891488-6891687:1:region

Lysandra bellargus genome assembly, chromosome: 26.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 26.
sequence version: HG995345.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10162550
topology: linear
RO_0000086: SO_0000987
location: 1..10162550
location: region:1-10162550:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10162550:1
position: 10162550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10162550:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1575082..1575281
location: region:1575082-1575281:1
BFO_0000051: feature:1575082-1575281:1:region
SIO_000974: b4f93666-d81d-40e3-9ec5-095f636bb522

position:1575082:1
position: 1575082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1575281:1
position: 1575281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4f93666-d81d-40e3-9ec5-095f636bb522
SIO_000300: 1
SIO_000628: feature:1575082-1575281:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5043355..5043554
location: region:5043355-5043554:1
BFO_0000051: feature:5043355-5043554:1:region
SIO_000974: 3c7cdafe-2276-4cca-b7ca-ff266db82c8b

position:5043355:1
position: 5043355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5043554:1
position: 5043554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c7cdafe-2276-4cca-b7ca-ff266db82c8b
SIO_000300: 1
SIO_000628: feature:5043355-5043554:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5765303..5765502
location: region:5765303-5765502:1
BFO_0000051: feature:5765303-5765502:1:region
SIO_000974: 74226dd5-98f5-42b0-8d13-f05509692569

position:5765303:1
position: 5765303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5765502:1
position: 5765502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

74226dd5-98f5-42b0-8d13-f05509692569
SIO_000300: 1
SIO_000628: feature:5765303-5765502:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6801242..6801441
location: region:6801242-6801441:1
BFO_0000051: feature:6801242-6801441:1:region
SIO_000974: 267ab60b-5af6-4964-bdc5-15c3cdb0ee3e

position:6801242:1
position: 6801242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6801441:1
position: 6801441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

267ab60b-5af6-4964-bdc5-15c3cdb0ee3e
SIO_000300: 1
SIO_000628: feature:6801242-6801441:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7390276..7390475
location: region:7390276-7390475:1
BFO_0000051: feature:7390276-7390475:1:region
SIO_000974: 8fb7ef31-59ac-458a-af7d-485376c29181

position:7390276:1
position: 7390276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7390475:1
position: 7390475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8fb7ef31-59ac-458a-af7d-485376c29181
SIO_000300: 1
SIO_000628: feature:7390276-7390475:1:region

Lysandra bellargus genome assembly, chromosome: 27.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 27.
sequence version: HG995346.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10086724
topology: linear
RO_0000086: SO_0000987
location: 1..10086724
location: region:1-10086724:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10086724:1
position: 10086724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10086724:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 608758..609257
location: region:608758-609257:1
BFO_0000051: feature:608758-609257:1:region
SIO_000974: 56ef53c5-bcd5-4f46-91b6-0b9317515fa3

position:608758:1
position: 608758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609257:1
position: 609257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

56ef53c5-bcd5-4f46-91b6-0b9317515fa3
SIO_000300: 1
SIO_000628: feature:608758-609257:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5050198..5050397
location: region:5050198-5050397:1
BFO_0000051: feature:5050198-5050397:1:region
SIO_000974: 5e974985-892e-4cab-ac8c-07567e60b8e2

position:5050198:1
position: 5050198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5050397:1
position: 5050397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e974985-892e-4cab-ac8c-07567e60b8e2
SIO_000300: 1
SIO_000628: feature:5050198-5050397:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5258861..5259060
location: region:5258861-5259060:1
BFO_0000051: feature:5258861-5259060:1:region
SIO_000974: a656b26b-77d5-455d-9d4d-b06ff5bc98db

position:5258861:1
position: 5258861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5259060:1
position: 5259060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a656b26b-77d5-455d-9d4d-b06ff5bc98db
SIO_000300: 1
SIO_000628: feature:5258861-5259060:1:region

Lysandra bellargus genome assembly, chromosome: 28.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 28.
sequence version: HG995347.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10086307
topology: linear
RO_0000086: SO_0000987
location: 1..10086307
location: region:1-10086307:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10086307:1
position: 10086307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10086307:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1824941..1825140
location: region:1824941-1825140:1
BFO_0000051: feature:1824941-1825140:1:region
SIO_000974: bdf4ef25-9e93-47e3-87f4-d33a12c43364

position:1824941:1
position: 1824941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1825140:1
position: 1825140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bdf4ef25-9e93-47e3-87f4-d33a12c43364
SIO_000300: 1
SIO_000628: feature:1824941-1825140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2058513..2058712
location: region:2058513-2058712:1
BFO_0000051: feature:2058513-2058712:1:region
SIO_000974: 6ca4f7de-09cf-43eb-8979-a60beee1a3bb

position:2058513:1
position: 2058513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2058712:1
position: 2058712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6ca4f7de-09cf-43eb-8979-a60beee1a3bb
SIO_000300: 1
SIO_000628: feature:2058513-2058712:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5972186..5972685
location: region:5972186-5972685:1
BFO_0000051: feature:5972186-5972685:1:region
SIO_000974: af37cfe4-a9ac-46b7-bd40-577cdafebb58

position:5972186:1
position: 5972186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5972685:1
position: 5972685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af37cfe4-a9ac-46b7-bd40-577cdafebb58
SIO_000300: 1
SIO_000628: feature:5972186-5972685:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9988436..9988635
location: region:9988436-9988635:1
BFO_0000051: feature:9988436-9988635:1:region
SIO_000974: e0e03650-3cf2-4a79-95bf-3728b83d840d

position:9988436:1
position: 9988436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9988635:1
position: 9988635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e0e03650-3cf2-4a79-95bf-3728b83d840d
SIO_000300: 1
SIO_000628: feature:9988436-9988635:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 10058724..10059223
location: region:10058724-10059223:1
BFO_0000051: feature:10058724-10059223:1:region
SIO_000974: 4244f30d-2774-47ec-b921-088d09c90f18

position:10058724:1
position: 10058724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10059223:1
position: 10059223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4244f30d-2774-47ec-b921-088d09c90f18
SIO_000300: 1
SIO_000628: feature:10058724-10059223:1:region

Lysandra bellargus genome assembly, chromosome: 29.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 29.
sequence version: HG995348.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10042148
topology: linear
RO_0000086: SO_0000987
location: 1..10042148
location: region:1-10042148:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10042148:1
position: 10042148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10042148:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1615184..1615683
location: region:1615184-1615683:1
BFO_0000051: feature:1615184-1615683:1:region
SIO_000974: 0eecc6cc-497c-4910-822a-569dc4df700f

position:1615184:1
position: 1615184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1615683:1
position: 1615683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0eecc6cc-497c-4910-822a-569dc4df700f
SIO_000300: 1
SIO_000628: feature:1615184-1615683:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3270793..3270992
location: region:3270793-3270992:1
BFO_0000051: feature:3270793-3270992:1:region
SIO_000974: 370fcdf1-a78e-4129-8f6f-e3ec810401ea

position:3270793:1
position: 3270793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3270992:1
position: 3270992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

370fcdf1-a78e-4129-8f6f-e3ec810401ea
SIO_000300: 1
SIO_000628: feature:3270793-3270992:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4872003..4872202
location: region:4872003-4872202:1
BFO_0000051: feature:4872003-4872202:1:region
SIO_000974: e489da46-57fb-4082-b4cf-75c08ee6ee23

position:4872003:1
position: 4872003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4872202:1
position: 4872202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e489da46-57fb-4082-b4cf-75c08ee6ee23
SIO_000300: 1
SIO_000628: feature:4872003-4872202:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6318114..6318613
location: region:6318114-6318613:1
BFO_0000051: feature:6318114-6318613:1:region
SIO_000974: 1643492e-ba9a-4d7d-8969-a71c83905e7a

position:6318114:1
position: 6318114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6318613:1
position: 6318613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1643492e-ba9a-4d7d-8969-a71c83905e7a
SIO_000300: 1
SIO_000628: feature:6318114-6318613:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7948758..7948957
location: region:7948758-7948957:1
BFO_0000051: feature:7948758-7948957:1:region
SIO_000974: efe348e7-edbd-4432-996c-6046c7d0838e

position:7948758:1
position: 7948758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7948957:1
position: 7948957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

efe348e7-edbd-4432-996c-6046c7d0838e
SIO_000300: 1
SIO_000628: feature:7948758-7948957:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8026995..8027194
location: region:8026995-8027194:1
BFO_0000051: feature:8026995-8027194:1:region
SIO_000974: 96940c3e-973e-447a-af42-93f7495369ec

position:8026995:1
position: 8026995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8027194:1
position: 8027194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

96940c3e-973e-447a-af42-93f7495369ec
SIO_000300: 1
SIO_000628: feature:8026995-8027194:1:region

Lysandra bellargus genome assembly, chromosome: 30.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 30.
sequence version: HG995349.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9990636
topology: linear
RO_0000086: SO_0000987
location: 1..9990636
location: region:1-9990636:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9990636:1
position: 9990636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9990636:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 30
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 543087..543286
location: region:543087-543286:1
BFO_0000051: feature:543087-543286:1:region
SIO_000974: b5130bbf-3b44-4ce5-b72e-8e83704fb8fb

position:543087:1
position: 543087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543286:1
position: 543286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b5130bbf-3b44-4ce5-b72e-8e83704fb8fb
SIO_000300: 1
SIO_000628: feature:543087-543286:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2343474..2343673
location: region:2343474-2343673:1
BFO_0000051: feature:2343474-2343673:1:region
SIO_000974: 8d0e37a7-374d-44a9-82f7-a85efe46d10d

position:2343474:1
position: 2343474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2343673:1
position: 2343673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d0e37a7-374d-44a9-82f7-a85efe46d10d
SIO_000300: 1
SIO_000628: feature:2343474-2343673:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2476597..2476796
location: region:2476597-2476796:1
BFO_0000051: feature:2476597-2476796:1:region
SIO_000974: f1c6e66b-748b-4d8a-8af1-d20689513897

position:2476597:1
position: 2476597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2476796:1
position: 2476796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f1c6e66b-748b-4d8a-8af1-d20689513897
SIO_000300: 1
SIO_000628: feature:2476597-2476796:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5816390..5816889
location: region:5816390-5816889:1
BFO_0000051: feature:5816390-5816889:1:region
SIO_000974: af9ffbf9-498f-475c-8349-cd7a214908f2

position:5816390:1
position: 5816390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5816889:1
position: 5816889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af9ffbf9-498f-475c-8349-cd7a214908f2
SIO_000300: 1
SIO_000628: feature:5816390-5816889:1:region

Lysandra bellargus genome assembly, chromosome: 31.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 31.
sequence version: HG995350.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9855470
topology: linear
RO_0000086: SO_0000987
location: 1..9855470
location: region:1-9855470:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9855470:1
position: 9855470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9855470:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 31
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4469360..4469559
location: region:4469360-4469559:1
BFO_0000051: feature:4469360-4469559:1:region
SIO_000974: ab98cc1a-c789-45b7-bd22-d82f90c7cc7d

position:4469360:1
position: 4469360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4469559:1
position: 4469559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab98cc1a-c789-45b7-bd22-d82f90c7cc7d
SIO_000300: 1
SIO_000628: feature:4469360-4469559:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6267517..6267716
location: region:6267517-6267716:1
BFO_0000051: feature:6267517-6267716:1:region
SIO_000974: 8a980dc8-b50c-477a-b9d5-d4f0245e768d

position:6267517:1
position: 6267517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6267716:1
position: 6267716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a980dc8-b50c-477a-b9d5-d4f0245e768d
SIO_000300: 1
SIO_000628: feature:6267517-6267716:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8454131..8454630
location: region:8454131-8454630:1
BFO_0000051: feature:8454131-8454630:1:region
SIO_000974: 1baced7f-ed85-4fdc-a239-96a07969677f

position:8454131:1
position: 8454131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8454630:1
position: 8454630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1baced7f-ed85-4fdc-a239-96a07969677f
SIO_000300: 1
SIO_000628: feature:8454131-8454630:1:region

Lysandra bellargus genome assembly, chromosome: 32.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 32.
sequence version: HG995351.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9833389
topology: linear
RO_0000086: SO_0000987
location: 1..9833389
location: region:1-9833389:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9833389:1
position: 9833389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9833389:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 32
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3673974..3674173
location: region:3673974-3674173:1
BFO_0000051: feature:3673974-3674173:1:region
SIO_000974: 3c7cb4f2-9485-4ce7-a9ca-b0296a57bc40

position:3673974:1
position: 3673974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3674173:1
position: 3674173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3c7cb4f2-9485-4ce7-a9ca-b0296a57bc40
SIO_000300: 1
SIO_000628: feature:3673974-3674173:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5088996..5089195
location: region:5088996-5089195:1
BFO_0000051: feature:5088996-5089195:1:region
SIO_000974: 2d7e4340-9e83-4572-9023-3a73eba2abc2

position:5088996:1
position: 5088996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5089195:1
position: 5089195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2d7e4340-9e83-4572-9023-3a73eba2abc2
SIO_000300: 1
SIO_000628: feature:5088996-5089195:1:region

Lysandra bellargus genome assembly, chromosome: 33.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 33.
sequence version: HG995352.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9524273
topology: linear
RO_0000086: SO_0000987
location: 1..9524273
location: region:1-9524273:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9524273:1
position: 9524273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9524273:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 33
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2408575..2409074
location: region:2408575-2409074:1
BFO_0000051: feature:2408575-2409074:1:region
SIO_000974: 7ce3639e-07e8-4ea1-aa63-eef16d829167

position:2408575:1
position: 2408575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2409074:1
position: 2409074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7ce3639e-07e8-4ea1-aa63-eef16d829167
SIO_000300: 1
SIO_000628: feature:2408575-2409074:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3312140..3312339
location: region:3312140-3312339:1
BFO_0000051: feature:3312140-3312339:1:region
SIO_000974: c3c0bcc4-e4d6-46ee-9115-a59cca5fdb26

position:3312140:1
position: 3312140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3312339:1
position: 3312339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3c0bcc4-e4d6-46ee-9115-a59cca5fdb26
SIO_000300: 1
SIO_000628: feature:3312140-3312339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3499689..3499888
location: region:3499689-3499888:1
BFO_0000051: feature:3499689-3499888:1:region
SIO_000974: ada74b31-2a41-4fee-b577-4a24ce28e1f6

position:3499689:1
position: 3499689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3499888:1
position: 3499888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ada74b31-2a41-4fee-b577-4a24ce28e1f6
SIO_000300: 1
SIO_000628: feature:3499689-3499888:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5190906..5191105
location: region:5190906-5191105:1
BFO_0000051: feature:5190906-5191105:1:region
SIO_000974: 3769db61-16e5-4796-8bb5-f90340e99cc2

position:5190906:1
position: 5190906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5191105:1
position: 5191105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3769db61-16e5-4796-8bb5-f90340e99cc2
SIO_000300: 1
SIO_000628: feature:5190906-5191105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7352564..7352763
location: region:7352564-7352763:1
BFO_0000051: feature:7352564-7352763:1:region
SIO_000974: ec785043-a34f-45ef-8661-74bd0c478b8c

position:7352564:1
position: 7352564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7352763:1
position: 7352763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec785043-a34f-45ef-8661-74bd0c478b8c
SIO_000300: 1
SIO_000628: feature:7352564-7352763:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7424192..7424391
location: region:7424192-7424391:1
BFO_0000051: feature:7424192-7424391:1:region
SIO_000974: 7a8e806a-087b-48d5-a44a-94ebea04cb49

position:7424192:1
position: 7424192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7424391:1
position: 7424391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a8e806a-087b-48d5-a44a-94ebea04cb49
SIO_000300: 1
SIO_000628: feature:7424192-7424391:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8779288..8779487
location: region:8779288-8779487:1
BFO_0000051: feature:8779288-8779487:1:region
SIO_000974: 41ec80f0-daf5-4fce-be99-22b7e7641182

position:8779288:1
position: 8779288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8779487:1
position: 8779487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41ec80f0-daf5-4fce-be99-22b7e7641182
SIO_000300: 1
SIO_000628: feature:8779288-8779487:1:region

Lysandra bellargus genome assembly, chromosome: 34.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 34.
sequence version: HG995353.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9456857
topology: linear
RO_0000086: SO_0000987
location: 1..9456857
location: region:1-9456857:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9456857:1
position: 9456857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9456857:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 34
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2349039..2349238
location: region:2349039-2349238:1
BFO_0000051: feature:2349039-2349238:1:region
SIO_000974: 9c56194b-8ca3-413c-9f52-4a71962516fb

position:2349039:1
position: 2349039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2349238:1
position: 2349238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c56194b-8ca3-413c-9f52-4a71962516fb
SIO_000300: 1
SIO_000628: feature:2349039-2349238:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4506595..4506794
location: region:4506595-4506794:1
BFO_0000051: feature:4506595-4506794:1:region
SIO_000974: 24333041-c643-4ea5-921a-583c388a05ea

position:4506595:1
position: 4506595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4506794:1
position: 4506794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24333041-c643-4ea5-921a-583c388a05ea
SIO_000300: 1
SIO_000628: feature:4506595-4506794:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5795354..5795553
location: region:5795354-5795553:1
BFO_0000051: feature:5795354-5795553:1:region
SIO_000974: a3f5a478-57f3-4e3a-accb-41e6a005f48e

position:5795354:1
position: 5795354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5795553:1
position: 5795553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a3f5a478-57f3-4e3a-accb-41e6a005f48e
SIO_000300: 1
SIO_000628: feature:5795354-5795553:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8216528..8217027
location: region:8216528-8217027:1
BFO_0000051: feature:8216528-8217027:1:region
SIO_000974: c594b898-14d5-4878-b6dc-eb8e04debe0e

position:8216528:1
position: 8216528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8217027:1
position: 8217027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c594b898-14d5-4878-b6dc-eb8e04debe0e
SIO_000300: 1
SIO_000628: feature:8216528-8217027:1:region

Lysandra bellargus genome assembly, chromosome: 35.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 35.
sequence version: HG995354.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9370771
topology: linear
RO_0000086: SO_0000987
location: 1..9370771
location: region:1-9370771:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9370771:1
position: 9370771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9370771:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 35
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1122740..1122939
location: region:1122740-1122939:1
BFO_0000051: feature:1122740-1122939:1:region
SIO_000974: b45666a5-a0b2-4192-81f1-ee4673408b99

position:1122740:1
position: 1122740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1122939:1
position: 1122939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b45666a5-a0b2-4192-81f1-ee4673408b99
SIO_000300: 1
SIO_000628: feature:1122740-1122939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3484399..3484598
location: region:3484399-3484598:1
BFO_0000051: feature:3484399-3484598:1:region
SIO_000974: 9518689f-f273-45ff-80e8-984f63c24f9d

position:3484399:1
position: 3484399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3484598:1
position: 3484598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9518689f-f273-45ff-80e8-984f63c24f9d
SIO_000300: 1
SIO_000628: feature:3484399-3484598:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6520508..6520707
location: region:6520508-6520707:1
BFO_0000051: feature:6520508-6520707:1:region
SIO_000974: 52449528-f28d-424d-b449-f3065027be27

position:6520508:1
position: 6520508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6520707:1
position: 6520707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

52449528-f28d-424d-b449-f3065027be27
SIO_000300: 1
SIO_000628: feature:6520508-6520707:1:region

Lysandra bellargus genome assembly, chromosome: 36.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 36.
sequence version: HG995355.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9263164
topology: linear
RO_0000086: SO_0000987
location: 1..9263164
location: region:1-9263164:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9263164:1
position: 9263164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9263164:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 36
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1977475..1977674
location: region:1977475-1977674:1
BFO_0000051: feature:1977475-1977674:1:region
SIO_000974: 50c0ff31-6ed4-434e-a63e-32665470141e

position:1977475:1
position: 1977475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1977674:1
position: 1977674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

50c0ff31-6ed4-434e-a63e-32665470141e
SIO_000300: 1
SIO_000628: feature:1977475-1977674:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3300580..3300779
location: region:3300580-3300779:1
BFO_0000051: feature:3300580-3300779:1:region
SIO_000974: cf023f91-d6e2-40c7-902c-a9659e762cd2

position:3300580:1
position: 3300580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3300779:1
position: 3300779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf023f91-d6e2-40c7-902c-a9659e762cd2
SIO_000300: 1
SIO_000628: feature:3300580-3300779:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4231785..4231984
location: region:4231785-4231984:1
BFO_0000051: feature:4231785-4231984:1:region
SIO_000974: 3cb13544-a55c-4d9b-8d96-57f8fa99ec4b

position:4231785:1
position: 4231785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4231984:1
position: 4231984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3cb13544-a55c-4d9b-8d96-57f8fa99ec4b
SIO_000300: 1
SIO_000628: feature:4231785-4231984:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5880548..5881047
location: region:5880548-5881047:1
BFO_0000051: feature:5880548-5881047:1:region
SIO_000974: b37e94f2-b530-4aa8-90e7-3dde220cc6f0

position:5880548:1
position: 5880548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5881047:1
position: 5881047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b37e94f2-b530-4aa8-90e7-3dde220cc6f0
SIO_000300: 1
SIO_000628: feature:5880548-5881047:1:region

Lysandra bellargus genome assembly, chromosome: 37.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 37.
sequence version: HG995356.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 9248354
topology: linear
RO_0000086: SO_0000987
location: 1..9248354
location: region:1-9248354:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9248354:1
position: 9248354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9248354:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 37
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2033899..2034098
location: region:2033899-2034098:1
BFO_0000051: feature:2033899-2034098:1:region
SIO_000974: 9d579697-7f72-48de-a246-1f6f2e12852e

position:2033899:1
position: 2033899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2034098:1
position: 2034098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9d579697-7f72-48de-a246-1f6f2e12852e
SIO_000300: 1
SIO_000628: feature:2033899-2034098:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4381522..4381721
location: region:4381522-4381721:1
BFO_0000051: feature:4381522-4381721:1:region
SIO_000974: be1bae0d-7e46-4238-90e1-4b485c9ddba5

position:4381522:1
position: 4381522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4381721:1
position: 4381721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

be1bae0d-7e46-4238-90e1-4b485c9ddba5
SIO_000300: 1
SIO_000628: feature:4381522-4381721:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5990698..5991197
location: region:5990698-5991197:1
BFO_0000051: feature:5990698-5991197:1:region
SIO_000974: e897ebf7-9ffc-4f15-a91e-3b9228145361

position:5990698:1
position: 5990698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5991197:1
position: 5991197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e897ebf7-9ffc-4f15-a91e-3b9228145361
SIO_000300: 1
SIO_000628: feature:5990698-5991197:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 8386157..8386656
location: region:8386157-8386656:1
BFO_0000051: feature:8386157-8386656:1:region
SIO_000974: cf51d5a6-23bc-4f5d-b4fe-92fed3025c14

position:8386157:1
position: 8386157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8386656:1
position: 8386656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cf51d5a6-23bc-4f5d-b4fe-92fed3025c14
SIO_000300: 1
SIO_000628: feature:8386157-8386656:1:region

Lysandra bellargus genome assembly, chromosome: 38.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 38.
sequence version: HG995357.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8994995
topology: linear
RO_0000086: SO_0000987
location: 1..8994995
location: region:1-8994995:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8994995:1
position: 8994995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8994995:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 38
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5267282..5267481
location: region:5267282-5267481:1
BFO_0000051: feature:5267282-5267481:1:region
SIO_000974: 2dcd0ac5-c36b-4b60-8d2b-9c993ea66be0

position:5267282:1
position: 5267282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5267481:1
position: 5267481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dcd0ac5-c36b-4b60-8d2b-9c993ea66be0
SIO_000300: 1
SIO_000628: feature:5267282-5267481:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6001740..6001939
location: region:6001740-6001939:1
BFO_0000051: feature:6001740-6001939:1:region
SIO_000974: a57492dd-ce92-4a4a-bdfa-4511c15ff73c

position:6001740:1
position: 6001740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6001939:1
position: 6001939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a57492dd-ce92-4a4a-bdfa-4511c15ff73c
SIO_000300: 1
SIO_000628: feature:6001740-6001939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7797300..7797499
location: region:7797300-7797499:1
BFO_0000051: feature:7797300-7797499:1:region
SIO_000974: 8a501b17-f789-4c5c-9e36-1ed5c114cab7

position:7797300:1
position: 7797300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7797499:1
position: 7797499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a501b17-f789-4c5c-9e36-1ed5c114cab7
SIO_000300: 1
SIO_000628: feature:7797300-7797499:1:region

Lysandra bellargus genome assembly, chromosome: 39.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 39.
sequence version: HG995358.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8974749
topology: linear
RO_0000086: SO_0000987
location: 1..8974749
location: region:1-8974749:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8974749:1
position: 8974749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8974749:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 39
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1833722..1834221
location: region:1833722-1834221:1
BFO_0000051: feature:1833722-1834221:1:region
SIO_000974: 23cc4419-535a-4cbf-a3fe-875452d49b2f

position:1833722:1
position: 1833722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1834221:1
position: 1834221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1833722-1834221:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6034006..6034505
location: region:6034006-6034505:1
BFO_0000051: feature:6034006-6034505:1:region
SIO_000974: 7d7d6c54-e361-4920-8f60-130fcd367e97

position:6034006:1
position: 6034006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6034505:1
position: 6034505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d7d6c54-e361-4920-8f60-130fcd367e97
SIO_000300: 1
SIO_000628: feature:6034006-6034505:1:region

Lysandra bellargus genome assembly, chromosome: 40.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 40.
sequence version: HG995359.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8940186
topology: linear
RO_0000086: SO_0000987
location: 1..8940186
location: region:1-8940186:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8940186:1
position: 8940186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8940186:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 40
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 850459..850658
location: region:850459-850658:1
BFO_0000051: feature:850459-850658:1:region
SIO_000974: 4ed757e8-d8dc-47c8-b41e-576145384be1

position:850459:1
position: 850459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:850658:1
position: 850658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:850459-850658:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4905049..4905248
location: region:4905049-4905248:1
BFO_0000051: feature:4905049-4905248:1:region
SIO_000974: e00c0dde-f01d-452d-b484-4f2f94537e8e

position:4905049:1
position: 4905049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4905248:1
position: 4905248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:4905049-4905248:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5734304..5734503
location: region:5734304-5734503:1
BFO_0000051: feature:5734304-5734503:1:region
SIO_000974: cca9800e-46a3-481b-bc3c-b03a131d7807

position:5734304:1
position: 5734304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5734503:1
position: 5734503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5734304-5734503:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6671994..6672193
location: region:6671994-6672193:1
BFO_0000051: feature:6671994-6672193:1:region
SIO_000974: 4a3eb230-4f86-46bc-bd5f-c7c2093986bc

position:6671994:1
position: 6671994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6672193:1
position: 6672193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6671994-6672193:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7887371..7887570
location: region:7887371-7887570:1
BFO_0000051: feature:7887371-7887570:1:region
SIO_000974: c0397dc7-06d1-4719-8a4b-89cbfb350d10

position:7887371:1
position: 7887371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7887570:1
position: 7887570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7887371-7887570:1:region

Lysandra bellargus genome assembly, chromosome: 41.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 41.
sequence version: HG995360.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8646685
topology: linear
RO_0000086: SO_0000987
location: 1..8646685
location: region:1-8646685:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8646685:1
position: 8646685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8646685:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 41
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 606748..606947
location: region:606748-606947:1
BFO_0000051: feature:606748-606947:1:region
SIO_000974: 2a1dd636-c5c0-4878-99cc-32380e49e467

position:606748:1
position: 606748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:606947:1
position: 606947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:606748-606947:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5218037..5218236
location: region:5218037-5218236:1
BFO_0000051: feature:5218037-5218236:1:region
SIO_000974: 3c9a4f2f-b5c1-4446-a578-0b66684e3fbf

position:5218037:1
position: 5218037
reference: sequence
type: ForwardStrandPosition
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position:5218236:1
position: 5218236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5218037-5218236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5468623..5469122
location: region:5468623-5469122:1
BFO_0000051: feature:5468623-5469122:1:region
SIO_000974: 81b8d189-0afd-43eb-8c1a-f5bb3ee0500e

position:5468623:1
position: 5468623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5469122:1
position: 5469122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5468623-5469122:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5726648..5726847
location: region:5726648-5726847:1
BFO_0000051: feature:5726648-5726847:1:region
SIO_000974: a385f066-e675-4bac-9f8e-7f6ec1d83bc7

position:5726648:1
position: 5726648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5726847:1
position: 5726847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5726648-5726847:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7677243..7677442
location: region:7677243-7677442:1
BFO_0000051: feature:7677243-7677442:1:region
SIO_000974: a20d0b67-be63-4c68-94d6-86003f666eb0

position:7677243:1
position: 7677243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7677442:1
position: 7677442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a20d0b67-be63-4c68-94d6-86003f666eb0
SIO_000300: 1
SIO_000628: feature:7677243-7677442:1:region

Lysandra bellargus genome assembly, chromosome: 42.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 42.
sequence version: HG995361.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8587678
topology: linear
RO_0000086: SO_0000987
location: 1..8587678
location: region:1-8587678:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8587678:1
position: 8587678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8587678:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 42
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1014525..1015024
location: region:1014525-1015024:1
BFO_0000051: feature:1014525-1015024:1:region
SIO_000974: d7b42bfd-2179-4260-b955-e1cd42c605a8

position:1014525:1
position: 1014525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015024:1
position: 1015024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7b42bfd-2179-4260-b955-e1cd42c605a8
SIO_000300: 1
SIO_000628: feature:1014525-1015024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1308591..1309090
location: region:1308591-1309090:1
BFO_0000051: feature:1308591-1309090:1:region
SIO_000974: 2498deac-2f60-4b52-9afb-d1dedd9b4bc8

position:1308591:1
position: 1308591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1309090:1
position: 1309090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1308591-1309090:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2296326..2296825
location: region:2296326-2296825:1
BFO_0000051: feature:2296326-2296825:1:region
SIO_000974: 6bc634a7-eaf2-40ab-9954-999de83ae8de

position:2296326:1
position: 2296326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2296825:1
position: 2296825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:2296326-2296825:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 3824779..3825278
location: region:3824779-3825278:1
BFO_0000051: feature:3824779-3825278:1:region
SIO_000974: 029547cc-3f43-4fab-9510-ce982970c9af

position:3824779:1
position: 3824779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3825278:1
position: 3825278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3824779-3825278:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5273424..5273623
location: region:5273424-5273623:1
BFO_0000051: feature:5273424-5273623:1:region
SIO_000974: 6bdd8c38-0fa7-40b9-b1db-805481275379

position:5273424:1
position: 5273424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5273623:1
position: 5273623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6bdd8c38-0fa7-40b9-b1db-805481275379
SIO_000300: 1
SIO_000628: feature:5273424-5273623:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6217350..6217549
location: region:6217350-6217549:1
BFO_0000051: feature:6217350-6217549:1:region
SIO_000974: f43a7317-69de-4475-b331-6632e2ddbe42

position:6217350:1
position: 6217350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6217549:1
position: 6217549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f43a7317-69de-4475-b331-6632e2ddbe42
SIO_000300: 1
SIO_000628: feature:6217350-6217549:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6241056..6241255
location: region:6241056-6241255:1
BFO_0000051: feature:6241056-6241255:1:region
SIO_000974: 593dce34-a6ef-4983-9204-3c5ff81517f0

position:6241056:1
position: 6241056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6241255:1
position: 6241255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

593dce34-a6ef-4983-9204-3c5ff81517f0
SIO_000300: 1
SIO_000628: feature:6241056-6241255:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 6926289..6926788
location: region:6926289-6926788:1
BFO_0000051: feature:6926289-6926788:1:region
SIO_000974: d9d158eb-0e48-494f-a63e-f9c32a93a3ff

position:6926289:1
position: 6926289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6926788:1
position: 6926788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d9d158eb-0e48-494f-a63e-f9c32a93a3ff
SIO_000300: 1
SIO_000628: feature:6926289-6926788:1:region

Lysandra bellargus genome assembly, chromosome: 43.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 43.
sequence version: HG995362.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8410809
topology: linear
RO_0000086: SO_0000987
location: 1..8410809
location: region:1-8410809:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8410809:1
position: 8410809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8410809:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 43
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2200470..2200969
location: region:2200470-2200969:1
BFO_0000051: feature:2200470-2200969:1:region
SIO_000974: 1995d351-c503-47b4-bcaf-977d421bd53a

position:2200470:1
position: 2200470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2200969:1
position: 2200969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1995d351-c503-47b4-bcaf-977d421bd53a
SIO_000300: 1
SIO_000628: feature:2200470-2200969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3283416..3283615
location: region:3283416-3283615:1
BFO_0000051: feature:3283416-3283615:1:region
SIO_000974: d697ebd9-d10e-47a2-be47-e50c1da2cdfe

position:3283416:1
position: 3283416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3283615:1
position: 3283615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d697ebd9-d10e-47a2-be47-e50c1da2cdfe
SIO_000300: 1
SIO_000628: feature:3283416-3283615:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4882973..4883172
location: region:4882973-4883172:1
BFO_0000051: feature:4882973-4883172:1:region
SIO_000974: f9e6a7a3-8fab-4d41-9680-6626cfad4e22

position:4882973:1
position: 4882973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4883172:1
position: 4883172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9e6a7a3-8fab-4d41-9680-6626cfad4e22
SIO_000300: 1
SIO_000628: feature:4882973-4883172:1:region

Lysandra bellargus genome assembly, chromosome: 44.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: 44.
sequence version: HG995363.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8292878
topology: linear
RO_0000086: SO_0000987
location: 1..8292878
location: region:1-8292878:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8292878:1
position: 8292878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8292878:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: 44
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1279341..1279840
location: region:1279341-1279840:1
BFO_0000051: feature:1279341-1279840:1:region
SIO_000974: 2b03bd54-3ad0-4e29-8839-3c40f86ffe22

position:1279341:1
position: 1279341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1279840:1
position: 1279840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b03bd54-3ad0-4e29-8839-3c40f86ffe22
SIO_000300: 1
SIO_000628: feature:1279341-1279840:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2081818..2082017
location: region:2081818-2082017:1
BFO_0000051: feature:2081818-2082017:1:region
SIO_000974: 19f69743-1399-4b68-9b02-7d9c3c5324e3

position:2081818:1
position: 2081818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2082017:1
position: 2082017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19f69743-1399-4b68-9b02-7d9c3c5324e3
SIO_000300: 1
SIO_000628: feature:2081818-2082017:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3953554..3953753
location: region:3953554-3953753:1
BFO_0000051: feature:3953554-3953753:1:region
SIO_000974: 2b13b2ff-f600-43c6-b335-fb907711ed26

position:3953554:1
position: 3953554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3953753:1
position: 3953753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b13b2ff-f600-43c6-b335-fb907711ed26
SIO_000300: 1
SIO_000628: feature:3953554-3953753:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4684703..4684902
location: region:4684703-4684902:1
BFO_0000051: feature:4684703-4684902:1:region
SIO_000974: 1090e8b0-22a9-4b36-a4a8-cb7dd4186cf9

position:4684703:1
position: 4684703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4684902:1
position: 4684902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1090e8b0-22a9-4b36-a4a8-cb7dd4186cf9
SIO_000300: 1
SIO_000628: feature:4684703-4684902:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6770865..6771064
location: region:6770865-6771064:1
BFO_0000051: feature:6770865-6771064:1:region
SIO_000974: 7cc31adf-65ec-456f-b1af-68bc80b63a96

position:6770865:1
position: 6770865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6771064:1
position: 6771064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7cc31adf-65ec-456f-b1af-68bc80b63a96
SIO_000300: 1
SIO_000628: feature:6770865-6771064:1:region

Lysandra bellargus genome assembly, chromosome: W.
type: Entry
definition: Lysandra bellargus genome assembly, chromosome: W.
sequence version: HG995364.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 4541931
topology: linear
RO_0000086: SO_0000987
location: 1..4541931
location: region:1-4541931:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4541931:1
position: 4541931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4541931:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 898306..898805
location: region:898306-898805:1
BFO_0000051: feature:898306-898805:1:region
SIO_000974: 19a812c8-4715-40b8-8b1f-16b74199f821

position:898306:1
position: 898306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:898805:1
position: 898805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19a812c8-4715-40b8-8b1f-16b74199f821
SIO_000300: 1
SIO_000628: feature:898306-898805:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 1873066..1873565
location: region:1873066-1873565:1
BFO_0000051: feature:1873066-1873565:1:region
SIO_000974: a22922bf-cd44-4559-ac7c-8e1eefcf51bf

position:1873066:1
position: 1873066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1873565:1
position: 1873565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a22922bf-cd44-4559-ac7c-8e1eefcf51bf
SIO_000300: 1
SIO_000628: feature:1873066-1873565:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 2249658..2250157
location: region:2249658-2250157:1
BFO_0000051: feature:2249658-2250157:1:region
SIO_000974: 725c6d42-9a0e-4961-b940-fc9a9d38f00b

position:2249658:1
position: 2249658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2250157:1
position: 2250157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

725c6d42-9a0e-4961-b940-fc9a9d38f00b
SIO_000300: 1
SIO_000628: feature:2249658-2250157:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2706150..2706349
location: region:2706150-2706349:1
BFO_0000051: feature:2706150-2706349:1:region
SIO_000974: 5076d1c6-2eb2-4812-983d-f22ae8dbd2b8

position:2706150:1
position: 2706150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2706349:1
position: 2706349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5076d1c6-2eb2-4812-983d-f22ae8dbd2b8
SIO_000300: 1
SIO_000628: feature:2706150-2706349:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2771728..2771927
location: region:2771728-2771927:1
BFO_0000051: feature:2771728-2771927:1:region
SIO_000974: 3da3499c-efb0-46dd-9a97-7acaf71e44c1

position:2771728:1
position: 2771728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2771927:1
position: 2771927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3da3499c-efb0-46dd-9a97-7acaf71e44c1
SIO_000300: 1
SIO_000628: feature:2771728-2771927:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2854185..2854384
location: region:2854185-2854384:1
BFO_0000051: feature:2854185-2854384:1:region
SIO_000974: 8ed84826-3637-4b49-ba81-a8a37fdcd688

position:2854185:1
position: 2854185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2854384:1
position: 2854384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ed84826-3637-4b49-ba81-a8a37fdcd688
SIO_000300: 1
SIO_000628: feature:2854185-2854384:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4434053..4434252
location: region:4434053-4434252:1
BFO_0000051: feature:4434053-4434252:1:region
SIO_000974: e982a55e-3863-426d-8fe6-196aae1e5e62

position:4434053:1
position: 4434053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4434252:1
position: 4434252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e982a55e-3863-426d-8fe6-196aae1e5e62
SIO_000300: 1
SIO_000628: feature:4434053-4434252:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4470722..4471221
location: region:4470722-4471221:1
BFO_0000051: feature:4470722-4471221:1:region
SIO_000974: 5e6b3674-53d3-4f75-98db-2cf398fce6bd

position:4470722:1
position: 4470722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4471221:1
position: 4471221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e6b3674-53d3-4f75-98db-2cf398fce6bd
SIO_000300: 1
SIO_000628: feature:4470722-4471221:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 138070
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4509248..4509747
location: region:4509248-4509747:1
BFO_0000051: feature:4509248-4509747:1:region
SIO_000974: 9dc7830a-75dd-4f90-a597-00223b9b6f1e

position:4509248:1
position: 4509248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4509747:1
position: 4509747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9dc7830a-75dd-4f90-a597-00223b9b6f1e
SIO_000300: 1
SIO_000628: feature:4509248-4509747:1:region

Lysandra bellargus genome assembly, organelle: mitochondrion.
type: Entry
definition: Lysandra bellargus genome assembly, organelle: mitochondrion.
sequence version: HG995365.1
sequence date: 2021-03-10
sequence: sequence
division: INV
source: mitochondrion Lysandra bellargus (Adonis blue)
organism: Lysandra bellargus
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra.
reference: 1
comment: The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHiCanu, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15577
topology: linear
RO_0000086: SO_0000987
location: 1..15577
location: region:1-15577:1
RO_0002162: 138070

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15577:1
position: 15577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15577:1:source
BFO_0000050: sequence
organism: Lysandra bellargus
organelle: mitochondrion
mol type: genomic DNA

Atethmia centrago genome assembly, chromosome: Z.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: Z.
sequence version: HG995366.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 40619326
topology: linear
RO_0000086: SO_0000987
location: 1..40619326
location: region:1-40619326:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40619326:1
position: 40619326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-40619326:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: Z
mol type: genomic DNA

988071
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 15000139..15000638
location: region:15000139-15000638:1
BFO_0000051: feature:15000139-15000638:1:region
SIO_000974: cad7b208-51ce-41ed-a7e4-ad703bf22812

position:15000139:1
position: 15000139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15000638:1
position: 15000638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cad7b208-51ce-41ed-a7e4-ad703bf22812
SIO_000300: 1
SIO_000628: feature:15000139-15000638:1:region

Atethmia centrago genome assembly, chromosome: 1.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 1.
sequence version: HG995367.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 37653124
topology: linear
RO_0000086: SO_0000987
location: 1..37653124
location: region:1-37653124:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37653124:1
position: 37653124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37653124:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 1
mol type: genomic DNA

Atethmia centrago genome assembly, chromosome: 2.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 2.
sequence version: HG995368.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 36373313
topology: linear
RO_0000086: SO_0000987
location: 1..36373313
location: region:1-36373313:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36373313:1
position: 36373313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-36373313:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 18542732..18543231
location: region:18542732-18543231:1
BFO_0000051: feature:18542732-18543231:1:region
SIO_000974: 5b99745c-036d-4808-b8f2-b8aebda0d022

position:18542732:1
position: 18542732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18543231:1
position: 18543231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5b99745c-036d-4808-b8f2-b8aebda0d022
SIO_000300: 1
SIO_000628: feature:18542732-18543231:1:region

Atethmia centrago genome assembly, chromosome: 3.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 3.
sequence version: HG995369.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 35020973
topology: linear
RO_0000086: SO_0000987
location: 1..35020973
location: region:1-35020973:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35020973:1
position: 35020973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35020973:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1276019..1276218
location: region:1276019-1276218:1
BFO_0000051: feature:1276019-1276218:1:region
SIO_000974: c846ce78-585a-4899-8b7c-08a335b73836

position:1276019:1
position: 1276019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1276218:1
position: 1276218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c846ce78-585a-4899-8b7c-08a335b73836
SIO_000300: 1
SIO_000628: feature:1276019-1276218:1:region

Atethmia centrago genome assembly, chromosome: 4.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 4.
sequence version: HG995370.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 34671333
topology: linear
RO_0000086: SO_0000987
location: 1..34671333
location: region:1-34671333:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34671333:1
position: 34671333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34671333:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 4449197..4449696
location: region:4449197-4449696:1
BFO_0000051: feature:4449197-4449696:1:region
SIO_000974: da38a072-64f6-4262-bd7b-9ca038987515

position:4449197:1
position: 4449197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4449696:1
position: 4449696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da38a072-64f6-4262-bd7b-9ca038987515
SIO_000300: 1
SIO_000628: feature:4449197-4449696:1:region

Atethmia centrago genome assembly, chromosome: 5.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 5.
sequence version: HG995371.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 34287997
topology: linear
RO_0000086: SO_0000987
location: 1..34287997
location: region:1-34287997:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34287997:1
position: 34287997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34287997:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 743683..743882
location: region:743683-743882:1
BFO_0000051: feature:743683-743882:1:region
SIO_000974: 061db3bc-d6c6-4b6b-9793-c8bf5d1a65ad

position:743683:1
position: 743683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:743882:1
position: 743882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

061db3bc-d6c6-4b6b-9793-c8bf5d1a65ad
SIO_000300: 1
SIO_000628: feature:743683-743882:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1069519..1069718
location: region:1069519-1069718:1
BFO_0000051: feature:1069519-1069718:1:region
SIO_000974: 6cebb46a-9b22-4313-a29f-7cb8c1aaa409

position:1069519:1
position: 1069519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1069718:1
position: 1069718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6cebb46a-9b22-4313-a29f-7cb8c1aaa409
SIO_000300: 1
SIO_000628: feature:1069519-1069718:1:region

Atethmia centrago genome assembly, chromosome: 6.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 6.
sequence version: HG995372.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 34201488
topology: linear
RO_0000086: SO_0000987
location: 1..34201488
location: region:1-34201488:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34201488:1
position: 34201488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34201488:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2419356..2419555
location: region:2419356-2419555:1
BFO_0000051: feature:2419356-2419555:1:region
SIO_000974: ebbef1af-742a-4153-8c94-ea9417224c0a

position:2419356:1
position: 2419356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2419555:1
position: 2419555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ebbef1af-742a-4153-8c94-ea9417224c0a
SIO_000300: 1
SIO_000628: feature:2419356-2419555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4980132..4980331
location: region:4980132-4980331:1
BFO_0000051: feature:4980132-4980331:1:region
SIO_000974: 972745f0-5b88-42fb-a5bf-250a717c869d

position:4980132:1
position: 4980132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4980331:1
position: 4980331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

972745f0-5b88-42fb-a5bf-250a717c869d
SIO_000300: 1
SIO_000628: feature:4980132-4980331:1:region

Atethmia centrago genome assembly, chromosome: 7.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 7.
sequence version: HG995373.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 33899884
topology: linear
RO_0000086: SO_0000987
location: 1..33899884
location: region:1-33899884:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33899884:1
position: 33899884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33899884:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31611447..31611646
location: region:31611447-31611646:1
BFO_0000051: feature:31611447-31611646:1:region
SIO_000974: abdc1db8-21ed-49a7-a378-65b85533b151

position:31611447:1
position: 31611447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31611646:1
position: 31611646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

abdc1db8-21ed-49a7-a378-65b85533b151
SIO_000300: 1
SIO_000628: feature:31611447-31611646:1:region

Atethmia centrago genome assembly, chromosome: 8.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 8.
sequence version: HG995374.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 33210846
topology: linear
RO_0000086: SO_0000987
location: 1..33210846
location: region:1-33210846:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33210846:1
position: 33210846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33210846:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 5645260..5645759
location: region:5645260-5645759:1
BFO_0000051: feature:5645260-5645759:1:region
SIO_000974: 6649cce1-11a6-45fb-a111-37e24b810f70

position:5645260:1
position: 5645260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5645759:1
position: 5645759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6649cce1-11a6-45fb-a111-37e24b810f70
SIO_000300: 1
SIO_000628: feature:5645260-5645759:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30592198..30592397
location: region:30592198-30592397:1
BFO_0000051: feature:30592198-30592397:1:region
SIO_000974: 8a2efe49-7bd6-4e6c-a782-127140c74afa

position:30592198:1
position: 30592198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30592397:1
position: 30592397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8a2efe49-7bd6-4e6c-a782-127140c74afa
SIO_000300: 1
SIO_000628: feature:30592198-30592397:1:region

Atethmia centrago genome assembly, chromosome: 9.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 9.
sequence version: HG995375.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32769878
topology: linear
RO_0000086: SO_0000987
location: 1..32769878
location: region:1-32769878:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32769878:1
position: 32769878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32769878:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 9
mol type: genomic DNA

Atethmia centrago genome assembly, chromosome: 10.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 10.
sequence version: HG995376.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32762140
topology: linear
RO_0000086: SO_0000987
location: 1..32762140
location: region:1-32762140:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32762140:1
position: 32762140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32762140:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 10
mol type: genomic DNA

Atethmia centrago genome assembly, chromosome: 11.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 11.
sequence version: HG995377.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32664395
topology: linear
RO_0000086: SO_0000987
location: 1..32664395
location: region:1-32664395:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32664395:1
position: 32664395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32664395:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 11
mol type: genomic DNA

Atethmia centrago genome assembly, chromosome: 12.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 12.
sequence version: HG995378.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 32561066
topology: linear
RO_0000086: SO_0000987
location: 1..32561066
location: region:1-32561066:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32561066:1
position: 32561066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32561066:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 789383..789582
location: region:789383-789582:1
BFO_0000051: feature:789383-789582:1:region
SIO_000974: 73235907-2faa-4276-96da-5bc1ab258f92

position:789383:1
position: 789383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:789582:1
position: 789582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

73235907-2faa-4276-96da-5bc1ab258f92
SIO_000300: 1
SIO_000628: feature:789383-789582:1:region

Atethmia centrago genome assembly, chromosome: 13.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 13.
sequence version: HG995379.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31773998
topology: linear
RO_0000086: SO_0000987
location: 1..31773998
location: region:1-31773998:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31773998:1
position: 31773998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31773998:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 188680..188879
location: region:188680-188879:1
BFO_0000051: feature:188680-188879:1:region
SIO_000974: 34062779-7eab-4690-922c-226bdf0206b2

position:188680:1
position: 188680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188879:1
position: 188879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34062779-7eab-4690-922c-226bdf0206b2
SIO_000300: 1
SIO_000628: feature:188680-188879:1:region

Atethmia centrago genome assembly, chromosome: 14.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 14.
sequence version: HG995380.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31729918
topology: linear
RO_0000086: SO_0000987
location: 1..31729918
location: region:1-31729918:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31729918:1
position: 31729918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31729918:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 25347625..25348124
location: region:25347625-25348124:1
BFO_0000051: feature:25347625-25348124:1:region
SIO_000974: 4e7c5cc3-9385-4bca-a5a7-19551fa27f6b

position:25347625:1
position: 25347625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25348124:1
position: 25348124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4e7c5cc3-9385-4bca-a5a7-19551fa27f6b
SIO_000300: 1
SIO_000628: feature:25347625-25348124:1:region

Atethmia centrago genome assembly, chromosome: 15.
type: Entry
definition: Atethmia centrago genome assembly, chromosome: 15.
sequence version: HG995381.1
sequence date: 2022-01-30
sequence: sequence
division: INV
source: Atethmia centrago
organism: Atethmia centrago
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia.
reference: 1
reference: 2
reference: 3
comment: The assembly ilAteCent1.3 is based on 29x PacBio data, 10X Genomics\nChromium data, and Arima Hi-C data generated by the Darwin Tree of\nLife\nProject (https://www.darwintreeoflife.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, short-read\npolishing\nusing FreeBayes-called variants from 10X Genomics Chromium reads\naligned\nwith LongRanger, and Hi-C based scaffolding with SALSA2. The\nmitochondrial\ngenome was assembled using MitoHifi. Finally, the assembly was\nanalysed and\nmanually improved using gEVAL. Chromosome-scale scaffolds confirmed\nby the\nHi-C data have been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 31409179
topology: linear
RO_0000086: SO_0000987
location: 1..31409179
location: region:1-31409179:1
RO_0002162: 988071

1
journal: Submitted (08-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

2
journal: Submitted (18-MAR-2021) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

3
journal: Submitted (29-JAN-2022) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31409179:1
position: 31409179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31409179:1:source
BFO_0000050: sequence
organism: Atethmia centrago
chromosome: 15
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3573226..3573425
location: region:3573226-3573425:1
BFO_0000051: feature:3573226-3573425:1:region
SIO_000974: 513b090b-1722-4c11-9ec5-00a04313b3d1

position:3573226:1
position: 3573226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3573425:1
position: 3573425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

513b090b-1722-4c11-9ec5-00a04313b3d1
SIO_000300: 1
SIO_000628: feature:3573226-3573425:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 988071
estimated length: 500
gap type: unknown
BFO_0000050: sequence
location: 16777743..16778242
location: region:16777743-16778242:1
BFO_0000051: feature:16777743-16778242:1:region
SIO_000974: 2b2637c2-c9f9-4064-a0d9-705d9c0f0672

position:16777743:1
position: 16777743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16778242:1
position: 16778242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b2637c2-c9f9-4064-a0d9-705d9c0f0672
SIO_000300: 1
SIO_000628: feature:16777743-16778242:1:region