Musotima nitidalis genome assembly, chromosome: 21.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 21.
sequence version: OX421434.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 16197818
topology: linear
RO_0000086: SO_0000987
location: 1..16197818
location: region:1-16197818:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16197818:1
position: 16197818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16197818:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 21
mol type: genomic DNA

753371
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15887379..15887578
location: region:15887379-15887578:1
BFO_0000051: feature:15887379-15887578:1:region
SIO_000974: e38666e9-955c-4e98-b020-dc2d5565ef8a

position:15887379:1
position: 15887379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15887578:1
position: 15887578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e38666e9-955c-4e98-b020-dc2d5565ef8a
SIO_000300: 1
SIO_000628: feature:15887379-15887578:1:region

Musotima nitidalis genome assembly, chromosome: 22.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 22.
sequence version: OX421435.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14672933
topology: linear
RO_0000086: SO_0000987
location: 1..14672933
location: region:1-14672933:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14672933:1
position: 14672933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14672933:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 22
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13532644..13532843
location: region:13532644-13532843:1
BFO_0000051: feature:13532644-13532843:1:region
SIO_000974: f10ee5b8-65e2-4034-8184-6487d94aad1e

position:13532644:1
position: 13532644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13532843:1
position: 13532843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f10ee5b8-65e2-4034-8184-6487d94aad1e
SIO_000300: 1
SIO_000628: feature:13532644-13532843:1:region

Musotima nitidalis genome assembly, chromosome: 23.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 23.
sequence version: OX421436.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14585799
topology: linear
RO_0000086: SO_0000987
location: 1..14585799
location: region:1-14585799:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14585799:1
position: 14585799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14585799:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 23
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10651562..10651761
location: region:10651562-10651761:1
BFO_0000051: feature:10651562-10651761:1:region
SIO_000974: eb91e286-5694-4956-9b1e-3bf6da8e3c5d

position:10651562:1
position: 10651562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10651761:1
position: 10651761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eb91e286-5694-4956-9b1e-3bf6da8e3c5d
SIO_000300: 1
SIO_000628: feature:10651562-10651761:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11754808..11755007
location: region:11754808-11755007:1
BFO_0000051: feature:11754808-11755007:1:region
SIO_000974: 8ddb7b5f-00d1-45fb-9463-0cb0d14b801d

position:11754808:1
position: 11754808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11755007:1
position: 11755007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ddb7b5f-00d1-45fb-9463-0cb0d14b801d
SIO_000300: 1
SIO_000628: feature:11754808-11755007:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12523499..12523698
location: region:12523499-12523698:1
BFO_0000051: feature:12523499-12523698:1:region
SIO_000974: 89bad925-afb0-4297-91ac-36b6a2e6a0e8

position:12523499:1
position: 12523499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12523698:1
position: 12523698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

89bad925-afb0-4297-91ac-36b6a2e6a0e8
SIO_000300: 1
SIO_000628: feature:12523499-12523698:1:region

Musotima nitidalis genome assembly, chromosome: 24.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 24.
sequence version: OX421437.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 14255472
topology: linear
RO_0000086: SO_0000987
location: 1..14255472
location: region:1-14255472:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14255472:1
position: 14255472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14255472:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 24
mol type: genomic DNA

Musotima nitidalis genome assembly, chromosome: 25.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 25.
sequence version: OX421438.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13195163
topology: linear
RO_0000086: SO_0000987
location: 1..13195163
location: region:1-13195163:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13195163:1
position: 13195163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13195163:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 25
mol type: genomic DNA

Musotima nitidalis genome assembly, chromosome: 26.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 26.
sequence version: OX421439.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 13061438
topology: linear
RO_0000086: SO_0000987
location: 1..13061438
location: region:1-13061438:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13061438:1
position: 13061438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13061438:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 26
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10916886..10917085
location: region:10916886-10917085:1
BFO_0000051: feature:10916886-10917085:1:region
SIO_000974: 98b5f7d9-9186-4f26-91bb-8b920f177e2a

position:10916886:1
position: 10916886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10917085:1
position: 10917085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

98b5f7d9-9186-4f26-91bb-8b920f177e2a
SIO_000300: 1
SIO_000628: feature:10916886-10917085:1:region

Musotima nitidalis genome assembly, chromosome: 27.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 27.
sequence version: OX421440.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10857358
topology: linear
RO_0000086: SO_0000987
location: 1..10857358
location: region:1-10857358:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10857358:1
position: 10857358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10857358:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 27
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 916478..916677
location: region:916478-916677:1
BFO_0000051: feature:916478-916677:1:region
SIO_000974: 27fce350-5979-471a-8068-897ee31aa320

position:916478:1
position: 916478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:916677:1
position: 916677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27fce350-5979-471a-8068-897ee31aa320
SIO_000300: 1
SIO_000628: feature:916478-916677:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9544323..9544522
location: region:9544323-9544522:1
BFO_0000051: feature:9544323-9544522:1:region
SIO_000974: 2e546bce-a588-4065-8b62-479c48dfafe3

position:9544323:1
position: 9544323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9544522:1
position: 9544522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e546bce-a588-4065-8b62-479c48dfafe3
SIO_000300: 1
SIO_000628: feature:9544323-9544522:1:region

Musotima nitidalis genome assembly, chromosome: 28.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 28.
sequence version: OX421441.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10589701
topology: linear
RO_0000086: SO_0000987
location: 1..10589701
location: region:1-10589701:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10589701:1
position: 10589701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10589701:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 28
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4153643..4153842
location: region:4153643-4153842:1
BFO_0000051: feature:4153643-4153842:1:region
SIO_000974: 852845bb-37b8-4aa5-a297-8796faaa4803

position:4153643:1
position: 4153643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4153842:1
position: 4153842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

852845bb-37b8-4aa5-a297-8796faaa4803
SIO_000300: 1
SIO_000628: feature:4153643-4153842:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4659449..4659648
location: region:4659449-4659648:1
BFO_0000051: feature:4659449-4659648:1:region
SIO_000974: 733ca061-bd17-4767-8fdc-703e4e9e52ea

position:4659449:1
position: 4659449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4659648:1
position: 4659648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

733ca061-bd17-4767-8fdc-703e4e9e52ea
SIO_000300: 1
SIO_000628: feature:4659449-4659648:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9302471..9302670
location: region:9302471-9302670:1
BFO_0000051: feature:9302471-9302670:1:region
SIO_000974: 7bf0ff49-41d0-411e-83fe-ac14ddef6fdf

position:9302471:1
position: 9302471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9302670:1
position: 9302670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7bf0ff49-41d0-411e-83fe-ac14ddef6fdf
SIO_000300: 1
SIO_000628: feature:9302471-9302670:1:region

Musotima nitidalis genome assembly, chromosome: 29.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: 29.
sequence version: OX421442.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 10324725
topology: linear
RO_0000086: SO_0000987
location: 1..10324725
location: region:1-10324725:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10324725:1
position: 10324725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10324725:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: 29
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5734883..5735082
location: region:5734883-5735082:1
BFO_0000051: feature:5734883-5735082:1:region
SIO_000974: 9f8f0a61-ff88-4357-bbf0-43efdb60ef07

position:5734883:1
position: 5734883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5735082:1
position: 5735082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9f8f0a61-ff88-4357-bbf0-43efdb60ef07
SIO_000300: 1
SIO_000628: feature:5734883-5735082:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9171092..9171291
location: region:9171092-9171291:1
BFO_0000051: feature:9171092-9171291:1:region
SIO_000974: e1bbc63f-6254-4193-bf36-b2e28dc8771c

position:9171092:1
position: 9171092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9171291:1
position: 9171291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e1bbc63f-6254-4193-bf36-b2e28dc8771c
SIO_000300: 1
SIO_000628: feature:9171092-9171291:1:region

Musotima nitidalis genome assembly, chromosome: W.
type: Entry
definition: Musotima nitidalis genome assembly, chromosome: W.
sequence version: OX421443.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 8732090
topology: linear
RO_0000086: SO_0000987
location: 1..8732090
location: region:1-8732090:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8732090:1
position: 8732090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8732090:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3939964..3940163
location: region:3939964-3940163:1
BFO_0000051: feature:3939964-3940163:1:region
SIO_000974: 3f8a3c63-19eb-4b0b-aad7-182d1321c768

position:3939964:1
position: 3939964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3940163:1
position: 3940163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3f8a3c63-19eb-4b0b-aad7-182d1321c768
SIO_000300: 1
SIO_000628: feature:3939964-3940163:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5002529..5002728
location: region:5002529-5002728:1
BFO_0000051: feature:5002529-5002728:1:region
SIO_000974: a0ab101a-13b5-4f87-a882-7904b8502f79

position:5002529:1
position: 5002529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5002728:1
position: 5002728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0ab101a-13b5-4f87-a882-7904b8502f79
SIO_000300: 1
SIO_000628: feature:5002529-5002728:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 753371
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5059399..5059598
location: region:5059399-5059598:1
BFO_0000051: feature:5059399-5059598:1:region
SIO_000974: 486215ae-6fcc-49ac-807c-62bcedc0919e

position:5059399:1
position: 5059399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5059598:1
position: 5059598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

486215ae-6fcc-49ac-807c-62bcedc0919e
SIO_000300: 1
SIO_000628: feature:5059399-5059598:1:region

Musotima nitidalis genome assembly, organelle: mitochondrion.
type: Entry
definition: Musotima nitidalis genome assembly, organelle: mitochondrion.
sequence version: OX421444.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: mitochondrion Musotima nitidalis
organism: Musotima nitidalis
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Musotima.
reference: 1
comment: The assembly ilMusNiti1.1 is based on 45x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size.

sequence
subclass of: SO_0000001
sequence length: 15421
topology: linear
RO_0000086: SO_0000987
location: 1..15421
location: region:1-15421:1
RO_0002162: 753371

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15421:1
position: 15421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15421:1:source
BFO_0000050: sequence
organism: Musotima nitidalis
organelle: mitochondrion
mol type: genomic DNA

Montipora capitata genome assembly, chromosome: 1.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 1.
sequence version: OX421445.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 67259869
topology: linear
RO_0000086: SO_0000987
location: 1..67259869
location: region:1-67259869:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67259869:1
position: 67259869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-67259869:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 1
mol type: genomic DNA

46704
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1303001..1303200
location: region:1303001-1303200:1
BFO_0000051: feature:1303001-1303200:1:region
SIO_000974: 256ede70-ff82-4d21-8500-5c3aa1b722f5

position:1303001:1
position: 1303001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1303200:1
position: 1303200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

256ede70-ff82-4d21-8500-5c3aa1b722f5
SIO_000300: 1
SIO_000628: feature:1303001-1303200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1379340..1379539
location: region:1379340-1379539:1
BFO_0000051: feature:1379340-1379539:1:region
SIO_000974: bac27d4d-6ecd-4b91-8cdb-fc6186fb5582

position:1379340:1
position: 1379340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1379539:1
position: 1379539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bac27d4d-6ecd-4b91-8cdb-fc6186fb5582
SIO_000300: 1
SIO_000628: feature:1379340-1379539:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1445524..1445723
location: region:1445524-1445723:1
BFO_0000051: feature:1445524-1445723:1:region
SIO_000974: f5ae920d-6ffa-45ae-b7cc-fa12323d5c0b

position:1445524:1
position: 1445524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1445723:1
position: 1445723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f5ae920d-6ffa-45ae-b7cc-fa12323d5c0b
SIO_000300: 1
SIO_000628: feature:1445524-1445723:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2461830..2462029
location: region:2461830-2462029:1
BFO_0000051: feature:2461830-2462029:1:region
SIO_000974: 736ba89b-62c0-4d00-a715-5ecff45a0760

position:2461830:1
position: 2461830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2462029:1
position: 2462029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

736ba89b-62c0-4d00-a715-5ecff45a0760
SIO_000300: 1
SIO_000628: feature:2461830-2462029:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4033808..4034007
location: region:4033808-4034007:1
BFO_0000051: feature:4033808-4034007:1:region
SIO_000974: c80bf7a3-6848-404a-85c2-7d5fe7a28f86

position:4033808:1
position: 4033808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4034007:1
position: 4034007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c80bf7a3-6848-404a-85c2-7d5fe7a28f86
SIO_000300: 1
SIO_000628: feature:4033808-4034007:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5872065..5872264
location: region:5872065-5872264:1
BFO_0000051: feature:5872065-5872264:1:region
SIO_000974: f9b591f1-6c82-47f0-9b3e-3e8c83212bae

position:5872065:1
position: 5872065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5872264:1
position: 5872264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f9b591f1-6c82-47f0-9b3e-3e8c83212bae
SIO_000300: 1
SIO_000628: feature:5872065-5872264:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6220057..6220256
location: region:6220057-6220256:1
BFO_0000051: feature:6220057-6220256:1:region
SIO_000974: 5f9366ba-c7ea-4748-8d99-0440145dbebc

position:6220057:1
position: 6220057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6220256:1
position: 6220256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f9366ba-c7ea-4748-8d99-0440145dbebc
SIO_000300: 1
SIO_000628: feature:6220057-6220256:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6937029..6937228
location: region:6937029-6937228:1
BFO_0000051: feature:6937029-6937228:1:region
SIO_000974: 473c72f6-c636-4326-aa10-f07299a10041

position:6937029:1
position: 6937029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6937228:1
position: 6937228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

473c72f6-c636-4326-aa10-f07299a10041
SIO_000300: 1
SIO_000628: feature:6937029-6937228:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7492843..7493042
location: region:7492843-7493042:1
BFO_0000051: feature:7492843-7493042:1:region
SIO_000974: 7eaf02cb-02ae-4013-bdc2-b2e04866e488

position:7492843:1
position: 7492843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7493042:1
position: 7493042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7eaf02cb-02ae-4013-bdc2-b2e04866e488
SIO_000300: 1
SIO_000628: feature:7492843-7493042:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7745043..7745242
location: region:7745043-7745242:1
BFO_0000051: feature:7745043-7745242:1:region
SIO_000974: f68505e6-04ea-4522-b60a-e405b2214a6a

position:7745043:1
position: 7745043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7745242:1
position: 7745242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f68505e6-04ea-4522-b60a-e405b2214a6a
SIO_000300: 1
SIO_000628: feature:7745043-7745242:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9019088..9019287
location: region:9019088-9019287:1
BFO_0000051: feature:9019088-9019287:1:region
SIO_000974: e6fa62ab-a90b-4f0c-bd78-149919f6554b

position:9019088:1
position: 9019088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9019287:1
position: 9019287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6fa62ab-a90b-4f0c-bd78-149919f6554b
SIO_000300: 1
SIO_000628: feature:9019088-9019287:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9222572..9222771
location: region:9222572-9222771:1
BFO_0000051: feature:9222572-9222771:1:region
SIO_000974: fc474f19-33ed-4d4c-821d-1f1e78b3c889

position:9222572:1
position: 9222572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9222771:1
position: 9222771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc474f19-33ed-4d4c-821d-1f1e78b3c889
SIO_000300: 1
SIO_000628: feature:9222572-9222771:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10215830..10216029
location: region:10215830-10216029:1
BFO_0000051: feature:10215830-10216029:1:region
SIO_000974: 4b701031-ef69-4197-8135-61910c396d26

position:10215830:1
position: 10215830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10216029:1
position: 10216029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b701031-ef69-4197-8135-61910c396d26
SIO_000300: 1
SIO_000628: feature:10215830-10216029:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11175997..11176196
location: region:11175997-11176196:1
BFO_0000051: feature:11175997-11176196:1:region
SIO_000974: 8de0bab4-8a28-48c9-87e0-dad7b5346078

position:11175997:1
position: 11175997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11176196:1
position: 11176196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8de0bab4-8a28-48c9-87e0-dad7b5346078
SIO_000300: 1
SIO_000628: feature:11175997-11176196:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13062090..13062289
location: region:13062090-13062289:1
BFO_0000051: feature:13062090-13062289:1:region
SIO_000974: 18136c44-f837-4e80-bc91-82beef89c0d0

position:13062090:1
position: 13062090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13062289:1
position: 13062289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18136c44-f837-4e80-bc91-82beef89c0d0
SIO_000300: 1
SIO_000628: feature:13062090-13062289:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14278316..14278515
location: region:14278316-14278515:1
BFO_0000051: feature:14278316-14278515:1:region
SIO_000974: 8b09ddfd-c35d-4904-9b2c-28f134bfdab4

position:14278316:1
position: 14278316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14278515:1
position: 14278515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8b09ddfd-c35d-4904-9b2c-28f134bfdab4
SIO_000300: 1
SIO_000628: feature:14278316-14278515:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14470825..14471024
location: region:14470825-14471024:1
BFO_0000051: feature:14470825-14471024:1:region
SIO_000974: 30cc7705-06c7-4c9b-8fac-1a7f7a7a8a82

position:14470825:1
position: 14470825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14471024:1
position: 14471024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

30cc7705-06c7-4c9b-8fac-1a7f7a7a8a82
SIO_000300: 1
SIO_000628: feature:14470825-14471024:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15292666..15292865
location: region:15292666-15292865:1
BFO_0000051: feature:15292666-15292865:1:region
SIO_000974: 72c76c12-9d44-4ce9-83a4-27317972dcaa

position:15292666:1
position: 15292666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15292865:1
position: 15292865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72c76c12-9d44-4ce9-83a4-27317972dcaa
SIO_000300: 1
SIO_000628: feature:15292666-15292865:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15812654..15812853
location: region:15812654-15812853:1
BFO_0000051: feature:15812654-15812853:1:region
SIO_000974: 8d0ca0c4-fcd9-46b7-9480-458587a0f620

position:15812654:1
position: 15812654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15812853:1
position: 15812853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d0ca0c4-fcd9-46b7-9480-458587a0f620
SIO_000300: 1
SIO_000628: feature:15812654-15812853:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16046395..16046594
location: region:16046395-16046594:1
BFO_0000051: feature:16046395-16046594:1:region
SIO_000974: e12bdbf3-5997-4621-babe-3816df96f17d

position:16046395:1
position: 16046395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16046594:1
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RO_0002162: 46704
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

35750159-8f58-4d70-8a21-e122684c04b3
SIO_000300: 1
SIO_000628: feature:65300077-65300276:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 65498707..65498906
location: region:65498707-65498906:1
BFO_0000051: feature:65498707-65498906:1:region
SIO_000974: 0a022e7e-7815-4184-9fcb-be4a4fb4cc1d

position:65498707:1
position: 65498707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65498906:1
position: 65498906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0a022e7e-7815-4184-9fcb-be4a4fb4cc1d
SIO_000300: 1
SIO_000628: feature:65498707-65498906:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 65576907..65577106
location: region:65576907-65577106:1
BFO_0000051: feature:65576907-65577106:1:region
SIO_000974: 20d8697e-170f-4b13-97f5-ebc4e9cc35ea

position:65576907:1
position: 65576907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65577106:1
position: 65577106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

20d8697e-170f-4b13-97f5-ebc4e9cc35ea
SIO_000300: 1
SIO_000628: feature:65576907-65577106:1:region

Montipora capitata genome assembly, chromosome: 2.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 2.
sequence version: OX421446.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 66624440
topology: linear
RO_0000086: SO_0000987
location: 1..66624440
location: region:1-66624440:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66624440:1
position: 66624440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-66624440:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3764931..3765130
location: region:3764931-3765130:1
BFO_0000051: feature:3764931-3765130:1:region
SIO_000974: c077527b-d71b-4395-8d84-d784ce5cc000

position:3764931:1
position: 3764931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3765130:1
position: 3765130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c077527b-d71b-4395-8d84-d784ce5cc000
SIO_000300: 1
SIO_000628: feature:3764931-3765130:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5206188..5206387
location: region:5206188-5206387:1
BFO_0000051: feature:5206188-5206387:1:region
SIO_000974: 30b1c0c2-fddc-469c-a598-9d77cd0ace1c

position:5206188:1
position: 5206188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5206387:1
position: 5206387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

30b1c0c2-fddc-469c-a598-9d77cd0ace1c
SIO_000300: 1
SIO_000628: feature:5206188-5206387:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5541000..5541199
location: region:5541000-5541199:1
BFO_0000051: feature:5541000-5541199:1:region
SIO_000974: 4b0a86ef-3621-4e56-b768-3f3b224b86b5

position:5541000:1
position: 5541000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5541199:1
position: 5541199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b0a86ef-3621-4e56-b768-3f3b224b86b5
SIO_000300: 1
SIO_000628: feature:5541000-5541199:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5783643..5783842
location: region:5783643-5783842:1
BFO_0000051: feature:5783643-5783842:1:region
SIO_000974: 4078a458-1999-4f72-9997-af1b6c60fb28

position:5783643:1
position: 5783643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5783842:1
position: 5783842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5783643-5783842:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6102122..6102321
location: region:6102122-6102321:1
BFO_0000051: feature:6102122-6102321:1:region
SIO_000974: e6b134cd-6b13-41fb-a6e2-be31e7873088

position:6102122:1
position: 6102122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6102321:1
position: 6102321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:6102122-6102321:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10664997..10665196
location: region:10664997-10665196:1
BFO_0000051: feature:10664997-10665196:1:region
SIO_000974: fce3a7d0-1654-4ac9-8d67-4de3ba102cf0

position:10664997:1
position: 10664997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10665196:1
position: 10665196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10664997-10665196:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:14417985-14418184:1
BFO_0000051: feature:14417985-14418184:1:region
SIO_000974: 29395402-687c-40d0-a036-6c51345618e7

position:14417985:1
position: 14417985
reference: sequence
type: ForwardStrandPosition
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position:14418184:1
position: 14418184
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:14417985-14418184:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:15275463-15275662:1
BFO_0000051: feature:15275463-15275662:1:region
SIO_000974: 2eec38d9-fdc3-48d2-9ccb-e4d98080daab

position:15275463:1
position: 15275463
reference: sequence
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position:15275662:1
position: 15275662
reference: sequence
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SIO_000300: 1
SIO_000628: feature:15275463-15275662:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:16423589-16423788:1
BFO_0000051: feature:16423589-16423788:1:region
SIO_000974: ac7a3983-0ec4-4552-85da-5a83923c3595

position:16423589:1
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reference: sequence
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position:16423788:1
position: 16423788
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:16423589-16423788:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:17467786-17467985:1
BFO_0000051: feature:17467786-17467985:1:region
SIO_000974: f9370fb9-5162-4d28-b57c-a72f36f67dc4

position:17467786:1
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reference: sequence
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position:17467985:1
position: 17467985
reference: sequence
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SIO_000300: 1
SIO_000628: feature:17467786-17467985:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18275344-18275543:1
BFO_0000051: feature:18275344-18275543:1:region
SIO_000974: e1acfc08-1f69-44de-8df5-05a1bc6d34c9

position:18275344:1
position: 18275344
reference: sequence
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position:18275543:1
position: 18275543
reference: sequence
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SIO_000300: 1
SIO_000628: feature:18275344-18275543:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18924218-18924417:1
BFO_0000051: feature:18924218-18924417:1:region
SIO_000974: 9519c7bf-8b9f-4e84-b92c-47377c5cbd33

position:18924218:1
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reference: sequence
type: ForwardStrandPosition
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position:18924417:1
position: 18924417
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:18924218-18924417:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:21858908-21859107:1
BFO_0000051: feature:21858908-21859107:1:region
SIO_000974: 3e1547b9-082d-47c0-a33e-cd427548d035

position:21858908:1
position: 21858908
reference: sequence
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position: 21859107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:21858908-21859107:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:22527355-22527554:1
BFO_0000051: feature:22527355-22527554:1:region
SIO_000974: 9639855a-8642-47dc-8e61-adde48611373

position:22527355:1
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reference: sequence
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position: 22527554
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:22527355-22527554:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:24668056-24668255:1
BFO_0000051: feature:24668056-24668255:1:region
SIO_000974: a2f031b7-0b10-45f9-8618-f1df57657a17

position:24668056:1
position: 24668056
reference: sequence
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position:24668255:1
position: 24668255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2f031b7-0b10-45f9-8618-f1df57657a17
SIO_000300: 1
SIO_000628: feature:24668056-24668255:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25820085..25820284
location: region:25820085-25820284:1
BFO_0000051: feature:25820085-25820284:1:region
SIO_000974: bb6d5c3d-4527-422e-862b-2043ee1e9386

position:25820085:1
position: 25820085
reference: sequence
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position:25820284:1
position: 25820284
reference: sequence
type: ForwardStrandPosition
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bb6d5c3d-4527-422e-862b-2043ee1e9386
SIO_000300: 1
SIO_000628: feature:25820085-25820284:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31678125..31678324
location: region:31678125-31678324:1
BFO_0000051: feature:31678125-31678324:1:region
SIO_000974: a5307000-9c78-42b8-b805-a09201ccaa1b

position:31678125:1
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reference: sequence
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position:31678324:1
position: 31678324
reference: sequence
type: ForwardStrandPosition
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a5307000-9c78-42b8-b805-a09201ccaa1b
SIO_000300: 1
SIO_000628: feature:31678125-31678324:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:31777780-31777979:1
BFO_0000051: feature:31777780-31777979:1:region
SIO_000974: 67340987-c5a0-43d4-8661-9894e356ec8b

position:31777780:1
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reference: sequence
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position: 31777979
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:31777780-31777979:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:34027092-34027291:1
BFO_0000051: feature:34027092-34027291:1:region
SIO_000974: 2607b9f0-fa7c-4a04-bd04-34aa6a58540b

position:34027092:1
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reference: sequence
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position: 34027291
reference: sequence
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2607b9f0-fa7c-4a04-bd04-34aa6a58540b
SIO_000300: 1
SIO_000628: feature:34027092-34027291:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34643907..34644106
location: region:34643907-34644106:1
BFO_0000051: feature:34643907-34644106:1:region
SIO_000974: be23b2c9-1d15-42d7-85ec-22eb7923ac19

position:34643907:1
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reference: sequence
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position:34644106:1
position: 34644106
reference: sequence
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SIO_000300: 1
SIO_000628: feature:34643907-34644106:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:34830413-34830612:1
BFO_0000051: feature:34830413-34830612:1:region
SIO_000974: ab5313ac-cdb2-40f5-b3c0-e3c9d4c62762

position:34830413:1
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reference: sequence
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position:34830612:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:34830413-34830612:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:35360374-35360573:1
BFO_0000051: feature:35360374-35360573:1:region
SIO_000974: 2e2f40a3-996a-43dd-823d-5501eef15a46

position:35360374:1
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reference: sequence
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position:35360573:1
position: 35360573
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:35360374-35360573:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:38626125-38626324:1
BFO_0000051: feature:38626125-38626324:1:region
SIO_000974: 6c407e5a-7f39-4f3b-b8a9-ed665562e471

position:38626125:1
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reference: sequence
type: ForwardStrandPosition
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:38626125-38626324:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:39820951-39821150:1
BFO_0000051: feature:39820951-39821150:1:region
SIO_000974: 035f8d14-e7d1-4ca9-8429-558e48074a97

position:39820951:1
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reference: sequence
type: ForwardStrandPosition
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position:39821150:1
position: 39821150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39820951-39821150:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43222073..43222272
location: region:43222073-43222272:1
BFO_0000051: feature:43222073-43222272:1:region
SIO_000974: 2bad5727-8d09-4cb7-b65b-531069f09a77

position:43222073:1
position: 43222073
reference: sequence
type: ForwardStrandPosition
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position:43222272:1
position: 43222272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:43222073-43222272:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44014409..44014608
location: region:44014409-44014608:1
BFO_0000051: feature:44014409-44014608:1:region
SIO_000974: b046fb1d-36fe-440d-8fcf-a2ee1e80ebb6

position:44014409:1
position: 44014409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44014608:1
position: 44014608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b046fb1d-36fe-440d-8fcf-a2ee1e80ebb6
SIO_000300: 1
SIO_000628: feature:44014409-44014608:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45572374..45572573
location: region:45572374-45572573:1
BFO_0000051: feature:45572374-45572573:1:region
SIO_000974: afe2f2fc-ac77-4af3-86d1-9fd99047c789

position:45572374:1
position: 45572374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45572573:1
position: 45572573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

afe2f2fc-ac77-4af3-86d1-9fd99047c789
SIO_000300: 1
SIO_000628: feature:45572374-45572573:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45832724..45832923
location: region:45832724-45832923:1
BFO_0000051: feature:45832724-45832923:1:region
SIO_000974: 715304b9-01b4-42f2-b3d7-c35d39db4323

position:45832724:1
position: 45832724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45832923:1
position: 45832923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

715304b9-01b4-42f2-b3d7-c35d39db4323
SIO_000300: 1
SIO_000628: feature:45832724-45832923:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46076331..46076530
location: region:46076331-46076530:1
BFO_0000051: feature:46076331-46076530:1:region
SIO_000974: 18e59a94-f43a-476f-9b81-4007b6a8489b

position:46076331:1
position: 46076331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46076530:1
position: 46076530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

18e59a94-f43a-476f-9b81-4007b6a8489b
SIO_000300: 1
SIO_000628: feature:46076331-46076530:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46345762..46345961
location: region:46345762-46345961:1
BFO_0000051: feature:46345762-46345961:1:region
SIO_000974: e6069098-6579-44f0-b19c-c51fe5916916

position:46345762:1
position: 46345762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46345961:1
position: 46345961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6069098-6579-44f0-b19c-c51fe5916916
SIO_000300: 1
SIO_000628: feature:46345762-46345961:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46425528..46425727
location: region:46425528-46425727:1
BFO_0000051: feature:46425528-46425727:1:region
SIO_000974: 2385087f-e0af-424b-9ac1-875938e68155

position:46425528:1
position: 46425528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46425727:1
position: 46425727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2385087f-e0af-424b-9ac1-875938e68155
SIO_000300: 1
SIO_000628: feature:46425528-46425727:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47026094..47026293
location: region:47026094-47026293:1
BFO_0000051: feature:47026094-47026293:1:region
SIO_000974: 8ffeaf4c-f67b-4bc6-96a7-37b1c5d76d68

position:47026094:1
position: 47026094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47026293:1
position: 47026293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ffeaf4c-f67b-4bc6-96a7-37b1c5d76d68
SIO_000300: 1
SIO_000628: feature:47026094-47026293:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47529261..47529460
location: region:47529261-47529460:1
BFO_0000051: feature:47529261-47529460:1:region
SIO_000974: d040b93a-9db8-42dd-b690-a5753808941a

position:47529261:1
position: 47529261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47529460:1
position: 47529460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d040b93a-9db8-42dd-b690-a5753808941a
SIO_000300: 1
SIO_000628: feature:47529261-47529460:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 47808386..47808585
location: region:47808386-47808585:1
BFO_0000051: feature:47808386-47808585:1:region
SIO_000974: db26160d-3fe1-40ea-8403-3bbe0fe377f1

position:47808386:1
position: 47808386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47808585:1
position: 47808585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db26160d-3fe1-40ea-8403-3bbe0fe377f1
SIO_000300: 1
SIO_000628: feature:47808386-47808585:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49370937..49371136
location: region:49370937-49371136:1
BFO_0000051: feature:49370937-49371136:1:region
SIO_000974: 9b8b76f8-b9e9-4b29-b4df-fef95715da47

position:49370937:1
position: 49370937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49371136:1
position: 49371136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b8b76f8-b9e9-4b29-b4df-fef95715da47
SIO_000300: 1
SIO_000628: feature:49370937-49371136:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49488280..49488479
location: region:49488280-49488479:1
BFO_0000051: feature:49488280-49488479:1:region
SIO_000974: bbbae4f4-6084-4af1-b65f-4034f8659bb0

position:49488280:1
position: 49488280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49488479:1
position: 49488479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bbbae4f4-6084-4af1-b65f-4034f8659bb0
SIO_000300: 1
SIO_000628: feature:49488280-49488479:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 54138852..54139051
location: region:54138852-54139051:1
BFO_0000051: feature:54138852-54139051:1:region
SIO_000974: edb5790d-a5a2-4a77-afe7-fe8b3c09c908

position:54138852:1
position: 54138852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54139051:1
position: 54139051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

edb5790d-a5a2-4a77-afe7-fe8b3c09c908
SIO_000300: 1
SIO_000628: feature:54138852-54139051:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57640022..57640221
location: region:57640022-57640221:1
BFO_0000051: feature:57640022-57640221:1:region
SIO_000974: 1bbeeb50-b85f-431f-8e71-75d2c49f100a

position:57640022:1
position: 57640022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57640221:1
position: 57640221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1bbeeb50-b85f-431f-8e71-75d2c49f100a
SIO_000300: 1
SIO_000628: feature:57640022-57640221:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 57690615..57690814
location: region:57690615-57690814:1
BFO_0000051: feature:57690615-57690814:1:region
SIO_000974: 5312d113-c06d-4321-b94a-89599e879a7d

position:57690615:1
position: 57690615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57690814:1
position: 57690814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5312d113-c06d-4321-b94a-89599e879a7d
SIO_000300: 1
SIO_000628: feature:57690615-57690814:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58887551..58887750
location: region:58887551-58887750:1
BFO_0000051: feature:58887551-58887750:1:region
SIO_000974: 8018adfc-cea1-4a7d-9a18-cc056609be27

position:58887551:1
position: 58887551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58887750:1
position: 58887750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8018adfc-cea1-4a7d-9a18-cc056609be27
SIO_000300: 1
SIO_000628: feature:58887551-58887750:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58991984..58992183
location: region:58991984-58992183:1
BFO_0000051: feature:58991984-58992183:1:region
SIO_000974: 101056ae-0066-4332-8d10-2d6e565be9c1

position:58991984:1
position: 58991984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58992183:1
position: 58992183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

101056ae-0066-4332-8d10-2d6e565be9c1
SIO_000300: 1
SIO_000628: feature:58991984-58992183:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59399152..59399351
location: region:59399152-59399351:1
BFO_0000051: feature:59399152-59399351:1:region
SIO_000974: 173bdb86-c0ea-43b9-9e47-b41a4ec2f454

position:59399152:1
position: 59399152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59399351:1
position: 59399351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

173bdb86-c0ea-43b9-9e47-b41a4ec2f454
SIO_000300: 1
SIO_000628: feature:59399152-59399351:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 60951038..60951237
location: region:60951038-60951237:1
BFO_0000051: feature:60951038-60951237:1:region
SIO_000974: 03a7abcd-f0c8-44d9-95a6-bdb68cef616c

position:60951038:1
position: 60951038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60951237:1
position: 60951237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03a7abcd-f0c8-44d9-95a6-bdb68cef616c
SIO_000300: 1
SIO_000628: feature:60951038-60951237:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61125496..61125695
location: region:61125496-61125695:1
BFO_0000051: feature:61125496-61125695:1:region
SIO_000974: 6d256d44-4adb-4ebd-815a-1af2b58fe9cc

position:61125496:1
position: 61125496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61125695:1
position: 61125695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d256d44-4adb-4ebd-815a-1af2b58fe9cc
SIO_000300: 1
SIO_000628: feature:61125496-61125695:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61660107..61660306
location: region:61660107-61660306:1
BFO_0000051: feature:61660107-61660306:1:region
SIO_000974: 51bd3496-c836-474f-a32e-47c96d95a8b7

position:61660107:1
position: 61660107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61660306:1
position: 61660306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51bd3496-c836-474f-a32e-47c96d95a8b7
SIO_000300: 1
SIO_000628: feature:61660107-61660306:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63992246..63992445
location: region:63992246-63992445:1
BFO_0000051: feature:63992246-63992445:1:region
SIO_000974: 0fd9fd82-0da2-4098-b51f-e9b47eae15ec

position:63992246:1
position: 63992246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63992445:1
position: 63992445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0fd9fd82-0da2-4098-b51f-e9b47eae15ec
SIO_000300: 1
SIO_000628: feature:63992246-63992445:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 66373732..66373931
location: region:66373732-66373931:1
BFO_0000051: feature:66373732-66373931:1:region
SIO_000974: 593fc599-17bb-4f7c-bb74-9ff14fd0c39c

position:66373732:1
position: 66373732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66373931:1
position: 66373931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

593fc599-17bb-4f7c-bb74-9ff14fd0c39c
SIO_000300: 1
SIO_000628: feature:66373732-66373931:1:region

Montipora capitata genome assembly, chromosome: 3.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 3.
sequence version: OX421447.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 65466317
topology: linear
RO_0000086: SO_0000987
location: 1..65466317
location: region:1-65466317:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65466317:1
position: 65466317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-65466317:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2938708..2938907
location: region:2938708-2938907:1
BFO_0000051: feature:2938708-2938907:1:region
SIO_000974: ab52e817-7d3b-4fc7-abea-4f417f3b0d1e

position:2938708:1
position: 2938708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2938907:1
position: 2938907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab52e817-7d3b-4fc7-abea-4f417f3b0d1e
SIO_000300: 1
SIO_000628: feature:2938708-2938907:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6605344..6605543
location: region:6605344-6605543:1
BFO_0000051: feature:6605344-6605543:1:region
SIO_000974: 0b46e29a-3a89-4567-b978-4ebd5979f60b

position:6605344:1
position: 6605344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6605543:1
position: 6605543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0b46e29a-3a89-4567-b978-4ebd5979f60b
SIO_000300: 1
SIO_000628: feature:6605344-6605543:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7476168..7476367
location: region:7476168-7476367:1
BFO_0000051: feature:7476168-7476367:1:region
SIO_000974: 5f4e4eaa-25bc-4457-b4bf-1db40ce8dc89

position:7476168:1
position: 7476168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7476367:1
position: 7476367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5f4e4eaa-25bc-4457-b4bf-1db40ce8dc89
SIO_000300: 1
SIO_000628: feature:7476168-7476367:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8131368..8131567
location: region:8131368-8131567:1
BFO_0000051: feature:8131368-8131567:1:region
SIO_000974: 21dce6fc-6406-4743-bf67-09bb58a3cd7c

position:8131368:1
position: 8131368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8131567:1
position: 8131567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21dce6fc-6406-4743-bf67-09bb58a3cd7c
SIO_000300: 1
SIO_000628: feature:8131368-8131567:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8705429..8705628
location: region:8705429-8705628:1
BFO_0000051: feature:8705429-8705628:1:region
SIO_000974: caf126db-0efa-4229-8cfb-38f659caa82c

position:8705429:1
position: 8705429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8705628:1
position: 8705628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

caf126db-0efa-4229-8cfb-38f659caa82c
SIO_000300: 1
SIO_000628: feature:8705429-8705628:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9706024..9706223
location: region:9706024-9706223:1
BFO_0000051: feature:9706024-9706223:1:region
SIO_000974: 9bf5462d-94f1-4c18-bbf7-6a86db8ea81e

position:9706024:1
position: 9706024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9706223:1
position: 9706223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9bf5462d-94f1-4c18-bbf7-6a86db8ea81e
SIO_000300: 1
SIO_000628: feature:9706024-9706223:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10008897..10009096
location: region:10008897-10009096:1
BFO_0000051: feature:10008897-10009096:1:region
SIO_000974: eca135df-405c-44ca-bfeb-05a6c1f76f35

position:10008897:1
position: 10008897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10009096:1
position: 10009096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eca135df-405c-44ca-bfeb-05a6c1f76f35
SIO_000300: 1
SIO_000628: feature:10008897-10009096:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10461374..10461573
location: region:10461374-10461573:1
BFO_0000051: feature:10461374-10461573:1:region
SIO_000974: b47c589d-e97e-4599-9dfe-485876b6722f

position:10461374:1
position: 10461374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10461573:1
position: 10461573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b47c589d-e97e-4599-9dfe-485876b6722f
SIO_000300: 1
SIO_000628: feature:10461374-10461573:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13807824..13808023
location: region:13807824-13808023:1
BFO_0000051: feature:13807824-13808023:1:region
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position:13807824:1
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RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58144357..58144556
location: region:58144357-58144556:1
BFO_0000051: feature:58144357-58144556:1:region
SIO_000974: 6635c17d-129d-4044-a357-6d71e6161cc6

position:58144357:1
position: 58144357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58144556:1
position: 58144556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6635c17d-129d-4044-a357-6d71e6161cc6
SIO_000300: 1
SIO_000628: feature:58144357-58144556:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59199148..59199347
location: region:59199148-59199347:1
BFO_0000051: feature:59199148-59199347:1:region
SIO_000974: 2a8583e6-b5dc-429d-b214-12c63034b006

position:59199148:1
position: 59199148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59199347:1
position: 59199347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a8583e6-b5dc-429d-b214-12c63034b006
SIO_000300: 1
SIO_000628: feature:59199148-59199347:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59221144..59221343
location: region:59221144-59221343:1
BFO_0000051: feature:59221144-59221343:1:region
SIO_000974: 1f7f055f-989b-490f-8f32-513ad088b251

position:59221144:1
position: 59221144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59221343:1
position: 59221343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1f7f055f-989b-490f-8f32-513ad088b251
SIO_000300: 1
SIO_000628: feature:59221144-59221343:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61894299..61894498
location: region:61894299-61894498:1
BFO_0000051: feature:61894299-61894498:1:region
SIO_000974: 2cf67b05-510d-4919-8ac2-bebd52fd7c5d

position:61894299:1
position: 61894299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61894498:1
position: 61894498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2cf67b05-510d-4919-8ac2-bebd52fd7c5d
SIO_000300: 1
SIO_000628: feature:61894299-61894498:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63512860..63513059
location: region:63512860-63513059:1
BFO_0000051: feature:63512860-63513059:1:region
SIO_000974: 5ef69466-7c94-466b-ac32-28ac97077dfa

position:63512860:1
position: 63512860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63513059:1
position: 63513059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ef69466-7c94-466b-ac32-28ac97077dfa
SIO_000300: 1
SIO_000628: feature:63512860-63513059:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63569137..63569336
location: region:63569137-63569336:1
BFO_0000051: feature:63569137-63569336:1:region
SIO_000974: 3d882453-e415-4549-81f7-db73ec0d0a47

position:63569137:1
position: 63569137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63569336:1
position: 63569336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3d882453-e415-4549-81f7-db73ec0d0a47
SIO_000300: 1
SIO_000628: feature:63569137-63569336:1:region

Montipora capitata genome assembly, chromosome: 4.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 4.
sequence version: OX421448.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 63882088
topology: linear
RO_0000086: SO_0000987
location: 1..63882088
location: region:1-63882088:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63882088:1
position: 63882088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-63882088:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4897001..4897200
location: region:4897001-4897200:1
BFO_0000051: feature:4897001-4897200:1:region
SIO_000974: c132cb8d-0295-4b16-b2f6-c6d3be4af4b1

position:4897001:1
position: 4897001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4897200:1
position: 4897200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c132cb8d-0295-4b16-b2f6-c6d3be4af4b1
SIO_000300: 1
SIO_000628: feature:4897001-4897200:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6944704..6944903
location: region:6944704-6944903:1
BFO_0000051: feature:6944704-6944903:1:region
SIO_000974: 4b46afce-953a-4c22-8fc6-d33083ae0ff4

position:6944704:1
position: 6944704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6944903:1
position: 6944903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b46afce-953a-4c22-8fc6-d33083ae0ff4
SIO_000300: 1
SIO_000628: feature:6944704-6944903:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7038148..7038347
location: region:7038148-7038347:1
BFO_0000051: feature:7038148-7038347:1:region
SIO_000974: 76c1f486-9891-42bd-88c7-3e99ff01c0fa

position:7038148:1
position: 7038148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7038347:1
position: 7038347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76c1f486-9891-42bd-88c7-3e99ff01c0fa
SIO_000300: 1
SIO_000628: feature:7038148-7038347:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8548716..8548915
location: region:8548716-8548915:1
BFO_0000051: feature:8548716-8548915:1:region
SIO_000974: 6a033843-a581-4394-8f31-cc4f7d44f3f1

position:8548716:1
position: 8548716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8548915:1
position: 8548915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6a033843-a581-4394-8f31-cc4f7d44f3f1
SIO_000300: 1
SIO_000628: feature:8548716-8548915:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8757318..8757517
location: region:8757318-8757517:1
BFO_0000051: feature:8757318-8757517:1:region
SIO_000974: ebe305a4-b095-4d19-a9c7-4b5df1a1cd70

position:8757318:1
position: 8757318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8757517:1
position: 8757517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ebe305a4-b095-4d19-a9c7-4b5df1a1cd70
SIO_000300: 1
SIO_000628: feature:8757318-8757517:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8803192..8803391
location: region:8803192-8803391:1
BFO_0000051: feature:8803192-8803391:1:region
SIO_000974: 27f7f002-54a4-48cc-b4da-7643c6d56bd1

position:8803192:1
position: 8803192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8803391:1
position: 8803391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

27f7f002-54a4-48cc-b4da-7643c6d56bd1
SIO_000300: 1
SIO_000628: feature:8803192-8803391:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9327097..9327296
location: region:9327097-9327296:1
BFO_0000051: feature:9327097-9327296:1:region
SIO_000974: 08aee222-d1a6-4675-a42d-61e217bc4351

position:9327097:1
position: 9327097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9327296:1
position: 9327296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

08aee222-d1a6-4675-a42d-61e217bc4351
SIO_000300: 1
SIO_000628: feature:9327097-9327296:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9879799..9879998
location: region:9879799-9879998:1
BFO_0000051: feature:9879799-9879998:1:region
SIO_000974: a5ea87fd-f60c-4ae9-9de5-10e29537b255

position:9879799:1
position: 9879799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9879998:1
position: 9879998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5ea87fd-f60c-4ae9-9de5-10e29537b255
SIO_000300: 1
SIO_000628: feature:9879799-9879998:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10681659..10681858
location: region:10681659-10681858:1
BFO_0000051: feature:10681659-10681858:1:region
SIO_000974: aaa70c91-4ec0-4611-94d8-d6c3c2167743

position:10681659:1
position: 10681659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10681858:1
position: 10681858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aaa70c91-4ec0-4611-94d8-d6c3c2167743
SIO_000300: 1
SIO_000628: feature:10681659-10681858:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11087703..11087902
location: region:11087703-11087902:1
BFO_0000051: feature:11087703-11087902:1:region
SIO_000974: d911da58-77d6-4bb3-99e1-bd3ce1bd65e2

position:11087703:1
position: 11087703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11087902:1
position: 11087902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d911da58-77d6-4bb3-99e1-bd3ce1bd65e2
SIO_000300: 1
SIO_000628: feature:11087703-11087902:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11290586..11290785
location: region:11290586-11290785:1
BFO_0000051: feature:11290586-11290785:1:region
SIO_000974: db2bd8ad-4a32-423c-a20d-f4ae8f8fcbee

position:11290586:1
position: 11290586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11290785:1
position: 11290785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db2bd8ad-4a32-423c-a20d-f4ae8f8fcbee
SIO_000300: 1
SIO_000628: feature:11290586-11290785:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11570940..11571139
location: region:11570940-11571139:1
BFO_0000051: feature:11570940-11571139:1:region
SIO_000974: 92c70f18-f71d-44fc-9765-a865aa6c272a

position:11570940:1
position: 11570940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11571139:1
position: 11571139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92c70f18-f71d-44fc-9765-a865aa6c272a
SIO_000300: 1
SIO_000628: feature:11570940-11571139:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12030959..12031158
location: region:12030959-12031158:1
BFO_0000051: feature:12030959-12031158:1:region
SIO_000974: 9ee7057e-71cd-4771-b6b0-5b517632b58a

position:12030959:1
position: 12030959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12031158:1
position: 12031158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9ee7057e-71cd-4771-b6b0-5b517632b58a
SIO_000300: 1
SIO_000628: feature:12030959-12031158:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12571287..12571486
location: region:12571287-12571486:1
BFO_0000051: feature:12571287-12571486:1:region
SIO_000974: 4ffe8da6-424b-43c9-abe7-be7b9c589ea2

position:12571287:1
position: 12571287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12571486:1
position: 12571486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4ffe8da6-424b-43c9-abe7-be7b9c589ea2
SIO_000300: 1
SIO_000628: feature:12571287-12571486:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13593037..13593236
location: region:13593037-13593236:1
BFO_0000051: feature:13593037-13593236:1:region
SIO_000974: 8ff55f2c-35fb-4aa7-b4e2-e99575a3a88b

position:13593037:1
position: 13593037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13593236:1
position: 13593236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8ff55f2c-35fb-4aa7-b4e2-e99575a3a88b
SIO_000300: 1
SIO_000628: feature:13593037-13593236:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13743080..13743279
location: region:13743080-13743279:1
BFO_0000051: feature:13743080-13743279:1:region
SIO_000974: 877f8819-9b46-46b0-a398-268487777cb4

position:13743080:1
position: 13743080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13743279:1
position: 13743279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

877f8819-9b46-46b0-a398-268487777cb4
SIO_000300: 1
SIO_000628: feature:13743080-13743279:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14755601..14755800
location: region:14755601-14755800:1
BFO_0000051: feature:14755601-14755800:1:region
SIO_000974: c651cab7-f200-4105-85d7-a21a4c611e98

position:14755601:1
position: 14755601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14755800:1
position: 14755800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c651cab7-f200-4105-85d7-a21a4c611e98
SIO_000300: 1
SIO_000628: feature:14755601-14755800:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17924275..17924474
location: region:17924275-17924474:1
BFO_0000051: feature:17924275-17924474:1:region
SIO_000974: d771827c-d87a-42c4-9dfa-1dafb586247d

position:17924275:1
position: 17924275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17924474:1
position: 17924474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d771827c-d87a-42c4-9dfa-1dafb586247d
SIO_000300: 1
SIO_000628: feature:17924275-17924474:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17985430..17985629
location: region:17985430-17985629:1
BFO_0000051: feature:17985430-17985629:1:region
SIO_000974: 86965553-efd7-487f-b508-36670cb21b5c

position:17985430:1
position: 17985430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17985629:1
position: 17985629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86965553-efd7-487f-b508-36670cb21b5c
SIO_000300: 1
SIO_000628: feature:17985430-17985629:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18213630..18213829
location: region:18213630-18213829:1
BFO_0000051: feature:18213630-18213829:1:region
SIO_000974: 0239d6b2-cb38-42a6-b002-65475014b0b7

position:18213630:1
position: 18213630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18213829:1
position: 18213829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0239d6b2-cb38-42a6-b002-65475014b0b7
SIO_000300: 1
SIO_000628: feature:18213630-18213829:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19256491..19256690
location: region:19256491-19256690:1
BFO_0000051: feature:19256491-19256690:1:region
SIO_000974: 23e20eec-3538-4259-9221-d48bb6cb89e6

position:19256491:1
position: 19256491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19256690:1
position: 19256690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

23e20eec-3538-4259-9221-d48bb6cb89e6
SIO_000300: 1
SIO_000628: feature:19256491-19256690:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21775833..21776032
location: region:21775833-21776032:1
BFO_0000051: feature:21775833-21776032:1:region
SIO_000974: 57755943-96fd-4730-bdb0-2117d239d7e2

position:21775833:1
position: 21775833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21776032:1
position: 21776032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57755943-96fd-4730-bdb0-2117d239d7e2
SIO_000300: 1
SIO_000628: feature:21775833-21776032:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22826033..22826232
location: region:22826033-22826232:1
BFO_0000051: feature:22826033-22826232:1:region
SIO_000974: e5d05b52-95b2-40aa-a948-b82d71288038

position:22826033:1
position: 22826033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22826232:1
position: 22826232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5d05b52-95b2-40aa-a948-b82d71288038
SIO_000300: 1
SIO_000628: feature:22826033-22826232:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23023146..23023345
location: region:23023146-23023345:1
BFO_0000051: feature:23023146-23023345:1:region
SIO_000974: 5e243afe-46cb-4b45-a596-44676ac588c4

position:23023146:1
position: 23023146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23023345:1
position: 23023345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5e243afe-46cb-4b45-a596-44676ac588c4
SIO_000300: 1
SIO_000628: feature:23023146-23023345:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27149061..27149260
location: region:27149061-27149260:1
BFO_0000051: feature:27149061-27149260:1:region
SIO_000974: a2ae2ca5-e09a-4112-bb4c-c21c25c67e12

position:27149061:1
position: 27149061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27149260:1
position: 27149260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2ae2ca5-e09a-4112-bb4c-c21c25c67e12
SIO_000300: 1
SIO_000628: feature:27149061-27149260:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32284175..32284374
location: region:32284175-32284374:1
BFO_0000051: feature:32284175-32284374:1:region
SIO_000974: 34e09fa4-70d5-48e6-91f3-29a2210d4ca5

position:32284175:1
position: 32284175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32284374:1
position: 32284374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

34e09fa4-70d5-48e6-91f3-29a2210d4ca5
SIO_000300: 1
SIO_000628: feature:32284175-32284374:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33143375..33143574
location: region:33143375-33143574:1
BFO_0000051: feature:33143375-33143574:1:region
SIO_000974: 29c3ee6d-d6be-4460-afe1-5169267917df

position:33143375:1
position: 33143375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33143574:1
position: 33143574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

29c3ee6d-d6be-4460-afe1-5169267917df
SIO_000300: 1
SIO_000628: feature:33143375-33143574:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39188214..39188413
location: region:39188214-39188413:1
BFO_0000051: feature:39188214-39188413:1:region
SIO_000974: 2a757c87-2be8-441b-a3bb-28691eb09c7a

position:39188214:1
position: 39188214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39188413:1
position: 39188413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a757c87-2be8-441b-a3bb-28691eb09c7a
SIO_000300: 1
SIO_000628: feature:39188214-39188413:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39840941..39841140
location: region:39840941-39841140:1
BFO_0000051: feature:39840941-39841140:1:region
SIO_000974: db503866-99ff-489d-9d84-428b389870a6

position:39840941:1
position: 39840941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39841140:1
position: 39841140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

db503866-99ff-489d-9d84-428b389870a6
SIO_000300: 1
SIO_000628: feature:39840941-39841140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39919886..39920085
location: region:39919886-39920085:1
BFO_0000051: feature:39919886-39920085:1:region
SIO_000974: 01d6a9a4-cf0f-4d01-b8fd-11b48c5acae8

position:39919886:1
position: 39919886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39920085:1
position: 39920085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

01d6a9a4-cf0f-4d01-b8fd-11b48c5acae8
SIO_000300: 1
SIO_000628: feature:39919886-39920085:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40747614..40747813
location: region:40747614-40747813:1
BFO_0000051: feature:40747614-40747813:1:region
SIO_000974: 6d6c3c17-0ebd-4996-aa03-fe1966ec53ab

position:40747614:1
position: 40747614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40747813:1
position: 40747813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6d6c3c17-0ebd-4996-aa03-fe1966ec53ab
SIO_000300: 1
SIO_000628: feature:40747614-40747813:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44428783..44428982
location: region:44428783-44428982:1
BFO_0000051: feature:44428783-44428982:1:region
SIO_000974: 8717f0e7-29e6-4f15-ac8c-f14246f5eaf6

position:44428783:1
position: 44428783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44428982:1
position: 44428982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8717f0e7-29e6-4f15-ac8c-f14246f5eaf6
SIO_000300: 1
SIO_000628: feature:44428783-44428982:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45815992..45816191
location: region:45815992-45816191:1
BFO_0000051: feature:45815992-45816191:1:region
SIO_000974: 7b33b724-4b31-4df8-9dac-c81b1c7b4e78

position:45815992:1
position: 45815992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45816191:1
position: 45816191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7b33b724-4b31-4df8-9dac-c81b1c7b4e78
SIO_000300: 1
SIO_000628: feature:45815992-45816191:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45972192..45972391
location: region:45972192-45972391:1
BFO_0000051: feature:45972192-45972391:1:region
SIO_000974: 756f0727-3372-4feb-a8d4-58b20188bc5f

position:45972192:1
position: 45972192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45972391:1
position: 45972391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

756f0727-3372-4feb-a8d4-58b20188bc5f
SIO_000300: 1
SIO_000628: feature:45972192-45972391:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49269770..49269969
location: region:49269770-49269969:1
BFO_0000051: feature:49269770-49269969:1:region
SIO_000974: a93ea842-27f3-459e-83a1-45d3f48a45dd

position:49269770:1
position: 49269770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49269969:1
position: 49269969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a93ea842-27f3-459e-83a1-45d3f48a45dd
SIO_000300: 1
SIO_000628: feature:49269770-49269969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50687396..50687595
location: region:50687396-50687595:1
BFO_0000051: feature:50687396-50687595:1:region
SIO_000974: e91a8183-6e6e-4048-9ed4-37a0a15c1bd2

position:50687396:1
position: 50687396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50687595:1
position: 50687595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e91a8183-6e6e-4048-9ed4-37a0a15c1bd2
SIO_000300: 1
SIO_000628: feature:50687396-50687595:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50744499..50744698
location: region:50744499-50744698:1
BFO_0000051: feature:50744499-50744698:1:region
SIO_000974: 9e62be4c-6066-413b-9854-534bda745706

position:50744499:1
position: 50744499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50744698:1
position: 50744698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9e62be4c-6066-413b-9854-534bda745706
SIO_000300: 1
SIO_000628: feature:50744499-50744698:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52838278..52838477
location: region:52838278-52838477:1
BFO_0000051: feature:52838278-52838477:1:region
SIO_000974: 65323f8c-678e-488e-ae22-dd8f60d5acc5

position:52838278:1
position: 52838278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52838477:1
position: 52838477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

65323f8c-678e-488e-ae22-dd8f60d5acc5
SIO_000300: 1
SIO_000628: feature:52838278-52838477:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 53428522..53428721
location: region:53428522-53428721:1
BFO_0000051: feature:53428522-53428721:1:region
SIO_000974: ef67950e-3142-40ea-ad09-63200b8c13ef

position:53428522:1
position: 53428522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53428721:1
position: 53428721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ef67950e-3142-40ea-ad09-63200b8c13ef
SIO_000300: 1
SIO_000628: feature:53428522-53428721:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 56213530..56213729
location: region:56213530-56213729:1
BFO_0000051: feature:56213530-56213729:1:region
SIO_000974: 357521db-e921-4659-a205-de54fc8ee4cc

position:56213530:1
position: 56213530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56213729:1
position: 56213729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

357521db-e921-4659-a205-de54fc8ee4cc
SIO_000300: 1
SIO_000628: feature:56213530-56213729:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58129081..58129280
location: region:58129081-58129280:1
BFO_0000051: feature:58129081-58129280:1:region
SIO_000974: 9a38190b-225a-4ef9-bd18-49cd3ad67ea1

position:58129081:1
position: 58129081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58129280:1
position: 58129280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a38190b-225a-4ef9-bd18-49cd3ad67ea1
SIO_000300: 1
SIO_000628: feature:58129081-58129280:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 58520228..58520427
location: region:58520228-58520427:1
BFO_0000051: feature:58520228-58520427:1:region
SIO_000974: 17812318-b9f6-41c5-b55f-a73b552c5064

position:58520228:1
position: 58520228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58520427:1
position: 58520427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

17812318-b9f6-41c5-b55f-a73b552c5064
SIO_000300: 1
SIO_000628: feature:58520228-58520427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 59232269..59232468
location: region:59232269-59232468:1
BFO_0000051: feature:59232269-59232468:1:region
SIO_000974: 2b7ff570-d9ed-4b0d-8541-b57a051c6f09

position:59232269:1
position: 59232269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59232468:1
position: 59232468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b7ff570-d9ed-4b0d-8541-b57a051c6f09
SIO_000300: 1
SIO_000628: feature:59232269-59232468:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 60896537..60896736
location: region:60896537-60896736:1
BFO_0000051: feature:60896537-60896736:1:region
SIO_000974: eceda3b6-c54c-4ebc-a534-86ad8a3d18be

position:60896537:1
position: 60896537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60896736:1
position: 60896736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eceda3b6-c54c-4ebc-a534-86ad8a3d18be
SIO_000300: 1
SIO_000628: feature:60896537-60896736:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 61415411..61415610
location: region:61415411-61415610:1
BFO_0000051: feature:61415411-61415610:1:region
SIO_000974: f0d12e4e-9499-4334-9c89-e5216e49c64c

position:61415411:1
position: 61415411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61415610:1
position: 61415610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f0d12e4e-9499-4334-9c89-e5216e49c64c
SIO_000300: 1
SIO_000628: feature:61415411-61415610:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 63240600..63240799
location: region:63240600-63240799:1
BFO_0000051: feature:63240600-63240799:1:region
SIO_000974: e8a3bb38-47c0-4f63-9ca7-b7c2b9033036

position:63240600:1
position: 63240600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63240799:1
position: 63240799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e8a3bb38-47c0-4f63-9ca7-b7c2b9033036
SIO_000300: 1
SIO_000628: feature:63240600-63240799:1:region

Montipora capitata genome assembly, chromosome: 5.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 5.
sequence version: OX421449.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 54427358
topology: linear
RO_0000086: SO_0000987
location: 1..54427358
location: region:1-54427358:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54427358:1
position: 54427358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-54427358:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 5
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1452755..1452954
location: region:1452755-1452954:1
BFO_0000051: feature:1452755-1452954:1:region
SIO_000974: 6b609767-08cb-43c4-b99a-69be10488434

position:1452755:1
position: 1452755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1452954:1
position: 1452954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b609767-08cb-43c4-b99a-69be10488434
SIO_000300: 1
SIO_000628: feature:1452755-1452954:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2008249..2008448
location: region:2008249-2008448:1
BFO_0000051: feature:2008249-2008448:1:region
SIO_000974: b38159ae-d00c-4dc9-814e-ac3880478804

position:2008249:1
position: 2008249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2008448:1
position: 2008448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b38159ae-d00c-4dc9-814e-ac3880478804
SIO_000300: 1
SIO_000628: feature:2008249-2008448:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2137895..2138094
location: region:2137895-2138094:1
BFO_0000051: feature:2137895-2138094:1:region
SIO_000974: c8a459d6-1de5-43b8-aaa9-bbbbd3ebec0c

position:2137895:1
position: 2137895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2138094:1
position: 2138094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c8a459d6-1de5-43b8-aaa9-bbbbd3ebec0c
SIO_000300: 1
SIO_000628: feature:2137895-2138094:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2312160..2312359
location: region:2312160-2312359:1
BFO_0000051: feature:2312160-2312359:1:region
SIO_000974: 4a46ef0f-3df3-4ecf-a137-048fa628c386

position:2312160:1
position: 2312160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2312359:1
position: 2312359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4a46ef0f-3df3-4ecf-a137-048fa628c386
SIO_000300: 1
SIO_000628: feature:2312160-2312359:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4795318..4795517
location: region:4795318-4795517:1
BFO_0000051: feature:4795318-4795517:1:region
SIO_000974: aa96d246-a039-4e44-ac08-f9f1a71677de

position:4795318:1
position: 4795318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4795517:1
position: 4795517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aa96d246-a039-4e44-ac08-f9f1a71677de
SIO_000300: 1
SIO_000628: feature:4795318-4795517:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5668946..5669145
location: region:5668946-5669145:1
BFO_0000051: feature:5668946-5669145:1:region
SIO_000974: 2aafa6ae-e9e5-4799-a7b4-5270d61c7b73

position:5668946:1
position: 5668946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5669145:1
position: 5669145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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RO_0002162: 46704
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
SIO_000628: feature:13545258-13545457:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:15231811-15232010:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:16934403-16934602:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:21269154-21269353:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 46704
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BFO_0000050: sequence
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BFO_0000051: feature:21479200-21479399:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000051: feature:22027612-22027811:1:region
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:22949427-22949626:1:region

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BFO_0000050: sequence
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SIO_000300: 1
SIO_000628: feature:25561983-25562182:1:region

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BFO_0000050: sequence
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BFO_0000051: feature:26371934-26372133:1:region
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SIO_000300: 1
SIO_000628: feature:26371934-26372133:1:region

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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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estimated length: 200
gap type: unknown
BFO_0000050: sequence
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SIO_000300: 1
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RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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position:35289801:1
position: 35289801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fb38d05-f114-4e40-a810-bbe9d6fcc8b4
SIO_000300: 1
SIO_000628: feature:35289602-35289801:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35658672..35658871
location: region:35658672-35658871:1
BFO_0000051: feature:35658672-35658871:1:region
SIO_000974: acce1a95-bbe7-42dd-89cc-e5732d8a08f9

position:35658672:1
position: 35658672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35658871:1
position: 35658871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

acce1a95-bbe7-42dd-89cc-e5732d8a08f9
SIO_000300: 1
SIO_000628: feature:35658672-35658871:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36258848..36259047
location: region:36258848-36259047:1
BFO_0000051: feature:36258848-36259047:1:region
SIO_000974: 243e8c25-0607-4168-b4af-a6f1b8d75263

position:36258848:1
position: 36258848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36259047:1
position: 36259047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

243e8c25-0607-4168-b4af-a6f1b8d75263
SIO_000300: 1
SIO_000628: feature:36258848-36259047:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36484051..36484250
location: region:36484051-36484250:1
BFO_0000051: feature:36484051-36484250:1:region
SIO_000974: 9a381ba8-5d58-4498-8977-26198c2cc9f8

position:36484051:1
position: 36484051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36484250:1
position: 36484250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9a381ba8-5d58-4498-8977-26198c2cc9f8
SIO_000300: 1
SIO_000628: feature:36484051-36484250:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36565202..36565401
location: region:36565202-36565401:1
BFO_0000051: feature:36565202-36565401:1:region
SIO_000974: b40b01e5-bdc3-4c7c-9b8e-ecada535133c

position:36565202:1
position: 36565202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36565401:1
position: 36565401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b40b01e5-bdc3-4c7c-9b8e-ecada535133c
SIO_000300: 1
SIO_000628: feature:36565202-36565401:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36749402..36749601
location: region:36749402-36749601:1
BFO_0000051: feature:36749402-36749601:1:region
SIO_000974: c5ccde6a-d87b-47c7-bdfa-e64fd7993e61

position:36749402:1
position: 36749402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36749601:1
position: 36749601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c5ccde6a-d87b-47c7-bdfa-e64fd7993e61
SIO_000300: 1
SIO_000628: feature:36749402-36749601:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37015698..37015897
location: region:37015698-37015897:1
BFO_0000051: feature:37015698-37015897:1:region
SIO_000974: 06d00b2f-f179-42b3-8763-205d6560b8a6

position:37015698:1
position: 37015698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37015897:1
position: 37015897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06d00b2f-f179-42b3-8763-205d6560b8a6
SIO_000300: 1
SIO_000628: feature:37015698-37015897:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37673639..37673838
location: region:37673639-37673838:1
BFO_0000051: feature:37673639-37673838:1:region
SIO_000974: da896cfc-7270-4f75-b843-d1d17529c783

position:37673639:1
position: 37673639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37673838:1
position: 37673838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da896cfc-7270-4f75-b843-d1d17529c783
SIO_000300: 1
SIO_000628: feature:37673639-37673838:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38705401..38705600
location: region:38705401-38705600:1
BFO_0000051: feature:38705401-38705600:1:region
SIO_000974: 825f0601-0de4-4e0e-91c3-b095c3f0574e

position:38705401:1
position: 38705401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38705600:1
position: 38705600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:38705401-38705600:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40039185..40039384
location: region:40039185-40039384:1
BFO_0000051: feature:40039185-40039384:1:region
SIO_000974: 31168203-33b6-4bc3-b58c-17f04acaf93b

position:40039185:1
position: 40039185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40039384:1
position: 40039384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

31168203-33b6-4bc3-b58c-17f04acaf93b
SIO_000300: 1
SIO_000628: feature:40039185-40039384:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 40794471..40794670
location: region:40794471-40794670:1
BFO_0000051: feature:40794471-40794670:1:region
SIO_000974: dd55225c-e644-4016-a672-ea924f5b5728

position:40794471:1
position: 40794471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40794670:1
position: 40794670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

dd55225c-e644-4016-a672-ea924f5b5728
SIO_000300: 1
SIO_000628: feature:40794471-40794670:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 43379271..43379470
location: region:43379271-43379470:1
BFO_0000051: feature:43379271-43379470:1:region
SIO_000974: 21dcf01f-1392-4740-96c6-d513a7522ef1

position:43379271:1
position: 43379271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43379470:1
position: 43379470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

21dcf01f-1392-4740-96c6-d513a7522ef1
SIO_000300: 1
SIO_000628: feature:43379271-43379470:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44515049..44515248
location: region:44515049-44515248:1
BFO_0000051: feature:44515049-44515248:1:region
SIO_000974: a179ab7f-fac6-40fb-889e-6a1b893d4f05

position:44515049:1
position: 44515049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44515248:1
position: 44515248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a179ab7f-fac6-40fb-889e-6a1b893d4f05
SIO_000300: 1
SIO_000628: feature:44515049-44515248:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44908435..44908634
location: region:44908435-44908634:1
BFO_0000051: feature:44908435-44908634:1:region
SIO_000974: 845876ed-8b70-4ac0-8ab2-7ff9ea0e33f2

position:44908435:1
position: 44908435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44908634:1
position: 44908634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

845876ed-8b70-4ac0-8ab2-7ff9ea0e33f2
SIO_000300: 1
SIO_000628: feature:44908435-44908634:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45423805..45424004
location: region:45423805-45424004:1
BFO_0000051: feature:45423805-45424004:1:region
SIO_000974: a51581ff-587f-4024-86f6-baed7a56fa4e

position:45423805:1
position: 45423805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45424004:1
position: 45424004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a51581ff-587f-4024-86f6-baed7a56fa4e
SIO_000300: 1
SIO_000628: feature:45423805-45424004:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 46827178..46827377
location: region:46827178-46827377:1
BFO_0000051: feature:46827178-46827377:1:region
SIO_000974: 2e7aaeb8-01f6-4ebf-9be2-3bb21aa17368

position:46827178:1
position: 46827178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46827377:1
position: 46827377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e7aaeb8-01f6-4ebf-9be2-3bb21aa17368
SIO_000300: 1
SIO_000628: feature:46827178-46827377:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 48168948..48169147
location: region:48168948-48169147:1
BFO_0000051: feature:48168948-48169147:1:region
SIO_000974: ac20f516-b15b-4021-b7a1-cb81e54fcd71

position:48168948:1
position: 48168948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48169147:1
position: 48169147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ac20f516-b15b-4021-b7a1-cb81e54fcd71
SIO_000300: 1
SIO_000628: feature:48168948-48169147:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49680014..49680213
location: region:49680014-49680213:1
BFO_0000051: feature:49680014-49680213:1:region
SIO_000974: add73360-4013-41a3-9356-9e870d3a40c6

position:49680014:1
position: 49680014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49680213:1
position: 49680213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

add73360-4013-41a3-9356-9e870d3a40c6
SIO_000300: 1
SIO_000628: feature:49680014-49680213:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49980814..49981013
location: region:49980814-49981013:1
BFO_0000051: feature:49980814-49981013:1:region
SIO_000974: ab1ca7af-5c45-4f02-832e-518807a4ab6b

position:49980814:1
position: 49980814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49981013:1
position: 49981013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab1ca7af-5c45-4f02-832e-518807a4ab6b
SIO_000300: 1
SIO_000628: feature:49980814-49981013:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 50373127..50373326
location: region:50373127-50373326:1
BFO_0000051: feature:50373127-50373326:1:region
SIO_000974: aa7cebc6-c048-4a36-a0f2-c4702217b72e

position:50373127:1
position: 50373127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50373326:1
position: 50373326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aa7cebc6-c048-4a36-a0f2-c4702217b72e
SIO_000300: 1
SIO_000628: feature:50373127-50373326:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51175178..51175377
location: region:51175178-51175377:1
BFO_0000051: feature:51175178-51175377:1:region
SIO_000974: e4d8932b-2063-42d2-90b9-047be3d7cd66

position:51175178:1
position: 51175178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51175377:1
position: 51175377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e4d8932b-2063-42d2-90b9-047be3d7cd66
SIO_000300: 1
SIO_000628: feature:51175178-51175377:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51639067..51639266
location: region:51639067-51639266:1
BFO_0000051: feature:51639067-51639266:1:region
SIO_000974: c3879464-6f34-4819-b308-e759ef40cdc6

position:51639067:1
position: 51639067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51639266:1
position: 51639266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3879464-6f34-4819-b308-e759ef40cdc6
SIO_000300: 1
SIO_000628: feature:51639067-51639266:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 51787787..51787986
location: region:51787787-51787986:1
BFO_0000051: feature:51787787-51787986:1:region
SIO_000974: 94333743-4e11-4c98-8d9f-d22b83b36af7

position:51787787:1
position: 51787787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51787986:1
position: 51787986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94333743-4e11-4c98-8d9f-d22b83b36af7
SIO_000300: 1
SIO_000628: feature:51787787-51787986:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 52689029..52689228
location: region:52689029-52689228:1
BFO_0000051: feature:52689029-52689228:1:region
SIO_000974: 97793d3a-bae4-4b66-9083-7adf0133bc5e

position:52689029:1
position: 52689029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52689228:1
position: 52689228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97793d3a-bae4-4b66-9083-7adf0133bc5e
SIO_000300: 1
SIO_000628: feature:52689029-52689228:1:region

Montipora capitata genome assembly, chromosome: 6.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 6.
sequence version: OX421450.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 47608193
topology: linear
RO_0000086: SO_0000987
location: 1..47608193
location: region:1-47608193:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47608193:1
position: 47608193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-47608193:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3590798..3590997
location: region:3590798-3590997:1
BFO_0000051: feature:3590798-3590997:1:region
SIO_000974: e5b26795-3870-49b4-9f55-e4c84a9f6d3b

position:3590798:1
position: 3590798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3590997:1
position: 3590997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5b26795-3870-49b4-9f55-e4c84a9f6d3b
SIO_000300: 1
SIO_000628: feature:3590798-3590997:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3869998..3870197
location: region:3869998-3870197:1
BFO_0000051: feature:3869998-3870197:1:region
SIO_000974: 178834a6-ab2c-4847-8aeb-c2465c6708e9

position:3869998:1
position: 3869998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3870197:1
position: 3870197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

178834a6-ab2c-4847-8aeb-c2465c6708e9
SIO_000300: 1
SIO_000628: feature:3869998-3870197:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5221490..5221689
location: region:5221490-5221689:1
BFO_0000051: feature:5221490-5221689:1:region
SIO_000974: fe2a8c96-b82f-4684-8c31-b7a05b6550f9

position:5221490:1
position: 5221490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5221689:1
position: 5221689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fe2a8c96-b82f-4684-8c31-b7a05b6550f9
SIO_000300: 1
SIO_000628: feature:5221490-5221689:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6360870..6361069
location: region:6360870-6361069:1
BFO_0000051: feature:6360870-6361069:1:region
SIO_000974: fef25840-ae64-40cd-bfd1-042aa79e052e

position:6360870:1
position: 6360870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6361069:1
position: 6361069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fef25840-ae64-40cd-bfd1-042aa79e052e
SIO_000300: 1
SIO_000628: feature:6360870-6361069:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6827482..6827681
location: region:6827482-6827681:1
BFO_0000051: feature:6827482-6827681:1:region
SIO_000974: 5ec194f9-7445-4909-9d6c-72f365afe6a1

position:6827482:1
position: 6827482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6827681:1
position: 6827681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5ec194f9-7445-4909-9d6c-72f365afe6a1
SIO_000300: 1
SIO_000628: feature:6827482-6827681:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7811405..7811604
location: region:7811405-7811604:1
BFO_0000051: feature:7811405-7811604:1:region
SIO_000974: e19244f8-0f95-452e-9ae5-37c78c0cfdf8

position:7811405:1
position: 7811405
reference: sequence
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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SIO_000300: 1
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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type: ForwardStrandPosition
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c49a990b-56e9-4fce-b673-b449a9c7a0a4
SIO_000300: 1
SIO_000628: feature:47120873-47121072:1:region

Montipora capitata genome assembly, chromosome: 7.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 7.
sequence version: OX421451.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 46186267
topology: linear
RO_0000086: SO_0000987
location: 1..46186267
location: region:1-46186267:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46186267:1
position: 46186267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-46186267:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1548804..1549003
location: region:1548804-1549003:1
BFO_0000051: feature:1548804-1549003:1:region
SIO_000974: 6dbe408d-5fb5-454a-ad97-d4759ee7baa7

position:1548804:1
position: 1548804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1549003:1
position: 1549003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1548804-1549003:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1617833..1618032
location: region:1617833-1618032:1
BFO_0000051: feature:1617833-1618032:1:region
SIO_000974: a2b3dd63-eda0-418c-9002-3e660421172a

position:1617833:1
position: 1617833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1618032:1
position: 1618032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:1617833-1618032:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2136033..2136232
location: region:2136033-2136232:1
BFO_0000051: feature:2136033-2136232:1:region
SIO_000974: 19fc8ad1-b43a-4b2e-9cf4-750332f29923

position:2136033:1
position: 2136033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2136232:1
position: 2136232
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:2136033-2136232:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8008390..8008589
location: region:8008390-8008589:1
BFO_0000051: feature:8008390-8008589:1:region
SIO_000974: a7ec8721-661e-4353-b625-d790541d9b30

position:8008390:1
position: 8008390
reference: sequence
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position:8008589:1
position: 8008589
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:8008390-8008589:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9331865..9332064
location: region:9331865-9332064:1
BFO_0000051: feature:9331865-9332064:1:region
SIO_000974: cc1515a5-e0d6-497e-a9c1-50dc73cbb0de

position:9331865:1
position: 9331865
reference: sequence
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position:9332064:1
position: 9332064
reference: sequence
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SIO_000300: 1
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:13249212-13249411:1
BFO_0000051: feature:13249212-13249411:1:region
SIO_000974: 0058d141-6539-479c-9610-7e23ddcbcffd

position:13249212:1
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reference: sequence
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position: 13249411
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:13249212-13249411:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:16819304-16819503:1
BFO_0000051: feature:16819304-16819503:1:region
SIO_000974: b8f7ca6b-133e-45cc-967a-33d4fc333a6e

position:16819304:1
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reference: sequence
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position: 16819503
reference: sequence
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SIO_000300: 1
SIO_000628: feature:16819304-16819503:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:17533680-17533879:1
BFO_0000051: feature:17533680-17533879:1:region
SIO_000974: 90f3734d-1aa6-4662-89de-7092e5782669

position:17533680:1
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reference: sequence
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:17533680-17533879:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:17761820-17762019:1
BFO_0000051: feature:17761820-17762019:1:region
SIO_000974: 2d374c9b-18cd-48ef-b5b3-2217f9c3d53f

position:17761820:1
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reference: sequence
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position: 17762019
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:17761820-17762019:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:17921020-17921219:1
BFO_0000051: feature:17921020-17921219:1:region
SIO_000974: 6cbc5f37-6058-4132-8be1-613753d050a1

position:17921020:1
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reference: sequence
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position: 17921219
reference: sequence
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SIO_000300: 1
SIO_000628: feature:17921020-17921219:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18310764-18310963:1
BFO_0000051: feature:18310764-18310963:1:region
SIO_000974: 7be79fc8-fa7b-4ce4-81d9-5343297603fa

position:18310764:1
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reference: sequence
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position: 18310963
reference: sequence
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SIO_000300: 1
SIO_000628: feature:18310764-18310963:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18783237-18783436:1
BFO_0000051: feature:18783237-18783436:1:region
SIO_000974: 658312e6-6ef7-4e1e-9ff6-aad1c1c3867c

position:18783237:1
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reference: sequence
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position:18783436:1
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:18783237-18783436:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:18910337-18910536:1
BFO_0000051: feature:18910337-18910536:1:region
SIO_000974: 5d2f7a13-9c14-46b9-9ca1-ddb179757639

position:18910337:1
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reference: sequence
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position:18910536:1
position: 18910536
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:18910337-18910536:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20755537..20755736
location: region:20755537-20755736:1
BFO_0000051: feature:20755537-20755736:1:region
SIO_000974: b961b983-bf10-4156-b569-bc14dd530927

position:20755537:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:20755537-20755736:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:21273858-21274057:1
BFO_0000051: feature:21273858-21274057:1:region
SIO_000974: db3f5945-4efd-4fc9-a985-fd1de503c1a6

position:21273858:1
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reference: sequence
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position:21274057:1
position: 21274057
reference: sequence
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SIO_000300: 1
SIO_000628: feature:21273858-21274057:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:21503227-21503426:1
BFO_0000051: feature:21503227-21503426:1:region
SIO_000974: b5f3cda2-d9b6-404a-a179-092ba42c4c18

position:21503227:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:21503227-21503426:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:22244929-22245128:1
BFO_0000051: feature:22244929-22245128:1:region
SIO_000974: 94d03b83-9db7-46c7-b861-1c860c575c97

position:22244929:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:22244929-22245128:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:24173648-24173847:1
BFO_0000051: feature:24173648-24173847:1:region
SIO_000974: 44092be6-506a-4cc1-9e81-a416cfe39fd8

position:24173648:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:24173648-24173847:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:24720732-24720931:1
BFO_0000051: feature:24720732-24720931:1:region
SIO_000974: 67cf04ad-d5a6-4a35-8188-1260ca80a3ae

position:24720732:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:24720732-24720931:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:26863459-26863658:1
BFO_0000051: feature:26863459-26863658:1:region
SIO_000974: fb8a8a92-9d2b-4ae4-bfd6-468a8ed65a8e

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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:26863459-26863658:1:region

assembly_gap
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RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:27572787-27572986:1
BFO_0000051: feature:27572787-27572986:1:region
SIO_000974: 9fd5db36-33a9-431c-b174-bb6a2e197e2b

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reference: sequence
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reference: sequence
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SIO_000300: 1
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assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:28914461-28914660:1
BFO_0000051: feature:28914461-28914660:1:region
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position:28914461:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:28914461-28914660:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:30826216-30826415:1
BFO_0000051: feature:30826216-30826415:1:region
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position:30826216:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:30826216-30826415:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:31007703-31007902:1
BFO_0000051: feature:31007703-31007902:1:region
SIO_000974: 6b5c6620-847e-4e30-a722-1fee2f0dac35

position:31007703:1
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reference: sequence
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reference: sequence
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SIO_000300: 1
SIO_000628: feature:31007703-31007902:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:31483077-31483276:1
BFO_0000051: feature:31483077-31483276:1:region
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position:31483077:1
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reference: sequence
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position:31483276:1
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reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:31483077-31483276:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:32230642-32230841:1
BFO_0000051: feature:32230642-32230841:1:region
SIO_000974: d8a152c4-7fdc-45cb-94e1-19ebfe169cfe

position:32230642:1
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reference: sequence
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position: 32230841
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:32230642-32230841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32440695..32440894
location: region:32440695-32440894:1
BFO_0000051: feature:32440695-32440894:1:region
SIO_000974: cb4b0c03-99f5-4e11-aaa3-8bda1921305a

position:32440695:1
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reference: sequence
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position: 32440894
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:32440695-32440894:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:33126419-33126618:1
BFO_0000051: feature:33126419-33126618:1:region
SIO_000974: 5020099f-0324-43b2-8236-f9247664cadd

position:33126419:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33126618:1
position: 33126618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33126419-33126618:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33551733..33551932
location: region:33551733-33551932:1
BFO_0000051: feature:33551733-33551932:1:region
SIO_000974: 9b71ca7d-1e6c-4cee-bd94-4df1aced3c01

position:33551733:1
position: 33551733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33551932:1
position: 33551932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9b71ca7d-1e6c-4cee-bd94-4df1aced3c01
SIO_000300: 1
SIO_000628: feature:33551733-33551932:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35275749..35275948
location: region:35275749-35275948:1
BFO_0000051: feature:35275749-35275948:1:region
SIO_000974: 68be04f7-85d1-49ff-b419-22eb194c24e9

position:35275749:1
position: 35275749
reference: sequence
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position:35275948:1
position: 35275948
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:35275749-35275948:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35765812..35766011
location: region:35765812-35766011:1
BFO_0000051: feature:35765812-35766011:1:region
SIO_000974: 75211bd4-82f6-4021-8f01-827263b947e2

position:35765812:1
position: 35765812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35766011:1
position: 35766011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:35765812-35766011:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39350088..39350287
location: region:39350088-39350287:1
BFO_0000051: feature:39350088-39350287:1:region
SIO_000974: 4c3f7218-d427-4162-afd2-7b54ba182803

position:39350088:1
position: 39350088
reference: sequence
type: ForwardStrandPosition
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position:39350287:1
position: 39350287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39350088-39350287:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39482651..39482850
location: region:39482651-39482850:1
BFO_0000051: feature:39482651-39482850:1:region
SIO_000974: e0da9012-1c49-4db9-9395-da8e36286eee

position:39482651:1
position: 39482651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39482850:1
position: 39482850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:39482651-39482850:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39740316..39740515
location: region:39740316-39740515:1
BFO_0000051: feature:39740316-39740515:1:region
SIO_000974: 255b8ebe-dac6-48cf-8a55-4595dd8e398a

position:39740316:1
position: 39740316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39740515:1
position: 39740515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

255b8ebe-dac6-48cf-8a55-4595dd8e398a
SIO_000300: 1
SIO_000628: feature:39740316-39740515:1:region

Montipora capitata genome assembly, chromosome: 8.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 8.
sequence version: OX421452.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 45683084
topology: linear
RO_0000086: SO_0000987
location: 1..45683084
location: region:1-45683084:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45683084:1
position: 45683084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45683084:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 49079..49278
location: region:49079-49278:1
BFO_0000051: feature:49079-49278:1:region
SIO_000974: 07debf6e-3056-4e6b-ad39-8445109886a6

position:49079:1
position: 49079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49278:1
position: 49278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

07debf6e-3056-4e6b-ad39-8445109886a6
SIO_000300: 1
SIO_000628: feature:49079-49278:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 141205..141404
location: region:141205-141404:1
BFO_0000051: feature:141205-141404:1:region
SIO_000974: b7321f39-3c21-4dec-be46-f769cbf6fe26

position:141205:1
position: 141205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141404:1
position: 141404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b7321f39-3c21-4dec-be46-f769cbf6fe26
SIO_000300: 1
SIO_000628: feature:141205-141404:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2045254..2045453
location: region:2045254-2045453:1
BFO_0000051: feature:2045254-2045453:1:region
SIO_000974: c89d841e-a426-4dab-b79f-d23074a11313

position:2045254:1
position: 2045254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2045453:1
position: 2045453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c89d841e-a426-4dab-b79f-d23074a11313
SIO_000300: 1
SIO_000628: feature:2045254-2045453:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5864100..5864299
location: region:5864100-5864299:1
BFO_0000051: feature:5864100-5864299:1:region
SIO_000974: 86378ad4-8a38-4c7a-87ee-fdb0a4d9bdb6

position:5864100:1
position: 5864100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5864299:1
position: 5864299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:5864100-5864299:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7114064..7114263
location: region:7114064-7114263:1
BFO_0000051: feature:7114064-7114263:1:region
SIO_000974: fee69204-a260-470d-9062-e7befab2b43b

position:7114064:1
position: 7114064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7114263:1
position: 7114263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7114064-7114263:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7809435..7809634
location: region:7809435-7809634:1
BFO_0000051: feature:7809435-7809634:1:region
SIO_000974: c649a6bf-8991-427d-aa83-2d59f40f2e2a

position:7809435:1
position: 7809435
reference: sequence
type: ForwardStrandPosition
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position:7809634:1
position: 7809634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7809435-7809634:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8789951..8790150
location: region:8789951-8790150:1
BFO_0000051: feature:8789951-8790150:1:region
SIO_000974: d316d93b-6119-4393-8bba-9978b2c50944

position:8789951:1
position: 8789951
reference: sequence
type: ForwardStrandPosition
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position:8790150:1
position: 8790150
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:8789951-8790150:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8861717..8861916
location: region:8861717-8861916:1
BFO_0000051: feature:8861717-8861916:1:region
SIO_000974: 9c7614f7-2835-4301-a5ac-1ed081cdfc86

position:8861717:1
position: 8861717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8861916:1
position: 8861916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:8861717-8861916:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:9154535-9154734:1
BFO_0000051: feature:9154535-9154734:1:region
SIO_000974: 9ced398c-8d28-4dd3-81e1-9552e3bd92f0

position:9154535:1
position: 9154535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9154734:1
position: 9154734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:9154535-9154734:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10987920..10988119
location: region:10987920-10988119:1
BFO_0000051: feature:10987920-10988119:1:region
SIO_000974: 8db05444-0353-475a-831b-ba428dfbad01

position:10987920:1
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reference: sequence
type: ForwardStrandPosition
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position:10988119:1
position: 10988119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:10987920-10988119:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11303868..11304067
location: region:11303868-11304067:1
BFO_0000051: feature:11303868-11304067:1:region
SIO_000974: a426c0fb-c28a-4183-9ea0-e50a5f9efd18

position:11303868:1
position: 11303868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11304067:1
position: 11304067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:11303868-11304067:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:12077285-12077484:1
BFO_0000051: feature:12077285-12077484:1:region
SIO_000974: 6fcf924a-a348-4be1-a802-c96e444aaaee

position:12077285:1
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reference: sequence
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type: ExactPosition

position:12077484:1
position: 12077484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fcf924a-a348-4be1-a802-c96e444aaaee
SIO_000300: 1
SIO_000628: feature:12077285-12077484:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13314207..13314406
location: region:13314207-13314406:1
BFO_0000051: feature:13314207-13314406:1:region
SIO_000974: e6e56554-4de6-4daf-844e-4af74caa8f76

position:13314207:1
position: 13314207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13314406:1
position: 13314406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e6e56554-4de6-4daf-844e-4af74caa8f76
SIO_000300: 1
SIO_000628: feature:13314207-13314406:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13892041..13892240
location: region:13892041-13892240:1
BFO_0000051: feature:13892041-13892240:1:region
SIO_000974: 5281bdbf-79a8-4037-b419-dfe92ae714b1

position:13892041:1
position: 13892041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13892240:1
position: 13892240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5281bdbf-79a8-4037-b419-dfe92ae714b1
SIO_000300: 1
SIO_000628: feature:13892041-13892240:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16679651..16679850
location: region:16679651-16679850:1
BFO_0000051: feature:16679651-16679850:1:region
SIO_000974: e5f9e4e9-1c02-4351-991e-06372d2e785e

position:16679651:1
position: 16679651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16679850:1
position: 16679850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e5f9e4e9-1c02-4351-991e-06372d2e785e
SIO_000300: 1
SIO_000628: feature:16679651-16679850:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17506983..17507182
location: region:17506983-17507182:1
BFO_0000051: feature:17506983-17507182:1:region
SIO_000974: 1749113b-7e70-479a-9770-c663f4f69bcf

position:17506983:1
position: 17506983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17507182:1
position: 17507182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1749113b-7e70-479a-9770-c663f4f69bcf
SIO_000300: 1
SIO_000628: feature:17506983-17507182:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20378350..20378549
location: region:20378350-20378549:1
BFO_0000051: feature:20378350-20378549:1:region
SIO_000974: 148e3f89-161a-4ce0-a4d8-960549f393f3

position:20378350:1
position: 20378350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20378549:1
position: 20378549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

148e3f89-161a-4ce0-a4d8-960549f393f3
SIO_000300: 1
SIO_000628: feature:20378350-20378549:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21697700..21697899
location: region:21697700-21697899:1
BFO_0000051: feature:21697700-21697899:1:region
SIO_000974: 514b63d5-d500-4b37-bf6a-d2bd64ce0a80

position:21697700:1
position: 21697700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21697899:1
position: 21697899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

514b63d5-d500-4b37-bf6a-d2bd64ce0a80
SIO_000300: 1
SIO_000628: feature:21697700-21697899:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25337415..25337614
location: region:25337415-25337614:1
BFO_0000051: feature:25337415-25337614:1:region
SIO_000974: eabcf2e4-f98b-4e18-ba82-e009afb21628

position:25337415:1
position: 25337415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25337614:1
position: 25337614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:25337415-25337614:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25608257..25608456
location: region:25608257-25608456:1
BFO_0000051: feature:25608257-25608456:1:region
SIO_000974: 3a454f01-0683-4f7e-aa69-41e6d3e7be6c

position:25608257:1
position: 25608257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25608456:1
position: 25608456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3a454f01-0683-4f7e-aa69-41e6d3e7be6c
SIO_000300: 1
SIO_000628: feature:25608257-25608456:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26443771..26443970
location: region:26443771-26443970:1
BFO_0000051: feature:26443771-26443970:1:region
SIO_000974: bb8f20bd-4af4-4e01-8500-1badfaecc675

position:26443771:1
position: 26443771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26443970:1
position: 26443970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bb8f20bd-4af4-4e01-8500-1badfaecc675
SIO_000300: 1
SIO_000628: feature:26443771-26443970:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26876559..26876758
location: region:26876559-26876758:1
BFO_0000051: feature:26876559-26876758:1:region
SIO_000974: aff81a2e-55f9-4da2-a38b-57651952461b

position:26876559:1
position: 26876559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26876758:1
position: 26876758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aff81a2e-55f9-4da2-a38b-57651952461b
SIO_000300: 1
SIO_000628: feature:26876559-26876758:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27021842..27022041
location: region:27021842-27022041:1
BFO_0000051: feature:27021842-27022041:1:region
SIO_000974: 4d64fc0d-eb43-434c-a915-26e81eb6266a

position:27021842:1
position: 27021842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27022041:1
position: 27022041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4d64fc0d-eb43-434c-a915-26e81eb6266a
SIO_000300: 1
SIO_000628: feature:27021842-27022041:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27648553..27648752
location: region:27648553-27648752:1
BFO_0000051: feature:27648553-27648752:1:region
SIO_000974: acbbf1d7-616e-4281-a4bc-421919577406

position:27648553:1
position: 27648553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27648752:1
position: 27648752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

acbbf1d7-616e-4281-a4bc-421919577406
SIO_000300: 1
SIO_000628: feature:27648553-27648752:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28084856..28085055
location: region:28084856-28085055:1
BFO_0000051: feature:28084856-28085055:1:region
SIO_000974: 0580eab5-6780-40ef-8f4f-a0c7976facbd

position:28084856:1
position: 28084856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28085055:1
position: 28085055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0580eab5-6780-40ef-8f4f-a0c7976facbd
SIO_000300: 1
SIO_000628: feature:28084856-28085055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28193135..28193334
location: region:28193135-28193334:1
BFO_0000051: feature:28193135-28193334:1:region
SIO_000974: 94e31d17-8bb6-4ce5-87b4-9d84069d58f5

position:28193135:1
position: 28193135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28193334:1
position: 28193334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

94e31d17-8bb6-4ce5-87b4-9d84069d58f5
SIO_000300: 1
SIO_000628: feature:28193135-28193334:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28555457..28555656
location: region:28555457-28555656:1
BFO_0000051: feature:28555457-28555656:1:region
SIO_000974: 2c4c207b-3c1a-4e06-902d-5dc55be6b494

position:28555457:1
position: 28555457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28555656:1
position: 28555656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c4c207b-3c1a-4e06-902d-5dc55be6b494
SIO_000300: 1
SIO_000628: feature:28555457-28555656:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29799562..29799761
location: region:29799562-29799761:1
BFO_0000051: feature:29799562-29799761:1:region
SIO_000974: 7f9c079f-d2b4-4041-b8e5-64ff1ca4e86b

position:29799562:1
position: 29799562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29799761:1
position: 29799761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7f9c079f-d2b4-4041-b8e5-64ff1ca4e86b
SIO_000300: 1
SIO_000628: feature:29799562-29799761:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30229525..30229724
location: region:30229525-30229724:1
BFO_0000051: feature:30229525-30229724:1:region
SIO_000974: 19e40a3e-788d-4c4b-aad3-e687db8758fe

position:30229525:1
position: 30229525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30229724:1
position: 30229724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

19e40a3e-788d-4c4b-aad3-e687db8758fe
SIO_000300: 1
SIO_000628: feature:30229525-30229724:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31206972..31207171
location: region:31206972-31207171:1
BFO_0000051: feature:31206972-31207171:1:region
SIO_000974: c659140e-2a6b-4be8-8841-15fd6db3b7d1

position:31206972:1
position: 31206972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31207171:1
position: 31207171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c659140e-2a6b-4be8-8841-15fd6db3b7d1
SIO_000300: 1
SIO_000628: feature:31206972-31207171:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32103781..32103980
location: region:32103781-32103980:1
BFO_0000051: feature:32103781-32103980:1:region
SIO_000974: 563bc12d-c7d0-4f91-8833-d26e367994ef

position:32103781:1
position: 32103781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32103980:1
position: 32103980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

563bc12d-c7d0-4f91-8833-d26e367994ef
SIO_000300: 1
SIO_000628: feature:32103781-32103980:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34197985..34198184
location: region:34197985-34198184:1
BFO_0000051: feature:34197985-34198184:1:region
SIO_000974: ff866ce7-c33e-4ce0-a1cc-885ace1feb20

position:34197985:1
position: 34197985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34198184:1
position: 34198184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff866ce7-c33e-4ce0-a1cc-885ace1feb20
SIO_000300: 1
SIO_000628: feature:34197985-34198184:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 38332349..38332548
location: region:38332349-38332548:1
BFO_0000051: feature:38332349-38332548:1:region
SIO_000974: 5037e042-30cb-4c1f-8c6c-569491493f99

position:38332349:1
position: 38332349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38332548:1
position: 38332548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5037e042-30cb-4c1f-8c6c-569491493f99
SIO_000300: 1
SIO_000628: feature:38332349-38332548:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39668915..39669114
location: region:39668915-39669114:1
BFO_0000051: feature:39668915-39669114:1:region
SIO_000974: 60f48546-9269-4c84-a946-f2515fc7c6e0

position:39668915:1
position: 39668915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39669114:1
position: 39669114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

60f48546-9269-4c84-a946-f2515fc7c6e0
SIO_000300: 1
SIO_000628: feature:39668915-39669114:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 42244949..42245148
location: region:42244949-42245148:1
BFO_0000051: feature:42244949-42245148:1:region
SIO_000974: 40c21e08-f2af-499e-8c97-321ab0ede1db

position:42244949:1
position: 42244949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42245148:1
position: 42245148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

40c21e08-f2af-499e-8c97-321ab0ede1db
SIO_000300: 1
SIO_000628: feature:42244949-42245148:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 44448541..44448740
location: region:44448541-44448740:1
BFO_0000051: feature:44448541-44448740:1:region
SIO_000974: 8d677d19-3fec-4b51-9ce5-6b12d4ddf5f7

position:44448541:1
position: 44448541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44448740:1
position: 44448740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d677d19-3fec-4b51-9ce5-6b12d4ddf5f7
SIO_000300: 1
SIO_000628: feature:44448541-44448740:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45260867..45261066
location: region:45260867-45261066:1
BFO_0000051: feature:45260867-45261066:1:region
SIO_000974: e22968eb-5774-412a-be80-1431c44db37c

position:45260867:1
position: 45260867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45261066:1
position: 45261066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e22968eb-5774-412a-be80-1431c44db37c
SIO_000300: 1
SIO_000628: feature:45260867-45261066:1:region

Montipora capitata genome assembly, chromosome: 9.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 9.
sequence version: OX421453.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 43338559
topology: linear
RO_0000086: SO_0000987
location: 1..43338559
location: region:1-43338559:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43338559:1
position: 43338559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-43338559:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 114443..114642
location: region:114443-114642:1
BFO_0000051: feature:114443-114642:1:region
SIO_000974: 82eba667-e230-41c5-a2e8-f85fdb9f60ae

position:114443:1
position: 114443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114642:1
position: 114642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82eba667-e230-41c5-a2e8-f85fdb9f60ae
SIO_000300: 1
SIO_000628: feature:114443-114642:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 650030..650229
location: region:650030-650229:1
BFO_0000051: feature:650030-650229:1:region
SIO_000974: aec0e9c8-d393-40d2-962d-dede6e5b3ee4

position:650030:1
position: 650030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650229:1
position: 650229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aec0e9c8-d393-40d2-962d-dede6e5b3ee4
SIO_000300: 1
SIO_000628: feature:650030-650229:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 948356..948555
location: region:948356-948555:1
BFO_0000051: feature:948356-948555:1:region
SIO_000974: 82efe416-8898-4ccb-b806-af80b4b27256

position:948356:1
position: 948356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:948555:1
position: 948555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

82efe416-8898-4ccb-b806-af80b4b27256
SIO_000300: 1
SIO_000628: feature:948356-948555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2104086..2104285
location: region:2104086-2104285:1
BFO_0000051: feature:2104086-2104285:1:region
SIO_000974: a2b83d8d-410a-40e9-bec4-a1c36c553c46

position:2104086:1
position: 2104086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2104285:1
position: 2104285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a2b83d8d-410a-40e9-bec4-a1c36c553c46
SIO_000300: 1
SIO_000628: feature:2104086-2104285:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3828811..3829010
location: region:3828811-3829010:1
BFO_0000051: feature:3828811-3829010:1:region
SIO_000974: 00f9cb13-8597-46c2-9515-d86f397b81f2

position:3828811:1
position: 3828811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3829010:1
position: 3829010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

00f9cb13-8597-46c2-9515-d86f397b81f2
SIO_000300: 1
SIO_000628: feature:3828811-3829010:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3869906..3870105
location: region:3869906-3870105:1
BFO_0000051: feature:3869906-3870105:1:region
SIO_000974: a4eeba05-eb97-42c3-8726-e653e5a27914

position:3869906:1
position: 3869906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3870105:1
position: 3870105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4eeba05-eb97-42c3-8726-e653e5a27914
SIO_000300: 1
SIO_000628: feature:3869906-3870105:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6404916..6405115
location: region:6404916-6405115:1
BFO_0000051: feature:6404916-6405115:1:region
SIO_000974: bbaf4f95-8e86-4636-a25f-9bf35bfc5966

position:6404916:1
position: 6404916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6405115:1
position: 6405115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bbaf4f95-8e86-4636-a25f-9bf35bfc5966
SIO_000300: 1
SIO_000628: feature:6404916-6405115:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6808283..6808482
location: region:6808283-6808482:1
BFO_0000051: feature:6808283-6808482:1:region
SIO_000974: da0e219c-749e-4e8d-af41-ecffb470bff6

position:6808283:1
position: 6808283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6808482:1
position: 6808482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

da0e219c-749e-4e8d-af41-ecffb470bff6
SIO_000300: 1
SIO_000628: feature:6808283-6808482:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7597446..7597645
location: region:7597446-7597645:1
BFO_0000051: feature:7597446-7597645:1:region
SIO_000974: b2fffa22-bc2c-4cce-9afb-e965e16d4301

position:7597446:1
position: 7597446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7597645:1
position: 7597645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b2fffa22-bc2c-4cce-9afb-e965e16d4301
SIO_000300: 1
SIO_000628: feature:7597446-7597645:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7646182..7646381
location: region:7646182-7646381:1
BFO_0000051: feature:7646182-7646381:1:region
SIO_000974: 2c4b47e5-de80-469c-846d-da9a1fd2d4dc

position:7646182:1
position: 7646182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7646381:1
position: 7646381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2c4b47e5-de80-469c-846d-da9a1fd2d4dc
SIO_000300: 1
SIO_000628: feature:7646182-7646381:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7751563..7751762
location: region:7751563-7751762:1
BFO_0000051: feature:7751563-7751762:1:region
SIO_000974: 334664fd-83a6-42f4-8699-31a65f8522f6

position:7751563:1
position: 7751563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7751762:1
position: 7751762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

334664fd-83a6-42f4-8699-31a65f8522f6
SIO_000300: 1
SIO_000628: feature:7751563-7751762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7857227..7857426
location: region:7857227-7857426:1
BFO_0000051: feature:7857227-7857426:1:region
SIO_000974: 03c7e5bb-3b4a-46ad-ad06-0f33ba020980

position:7857227:1
position: 7857227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7857426:1
position: 7857426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03c7e5bb-3b4a-46ad-ad06-0f33ba020980
SIO_000300: 1
SIO_000628: feature:7857227-7857426:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8356953..8357152
location: region:8356953-8357152:1
BFO_0000051: feature:8356953-8357152:1:region
SIO_000974: 895f3d80-d67e-4de3-8535-425321353fc8

position:8356953:1
position: 8356953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8357152:1
position: 8357152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

895f3d80-d67e-4de3-8535-425321353fc8
SIO_000300: 1
SIO_000628: feature:8356953-8357152:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11057197..11057396
location: region:11057197-11057396:1
BFO_0000051: feature:11057197-11057396:1:region
SIO_000974: 0837c7e8-aa49-46d7-a2c8-b46e5ebd8baa

position:11057197:1
position: 11057197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11057396:1
position: 11057396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0837c7e8-aa49-46d7-a2c8-b46e5ebd8baa
SIO_000300: 1
SIO_000628: feature:11057197-11057396:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11875361..11875560
location: region:11875361-11875560:1
BFO_0000051: feature:11875361-11875560:1:region
SIO_000974: 9e9f8cdd-85e3-4c18-b1e2-d429bc636451

position:11875361:1
position: 11875361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11875560:1
position: 11875560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9e9f8cdd-85e3-4c18-b1e2-d429bc636451
SIO_000300: 1
SIO_000628: feature:11875361-11875560:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13223916..13224115
location: region:13223916-13224115:1
BFO_0000051: feature:13223916-13224115:1:region
SIO_000974: 9c4ec9ba-86dd-4ff4-b183-5a50339b2a5e

position:13223916:1
position: 13223916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13224115:1
position: 13224115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c4ec9ba-86dd-4ff4-b183-5a50339b2a5e
SIO_000300: 1
SIO_000628: feature:13223916-13224115:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14644509..14644708
location: region:14644509-14644708:1
BFO_0000051: feature:14644509-14644708:1:region
SIO_000974: c4281166-a315-4ba3-9fa8-50a6d95fc549

position:14644509:1
position: 14644509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14644708:1
position: 14644708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4281166-a315-4ba3-9fa8-50a6d95fc549
SIO_000300: 1
SIO_000628: feature:14644509-14644708:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14976336..14976535
location: region:14976336-14976535:1
BFO_0000051: feature:14976336-14976535:1:region
SIO_000974: 302fd6d5-f33b-411a-b332-6b69fcdff334

position:14976336:1
position: 14976336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14976535:1
position: 14976535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

302fd6d5-f33b-411a-b332-6b69fcdff334
SIO_000300: 1
SIO_000628: feature:14976336-14976535:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15989080..15989279
location: region:15989080-15989279:1
BFO_0000051: feature:15989080-15989279:1:region
SIO_000974: 3458d31f-81bb-4edb-8807-5e7cb7fb6ee1

position:15989080:1
position: 15989080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15989279:1
position: 15989279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3458d31f-81bb-4edb-8807-5e7cb7fb6ee1
SIO_000300: 1
SIO_000628: feature:15989080-15989279:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16775476..16775675
location: region:16775476-16775675:1
BFO_0000051: feature:16775476-16775675:1:region
SIO_000974: 45567dc3-fb3b-4e04-ac49-9a3930befb89

position:16775476:1
position: 16775476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16775675:1
position: 16775675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

45567dc3-fb3b-4e04-ac49-9a3930befb89
SIO_000300: 1
SIO_000628: feature:16775476-16775675:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18084373..18084572
location: region:18084373-18084572:1
BFO_0000051: feature:18084373-18084572:1:region
SIO_000974: 2116805a-9013-4e69-be16-c4bd3e02f8bd

position:18084373:1
position: 18084373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18084572:1
position: 18084572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2116805a-9013-4e69-be16-c4bd3e02f8bd
SIO_000300: 1
SIO_000628: feature:18084373-18084572:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20171573..20171772
location: region:20171573-20171772:1
BFO_0000051: feature:20171573-20171772:1:region
SIO_000974: 378c944e-8555-48e7-bddc-cbd17bc2a0a2

position:20171573:1
position: 20171573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20171772:1
position: 20171772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

378c944e-8555-48e7-bddc-cbd17bc2a0a2
SIO_000300: 1
SIO_000628: feature:20171573-20171772:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21692718..21692917
location: region:21692718-21692917:1
BFO_0000051: feature:21692718-21692917:1:region
SIO_000974: 41007cd2-fd6c-498f-a547-8f75a9de86e7

position:21692718:1
position: 21692718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21692917:1
position: 21692917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

41007cd2-fd6c-498f-a547-8f75a9de86e7
SIO_000300: 1
SIO_000628: feature:21692718-21692917:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25794665..25794864
location: region:25794665-25794864:1
BFO_0000051: feature:25794665-25794864:1:region
SIO_000974: f2d81c43-a63a-4cc6-ae51-ea731d6d2203

position:25794665:1
position: 25794665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25794864:1
position: 25794864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2d81c43-a63a-4cc6-ae51-ea731d6d2203
SIO_000300: 1
SIO_000628: feature:25794665-25794864:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26082926..26083125
location: region:26082926-26083125:1
BFO_0000051: feature:26082926-26083125:1:region
SIO_000974: 58832a42-c8ab-479c-8913-24f7cfff5368

position:26082926:1
position: 26082926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26083125:1
position: 26083125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

58832a42-c8ab-479c-8913-24f7cfff5368
SIO_000300: 1
SIO_000628: feature:26082926-26083125:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26132898..26133097
location: region:26132898-26133097:1
BFO_0000051: feature:26132898-26133097:1:region
SIO_000974: 8fd552f1-4aff-4ff1-a7a1-9cd04979f888

position:26132898:1
position: 26132898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26133097:1
position: 26133097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8fd552f1-4aff-4ff1-a7a1-9cd04979f888
SIO_000300: 1
SIO_000628: feature:26132898-26133097:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26204415..26204614
location: region:26204415-26204614:1
BFO_0000051: feature:26204415-26204614:1:region
SIO_000974: 5354eeb6-3031-4803-bb4a-2c8210ce612f

position:26204415:1
position: 26204415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26204614:1
position: 26204614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5354eeb6-3031-4803-bb4a-2c8210ce612f
SIO_000300: 1
SIO_000628: feature:26204415-26204614:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26939831..26940030
location: region:26939831-26940030:1
BFO_0000051: feature:26939831-26940030:1:region
SIO_000974: 72327773-198f-49b6-a6ab-d64683cead0e

position:26939831:1
position: 26939831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26940030:1
position: 26940030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

72327773-198f-49b6-a6ab-d64683cead0e
SIO_000300: 1
SIO_000628: feature:26939831-26940030:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29747789..29747988
location: region:29747789-29747988:1
BFO_0000051: feature:29747789-29747988:1:region
SIO_000974: 44730dad-83b9-4cd6-8c1a-f12e2c6ae5c3

position:29747789:1
position: 29747789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29747988:1
position: 29747988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

44730dad-83b9-4cd6-8c1a-f12e2c6ae5c3
SIO_000300: 1
SIO_000628: feature:29747789-29747988:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30095867..30096066
location: region:30095867-30096066:1
BFO_0000051: feature:30095867-30096066:1:region
SIO_000974: c28bb800-60a4-4e11-8c48-33370ff28734

position:30095867:1
position: 30095867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30096066:1
position: 30096066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c28bb800-60a4-4e11-8c48-33370ff28734
SIO_000300: 1
SIO_000628: feature:30095867-30096066:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30669870..30670069
location: region:30669870-30670069:1
BFO_0000051: feature:30669870-30670069:1:region
SIO_000974: b5312e30-0a7a-43c0-8354-a1eacd63edb9

position:30669870:1
position: 30669870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30670069:1
position: 30670069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b5312e30-0a7a-43c0-8354-a1eacd63edb9
SIO_000300: 1
SIO_000628: feature:30669870-30670069:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32172287..32172486
location: region:32172287-32172486:1
BFO_0000051: feature:32172287-32172486:1:region
SIO_000974: 0ac7c356-8d37-4043-b90d-3e42a601b830

position:32172287:1
position: 32172287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32172486:1
position: 32172486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0ac7c356-8d37-4043-b90d-3e42a601b830
SIO_000300: 1
SIO_000628: feature:32172287-32172486:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32710403..32710602
location: region:32710403-32710602:1
BFO_0000051: feature:32710403-32710602:1:region
SIO_000974: ddab82cb-0a2d-4f5f-afee-f424081093bc

position:32710403:1
position: 32710403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32710602:1
position: 32710602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ddab82cb-0a2d-4f5f-afee-f424081093bc
SIO_000300: 1
SIO_000628: feature:32710403-32710602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34033887..34034086
location: region:34033887-34034086:1
BFO_0000051: feature:34033887-34034086:1:region
SIO_000974: c550e1b4-2756-4937-9467-791922674684

position:34033887:1
position: 34033887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34034086:1
position: 34034086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c550e1b4-2756-4937-9467-791922674684
SIO_000300: 1
SIO_000628: feature:34033887-34034086:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36043191..36043390
location: region:36043191-36043390:1
BFO_0000051: feature:36043191-36043390:1:region
SIO_000974: 51989109-d63e-4581-94b7-2cacb517a32b

position:36043191:1
position: 36043191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36043390:1
position: 36043390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

51989109-d63e-4581-94b7-2cacb517a32b
SIO_000300: 1
SIO_000628: feature:36043191-36043390:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36463083..36463282
location: region:36463083-36463282:1
BFO_0000051: feature:36463083-36463282:1:region
SIO_000974: a5f2073a-e0f3-4ecd-94b1-5251a0181a3d

position:36463083:1
position: 36463083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36463282:1
position: 36463282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5f2073a-e0f3-4ecd-94b1-5251a0181a3d
SIO_000300: 1
SIO_000628: feature:36463083-36463282:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 37014485..37014684
location: region:37014485-37014684:1
BFO_0000051: feature:37014485-37014684:1:region
SIO_000974: 857e7483-ef92-4c1e-9bbf-a2036a0ef271

position:37014485:1
position: 37014485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37014684:1
position: 37014684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

857e7483-ef92-4c1e-9bbf-a2036a0ef271
SIO_000300: 1
SIO_000628: feature:37014485-37014684:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39866969..39867168
location: region:39866969-39867168:1
BFO_0000051: feature:39866969-39867168:1:region
SIO_000974: 8d01a38c-ac94-40b8-b3e4-d81be6f68fc9

position:39866969:1
position: 39866969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39867168:1
position: 39867168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8d01a38c-ac94-40b8-b3e4-d81be6f68fc9
SIO_000300: 1
SIO_000628: feature:39866969-39867168:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 39930726..39930925
location: region:39930726-39930925:1
BFO_0000051: feature:39930726-39930925:1:region
SIO_000974: e89f9de2-2484-4f3d-9b5b-f1b8f9cd832f

position:39930726:1
position: 39930726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39930925:1
position: 39930925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e89f9de2-2484-4f3d-9b5b-f1b8f9cd832f
SIO_000300: 1
SIO_000628: feature:39930726-39930925:1:region

Montipora capitata genome assembly, chromosome: 10.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 10.
sequence version: OX421454.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 40290779
topology: linear
RO_0000086: SO_0000987
location: 1..40290779
location: region:1-40290779:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40290779:1
position: 40290779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-40290779:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 408117..408316
location: region:408117-408316:1
BFO_0000051: feature:408117-408316:1:region
SIO_000974: 95708db8-7000-4cab-8d5d-d38273668bc0

position:408117:1
position: 408117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408316:1
position: 408316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

95708db8-7000-4cab-8d5d-d38273668bc0
SIO_000300: 1
SIO_000628: feature:408117-408316:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6560806..6561005
location: region:6560806-6561005:1
BFO_0000051: feature:6560806-6561005:1:region
SIO_000974: 0e40fb3a-c66a-4b8d-a045-88b41704706f

position:6560806:1
position: 6560806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6561005:1
position: 6561005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0e40fb3a-c66a-4b8d-a045-88b41704706f
SIO_000300: 1
SIO_000628: feature:6560806-6561005:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8700659..8700858
location: region:8700659-8700858:1
BFO_0000051: feature:8700659-8700858:1:region
SIO_000974: 68fdfd6a-e36b-4d00-9fbc-47de2021f2c7

position:8700659:1
position: 8700659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8700858:1
position: 8700858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

68fdfd6a-e36b-4d00-9fbc-47de2021f2c7
SIO_000300: 1
SIO_000628: feature:8700659-8700858:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8989802..8990001
location: region:8989802-8990001:1
BFO_0000051: feature:8989802-8990001:1:region
SIO_000974: 249b612a-e160-40eb-84bb-ce17f64fdc65

position:8989802:1
position: 8989802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8990001:1
position: 8990001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

249b612a-e160-40eb-84bb-ce17f64fdc65
SIO_000300: 1
SIO_000628: feature:8989802-8990001:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9477042..9477241
location: region:9477042-9477241:1
BFO_0000051: feature:9477042-9477241:1:region
SIO_000974: a0b604ab-1e71-4717-a0fd-e67828536da0

position:9477042:1
position: 9477042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9477241:1
position: 9477241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0b604ab-1e71-4717-a0fd-e67828536da0
SIO_000300: 1
SIO_000628: feature:9477042-9477241:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10458351..10458550
location: region:10458351-10458550:1
BFO_0000051: feature:10458351-10458550:1:region
SIO_000974: 4763f6ee-dadf-47e1-b6cc-914169eee7a4

position:10458351:1
position: 10458351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10458550:1
position: 10458550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4763f6ee-dadf-47e1-b6cc-914169eee7a4
SIO_000300: 1
SIO_000628: feature:10458351-10458550:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10626558..10626757
location: region:10626558-10626757:1
BFO_0000051: feature:10626558-10626757:1:region
SIO_000974: 24c7bf86-1e38-438a-a029-52097badccb7

position:10626558:1
position: 10626558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10626757:1
position: 10626757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

24c7bf86-1e38-438a-a029-52097badccb7
SIO_000300: 1
SIO_000628: feature:10626558-10626757:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10811452..10811651
location: region:10811452-10811651:1
BFO_0000051: feature:10811452-10811651:1:region
SIO_000974: e2d04a31-6959-4e0f-a3d5-f62a585efde9

position:10811452:1
position: 10811452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10811651:1
position: 10811651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e2d04a31-6959-4e0f-a3d5-f62a585efde9
SIO_000300: 1
SIO_000628: feature:10811452-10811651:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10906995..10907194
location: region:10906995-10907194:1
BFO_0000051: feature:10906995-10907194:1:region
SIO_000974: b235a076-0a90-444f-84fa-6f8597386de2

position:10906995:1
position: 10906995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10907194:1
position: 10907194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b235a076-0a90-444f-84fa-6f8597386de2
SIO_000300: 1
SIO_000628: feature:10906995-10907194:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11565386..11565585
location: region:11565386-11565585:1
BFO_0000051: feature:11565386-11565585:1:region
SIO_000974: ec5597a8-d02f-496b-bd7e-a20298c0026f

position:11565386:1
position: 11565386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11565585:1
position: 11565585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ec5597a8-d02f-496b-bd7e-a20298c0026f
SIO_000300: 1
SIO_000628: feature:11565386-11565585:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12639798..12639997
location: region:12639798-12639997:1
BFO_0000051: feature:12639798-12639997:1:region
SIO_000974: 3326b128-49ab-43c6-8661-37967f178b2e

position:12639798:1
position: 12639798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12639997:1
position: 12639997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3326b128-49ab-43c6-8661-37967f178b2e
SIO_000300: 1
SIO_000628: feature:12639798-12639997:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13055743..13055942
location: region:13055743-13055942:1
BFO_0000051: feature:13055743-13055942:1:region
SIO_000974: a06a5183-ca56-4815-85f5-6a382d713167

position:13055743:1
position: 13055743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13055942:1
position: 13055942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a06a5183-ca56-4815-85f5-6a382d713167
SIO_000300: 1
SIO_000628: feature:13055743-13055942:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13584370..13584569
location: region:13584370-13584569:1
BFO_0000051: feature:13584370-13584569:1:region
SIO_000974: c4f3caba-f438-4d89-8e52-f2aa8b21b6da

position:13584370:1
position: 13584370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13584569:1
position: 13584569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4f3caba-f438-4d89-8e52-f2aa8b21b6da
SIO_000300: 1
SIO_000628: feature:13584370-13584569:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14584223..14584422
location: region:14584223-14584422:1
BFO_0000051: feature:14584223-14584422:1:region
SIO_000974: cade646b-ed3b-431f-8ad2-55c9ea97df73

position:14584223:1
position: 14584223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14584422:1
position: 14584422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cade646b-ed3b-431f-8ad2-55c9ea97df73
SIO_000300: 1
SIO_000628: feature:14584223-14584422:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15890423..15890622
location: region:15890423-15890622:1
BFO_0000051: feature:15890423-15890622:1:region
SIO_000974: ff008234-949f-4698-8d2d-565ce044498d

position:15890423:1
position: 15890423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15890622:1
position: 15890622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ff008234-949f-4698-8d2d-565ce044498d
SIO_000300: 1
SIO_000628: feature:15890423-15890622:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16417642..16417841
location: region:16417642-16417841:1
BFO_0000051: feature:16417642-16417841:1:region
SIO_000974: 5192a0c2-899f-4248-b1c0-e2f43edb0785

position:16417642:1
position: 16417642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16417841:1
position: 16417841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5192a0c2-899f-4248-b1c0-e2f43edb0785
SIO_000300: 1
SIO_000628: feature:16417642-16417841:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17092075..17092274
location: region:17092075-17092274:1
BFO_0000051: feature:17092075-17092274:1:region
SIO_000974: e3b9a121-1f4d-459f-8dc9-4300eb53b00d

position:17092075:1
position: 17092075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17092274:1
position: 17092274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e3b9a121-1f4d-459f-8dc9-4300eb53b00d
SIO_000300: 1
SIO_000628: feature:17092075-17092274:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18849941..18850140
location: region:18849941-18850140:1
BFO_0000051: feature:18849941-18850140:1:region
SIO_000974: b4060f54-487d-46d9-854a-c20fcda29b92

position:18849941:1
position: 18849941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18850140:1
position: 18850140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b4060f54-487d-46d9-854a-c20fcda29b92
SIO_000300: 1
SIO_000628: feature:18849941-18850140:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20426065..20426264
location: region:20426065-20426264:1
BFO_0000051: feature:20426065-20426264:1:region
SIO_000974: 1218ede7-038c-439a-ab83-6e7a85cbbf2b

position:20426065:1
position: 20426065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20426264:1
position: 20426264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1218ede7-038c-439a-ab83-6e7a85cbbf2b
SIO_000300: 1
SIO_000628: feature:20426065-20426264:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21544873..21545072
location: region:21544873-21545072:1
BFO_0000051: feature:21544873-21545072:1:region
SIO_000974: 15cee098-f8e8-4c8b-aca7-a02e4cd83918

position:21544873:1
position: 21544873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21545072:1
position: 21545072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

15cee098-f8e8-4c8b-aca7-a02e4cd83918
SIO_000300: 1
SIO_000628: feature:21544873-21545072:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21621647..21621846
location: region:21621647-21621846:1
BFO_0000051: feature:21621647-21621846:1:region
SIO_000974: ab2eb5f0-12a0-4fd2-ac76-42fe9708738f

position:21621647:1
position: 21621647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21621846:1
position: 21621846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ab2eb5f0-12a0-4fd2-ac76-42fe9708738f
SIO_000300: 1
SIO_000628: feature:21621647-21621846:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22140152..22140351
location: region:22140152-22140351:1
BFO_0000051: feature:22140152-22140351:1:region
SIO_000974: 4b5b976d-1363-4741-9493-fb495e13c06a

position:22140152:1
position: 22140152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22140351:1
position: 22140351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4b5b976d-1363-4741-9493-fb495e13c06a
SIO_000300: 1
SIO_000628: feature:22140152-22140351:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23319933..23320132
location: region:23319933-23320132:1
BFO_0000051: feature:23319933-23320132:1:region
SIO_000974: 415ef74a-382c-44f2-acb5-cad8092ffd8b

position:23319933:1
position: 23319933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23320132:1
position: 23320132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

415ef74a-382c-44f2-acb5-cad8092ffd8b
SIO_000300: 1
SIO_000628: feature:23319933-23320132:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25042789..25042988
location: region:25042789-25042988:1
BFO_0000051: feature:25042789-25042988:1:region
SIO_000974: ddfb7cf7-eb51-446f-88e5-95c8297a187c

position:25042789:1
position: 25042789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25042988:1
position: 25042988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ddfb7cf7-eb51-446f-88e5-95c8297a187c
SIO_000300: 1
SIO_000628: feature:25042789-25042988:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25154318..25154517
location: region:25154318-25154517:1
BFO_0000051: feature:25154318-25154517:1:region
SIO_000974: a5780a3c-72d5-4163-89c6-45c5bdb7efde

position:25154318:1
position: 25154318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25154517:1
position: 25154517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a5780a3c-72d5-4163-89c6-45c5bdb7efde
SIO_000300: 1
SIO_000628: feature:25154318-25154517:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25453744..25453943
location: region:25453744-25453943:1
BFO_0000051: feature:25453744-25453943:1:region
SIO_000974: 7e6f9465-ded4-469b-b47e-b29d86dda723

position:25453744:1
position: 25453744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25453943:1
position: 25453943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7e6f9465-ded4-469b-b47e-b29d86dda723
SIO_000300: 1
SIO_000628: feature:25453744-25453943:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28727944..28728143
location: region:28727944-28728143:1
BFO_0000051: feature:28727944-28728143:1:region
SIO_000974: a8da6b36-31ae-4038-8373-babe3592a304

position:28727944:1
position: 28727944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28728143:1
position: 28728143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8da6b36-31ae-4038-8373-babe3592a304
SIO_000300: 1
SIO_000628: feature:28727944-28728143:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30576445..30576644
location: region:30576445-30576644:1
BFO_0000051: feature:30576445-30576644:1:region
SIO_000974: c385f42f-6f48-4bf3-a1f7-60838c293b26

position:30576445:1
position: 30576445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30576644:1
position: 30576644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c385f42f-6f48-4bf3-a1f7-60838c293b26
SIO_000300: 1
SIO_000628: feature:30576445-30576644:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31296304..31296503
location: region:31296304-31296503:1
BFO_0000051: feature:31296304-31296503:1:region
SIO_000974: 973f11d3-2ef4-4f64-965f-443b9c112618

position:31296304:1
position: 31296304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31296503:1
position: 31296503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

973f11d3-2ef4-4f64-965f-443b9c112618
SIO_000300: 1
SIO_000628: feature:31296304-31296503:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33862306..33862505
location: region:33862306-33862505:1
BFO_0000051: feature:33862306-33862505:1:region
SIO_000974: 1a4740e8-14d4-4db5-8cd7-327aabe485f1

position:33862306:1
position: 33862306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33862505:1
position: 33862505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a4740e8-14d4-4db5-8cd7-327aabe485f1
SIO_000300: 1
SIO_000628: feature:33862306-33862505:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 34273598..34273797
location: region:34273598-34273797:1
BFO_0000051: feature:34273598-34273797:1:region
SIO_000974: 83a56cc9-81e0-4244-b7d4-433c29907957

position:34273598:1
position: 34273598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34273797:1
position: 34273797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

83a56cc9-81e0-4244-b7d4-433c29907957
SIO_000300: 1
SIO_000628: feature:34273598-34273797:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36226310..36226509
location: region:36226310-36226509:1
BFO_0000051: feature:36226310-36226509:1:region
SIO_000974: 650bb0f9-50b9-4dfe-b49a-04c08a2168cb

position:36226310:1
position: 36226310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36226509:1
position: 36226509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

650bb0f9-50b9-4dfe-b49a-04c08a2168cb
SIO_000300: 1
SIO_000628: feature:36226310-36226509:1:region

Montipora capitata genome assembly, chromosome: 11.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 11.
sequence version: OX421455.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 38621353
topology: linear
RO_0000086: SO_0000987
location: 1..38621353
location: region:1-38621353:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38621353:1
position: 38621353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38621353:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 11
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1052690..1052889
location: region:1052690-1052889:1
BFO_0000051: feature:1052690-1052889:1:region
SIO_000974: 056d5c92-c79e-484f-b1a3-d14c3f9caf1b

position:1052690:1
position: 1052690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1052889:1
position: 1052889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

056d5c92-c79e-484f-b1a3-d14c3f9caf1b
SIO_000300: 1
SIO_000628: feature:1052690-1052889:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2251313..2251512
location: region:2251313-2251512:1
BFO_0000051: feature:2251313-2251512:1:region
SIO_000974: 3a40fe9e-9e6e-424a-97e1-bd417779290e

position:2251313:1
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BFO_0000050: sequence
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SIO_000300: 1
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BFO_0000050: sequence
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location: region:34579976-34580175:1
BFO_0000051: feature:34579976-34580175:1:region
SIO_000974: 71bf1e1f-65b8-47ee-a488-2b3aa8eaadc4

position:34579976:1
position: 34579976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34580175:1
position: 34580175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

71bf1e1f-65b8-47ee-a488-2b3aa8eaadc4
SIO_000300: 1
SIO_000628: feature:34579976-34580175:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35253127..35253326
location: region:35253127-35253326:1
BFO_0000051: feature:35253127-35253326:1:region
SIO_000974: b46e1d51-d09e-4e5c-b2b8-4b97cee1deef

position:35253127:1
position: 35253127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35253326:1
position: 35253326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b46e1d51-d09e-4e5c-b2b8-4b97cee1deef
SIO_000300: 1
SIO_000628: feature:35253127-35253326:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36926302..36926501
location: region:36926302-36926501:1
BFO_0000051: feature:36926302-36926501:1:region
SIO_000974: 86f313d9-43ca-45f2-a864-edda23837f01

position:36926302:1
position: 36926302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36926501:1
position: 36926501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

86f313d9-43ca-45f2-a864-edda23837f01
SIO_000300: 1
SIO_000628: feature:36926302-36926501:1:region

Montipora capitata genome assembly, chromosome: 12.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 12.
sequence version: OX421456.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 38220520
topology: linear
RO_0000086: SO_0000987
location: 1..38220520
location: region:1-38220520:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38220520:1
position: 38220520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-38220520:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 12
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 5033770..5033969
location: region:5033770-5033969:1
BFO_0000051: feature:5033770-5033969:1:region
SIO_000974: 7751c098-831f-42a5-a6cd-2951eb077c0d

position:5033770:1
position: 5033770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5033969:1
position: 5033969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7751c098-831f-42a5-a6cd-2951eb077c0d
SIO_000300: 1
SIO_000628: feature:5033770-5033969:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6663910..6664109
location: region:6663910-6664109:1
BFO_0000051: feature:6663910-6664109:1:region
SIO_000974: a0e66865-6068-47d5-a917-4fa0db5f1f4a

position:6663910:1
position: 6663910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6664109:1
position: 6664109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a0e66865-6068-47d5-a917-4fa0db5f1f4a
SIO_000300: 1
SIO_000628: feature:6663910-6664109:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7028496..7028695
location: region:7028496-7028695:1
BFO_0000051: feature:7028496-7028695:1:region
SIO_000974: 3185cb8f-6d84-4ac5-ba50-28e866561ba2

position:7028496:1
position: 7028496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7028695:1
position: 7028695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3185cb8f-6d84-4ac5-ba50-28e866561ba2
SIO_000300: 1
SIO_000628: feature:7028496-7028695:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8023054..8023253
location: region:8023054-8023253:1
BFO_0000051: feature:8023054-8023253:1:region
SIO_000974: 64722dd0-9815-4436-90a5-088729d328f6

position:8023054:1
position: 8023054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8023253:1
position: 8023253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

64722dd0-9815-4436-90a5-088729d328f6
SIO_000300: 1
SIO_000628: feature:8023054-8023253:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8398913..8399112
location: region:8398913-8399112:1
BFO_0000051: feature:8398913-8399112:1:region
SIO_000974: a46d32d1-61ef-4607-aafb-2f772450d833

position:8398913:1
position: 8398913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8399112:1
position: 8399112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a46d32d1-61ef-4607-aafb-2f772450d833
SIO_000300: 1
SIO_000628: feature:8398913-8399112:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9451534..9451733
location: region:9451534-9451733:1
BFO_0000051: feature:9451534-9451733:1:region
SIO_000974: 1676f8e8-f0eb-4738-9d7e-af2c7338db94

position:9451534:1
position: 9451534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9451733:1
position: 9451733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1676f8e8-f0eb-4738-9d7e-af2c7338db94
SIO_000300: 1
SIO_000628: feature:9451534-9451733:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9674489..9674688
location: region:9674489-9674688:1
BFO_0000051: feature:9674489-9674688:1:region
SIO_000974: 2aafe5ec-9274-4a7d-8790-1f43fc541d99

position:9674489:1
position: 9674489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9674688:1
position: 9674688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2aafe5ec-9274-4a7d-8790-1f43fc541d99
SIO_000300: 1
SIO_000628: feature:9674489-9674688:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10351024..10351223
location: region:10351024-10351223:1
BFO_0000051: feature:10351024-10351223:1:region
SIO_000974: 9bdea48d-5cf5-4310-90f5-ba5b70f8b35a

position:10351024:1
position: 10351024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10351223:1
position: 10351223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9bdea48d-5cf5-4310-90f5-ba5b70f8b35a
SIO_000300: 1
SIO_000628: feature:10351024-10351223:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10606668..10606867
location: region:10606668-10606867:1
BFO_0000051: feature:10606668-10606867:1:region
SIO_000974: 36b012b1-d43a-4537-b0de-c6db4265f3b0

position:10606668:1
position: 10606668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10606867:1
position: 10606867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

36b012b1-d43a-4537-b0de-c6db4265f3b0
SIO_000300: 1
SIO_000628: feature:10606668-10606867:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10715086..10715285
location: region:10715086-10715285:1
BFO_0000051: feature:10715086-10715285:1:region
SIO_000974: 76bba441-d6f0-44ab-be4f-61adc3724366

position:10715086:1
position: 10715086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10715285:1
position: 10715285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

76bba441-d6f0-44ab-be4f-61adc3724366
SIO_000300: 1
SIO_000628: feature:10715086-10715285:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11744356..11744555
location: region:11744356-11744555:1
BFO_0000051: feature:11744356-11744555:1:region
SIO_000974: 953a4c07-45ac-4e42-9332-768ca1f2005a

position:11744356:1
position: 11744356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11744555:1
position: 11744555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

953a4c07-45ac-4e42-9332-768ca1f2005a
SIO_000300: 1
SIO_000628: feature:11744356-11744555:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12013598..12013797
location: region:12013598-12013797:1
BFO_0000051: feature:12013598-12013797:1:region
SIO_000974: a905c476-4f63-40af-be53-da58730ce0a1

position:12013598:1
position: 12013598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12013797:1
position: 12013797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a905c476-4f63-40af-be53-da58730ce0a1
SIO_000300: 1
SIO_000628: feature:12013598-12013797:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12941255..12941454
location: region:12941255-12941454:1
BFO_0000051: feature:12941255-12941454:1:region
SIO_000974: ed656ceb-5b18-4eca-8086-5d97df7a8d56

position:12941255:1
position: 12941255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12941454:1
position: 12941454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ed656ceb-5b18-4eca-8086-5d97df7a8d56
SIO_000300: 1
SIO_000628: feature:12941255-12941454:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13222386..13222585
location: region:13222386-13222585:1
BFO_0000051: feature:13222386-13222585:1:region
SIO_000974: 6fcf9433-5460-44e5-8236-4b93f27da8f5

position:13222386:1
position: 13222386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13222585:1
position: 13222585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6fcf9433-5460-44e5-8236-4b93f27da8f5
SIO_000300: 1
SIO_000628: feature:13222386-13222585:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13925301..13925500
location: region:13925301-13925500:1
BFO_0000051: feature:13925301-13925500:1:region
SIO_000974: bc00f49d-3c8c-4446-8a9a-b011b9c472d4

position:13925301:1
position: 13925301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13925500:1
position: 13925500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bc00f49d-3c8c-4446-8a9a-b011b9c472d4
SIO_000300: 1
SIO_000628: feature:13925301-13925500:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13992126..13992325
location: region:13992126-13992325:1
BFO_0000051: feature:13992126-13992325:1:region
SIO_000974: 353a310e-18d1-4bdb-8cb6-1214fb354629

position:13992126:1
position: 13992126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13992325:1
position: 13992325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

353a310e-18d1-4bdb-8cb6-1214fb354629
SIO_000300: 1
SIO_000628: feature:13992126-13992325:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18276890..18277089
location: region:18276890-18277089:1
BFO_0000051: feature:18276890-18277089:1:region
SIO_000974: d152bff1-dce2-4789-bc9b-359b0977bd1b

position:18276890:1
position: 18276890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18277089:1
position: 18277089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d152bff1-dce2-4789-bc9b-359b0977bd1b
SIO_000300: 1
SIO_000628: feature:18276890-18277089:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20069140..20069339
location: region:20069140-20069339:1
BFO_0000051: feature:20069140-20069339:1:region
SIO_000974: 49191a38-cef3-4c57-8b67-9ce6ec9cf16d

position:20069140:1
position: 20069140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20069339:1
position: 20069339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

49191a38-cef3-4c57-8b67-9ce6ec9cf16d
SIO_000300: 1
SIO_000628: feature:20069140-20069339:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22122220..22122419
location: region:22122220-22122419:1
BFO_0000051: feature:22122220-22122419:1:region
SIO_000974: 7d4cfc67-e91b-47f6-a0a2-279655e159cf

position:22122220:1
position: 22122220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22122419:1
position: 22122419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7d4cfc67-e91b-47f6-a0a2-279655e159cf
SIO_000300: 1
SIO_000628: feature:22122220-22122419:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23717473..23717672
location: region:23717473-23717672:1
BFO_0000051: feature:23717473-23717672:1:region
SIO_000974: babbeb27-205e-40ef-b1bb-7d53a314c4fe

position:23717473:1
position: 23717473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23717672:1
position: 23717672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

babbeb27-205e-40ef-b1bb-7d53a314c4fe
SIO_000300: 1
SIO_000628: feature:23717473-23717672:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23811850..23812049
location: region:23811850-23812049:1
BFO_0000051: feature:23811850-23812049:1:region
SIO_000974: ba648b8b-4c3c-4393-a5d4-68356e4054ad

position:23811850:1
position: 23811850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23812049:1
position: 23812049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ba648b8b-4c3c-4393-a5d4-68356e4054ad
SIO_000300: 1
SIO_000628: feature:23811850-23812049:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24491469..24491668
location: region:24491469-24491668:1
BFO_0000051: feature:24491469-24491668:1:region
SIO_000974: 731c08fd-5a01-4357-81be-c2506dfc03e4

position:24491469:1
position: 24491469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24491668:1
position: 24491668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

731c08fd-5a01-4357-81be-c2506dfc03e4
SIO_000300: 1
SIO_000628: feature:24491469-24491668:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25301727..25301926
location: region:25301727-25301926:1
BFO_0000051: feature:25301727-25301926:1:region
SIO_000974: b3f8c21a-3f70-40a0-82c5-17f6c24c928b

position:25301727:1
position: 25301727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25301926:1
position: 25301926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b3f8c21a-3f70-40a0-82c5-17f6c24c928b
SIO_000300: 1
SIO_000628: feature:25301727-25301926:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25345641..25345840
location: region:25345641-25345840:1
BFO_0000051: feature:25345641-25345840:1:region
SIO_000974: 750f1d21-aa71-4db0-85b5-e747f94b9223

position:25345641:1
position: 25345641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25345840:1
position: 25345840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

750f1d21-aa71-4db0-85b5-e747f94b9223
SIO_000300: 1
SIO_000628: feature:25345641-25345840:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25536388..25536587
location: region:25536388-25536587:1
BFO_0000051: feature:25536388-25536587:1:region
SIO_000974: def0987a-7889-4386-bae4-4d7a059cd3cd

position:25536388:1
position: 25536388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25536587:1
position: 25536587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

def0987a-7889-4386-bae4-4d7a059cd3cd
SIO_000300: 1
SIO_000628: feature:25536388-25536587:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25594218..25594417
location: region:25594218-25594417:1
BFO_0000051: feature:25594218-25594417:1:region
SIO_000974: 06182b3d-742c-47be-addb-aaf4b1d35981

position:25594218:1
position: 25594218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25594417:1
position: 25594417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

06182b3d-742c-47be-addb-aaf4b1d35981
SIO_000300: 1
SIO_000628: feature:25594218-25594417:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25665780..25665979
location: region:25665780-25665979:1
BFO_0000051: feature:25665780-25665979:1:region
SIO_000974: 6b7285b1-2058-46a0-a637-35af07ab9002

position:25665780:1
position: 25665780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25665979:1
position: 25665979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

6b7285b1-2058-46a0-a637-35af07ab9002
SIO_000300: 1
SIO_000628: feature:25665780-25665979:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25721367..25721566
location: region:25721367-25721566:1
BFO_0000051: feature:25721367-25721566:1:region
SIO_000974: a725b227-cdd0-4be8-8283-d99248c51014

position:25721367:1
position: 25721367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25721566:1
position: 25721566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a725b227-cdd0-4be8-8283-d99248c51014
SIO_000300: 1
SIO_000628: feature:25721367-25721566:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 25837456..25837655
location: region:25837456-25837655:1
BFO_0000051: feature:25837456-25837655:1:region
SIO_000974: 3591b358-6c87-48e8-9cca-f3af7cc260c6

position:25837456:1
position: 25837456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25837655:1
position: 25837655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3591b358-6c87-48e8-9cca-f3af7cc260c6
SIO_000300: 1
SIO_000628: feature:25837456-25837655:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26639551..26639750
location: region:26639551-26639750:1
BFO_0000051: feature:26639551-26639750:1:region
SIO_000974: 57139479-e3b4-4136-9e52-9d0bfaf9e89e

position:26639551:1
position: 26639551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26639750:1
position: 26639750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57139479-e3b4-4136-9e52-9d0bfaf9e89e
SIO_000300: 1
SIO_000628: feature:26639551-26639750:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 27224856..27225055
location: region:27224856-27225055:1
BFO_0000051: feature:27224856-27225055:1:region
SIO_000974: 59ab5bd1-a842-4214-b46b-cbead165209c

position:27224856:1
position: 27224856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27225055:1
position: 27225055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

59ab5bd1-a842-4214-b46b-cbead165209c
SIO_000300: 1
SIO_000628: feature:27224856-27225055:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28385771..28385970
location: region:28385771-28385970:1
BFO_0000051: feature:28385771-28385970:1:region
SIO_000974: 436e3519-d0e3-4e94-aaa3-b03786b2777e

position:28385771:1
position: 28385771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28385970:1
position: 28385970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

436e3519-d0e3-4e94-aaa3-b03786b2777e
SIO_000300: 1
SIO_000628: feature:28385771-28385970:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28851270..28851469
location: region:28851270-28851469:1
BFO_0000051: feature:28851270-28851469:1:region
SIO_000974: 823d8a62-d4fe-476a-b37a-b11892228db3

position:28851270:1
position: 28851270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28851469:1
position: 28851469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

823d8a62-d4fe-476a-b37a-b11892228db3
SIO_000300: 1
SIO_000628: feature:28851270-28851469:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 30686227..30686426
location: region:30686227-30686426:1
BFO_0000051: feature:30686227-30686426:1:region
SIO_000974: bf599093-5463-4561-a605-50617e60038b

position:30686227:1
position: 30686227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30686426:1
position: 30686426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

bf599093-5463-4561-a605-50617e60038b
SIO_000300: 1
SIO_000628: feature:30686227-30686426:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 31583602..31583801
location: region:31583602-31583801:1
BFO_0000051: feature:31583602-31583801:1:region
SIO_000974: 3ee5f331-5c63-45bb-8ced-ede7b3a3e861

position:31583602:1
position: 31583602
reference: sequence
type: ForwardStrandPosition
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position:31583801:1
position: 31583801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3ee5f331-5c63-45bb-8ced-ede7b3a3e861
SIO_000300: 1
SIO_000628: feature:31583602-31583801:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32416327..32416526
location: region:32416327-32416526:1
BFO_0000051: feature:32416327-32416526:1:region
SIO_000974: 2adc142f-fcc0-446a-9df8-dc0133f3f8f5

position:32416327:1
position: 32416327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32416526:1
position: 32416526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2adc142f-fcc0-446a-9df8-dc0133f3f8f5
SIO_000300: 1
SIO_000628: feature:32416327-32416526:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33721240..33721439
location: region:33721240-33721439:1
BFO_0000051: feature:33721240-33721439:1:region
SIO_000974: 76ca6552-4098-4f05-96b8-64801d051212

position:33721240:1
position: 33721240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33721439:1
position: 33721439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:33721240-33721439:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 35833376..35833575
location: region:35833376-35833575:1
BFO_0000051: feature:35833376-35833575:1:region
SIO_000974: 2dfb3071-d8ca-4731-8f6d-0a5a79cda6bc

position:35833376:1
position: 35833376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35833575:1
position: 35833575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2dfb3071-d8ca-4731-8f6d-0a5a79cda6bc
SIO_000300: 1
SIO_000628: feature:35833376-35833575:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36320570..36320769
location: region:36320570-36320769:1
BFO_0000051: feature:36320570-36320769:1:region
SIO_000974: aa609cc9-ce5c-4e96-a7cc-33d104d6651b

position:36320570:1
position: 36320570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36320769:1
position: 36320769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

aa609cc9-ce5c-4e96-a7cc-33d104d6651b
SIO_000300: 1
SIO_000628: feature:36320570-36320769:1:region

Montipora capitata genome assembly, chromosome: 13.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 13.
sequence version: OX421457.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 34804181
topology: linear
RO_0000086: SO_0000987
location: 1..34804181
location: region:1-34804181:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34804181:1
position: 34804181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34804181:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 13
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1865185..1865384
location: region:1865185-1865384:1
BFO_0000051: feature:1865185-1865384:1:region
SIO_000974: 9113cd44-2545-4f69-a621-23569a6d55af

position:1865185:1
position: 1865185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1865384:1
position: 1865384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9113cd44-2545-4f69-a621-23569a6d55af
SIO_000300: 1
SIO_000628: feature:1865185-1865384:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3241385..3241584
location: region:3241385-3241584:1
BFO_0000051: feature:3241385-3241584:1:region
SIO_000974: 7a737018-b1f0-409c-b674-25004009a110

position:3241385:1
position: 3241385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3241584:1
position: 3241584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

7a737018-b1f0-409c-b674-25004009a110
SIO_000300: 1
SIO_000628: feature:3241385-3241584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3790458..3790657
location: region:3790458-3790657:1
BFO_0000051: feature:3790458-3790657:1:region
SIO_000974: 57e61ccf-aa0f-4a8c-9ca6-a1082f17b56b

position:3790458:1
position: 3790458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3790657:1
position: 3790657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

57e61ccf-aa0f-4a8c-9ca6-a1082f17b56b
SIO_000300: 1
SIO_000628: feature:3790458-3790657:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3930407..3930606
location: region:3930407-3930606:1
BFO_0000051: feature:3930407-3930606:1:region
SIO_000974: 3f978cdd-bac8-4001-9d98-95931e94722b

position:3930407:1
position: 3930407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3930606:1
position: 3930606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3f978cdd-bac8-4001-9d98-95931e94722b
SIO_000300: 1
SIO_000628: feature:3930407-3930606:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 4475373..4475572
location: region:4475373-4475572:1
BFO_0000051: feature:4475373-4475572:1:region
SIO_000974: 2a759299-305b-4df2-8b52-d024032872f6

position:4475373:1
position: 4475373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4475572:1
position: 4475572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2a759299-305b-4df2-8b52-d024032872f6
SIO_000300: 1
SIO_000628: feature:4475373-4475572:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7828740..7828939
location: region:7828740-7828939:1
BFO_0000051: feature:7828740-7828939:1:region
SIO_000974: 8c1273c0-e9ee-4246-b2c5-94aa429dae49

position:7828740:1
position: 7828740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7828939:1
position: 7828939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8c1273c0-e9ee-4246-b2c5-94aa429dae49
SIO_000300: 1
SIO_000628: feature:7828740-7828939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8986677..8986876
location: region:8986677-8986876:1
BFO_0000051: feature:8986677-8986876:1:region
SIO_000974: 9c44b050-7cfc-485a-b800-fe045bf5787e

position:8986677:1
position: 8986677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8986876:1
position: 8986876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

9c44b050-7cfc-485a-b800-fe045bf5787e
SIO_000300: 1
SIO_000628: feature:8986677-8986876:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 10488916..10489115
location: region:10488916-10489115:1
BFO_0000051: feature:10488916-10489115:1:region
SIO_000974: b6843d37-71f4-4650-b1c8-1e2f559df0b5

position:10488916:1
position: 10488916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10489115:1
position: 10489115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b6843d37-71f4-4650-b1c8-1e2f559df0b5
SIO_000300: 1
SIO_000628: feature:10488916-10489115:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12788033..12788232
location: region:12788033-12788232:1
BFO_0000051: feature:12788033-12788232:1:region
SIO_000974: 5c746c96-97bb-44c7-a742-aca607de3365

position:12788033:1
position: 12788033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12788232:1
position: 12788232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5c746c96-97bb-44c7-a742-aca607de3365
SIO_000300: 1
SIO_000628: feature:12788033-12788232:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13002068..13002267
location: region:13002068-13002267:1
BFO_0000051: feature:13002068-13002267:1:region
SIO_000974: 97857dc6-9263-4dbc-8cc5-de112ee1501e

position:13002068:1
position: 13002068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13002267:1
position: 13002267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

97857dc6-9263-4dbc-8cc5-de112ee1501e
SIO_000300: 1
SIO_000628: feature:13002068-13002267:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 13500012..13500211
location: region:13500012-13500211:1
BFO_0000051: feature:13500012-13500211:1:region
SIO_000974: 2b41eddc-0b36-4d10-b0e6-585572fccf9e

position:13500012:1
position: 13500012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13500211:1
position: 13500211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b41eddc-0b36-4d10-b0e6-585572fccf9e
SIO_000300: 1
SIO_000628: feature:13500012-13500211:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15428866..15429065
location: region:15428866-15429065:1
BFO_0000051: feature:15428866-15429065:1:region
SIO_000974: d91ecef0-eb7e-42a3-9256-9f3b7569f7ec

position:15428866:1
position: 15428866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15429065:1
position: 15429065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d91ecef0-eb7e-42a3-9256-9f3b7569f7ec
SIO_000300: 1
SIO_000628: feature:15428866-15429065:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16825502..16825701
location: region:16825502-16825701:1
BFO_0000051: feature:16825502-16825701:1:region
SIO_000974: d08c646b-626a-4769-b499-545a8c6c05eb

position:16825502:1
position: 16825502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16825701:1
position: 16825701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d08c646b-626a-4769-b499-545a8c6c05eb
SIO_000300: 1
SIO_000628: feature:16825502-16825701:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17093617..17093816
location: region:17093617-17093816:1
BFO_0000051: feature:17093617-17093816:1:region
SIO_000974: 0f25bc77-2fc8-4d4e-9ae8-d4f067eb0d7e

position:17093617:1
position: 17093617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17093816:1
position: 17093816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0f25bc77-2fc8-4d4e-9ae8-d4f067eb0d7e
SIO_000300: 1
SIO_000628: feature:17093617-17093816:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19999563..19999762
location: region:19999563-19999762:1
BFO_0000051: feature:19999563-19999762:1:region
SIO_000974: eeca4e76-c5a8-4313-bff5-efae8f837527

position:19999563:1
position: 19999563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19999762:1
position: 19999762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

eeca4e76-c5a8-4313-bff5-efae8f837527
SIO_000300: 1
SIO_000628: feature:19999563-19999762:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20679792..20679991
location: region:20679792-20679991:1
BFO_0000051: feature:20679792-20679991:1:region
SIO_000974: ca6531d2-eb09-467e-82db-e7029804a95a

position:20679792:1
position: 20679792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20679991:1
position: 20679991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ca6531d2-eb09-467e-82db-e7029804a95a
SIO_000300: 1
SIO_000628: feature:20679792-20679991:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23070593..23070792
location: region:23070593-23070792:1
BFO_0000051: feature:23070593-23070792:1:region
SIO_000974: b179212d-2043-4333-8117-11d70f87d6b7

position:23070593:1
position: 23070593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23070792:1
position: 23070792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b179212d-2043-4333-8117-11d70f87d6b7
SIO_000300: 1
SIO_000628: feature:23070593-23070792:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23620522..23620721
location: region:23620522-23620721:1
BFO_0000051: feature:23620522-23620721:1:region
SIO_000974: 379a6a8b-4aae-4e72-8b81-2ebd16dd6474

position:23620522:1
position: 23620522
reference: sequence
type: ForwardStrandPosition
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position:23620721:1
position: 23620721
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:23620522-23620721:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 23823882..23824081
location: region:23823882-23824081:1
BFO_0000051: feature:23823882-23824081:1:region
SIO_000974: c2a65489-8d29-406b-abc2-9ef3a237c431

position:23823882:1
position: 23823882
reference: sequence
type: ForwardStrandPosition
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position:23824081:1
position: 23824081
reference: sequence
type: ForwardStrandPosition
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c2a65489-8d29-406b-abc2-9ef3a237c431
SIO_000300: 1
SIO_000628: feature:23823882-23824081:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24498028..24498227
location: region:24498028-24498227:1
BFO_0000051: feature:24498028-24498227:1:region
SIO_000974: 6e565049-a8ba-42e2-98cc-470f19679f2c

position:24498028:1
position: 24498028
reference: sequence
type: ForwardStrandPosition
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position:24498227:1
position: 24498227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:24498028-24498227:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26865228..26865427
location: region:26865228-26865427:1
BFO_0000051: feature:26865228-26865427:1:region
SIO_000974: 46cd58ec-2dca-421b-9998-701468749027

position:26865228:1
position: 26865228
reference: sequence
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position: 26865427
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:26865228-26865427:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26919727..26919926
location: region:26919727-26919926:1
BFO_0000051: feature:26919727-26919926:1:region
SIO_000974: 5babefc4-3217-4f6b-be2d-0c23c33c92a5

position:26919727:1
position: 26919727
reference: sequence
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position:26919926:1
position: 26919926
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:26919727-26919926:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:30757387-30757586:1
BFO_0000051: feature:30757387-30757586:1:region
SIO_000974: caecc05b-4b35-4638-a625-225fa2858f69

position:30757387:1
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reference: sequence
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position: 30757586
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:30757387-30757586:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 32767403..32767602
location: region:32767403-32767602:1
BFO_0000051: feature:32767403-32767602:1:region
SIO_000974: bbf91bce-b90c-45a6-b1a4-a79a8e290fad

position:32767403:1
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reference: sequence
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position:32767602:1
position: 32767602
reference: sequence
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SIO_000300: 1
SIO_000628: feature:32767403-32767602:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 33037918..33038117
location: region:33037918-33038117:1
BFO_0000051: feature:33037918-33038117:1:region
SIO_000974: e9f0edc6-2256-4956-a5b8-ea9f3a159658

position:33037918:1
position: 33037918
reference: sequence
type: ForwardStrandPosition
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position:33038117:1
position: 33038117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e9f0edc6-2256-4956-a5b8-ea9f3a159658
SIO_000300: 1
SIO_000628: feature:33037918-33038117:1:region

Montipora capitata genome assembly, chromosome: 14.
type: Entry
definition: Montipora capitata genome assembly, chromosome: 14.
sequence version: OX421458.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 30825895
topology: linear
RO_0000086: SO_0000987
location: 1..30825895
location: region:1-30825895:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30825895:1
position: 30825895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30825895:1:source
BFO_0000050: sequence
organism: Montipora capitata
chromosome: 14
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 388505..388704
location: region:388505-388704:1
BFO_0000051: feature:388505-388704:1:region
SIO_000974: 8f1e1dfb-79d1-4f10-b8a4-765cd3c39770

position:388505:1
position: 388505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388704:1
position: 388704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

8f1e1dfb-79d1-4f10-b8a4-765cd3c39770
SIO_000300: 1
SIO_000628: feature:388505-388704:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 904736..904935
location: region:904736-904935:1
BFO_0000051: feature:904736-904935:1:region
SIO_000974: 57c7e29a-cdd3-4bde-b825-57f96612c075

position:904736:1
position: 904736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904935:1
position: 904935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:904736-904935:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3632897..3633096
location: region:3632897-3633096:1
BFO_0000051: feature:3632897-3633096:1:region
SIO_000974: 87ef2af0-166d-4b88-9f61-2119432e905c

position:3632897:1
position: 3632897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3633096:1
position: 3633096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:3632897-3633096:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6074184..6074383
location: region:6074184-6074383:1
BFO_0000051: feature:6074184-6074383:1:region
SIO_000974: c3c30b15-d3e9-4f77-ae9c-2055843925d2

position:6074184:1
position: 6074184
reference: sequence
type: ForwardStrandPosition
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position:6074383:1
position: 6074383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c3c30b15-d3e9-4f77-ae9c-2055843925d2
SIO_000300: 1
SIO_000628: feature:6074184-6074383:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6497222..6497421
location: region:6497222-6497421:1
BFO_0000051: feature:6497222-6497421:1:region
SIO_000974: d71d70e0-a8b5-456d-9ac2-826345394aec

position:6497222:1
position: 6497222
reference: sequence
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position:6497421:1
position: 6497421
reference: sequence
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SIO_000300: 1
SIO_000628: feature:6497222-6497421:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:7122910-7123109:1
BFO_0000051: feature:7122910-7123109:1:region
SIO_000974: 44966646-ca7a-4b78-9f95-27bc6740f467

position:7122910:1
position: 7122910
reference: sequence
type: ForwardStrandPosition
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position:7123109:1
position: 7123109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:7122910-7123109:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:7173110-7173309:1
BFO_0000051: feature:7173110-7173309:1:region
SIO_000974: 924be619-63ff-4669-9d3f-f51eb3c3508b

position:7173110:1
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reference: sequence
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position: 7173309
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:7173110-7173309:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:9866044-9866243:1
BFO_0000051: feature:9866044-9866243:1:region
SIO_000974: 76642bd4-2e97-4068-994b-3096183716a3

position:9866044:1
position: 9866044
reference: sequence
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position:9866243:1
position: 9866243
reference: sequence
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SIO_000300: 1
SIO_000628: feature:9866044-9866243:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:12801020-12801219:1
BFO_0000051: feature:12801020-12801219:1:region
SIO_000974: 89ad627c-9dde-4744-9f87-3d1c19ac9f80

position:12801020:1
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reference: sequence
type: ForwardStrandPosition
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position:12801219:1
position: 12801219
reference: sequence
type: ForwardStrandPosition
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SIO_000300: 1
SIO_000628: feature:12801020-12801219:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:12827159-12827358:1
BFO_0000051: feature:12827159-12827358:1:region
SIO_000974: fd21f773-9612-4eda-9b89-babe09d68e60

position:12827159:1
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reference: sequence
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position: 12827358
reference: sequence
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SIO_000300: 1
SIO_000628: feature:12827159-12827358:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:13470409-13470608:1
BFO_0000051: feature:13470409-13470608:1:region
SIO_000974: ff0f197c-624d-411e-8ccc-c3534cf36c9d

position:13470409:1
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reference: sequence
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position: 13470608
reference: sequence
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SIO_000300: 1
SIO_000628: feature:13470409-13470608:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:14859165-14859364:1
BFO_0000051: feature:14859165-14859364:1:region
SIO_000974: 903c6d14-84c2-4954-994c-b18b72587ba2

position:14859165:1
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reference: sequence
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position: 14859364
reference: sequence
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SIO_000300: 1
SIO_000628: feature:14859165-14859364:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
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location: region:15727365-15727564:1
BFO_0000051: feature:15727365-15727564:1:region
SIO_000974: aa48b9f5-a8c4-4538-ad7b-254b8c23e963

position:15727365:1
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reference: sequence
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position:15727564:1
position: 15727564
reference: sequence
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SIO_000300: 1
SIO_000628: feature:15727365-15727564:1:region

assembly_gap
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subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15966565..15966764
location: region:15966565-15966764:1
BFO_0000051: feature:15966565-15966764:1:region
SIO_000974: 96d98bca-8ae2-46a7-8375-d1565cda1a2f

position:15966565:1
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reference: sequence
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position:15966764:1
position: 15966764
reference: sequence
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SIO_000300: 1
SIO_000628: feature:15966565-15966764:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 16061371..16061570
location: region:16061371-16061570:1
BFO_0000051: feature:16061371-16061570:1:region
SIO_000974: 77949ec8-19cb-4b6e-87be-50523406dbed

position:16061371:1
position: 16061371
reference: sequence
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type: ExactPosition

position:16061570:1
position: 16061570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:16061371-16061570:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17471464..17471663
location: region:17471464-17471663:1
BFO_0000051: feature:17471464-17471663:1:region
SIO_000974: 8316866d-1e9d-47f2-a11b-106000b014ed

position:17471464:1
position: 17471464
reference: sequence
type: ForwardStrandPosition
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position:17471663:1
position: 17471663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17471464-17471663:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17704200..17704399
location: region:17704200-17704399:1
BFO_0000051: feature:17704200-17704399:1:region
SIO_000974: 7ed3a4bf-f30a-409f-9854-a42648941762

position:17704200:1
position: 17704200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17704399:1
position: 17704399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:17704200-17704399:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18723320..18723519
location: region:18723320-18723519:1
BFO_0000051: feature:18723320-18723519:1:region
SIO_000974: 1ac9a3c8-b288-4687-b31c-871c0ea239bd

position:18723320:1
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reference: sequence
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type: ExactPosition

position:18723519:1
position: 18723519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ac9a3c8-b288-4687-b31c-871c0ea239bd
SIO_000300: 1
SIO_000628: feature:18723320-18723519:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19482745..19482944
location: region:19482745-19482944:1
BFO_0000051: feature:19482745-19482944:1:region
SIO_000974: f83cd1aa-a541-4c0e-b395-1ceff7bff02e

position:19482745:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19482944:1
position: 19482944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

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SIO_000300: 1
SIO_000628: feature:19482745-19482944:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 19754267..19754466
location: region:19754267-19754466:1
BFO_0000051: feature:19754267-19754466:1:region
SIO_000974: a97b7b73-8555-4f9b-ae99-ffed3d978bbb

position:19754267:1
position: 19754267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19754466:1
position: 19754466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a97b7b73-8555-4f9b-ae99-ffed3d978bbb
SIO_000300: 1
SIO_000628: feature:19754267-19754466:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21057136..21057335
location: region:21057136-21057335:1
BFO_0000051: feature:21057136-21057335:1:region
SIO_000974: a53b5501-3807-4a1d-8ee9-599254780851

position:21057136:1
position: 21057136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21057335:1
position: 21057335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a53b5501-3807-4a1d-8ee9-599254780851
SIO_000300: 1
SIO_000628: feature:21057136-21057335:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22881725..22881924
location: region:22881725-22881924:1
BFO_0000051: feature:22881725-22881924:1:region
SIO_000974: 029bc047-7f10-4eca-9b78-a6d449216bf5

position:22881725:1
position: 22881725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22881924:1
position: 22881924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

029bc047-7f10-4eca-9b78-a6d449216bf5
SIO_000300: 1
SIO_000628: feature:22881725-22881924:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 24903818..24904017
location: region:24903818-24904017:1
BFO_0000051: feature:24903818-24904017:1:region
SIO_000974: c4548cdb-8b72-44c6-bbff-6b122eb8ef67

position:24903818:1
position: 24903818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24904017:1
position: 24904017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c4548cdb-8b72-44c6-bbff-6b122eb8ef67
SIO_000300: 1
SIO_000628: feature:24903818-24904017:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28057313..28057512
location: region:28057313-28057512:1
BFO_0000051: feature:28057313-28057512:1:region
SIO_000974: 99a24c67-9387-46ee-a1fc-2c92a183ffd8

position:28057313:1
position: 28057313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28057512:1
position: 28057512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

99a24c67-9387-46ee-a1fc-2c92a183ffd8
SIO_000300: 1
SIO_000628: feature:28057313-28057512:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 28835925..28836124
location: region:28835925-28836124:1
BFO_0000051: feature:28835925-28836124:1:region
SIO_000974: 1b3fbc06-a12e-4cae-909b-88054977bfd7

position:28835925:1
position: 28835925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28836124:1
position: 28836124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1b3fbc06-a12e-4cae-909b-88054977bfd7
SIO_000300: 1
SIO_000628: feature:28835925-28836124:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 46704
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 29626903..29627102
location: region:29626903-29627102:1
BFO_0000051: feature:29626903-29627102:1:region
SIO_000974: e623dd1d-1a65-4ba5-b525-94cca7726d5e

position:29626903:1
position: 29626903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29627102:1
position: 29627102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e623dd1d-1a65-4ba5-b525-94cca7726d5e
SIO_000300: 1
SIO_000628: feature:29626903-29627102:1:region

Montipora capitata genome assembly, organelle: mitochondrion.
type: Entry
definition: Montipora capitata genome assembly, organelle: mitochondrion.
sequence version: OX421459.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: mitochondrion Montipora capitata
organism: Montipora capitata
taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Acroporidae; Montipora.
reference: 1
comment: The assembly jaMonCapi2.1 is based on 52x PacBio data and Arima2\nHi-C data\ngenerated by the Aquatic Symbiosis Genomics Project\n(https://www.aquaticsymbiosisgenomics.org/). The assembly process\nincluded\nthe following sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data\nhave\nbeen named in order of size. the exact size of the repeat on\nchromosome 13\n(10-25 Mbp) is unknown

sequence
subclass of: SO_0000001
sequence length: 17868
topology: linear
RO_0000086: SO_0000987
location: 1..17868
location: region:1-17868:1
RO_0002162: 46704

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17868:1
position: 17868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17868:1:source
BFO_0000050: sequence
organism: Montipora capitata
organelle: mitochondrion
mol type: genomic DNA

Eilema caniola genome assembly, chromosome: Z.
type: Entry
definition: Eilema caniola genome assembly, chromosome: Z.
sequence version: OX421460.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 51636824
topology: linear
RO_0000086: SO_0000987
location: 1..51636824
location: region:1-51636824:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51636824:1
position: 51636824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-51636824:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: Z
mol type: genomic DNA

987929
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2561539..2561738
location: region:2561539-2561738:1
BFO_0000051: feature:2561539-2561738:1:region
SIO_000974: d7bebcb7-b212-47f6-b43f-a86c2fc60698

position:2561539:1
position: 2561539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2561738:1
position: 2561738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

d7bebcb7-b212-47f6-b43f-a86c2fc60698
SIO_000300: 1
SIO_000628: feature:2561539-2561738:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 18715740..18715939
location: region:18715740-18715939:1
BFO_0000051: feature:18715740-18715939:1:region
SIO_000974: f2dc37d6-c816-4126-927a-13b70215df6e

position:18715740:1
position: 18715740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18715939:1
position: 18715939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f2dc37d6-c816-4126-927a-13b70215df6e
SIO_000300: 1
SIO_000628: feature:18715740-18715939:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 36175903..36176102
location: region:36175903-36176102:1
BFO_0000051: feature:36175903-36176102:1:region
SIO_000974: 102eb616-7450-495d-b85f-2109323d8e38

position:36175903:1
position: 36175903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36176102:1
position: 36176102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

102eb616-7450-495d-b85f-2109323d8e38
SIO_000300: 1
SIO_000628: feature:36175903-36176102:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 45016286..45016485
location: region:45016286-45016485:1
BFO_0000051: feature:45016286-45016485:1:region
SIO_000974: 1a424999-0b6d-41d8-97c5-6258e4e37f5c

position:45016286:1
position: 45016286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45016485:1
position: 45016485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a424999-0b6d-41d8-97c5-6258e4e37f5c
SIO_000300: 1
SIO_000628: feature:45016286-45016485:1:region

Eilema caniola genome assembly, chromosome: W.
type: Entry
definition: Eilema caniola genome assembly, chromosome: W.
sequence version: OX421461.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 18541249
topology: linear
RO_0000086: SO_0000987
location: 1..18541249
location: region:1-18541249:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18541249:1
position: 18541249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18541249:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: W
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 405930..406129
location: region:405930-406129:1
BFO_0000051: feature:405930-406129:1:region
SIO_000974: ceb13a24-7334-4455-bbd3-77be3880aed6

position:405930:1
position: 405930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:406129:1
position: 406129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ceb13a24-7334-4455-bbd3-77be3880aed6
SIO_000300: 1
SIO_000628: feature:405930-406129:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7750130..7750329
location: region:7750130-7750329:1
BFO_0000051: feature:7750130-7750329:1:region
SIO_000974: ad3594c4-2bd7-42c8-b74d-43f977144b3f

position:7750130:1
position: 7750130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7750329:1
position: 7750329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ad3594c4-2bd7-42c8-b74d-43f977144b3f
SIO_000300: 1
SIO_000628: feature:7750130-7750329:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 15060222..15060421
location: region:15060222-15060421:1
BFO_0000051: feature:15060222-15060421:1:region
SIO_000974: 1a009059-7444-4a9f-abcd-286e5933127e

position:15060222:1
position: 15060222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15060421:1
position: 15060421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1a009059-7444-4a9f-abcd-286e5933127e
SIO_000300: 1
SIO_000628: feature:15060222-15060421:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17426646..17426845
location: region:17426646-17426845:1
BFO_0000051: feature:17426646-17426845:1:region
SIO_000974: 33cb9b11-7b57-4b9e-b181-a190bd4ed7ce

position:17426646:1
position: 17426646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17426845:1
position: 17426845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

33cb9b11-7b57-4b9e-b181-a190bd4ed7ce
SIO_000300: 1
SIO_000628: feature:17426646-17426845:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17775318..17775517
location: region:17775318-17775517:1
BFO_0000051: feature:17775318-17775517:1:region
SIO_000974: a9dc6fff-1c79-4f7d-8d23-2f6a7d5e8310

position:17775318:1
position: 17775318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17775517:1
position: 17775517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a9dc6fff-1c79-4f7d-8d23-2f6a7d5e8310
SIO_000300: 1
SIO_000628: feature:17775318-17775517:1:region

Eilema caniola genome assembly, chromosome: 1.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 1.
sequence version: OX421462.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 31631174
topology: linear
RO_0000086: SO_0000987
location: 1..31631174
location: region:1-31631174:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31631174:1
position: 31631174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31631174:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 1
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 797786..797985
location: region:797786-797985:1
BFO_0000051: feature:797786-797985:1:region
SIO_000974: fc40a70b-9218-4ba6-87fd-55dd078b7e67

position:797786:1
position: 797786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797985:1
position: 797985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fc40a70b-9218-4ba6-87fd-55dd078b7e67
SIO_000300: 1
SIO_000628: feature:797786-797985:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 1246181..1246380
location: region:1246181-1246380:1
BFO_0000051: feature:1246181-1246380:1:region
SIO_000974: 69265364-8e3b-4478-8a30-9fef2af18933

position:1246181:1
position: 1246181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1246380:1
position: 1246380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

69265364-8e3b-4478-8a30-9fef2af18933
SIO_000300: 1
SIO_000628: feature:1246181-1246380:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2010587..2010786
location: region:2010587-2010786:1
BFO_0000051: feature:2010587-2010786:1:region
SIO_000974: cea6a10e-1c2f-473e-ab70-9911b8a1e109

position:2010587:1
position: 2010587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2010786:1
position: 2010786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

cea6a10e-1c2f-473e-ab70-9911b8a1e109
SIO_000300: 1
SIO_000628: feature:2010587-2010786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21441161..21441360
location: region:21441161-21441360:1
BFO_0000051: feature:21441161-21441360:1:region
SIO_000974: 05edf299-7578-46d2-8390-22b613b6a907

position:21441161:1
position: 21441161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21441360:1
position: 21441360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

05edf299-7578-46d2-8390-22b613b6a907
SIO_000300: 1
SIO_000628: feature:21441161-21441360:1:region

Eilema caniola genome assembly, chromosome: 2.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 2.
sequence version: OX421463.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 30896475
topology: linear
RO_0000086: SO_0000987
location: 1..30896475
location: region:1-30896475:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30896475:1
position: 30896475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30896475:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 2
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6860891..6861090
location: region:6860891-6861090:1
BFO_0000051: feature:6860891-6861090:1:region
SIO_000974: 5c4bee0b-57b7-47de-a105-509503884d15

position:6860891:1
position: 6860891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6861090:1
position: 6861090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5c4bee0b-57b7-47de-a105-509503884d15
SIO_000300: 1
SIO_000628: feature:6860891-6861090:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7024367..7024566
location: region:7024367-7024566:1
BFO_0000051: feature:7024367-7024566:1:region
SIO_000974: a44c78f1-05cd-4426-8f54-2a5af9d3fdec

position:7024367:1
position: 7024367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7024566:1
position: 7024566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a44c78f1-05cd-4426-8f54-2a5af9d3fdec
SIO_000300: 1
SIO_000628: feature:7024367-7024566:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 11513722..11513921
location: region:11513722-11513921:1
BFO_0000051: feature:11513722-11513921:1:region
SIO_000974: 03a37539-f216-48d7-941f-07764c400dc8

position:11513722:1
position: 11513722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11513921:1
position: 11513921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

03a37539-f216-48d7-941f-07764c400dc8
SIO_000300: 1
SIO_000628: feature:11513722-11513921:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20649394..20649593
location: region:20649394-20649593:1
BFO_0000051: feature:20649394-20649593:1:region
SIO_000974: f042d443-8266-4764-b4a6-772297d4a194

position:20649394:1
position: 20649394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20649593:1
position: 20649593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

f042d443-8266-4764-b4a6-772297d4a194
SIO_000300: 1
SIO_000628: feature:20649394-20649593:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22422703..22422902
location: region:22422703-22422902:1
BFO_0000051: feature:22422703-22422902:1:region
SIO_000974: 5a0b702c-7344-461c-9933-82bbba6a2ead

position:22422703:1
position: 22422703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22422902:1
position: 22422902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

5a0b702c-7344-461c-9933-82bbba6a2ead
SIO_000300: 1
SIO_000628: feature:22422703-22422902:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26076581..26076780
location: region:26076581-26076780:1
BFO_0000051: feature:26076581-26076780:1:region
SIO_000974: 4c91a1b4-f36b-4f43-8197-7aa34f4bbffb

position:26076581:1
position: 26076581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26076780:1
position: 26076780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

4c91a1b4-f36b-4f43-8197-7aa34f4bbffb
SIO_000300: 1
SIO_000628: feature:26076581-26076780:1:region

Eilema caniola genome assembly, chromosome: 3.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 3.
sequence version: OX421464.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 29741854
topology: linear
RO_0000086: SO_0000987
location: 1..29741854
location: region:1-29741854:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29741854:1
position: 29741854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29741854:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 3
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6632870..6633069
location: region:6632870-6633069:1
BFO_0000051: feature:6632870-6633069:1:region
SIO_000974: 0c2a09ee-5933-44ec-bdb9-e5afaa6a0e0f

position:6632870:1
position: 6632870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6633069:1
position: 6633069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

0c2a09ee-5933-44ec-bdb9-e5afaa6a0e0f
SIO_000300: 1
SIO_000628: feature:6632870-6633069:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 17630447..17630646
location: region:17630447-17630646:1
BFO_0000051: feature:17630447-17630646:1:region
SIO_000974: e620678e-4514-4603-9d7e-ff294476bebf

position:17630447:1
position: 17630447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17630646:1
position: 17630646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

e620678e-4514-4603-9d7e-ff294476bebf
SIO_000300: 1
SIO_000628: feature:17630447-17630646:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22319001..22319200
location: region:22319001-22319200:1
BFO_0000051: feature:22319001-22319200:1:region
SIO_000974: 2e3341ff-42e7-4645-b017-9ea2553de2ea

position:22319001:1
position: 22319001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22319200:1
position: 22319200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2e3341ff-42e7-4645-b017-9ea2553de2ea
SIO_000300: 1
SIO_000628: feature:22319001-22319200:1:region

Eilema caniola genome assembly, chromosome: 4.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 4.
sequence version: OX421465.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 29219962
topology: linear
RO_0000086: SO_0000987
location: 1..29219962
location: region:1-29219962:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29219962:1
position: 29219962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29219962:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 4
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 8176051..8176250
location: region:8176051-8176250:1
BFO_0000051: feature:8176051-8176250:1:region
SIO_000974: 1960eff9-850a-474f-9031-9f7906f9a390

position:8176051:1
position: 8176051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8176250:1
position: 8176250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1960eff9-850a-474f-9031-9f7906f9a390
SIO_000300: 1
SIO_000628: feature:8176051-8176250:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9689036..9689235
location: region:9689036-9689235:1
BFO_0000051: feature:9689036-9689235:1:region
SIO_000974: 351f2528-9c5a-4c7c-89b2-b9356b1529d7

position:9689036:1
position: 9689036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9689235:1
position: 9689235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

351f2528-9c5a-4c7c-89b2-b9356b1529d7
SIO_000300: 1
SIO_000628: feature:9689036-9689235:1:region

Eilema caniola genome assembly, chromosome: 5.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 5.
sequence version: OX421466.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 29134633
topology: linear
RO_0000086: SO_0000987
location: 1..29134633
location: region:1-29134633:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29134633:1
position: 29134633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29134633:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 5
mol type: genomic DNA

Eilema caniola genome assembly, chromosome: 6.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 6.
sequence version: OX421467.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 29092648
topology: linear
RO_0000086: SO_0000987
location: 1..29092648
location: region:1-29092648:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29092648:1
position: 29092648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29092648:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 6
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 2692385..2692584
location: region:2692385-2692584:1
BFO_0000051: feature:2692385-2692584:1:region
SIO_000974: c63c27fc-5dbc-4dba-97d3-aab86a7080cb

position:2692385:1
position: 2692385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2692584:1
position: 2692584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

c63c27fc-5dbc-4dba-97d3-aab86a7080cb
SIO_000300: 1
SIO_000628: feature:2692385-2692584:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6896118..6896317
location: region:6896118-6896317:1
BFO_0000051: feature:6896118-6896317:1:region
SIO_000974: 1ca0374f-4ed8-42d5-92ff-f75aa595ab27

position:6896118:1
position: 6896118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6896317:1
position: 6896317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

1ca0374f-4ed8-42d5-92ff-f75aa595ab27
SIO_000300: 1
SIO_000628: feature:6896118-6896317:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 20828055..20828254
location: region:20828055-20828254:1
BFO_0000051: feature:20828055-20828254:1:region
SIO_000974: 2b3759c8-35f7-4116-8061-abb0dfa78fd6

position:20828055:1
position: 20828055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20828254:1
position: 20828254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

2b3759c8-35f7-4116-8061-abb0dfa78fd6
SIO_000300: 1
SIO_000628: feature:20828055-20828254:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 21383440..21383639
location: region:21383440-21383639:1
BFO_0000051: feature:21383440-21383639:1:region
SIO_000974: 16134897-c64f-4272-96eb-83769d6c91c4

position:21383440:1
position: 21383440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21383639:1
position: 21383639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16134897-c64f-4272-96eb-83769d6c91c4
SIO_000300: 1
SIO_000628: feature:21383440-21383639:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22742640..22742839
location: region:22742640-22742839:1
BFO_0000051: feature:22742640-22742839:1:region
SIO_000974: 3cd61389-f22e-40bf-9a80-0f274ba94d3b

position:22742640:1
position: 22742640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22742839:1
position: 22742839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

3cd61389-f22e-40bf-9a80-0f274ba94d3b
SIO_000300: 1
SIO_000628: feature:22742640-22742839:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26833029..26833228
location: region:26833029-26833228:1
BFO_0000051: feature:26833029-26833228:1:region
SIO_000974: 785b8ae7-2083-4fbc-b892-16ffe541089d

position:26833029:1
position: 26833029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26833228:1
position: 26833228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

785b8ae7-2083-4fbc-b892-16ffe541089d
SIO_000300: 1
SIO_000628: feature:26833029-26833228:1:region

Eilema caniola genome assembly, chromosome: 7.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 7.
sequence version: OX421468.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 28389510
topology: linear
RO_0000086: SO_0000987
location: 1..28389510
location: region:1-28389510:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28389510:1
position: 28389510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28389510:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 7
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 3667573..3667772
location: region:3667573-3667772:1
BFO_0000051: feature:3667573-3667772:1:region
SIO_000974: a4830857-db98-4b66-8495-3d4ae5b2edc4

position:3667573:1
position: 3667573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3667772:1
position: 3667772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a4830857-db98-4b66-8495-3d4ae5b2edc4
SIO_000300: 1
SIO_000628: feature:3667573-3667772:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 7128615..7128814
location: region:7128615-7128814:1
BFO_0000051: feature:7128615-7128814:1:region
SIO_000974: fbb0921b-0a5d-45bb-a812-bba2cd33548e

position:7128615:1
position: 7128615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7128814:1
position: 7128814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

fbb0921b-0a5d-45bb-a812-bba2cd33548e
SIO_000300: 1
SIO_000628: feature:7128615-7128814:1:region

Eilema caniola genome assembly, chromosome: 8.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 8.
sequence version: OX421469.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 28094967
topology: linear
RO_0000086: SO_0000987
location: 1..28094967
location: region:1-28094967:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28094967:1
position: 28094967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28094967:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 8
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 9819539..9819738
location: region:9819539-9819738:1
BFO_0000051: feature:9819539-9819738:1:region
SIO_000974: af400d35-3ff0-4f8d-8cf9-70976991aada

position:9819539:1
position: 9819539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9819738:1
position: 9819738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

af400d35-3ff0-4f8d-8cf9-70976991aada
SIO_000300: 1
SIO_000628: feature:9819539-9819738:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 12400704..12400903
location: region:12400704-12400903:1
BFO_0000051: feature:12400704-12400903:1:region
SIO_000974: a8961b41-64bf-457c-8093-6a00ac80b0c3

position:12400704:1
position: 12400704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12400903:1
position: 12400903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a8961b41-64bf-457c-8093-6a00ac80b0c3
SIO_000300: 1
SIO_000628: feature:12400704-12400903:1:region

Eilema caniola genome assembly, chromosome: 9.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 9.
sequence version: OX421470.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 27854242
topology: linear
RO_0000086: SO_0000987
location: 1..27854242
location: region:1-27854242:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27854242:1
position: 27854242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27854242:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 9
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6127315..6127514
location: region:6127315-6127514:1
BFO_0000051: feature:6127315-6127514:1:region
SIO_000974: b8bfde30-628e-4889-a270-60c56ffcbfb3

position:6127315:1
position: 6127315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6127514:1
position: 6127514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

b8bfde30-628e-4889-a270-60c56ffcbfb3
SIO_000300: 1
SIO_000628: feature:6127315-6127514:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 14718864..14719063
location: region:14718864-14719063:1
BFO_0000051: feature:14718864-14719063:1:region
SIO_000974: 16247182-cad9-482d-bb4f-bd19e7cd9a95

position:14718864:1
position: 14718864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14719063:1
position: 14719063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

16247182-cad9-482d-bb4f-bd19e7cd9a95
SIO_000300: 1
SIO_000628: feature:14718864-14719063:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 22254761..22254960
location: region:22254761-22254960:1
BFO_0000051: feature:22254761-22254960:1:region
SIO_000974: a1f04a8f-4b65-4dac-9a2d-c7bdea005db0

position:22254761:1
position: 22254761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22254960:1
position: 22254960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

a1f04a8f-4b65-4dac-9a2d-c7bdea005db0
SIO_000300: 1
SIO_000628: feature:22254761-22254960:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 26255961..26256160
location: region:26255961-26256160:1
BFO_0000051: feature:26255961-26256160:1:region
SIO_000974: 28b57dcf-f7cf-497a-a6fc-7fa3ababf9e8

position:26255961:1
position: 26255961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26256160:1
position: 26256160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

28b57dcf-f7cf-497a-a6fc-7fa3ababf9e8
SIO_000300: 1
SIO_000628: feature:26255961-26256160:1:region

Eilema caniola genome assembly, chromosome: 10.
type: Entry
definition: Eilema caniola genome assembly, chromosome: 10.
sequence version: OX421471.1
sequence date: 2023-02-04
sequence: sequence
division: INV
source: Eilema caniola
organism: Eilema caniola
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema.
reference: 1
comment: The assembly ilEilCani1.1 is based on 39x PacBio data and Arima2\nHi-C data\ngenerated by the Darwin Tree of Life Project\n(https://www.darwintreeoflife.org/). The assembly process included\nthe\nfollowing sequence of steps: initial PacBio assembly generation\nwith\nHifiasm, retained haplotig separation with purge_dups, and Hi-C\nbased\nscaffolding with YaHS. The mitochondrial genome was assembled using\nMitoHiFi. Finally, the primary assembly was analysed and manually\nimproved\nusing rapid curation. Chromosome-scale scaffolds confirmed by the\nHi-C data\nhave been named in order of size. The order and orientation of the\nW\nchromosome is or uncertain order and orientation.

sequence
subclass of: SO_0000001
sequence length: 27272723
topology: linear
RO_0000086: SO_0000987
location: 1..27272723
location: region:1-27272723:1
RO_0002162: 987929

1
journal: Submitted (02-FEB-2023) to the INSDC. WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27272723:1
position: 27272723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27272723:1:source
BFO_0000050: sequence
organism: Eilema caniola
chromosome: 10
mol type: genomic DNA

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 987929
estimated length: 200
gap type: unknown
BFO_0000050: sequence
location: 6842915..6843114
location: region:6842915-6843114:1
BFO_0000051: feature:6842915-6843114:1:region
SIO_000974: 92933709-4d10-49c3-a642-9524cb4ae746

position:6842915:1
position: 6842915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6843114:1
position: 6843114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

92933709-4d10-49c3-a642-9524cb4ae746
SIO_000300: 1
SIO_000628: feature:6842915-6843114:1:region