home > bioproject > PRJDB10257
identifier PRJDB10257
type bioproject
sameAs
organism Homo sapiens
title Analysis of astrocyte precursor cells in Down syndrome (RNA-seq)
description Innovative model system for studying the biology of Down syndrome (DS) has been developed using DS-specific iPSCs and human X‐inactivation gene, XIST. In this cell line, XIST was inserted into one copy of chromosome 21 in DS iPSCs, and a long noncoding RNA induced a series of chromatin modifications that stably silence gene transcription across whole chromosome in cis. Given that expression of XIST RNA is regulated by tetracycline inducible system, this genome silencing technology enables us to investigate the correlation among genomic expression changes, the accumulation of H3K27me3 and cellular phenotypes in DS, without thelimitation caused by the transcriptional heterogeneity and differences among cell lines. Analysis of human brains with DS revealed that astrocytes are more abundant and morphologically more mature than those of age-matched controls. Moreover, astrocytes from DS mouse models indeed exhibitedreduced activities of cholinergic neurons, altered calcium homeostasis and defective regulation of cell proliferation, raising the possibility of a direct contribution of astrocytes to DS pathophysiology. To investigate the molecular feature of DS pathology, we focused on the iPSC-derived astrocyte precursor cell (APC) proliferation and its key regulator. Taking advantage of XIST-induced chromosome silencing technique, comparative analysis of gene expression profiles and proliferativephenotypes on common genetic background was performed. Dox-removal lines were also used to perform the assays.
data type Transcriptome or Gene Expression
publication
properties 
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dbXrefs
sra-run  DRR237911DRR237912DRR237913DRR237914DRR237915DRR237916DRR237917DRR237918DRR237919DRR237920 More
sra-submission  DRA010528
biosample  SAMD00236138SAMD00236139SAMD00236140SAMD00236141SAMD00236142SAMD00236143SAMD00236144SAMD00236145SAMD00236146SAMD00236147 More
sra-study  DRP007177
sra-sample  DRS180061DRS180062DRS180063DRS180064DRS180065DRS180066DRS180067DRS180068DRS180069DRS180070 More
sra-experiment  DRX228083DRX228084DRX228085DRX228086DRX228087DRX228088DRX228089DRX228090DRX228091DRX228092 More
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status public
visibility unrestricted-access
dateCreated 2020-07-09T05:17:03+09:00
dateModified 2021-04-16T13:06:30+09:00
datePublished 2021-04-16T13:06:29+09:00