home > bioproject > PRJDB10258
identifier PRJDB10258
type bioproject
sameAs
organism Homo sapiens
title Analysis of astrocyte precursor cells in Down syndrome (ChIP-seq)
description Innovative model system for studying the biology of Down syndrome (DS) has been developed using DS-specific iPSCs and human X‐inactivation gene, XIST. In this cell line, XIST was inserted into one copy of chromosome 21 in DS iPSCs, and a long noncoding RNA induced a series of chromatin modifications that stably silence gene transcription across whole chromosome in cis. Given that expression of XIST RNA is regulated by tetracycline inducible system, this genome silencing technology enables us to investigate the correlation among genomic expression changes, the accumulation of H3K27me3 and cellular phenotypes in DS, without the limitation caused by the transcriptional heterogeneity and differences among cell lines. Analysis of human brains with DS revealed that astrocytes are more abundant and morphologically more mature than those of age-matched controls. Moreover, astrocytes from DS mouse models indeed exhibited reduced activities of cholinergic neurons, altered calcium homeostasis and defective regulation of cell proliferation, raising the possibility of a direct contribution of astrocytes to DS pathophysiology. To investigate the molecular feature of DS pathology, we focused on the iPSC-derived astrocyte precursor cell (APC) proliferation and its key regulator. Taking advantage of XIST-induced chromosome silencing technique, comparative analysis of ChIP-seq data of H3K27me3 and proliferative phenotypes on common genetic background was performed. Dox-removal lines were also used to perform the assays.
data type ChIP-seq
publication
properties 
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dbXrefs
sra-run  DRR237923DRR237924DRR237925DRR237926DRR237927DRR237928DRR237929DRR237930DRR237931DRR237932 More
sra-submission  DRA010529
biosample  SAMD00236150SAMD00236151SAMD00236152SAMD00236153SAMD00236154SAMD00236155SAMD00236156SAMD00236157SAMD00236158SAMD00236159 More
sra-study  DRP007178
sra-sample  DRS180073DRS180074DRS180075DRS180076DRS180077DRS180078DRS180079DRS180080DRS180081DRS180082 More
sra-experiment  DRX228095DRX228096DRX228097DRX228098DRX228099DRX228100DRX228101DRX228102DRX228103DRX228104 More
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status public
visibility unrestricted-access
dateCreated 2020-07-09T05:19:17+09:00
dateModified 2021-04-16T13:06:29+09:00
datePublished 2021-04-16T13:06:29+09:00