home > bioproject > PRJDB1397
identifier PRJDB1397
type bioproject
sameAs
organism Solanum lycopersicum
title Tomato whole-genome re-sequencing
description Single nucleotide polymorphism (SNP) markers covering the whole genome of cultivated tomato were developed by re-sequencing of the genomes of cultivated tomato with the ABI-SOLiD 5500xl sequencer. Sequence reads covering the genome for 6 tomato lines were obtained, and mapped on the tomato reference genomes (SL2.40) to detect approximately 1.5 million SNP candidates.
data type Genome Sequencing
publication
23903436
grant
Genomics for Agricultural Innovation Foundation By Ministry of Agriculture, Forestry, and Fisheries of Japan
external link
Kazusa Tomato Genomics DataBase (KatomicsDB)
properties 
{...}
dbXrefs
sra-run  DRR012625DRR012626DRR012627DRR012628DRR012629DRR012630DRR012631DRR012632DRR012633DRR012634 More
sra-submission  DRA001017DRA001018DRA001019DRA001020DRA001021DRA001022
biosample  SAMD00012957SAMD00008876SAMD00013833SAMD00012848SAMD00013332SAMD00000709
sra-study  DRP001059DRP001060DRP001061DRP001062DRP001063DRP001064
sra-sample  DRS011399DRS011400DRS011401DRS011402DRS011403DRS011404
sra-experiment  DRX011575DRX011576DRX011577DRX011578DRX011579DRX011580DRX011581DRX011582DRX011583DRX011584 More
distribution JSONJSON-LD
status public
visibility unrestricted-access
dateCreated 2013-07-18T01:20:46+0000
dateModified 2013-08-06T03:26:24+0000
datePublished 2013-08-06T03:26:24+0000