| identifier |
PRJDB1728 |
| type |
bioproject |
| sameAs |
|
| organism |
Glycine max
|
| title |
A high density soybean genetic map by SLAF sequence |
| description |
A genetic map provides an important foundation for quantitative trait loci (QTL) fine mapping. However, the utility of genetic linkage maps rests on the types and numbers of polymorphic markers used. Next generation sequencing technologymakes it possible to obtain thousands of SNPs throughout the genome that arepotential markers for high-density genetic maps. Consequently, several cheapmethods for SNP discovery and high throughput genotyping have been developed,such as RADseq (restriction site-associated sequencing), double digestRADseq, and two-enzyme genotyping-by-sequencing (GBS). Recently, Sun et al. developed specific length amplified fragment (SLAF)sequencing (SLAF-seq) as a high-resolution strategy for large-scale de novo SNP discovery and genotyping. This approach has been successfully used to create a genetic map forcommon carp (Cyprinus carpio L.); itwas the highest-density genetic map yet for any organism without a referencegenome sequence. In this study, we used SLAF-seq to generate genotype data and subsequentlyconstructed a high-density genetic map of soybean. |
| data type |
Phenotype and Genotype
|
| publication |
|
| properties ▽ |
{...}
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| dbXrefs |
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| distribution |
JSONJSON-LD
|
| Download |
|
| status |
public |
| visibility |
unrestricted-access |
| dateCreated |
2014-04-10T09:11:51+09:00 |
| dateModified |
2016-09-15T01:06:22+09:00 |
| datePublished |
2016-05-08T13:07:54+09:00 |