home > bioproject > PRJDB2394
identifier PRJDB2394
type bioproject
sra-study  DRP001124
organism Hepatitis C virus
title Prevalence of hepatitis C virus subgenotypes 1a and 1b in Japanese patients: ultra-deep sequencing analysis of HCV NS5B genotype-specific region
description To determine HCV subgenotype 1a or 1b in Japanese patients infected with HCV genotype 1, real-time PCR-based method and Sanger method were used for the HCV NS5B region. HCV subgenotypes were determined in 90% by real-time PCR-based method. We also analyzed the specific probe regions for HCV subgenotypes 1a and 1b using ultra-deep sequencing, and uncovered mutations that could not be revealed using direct-sequencing by Sanger method. We estimated the prevalence of HCV subgenotype 1a as ~1% of HCV genotype 1 patients in Japan.
data type DDBJ SRA Study
external link
sra-run  DRR013280DRR013281DRR013282DRR013283DRR013284DRR013285DRR013286DRR013287DRR013288
sra-submission  DRA001077
biosample  SAMD00010903SAMD00010905SAMD00010910SAMD00010909SAMD00010904SAMD00010902SAMD00010907SAMD00010908SAMD00010906
sra-study  DRP001124
sra-sample  DRS011979DRS011980DRS011981DRS011982DRS011983DRS011984DRS011985DRS011986DRS011987
sra-experiment  DRX012108DRX012109DRX012110DRX012111DRX012112DRX012113DRX012114DRX012115DRX012116
distribution JSONJSON-LD
status public
visibility unrestricted-access
dateCreated 2014-05-12T00:46:27+0000
dateModified 2014-05-12T00:46:27+0000
datePublished 2014-05-12T00:46:27+0000