home > bioproject > PRJDB2900
identifier PRJDB2900
type bioproject
sameAs
organism Mus musculus
title HMGA2 blocks local expansion of Polycomb domains and timed repression of neurogenic genes
description During normal development, cells become gradually and irreversibly committed to their specific fate and lose the potential to generate other cell types. Polycomb group proteins (PcG) play a central role in repressing lineage specific genes and limiting differentiation capacity of stem cell during development. Although PcG repress their target genes dynamically during development through Histone H3K27trimethylation (H3K27me3), it is unclear what triggers PcG mediated repression. Here we found that the timed local expansion of H3K27me3 domain into the gene coding regions triggers the timed repression of neurogenic genes at the end of the neurogenic phase. We found that H3K27me3 marks already reside at the upstream intergenic regions even when these genes are expressed. The timed expansion of these H3K27me3 in the late developmental stage is mediated by the release of HMGA proteins, which bind to the border of the H3K27me3 domain in early stages.
data type Epigenomics Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR049388DRR049389DRR049390DRR049391DRR147442DRR147443DRR147444DRR147445DRR147446DRR147447 More
sra-submission  DRA004166DRA007186DRA014924
biosample  SAMD00043267SAMD00043268SAMD00043269SAMD00043270SAMD00017616SAMD00017621SAMD00017626SAMD00017630SAMD00546452SAMD00546453
sra-study  DRP004383
sra-sample  DRS073115DRS073116DRS073117DRS073118DRS073098DRS073099DRS073100DRS073101DRS262078DRS262079
sra-experiment  DRX044441DRX044442DRX044443DRX044444DRX138234DRX138235DRX138236DRX138237DRX138238DRX138239 More
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status public
visibility unrestricted-access
dateCreated 2014-06-02T08:43:23+09:00
dateModified 2018-08-03T13:04:00+09:00
datePublished 2018-08-03T13:04:00+09:00