home > bioproject > PRJDB2917
identifier PRJDB2917
type bioproject
sameAs
organism rhizosphere metagenome
title Contrasting diversity and host association of ectomycorrhizal basidiomycetes versus root-associated ascomycetes in a dipterocarp rainforest
description Ectomycorrhizal basidiomycetes and root-associated ascomycetes, including root-endophytic ascomycetes, are one of the most diverse and important belowground plant symbionts in dipterocarp rainforests. Our study aimed to compare the biodiversity, host association pattern, and community structure of ectomycorrhizal basidiomycetes with those of root-associated ascomycetes in a lowland dipterocarp rainforest in Southeast Asia. The host-plant chloroplast large-subunit of ribulose-1,5-bisphosphate caboxylase/oxygenase (rbcL) region, and fungal internal transcribed spacer 2 (ITS2) region were sequenced using a tag-encoded, massively parallel 454 pyrosequencing analysis to identify host plant and root-associated fungal taxa in root samples. In total, 1245 ascomycetous and 127 putative ectomycorrhizal basidiomycetous taxa were detected from 442 root samples. The putative ectomycorrhizal basidiomycetes were likely to be associated with phylogenetically closely related dipterocarp taxa to greater or lesser extents, whereas host association patterns of the root-associated ascomycetes were much less distinct. The community structure of the putative ectomycorrhizal basidiomycetes was possibly more influenced by the host genetic distances than that of the root-associated ascomycetes. This study also indicated that in dipterocarp rainforests, root-associated ascomycetes were characterized by high biodiversity and indistinct host association patterns, whereas ectomycorrhizal fungi showed less biodiversity and a strong host phylogenetic preference for dipterocarp trees. Our findings suggested that root-associated ascomycetes (e.g., root-endophytic ascomycetes, may have biodiversity hotspots in the tropics, whereas biodiversity of ectomycorrhizal basidiomycetes increased with host phylogenetic diversity.
data type Metagenome
publication
properties 
{...}
dbXrefs
sra-run  DRR019549DRR019550DRR019551DRR019552DRR019553DRR019554DRR019555DRR019556DRR019557DRR019558 More
sra-submission  DRA002296DRA002297DRA002298DRA002299DRA002300DRA002301DRA002302DRA002303DRA002304
biosample  SAMD00017862SAMD00017863SAMD00017864SAMD00017865SAMD00017866SAMD00017867SAMD00017868SAMD00017869SAMD00017870SAMD00017871 More
sra-study  DRP003173
sra-sample  DRS031709DRS031710DRS031711DRS031712DRS031713DRS031714DRS031715DRS031716DRS031717DRS031718 More
sra-experiment  DRX017702DRX017703DRX017704DRX017705DRX017706DRX017707DRX017708DRX017709DRX017710DRX017711 More
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status public
visibility unrestricted-access
dateCreated 2014-06-13T01:16:04+09:00
dateModified 2016-06-30T13:24:13+09:00
datePublished 2016-06-30T13:24:12+09:00