home > bioproject > PRJDB3134
identifier PRJDB3134
type bioproject
sameAs
organism Helicobacter pylori
title Whole genome sequencing of Helicobacter pylori with same MLST sequence type
description Helicobacter pylori, a bacterial stomach pathogen causing gastritis, ulcers and cancer, is known for high genome/epigenome diversity through mutation and recombination. It often infects a human host in the childhood and persists there for the life. One of the hypotheses for its rapid evolution is that it drastically changes their genomes during adaptation to a new host. In the present work, we aimed to understand H. pylori genome microevolution in human familial transmission. We carried out whole genome sequencing of very closely related strains (the same or almost same sequence type in multi-locus sequence typing by seven genes) found in family members in Japan to determine the path of infection and important nucleotide substitutions for infection establishment.
data type Genome Sequencing
publication
25978460
properties 
{...}
dbXrefs
sra-run  DRR023000DRR023001DRR023002DRR023003DRR023004DRR023005DRR023006DRR023007DRR023008DRR023009 More
sra-submission  DRA002504
biosample  SAMD00019955SAMD00019956SAMD00019957SAMD00019958SAMD00019959SAMD00019960SAMD00019961SAMD00019962SAMD00019963SAMD00019964 More
sra-study  DRP002685
sra-sample  DRS019883DRS019884DRS019885DRS019886DRS019887DRS019888DRS019889DRS019890DRS019891DRS019892 More
sra-experiment  DRX021055DRX021056DRX021057DRX021058DRX021059DRX021060DRX021061DRX021062DRX021063DRX021064 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2014-09-09T08:46:25+09:00
dateModified 2015-06-25T00:56:59+09:00
datePublished 2015-06-25T00:55:43+09:00