home > bioproject > PRJDB3216
identifier PRJDB3216
type bioproject
sameAs
organism Mus musculus
title Genome-wide comparative analysis of DNA-type transposon vector insertion sites in mouse embryonic stem cells.
description DNA-type transposons, such as Tol2, Sleeping Beauty, and piggyBac, have been widely used as tools for genetic engineering and gene transfer. Previous studies have reported that these vectors show different trends of insertion preferences in the genome, but truly comprehensive genome-wide analyses have been limited, at least in part, because of relatively small dataset sizes or biased selection strategies. Using high-throughput DNA sequencing technologies, here we conducted large-scale analyses of insertion preferences of the above-mentioned three vectors, together with a retroviral vector as a control, in mouse embryonic stem cells with unprecedented precisions.
data type Other
publication
28252665
properties 
{...}
dbXrefs
sra-run  DRR023875DRR023876DRR023877DRR023878DRR023879DRR023880DRR023881DRR023882DRR023883DRR023884 More
sra-submission  DRA002594
sra-analysis  DRZ007730DRZ007732DRZ007734DRZ007736DRZ007741DRZ007742DRZ007743DRZ007744
biosample  SAMD00020877SAMD00020878SAMD00020879SAMD00020880SAMD00020881SAMD00020882SAMD00020883SAMD00020884SAMD00020885
sra-study  DRP003520
sra-sample  DRS041221DRS041222DRS041223DRS041224DRS041225DRS041226DRS041227DRS041228DRS041229
sra-experiment  DRX021631DRX021632DRX021633DRX021634DRX021635DRX021636DRX021637DRX021638DRX021639
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2014-10-08T06:52:09+09:00
dateModified 2017-03-30T03:21:58+09:00
datePublished 2017-03-01T13:55:08+09:00