| identifier |
PRJDB3378 |
| type |
bioproject |
| sameAs |
|
| organism |
metagenomes
|
| title |
A possible strategy to the viral population analysis of tick based on Batch Learning Self-Organizing Maps (BLSOMs) |
| description |
Ticks transmit a wide range of viral, bacterial, and protozoal pathogens, which are often zoonotic. The novel tick-borne viral pathogens have been reported during the past few years. The aim of this study was to investigate a diversity of tick viral populations, which may contain as-yet unidentified viruses, using a combination of high throughput pyrosequencing, BLAST search, and Batch Learning Self-Organizing Map (BLSOM) program, which provided pyrogenetic estimation based on the similarity of oligonucleotide frequencies. DNA/cDNA prepared from virus enriched fractions obtained from Ixodes persulcatus ticks was pyrosequencing. After de novo assembly contigs were classified using BLAST and BLSOM program. |
| data type |
Metagenome
|
| publication |
|
| properties ▽ |
{...}
|
| dbXrefs |
|
| distribution |
JSONJSON-LD
|
| Download |
|
| status |
public |
| visibility |
unrestricted-access |
| dateCreated |
2014-12-16T01:34:49+09:00 |
| dateModified |
2019-06-01T13:04:48+09:00 |
| datePublished |
2019-06-01T13:04:48+09:00 |