home > bioproject > PRJDB3382
identifier PRJDB3382
type bioproject
sameAs
organism soil metagenome
title Analysis of Early Microbial Communities on Recent Volcanic Deposits of Mt. Merapi, Indonesia
description Due to the 2010 Mt. Merapi eruption, the land around the mountain was covered by pyroclastic materials. For the environmental rehabilitation of the volcanic eruption-affected area, it is important to know the pioneer soil microbial communities. The aim of this study was to characterize the early microbial communities in the Mt. Merapi unvegetated volcanic deposits. This investigation was designed to compare the microbial communities of the volcanic deposits with those of forest soil near the mountain by using molecular genetic approaches targeting bacterial 16S rRNA genes. Two unvegetated sites (BR and BRU) were established together with a forest site (FR) as a reference. The diversity index were 3.11, 2.25, and 2.91 on sites BR, BRU, and FR, respectively, which indicated that the bacterial diversity was relatively higher in site BR than in the other sites. Results of the PCoA analysis showed that all bacterial communities of the volcanic deposit samples clustered away from those of forest soil samples. Microbial communities in recent volcanic deposits of Mt. Merapi were phylogenetically diverse inspite of very low-carbon conditions. Proteobacteria was the most abundant phylum in the bacterial community of volcanic deposits. Inspection underlying families revealed the predominance of the family Caulobacteraceae in Alphaproteobacteria, Oxalobacteraceae in Betaproteobacteria, and Xanthomonadaceae in Gammaproteobacteria in the volcanic deposit communities.
data type targeted loci
publication
properties 
{...}
dbXrefs
sra-run  DRR028115DRR028116DRR028117DRR028118DRR028119DRR028120DRR028121DRR028122DRR028123DRR028124 More
sra-submission  DRA002857
biosample  SAMD00024251SAMD00024252SAMD00024253SAMD00024254SAMD00024255SAMD00024256SAMD00024257SAMD00024258SAMD00024259
sra-study  DRP002613
sra-sample  DRS019418DRS019419DRS019420DRS019421DRS019422DRS019423DRS019424DRS019425DRS019426
sra-experiment  DRX025678DRX025679DRX025680DRX025681DRX025682DRX025683DRX025684DRX025685DRX025686DRX025687 More
distribution JSONJSON-LD
Download
ddbj_core_bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-12-16T08:21:35+09:00
dateModified 2015-04-01T23:38:48+09:00
datePublished 2015-04-01T23:38:48+09:00