home > bioproject > PRJDB4027
identifier PRJDB4027
type bioproject
sameAs
organism Homo sapiens
title Performance comparison of four commercial human whole-exome capture platforms
description We compared performance of four commercial human whole-exome capture platforms using two HapMap-JPT sampels (NA18943 and NA18948). The DNA samples were obtained from Coriell, where lymphoblastoid cell lines were established by Epstein-Barr virus (Human herpesvirus 4)-mediated transformation of peripheral blood mononuclear cells. Each exome captured sequencing library was produced from one of four different technologies: Roche/NimbleGen SeqCap EZ Human Exome Library v3.0, Illumina Nextera Rapid Capture Exome (v1.2), Agilent SureSelect XT Human All Exon v5 and Agilent SureSelect QXT. The captured DNA was sequenced using the Illumina HiSeq2500 platform with paired-end reads of 161bp for insert libraries according to the manufacturer instructions.The Data Access Committee of the National Bioscience Database Center (NBDC) approved that this personal genetic data were made published according to NBDC data sharing guidelines (http://humandbs.biosciencedbc.jp/).
data type Exome
publication
properties 
{...}
dbXrefs
sra-run  DRR039925DRR039926DRR039927DRR039928DRR039929DRR039930DRR039931DRR039932
sra-submission  DRA003736
biosample  SAMD00034895SAMD00034896SAMD00034897SAMD00034898SAMD00034899SAMD00034900SAMD00034901SAMD00034902
sra-study  DRP003203
sra-sample  DRS032678DRS032679DRS032680DRS032681DRS032682DRS032683DRS032684DRS032685
sra-experiment  DRX036153DRX036154DRX036155DRX036156DRX036157DRX036158DRX036159DRX036160
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2015-06-26T10:00:06+09:00
dateModified 2015-07-02T00:23:50+09:00
datePublished 2015-07-02T00:23:50+09:00